Name: pdb346 vep
Variants: 58561
Novel Variants: 483 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 94 |
CODON_CHANGE_PLUS_CODON_INSERTION | 65 |
CODON_DELETION | 41 |
CODON_INSERTION | 56 |
FRAME_SHIFT | 213 |
FRAME_SHIFT+SPLICE_SITE_REGION | 38 |
FRAME_SHIFT+START_LOST | 3 |
FRAME_SHIFT+STOP_GAINED | 6 |
FRAME_SHIFT+STOP_LOST | 3 |
MOTIF_DELETED | 1 |
MOTIF[MA0003.1:Ap2alpha] | 9 |
MOTIF[MA0014.1:Pax5] | 3 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0024.1:E2F1] | 3 |
MOTIF[MA0058.1:Max] | 5 |
MOTIF[MA0059.1:Cmyc] | 1 |
MOTIF[MA0062.1:Gabp] | 1 |
MOTIF[MA0062.2:Gabp] | 11 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.2:SP1] | 6 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0093.1:USF1] | 1 |
MOTIF[MA0095.1:Yy1] | 6 |
MOTIF[MA0099.1:Cfos] | 1 |
MOTIF[MA0114.1:HNF4A] | 1 |
MOTIF[MA0138.2:Nrsf] | 1 |
MOTIF[MA0139.1:CTCF] | 39 |
MOTIF[MA0147.1:Cmyc] | 2 |
MOTIF[MA0162.1:Egr1] | 5 |
NON_SYNONYMOUS_CODING | 10291 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 207 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 219 |
SPLICE_SITE_REGION | 24 |
SPLICE_SITE_REGION+CODON_DELETION | 2 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 206 |
START_GAINED | 115 |
START_LOST | 15 |
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED | 96 |
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED+CODON_INSERTION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 2 |
STOP_LOST | 19 |
STOP_LOST+SPLICE_SITE_REGION | 1 |
SYNONYMOUS_CODING | 10719 |
SYNONYMOUS_STOP | 12 |
TRANSCRIPT | 1 |
None | 0 |
Type | Total Variants |
---|---|
None | 0 |
Type | Total Variants |
---|---|
. | 58561 |
Quality | Value |
---|---|
Min | 10.15 |
Average | 919.330445518074 |
Max | 35712.77 |
Read Depth | Value |
---|---|
Min | 1 |
Average | 49.90797629821895 |
Max | 1376 |
Type | Total Variants |
---|---|
None | 0 |