Name: pdb336 vep
Variants: 60111
Novel Variants: 545 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 60111 37630 0/1 22371 1/1 110 1/2
Total Gene-associated SNVs 60111 37630 0/1 22371 1/1 110 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION103
CODON_CHANGE_PLUS_CODON_INSERTION65
CODON_DELETION44
CODON_INSERTION58
FRAME_SHIFT234
FRAME_SHIFT+SPLICE_SITE_REGION38
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST6
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]5
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]5
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]9
MOTIF[MA0079.2:SP1]6
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]44
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]6
NON_SYNONYMOUS_CODING10495
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION211
PROTEIN_PROTEIN_INTERACTION_LOCUS6
PROTEIN_STRUCTURAL_INTERACTION_LOCUS223
SPLICE_SITE_REGION21
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING213
START_GAINED128
START_LOST15
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED101
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST18
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING10850
SYNONYMOUS_STOP9
TRANSCRIPT2
None0

Type Total Variants
1043
MISSENSE10740
NONSENSE102
SILENT11072
None0

Type Total Variants
HIGH651
LOW11263
MODERATE10979
MODIFIER64
None0

Type Total Variants
.60111

Quality Value
Min10.17
Average2722.05393971219
Max85362.77

Read Depth Value
Min0
Average144.4936700437524
Max3291

Type Total Variants
None0

Chromossome Total Variants
16092
102548
114309
123248
131014
142298
152237
162827
173468
18939
194192
24217
201471
21792
221648
33017
42199
52456
62487
73357
82119
92397
X727
Y52