Name: tz1
Variants: 605288
Novel Variants: 35523 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 605288 189318 0/1 415256 1/1 714 1/2
Total Gene-associated SNVs 605288 189318 0/1 415256 1/1 714 1/2

Type Total Variants
49
CODON_CHANGE_PLUS_CODON_DELETION147
CODON_CHANGE_PLUS_CODON_INSERTION97
CODON_DELETION61
CODON_INSERTION91
FRAME_SHIFT360
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED8
FRAME_SHIFT+STOP_LOST2
GENE_FUSION_REVERESE1
MOTIF_DELETED18
MOTIF[MA0003.1:Ap2alpha]69
MOTIF[MA0005.1:MEF2C]1
MOTIF[MA0014.1:Pax5]22
MOTIF[MA0016.1:RXRA]9
MOTIF[MA0024.1:E2F1]13
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]6
MOTIF[MA0047.1:FOXA2]4
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]45
MOTIF[MA0059.1:Cmyc]11
MOTIF[MA0062.1:Gabp]16
MOTIF[MA0062.2:Gabp]56
MOTIF[MA0065.1:PPARG]7
MOTIF[MA0065.2:PPARG]8
MOTIF[MA0079.1:SP1]34
MOTIF[MA0079.2:SP1]68
MOTIF[MA0080.1:PU1]7
MOTIF[MA0080.2:PU1]6
MOTIF[MA0083.1:Srf]3
MOTIF[MA0093.1:USF1]32
MOTIF[MA0095.1:Yy1]24
MOTIF[MA0099.1:Cfos]7
MOTIF[MA0099.2:AP1]10
MOTIF[MA0114.1:HNF4A]24
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]3
MOTIF[MA0138.2:Nrsf]26
MOTIF[MA0139.1:CTCF]316
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]45
MOTIF[MA0148.1:FOXA1]4
MOTIF[MA0154.1:EBF]27
MOTIF[MA0159.1:RXR]4
MOTIF[MA0162.1:Egr1]104
NON_SYNONYMOUS_CODING12520
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION271
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS258
SPLICE_SITE_REGION49
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION3
SPLICE_SITE_REGION+SYNONYMOUS_CODING264
START_GAINED454
START_LOST12
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED148
STOP_GAINED+CODON_INSERTION2
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING12247
SYNONYMOUS_STOP10
TRANSCRIPT4
None0

Type Total Variants
2678
MISSENSE12833
NONSENSE150
SILENT12521
None0

Type Total Variants
HIGH873
LOW13496
MODERATE13192
MODIFIER621
None0

Type Total Variants
.605288

Quality Value
Min30.0
Average448.675080376751
Max250919.77

Read Depth Value
Min0
Average25.869486921928075
Max6149

Type Total Variants
None0

Chromossome Total Variants
153216
1030446
1129493
1227891
1316197
1418941
1519160
1626540
1726145
1813709
1925083
244487
2016830
2113798
2214145
334472
433308
526609
633992
734401
824530
927782
M49
X7293
Y6771