Name: 62388010_s7 mvar 62388010_S7.SAMTOOLS
Variants: 84858
Novel Variants: 7326 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 54 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 67 |
| CODON_DELETION | 109 |
| CODON_INSERTION | 112 |
| FRAME_SHIFT | 163 |
| FRAME_SHIFT+NON_SYNONYMOUS_CODING | 1 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 44 |
| FRAME_SHIFT+START_LOST | 1 |
| FRAME_SHIFT+STOP_GAINED | 2 |
| FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 1 |
| FRAME_SHIFT+STOP_LOST | 2 |
| MOTIF[MA0003.1:Ap2alpha] | 20 |
| MOTIF[MA0014.1:Pax5] | 2 |
| MOTIF[MA0016.1:RXRA] | 3 |
| MOTIF[MA0024.1:E2F1] | 1 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0047.1:FOXA2] | 1 |
| MOTIF[MA0047.2:FOXA2] | 1 |
| MOTIF[MA0058.1:Max] | 10 |
| MOTIF[MA0059.1:Cmyc] | 2 |
| MOTIF[MA0062.1:Gabp] | 3 |
| MOTIF[MA0062.2:Gabp] | 10 |
| MOTIF[MA0065.1:PPARG] | 1 |
| MOTIF[MA0065.2:PPARG] | 2 |
| MOTIF[MA0074.1:RXRA] | 1 |
| MOTIF[MA0079.1:SP1] | 2 |
| MOTIF[MA0079.2:SP1] | 10 |
| MOTIF[MA0080.2:PU1] | 3 |
| MOTIF[MA0093.1:USF1] | 3 |
| MOTIF[MA0095.1:Yy1] | 7 |
| MOTIF[MA0099.2:AP1] | 1 |
| MOTIF[MA0114.1:HNF4A] | 5 |
| MOTIF[MA0138.2:Nrsf] | 1 |
| MOTIF[MA0139.1:CTCF] | 56 |
| MOTIF[MA0147.1:Cmyc] | 3 |
| MOTIF[MA0154.1:EBF] | 2 |
| MOTIF[MA0162.1:Egr1] | 15 |
| NON_SYNONYMOUS_CODING | 11319 |
| NON_SYNONYMOUS_CODING+CODON_DELETION | 1 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 217 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 261 |
| SPLICE_SITE_REGION | 26 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_DELETION | 3 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 252 |
| START_GAINED | 206 |
| START_LOST | 15 |
| START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| START_LOST+CODON_DELETION | 1 |
| STOP_GAINED | 89 |
| STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| STOP_GAINED+CODON_INSERTION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 25 |
| STOP_LOST+CODON_DELETION | 1 |
| STOP_LOST+SPLICE_SITE_REGION | 2 |
| SYNONYMOUS_CODING | 11877 |
| SYNONYMOUS_CODING+CODON_DELETION | 2 |
| SYNONYMOUS_STOP | 10 |
| TRANSCRIPT | 1 |
| None | 0 |
| Type | Total Variants |
|---|---|
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 84858 |
| Quality | Value |
|---|---|
| Min | 10.19 |
| Average | 1394.04920325734 |
| Max | 36402.1 |
| Read Depth | Value |
|---|---|
| Min | 1 |
| Average | 65.3339343373636 |
| Max | 1733 |
| Type | Total Variants |
|---|---|
| None | 0 |