Name: 62388010_s7 mvar 62388010_S7.GATK
Variants: 84546
Novel Variants: 8653 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 84546 53115 0/1 31244 1/1 113 1/2 74 2/1
Total Gene-associated SNVs 84546 53115 0/1 31244 1/1 113 1/2 74 2/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION72
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION61
CODON_DELETION104
CODON_DELETION+SPLICE_SITE_REGION3
CODON_DELETION+SYNONYMOUS_CODING1
CODON_INSERTION92
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT265
FRAME_SHIFT+NON_SYNONYMOUS_CODING2
FRAME_SHIFT+SPLICE_SITE_REGION45
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED6
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST5
GENE_FUSION_REVERESE1
MOTIF[MA0003.1:Ap2alpha]15
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]9
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0074.1:RXRA]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]14
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]52
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]13
NON_SYNONYMOUS_CODING10885
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION208
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS255
SPLICE_SITE_REGION24
SPLICE_SITE_REGION+SYNONYMOUS_CODING244
START_GAINED204
START_LOST15
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED90
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST24
STOP_LOST+CODON_DELETION2
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11578
SYNONYMOUS_STOP9
TRANSCRIPT1
None0

Type Total Variants
1310
MISSENSE11134
NONSENSE92
SILENT11831
None0

Type Total Variants
HIGH723
LOW12135
MODERATE11428
MODIFIER81
None0

Type Total Variants
PASS84546

Quality Value
Min30.71
Average1385.88615132523
Max10797.8

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
17871
103756
115204
124625
131501
143055
152823
164084
174926
181355
195811
25652
202152
211226
222053
34843
43157
53528
65372
74204
82928
93374
X1005
Y41