Name: 62388010_s7 mvar 62388010_S7.FREEBAYES
Variants: 87073
Novel Variants: 11065 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 42 |
CODON_CHANGE_PLUS_CODON_INSERTION | 44 |
CODON_DELETION | 92 |
CODON_INSERTION | 72 |
FRAME_SHIFT | 171 |
FRAME_SHIFT+NON_SYNONYMOUS_CODING | 6 |
FRAME_SHIFT+SPLICE_SITE_REGION | 42 |
FRAME_SHIFT+START_LOST | 1 |
FRAME_SHIFT+STOP_GAINED | 2 |
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 1 |
FRAME_SHIFT+STOP_LOST | 3 |
FRAME_SHIFT+SYNONYMOUS_CODING | 1 |
MOTIF[MA0003.1:Ap2alpha] | 17 |
MOTIF[MA0014.1:Pax5] | 2 |
MOTIF[MA0016.1:RXRA] | 2 |
MOTIF[MA0024.1:E2F1] | 1 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0047.2:FOXA2] | 1 |
MOTIF[MA0058.1:Max] | 10 |
MOTIF[MA0059.1:Cmyc] | 2 |
MOTIF[MA0062.1:Gabp] | 3 |
MOTIF[MA0062.2:Gabp] | 11 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0065.2:PPARG] | 2 |
MOTIF[MA0074.1:RXRA] | 1 |
MOTIF[MA0079.1:SP1] | 2 |
MOTIF[MA0079.2:SP1] | 14 |
MOTIF[MA0080.2:PU1] | 3 |
MOTIF[MA0093.1:USF1] | 3 |
MOTIF[MA0095.1:Yy1] | 7 |
MOTIF[MA0099.2:AP1] | 1 |
MOTIF[MA0114.1:HNF4A] | 5 |
MOTIF[MA0138.2:Nrsf] | 1 |
MOTIF[MA0139.1:CTCF] | 59 |
MOTIF[MA0147.1:Cmyc] | 3 |
MOTIF[MA0154.1:EBF] | 2 |
MOTIF[MA0162.1:Egr1] | 13 |
NON_SYNONYMOUS_CODING | 11456 |
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
NON_SYNONYMOUS_CODING+CODON_DELETION | 1 |
NON_SYNONYMOUS_CODING+CODON_INSERTION | 1 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 226 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 259 |
SPLICE_SITE_REGION | 26 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_DELETION | 2 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 255 |
START_GAINED | 196 |
START_LOST | 15 |
STOP_GAINED | 84 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 26 |
STOP_LOST+CODON_DELETION | 2 |
STOP_LOST+SPLICE_SITE_REGION | 2 |
SYNONYMOUS_CODING | 11785 |
SYNONYMOUS_CODING+CODON_DELETION | 2 |
SYNONYMOUS_STOP | 10 |
TRANSCRIPT | 1 |
None | 0 |
Type | Total Variants |
---|---|
None | 0 |
Type | Total Variants |
---|---|
PASS | 87073 |
Quality | Value |
---|---|
Min | 10.05 |
Average | 1338.48896960035 |
Max | 36402.1 |
Read Depth | Value |
---|---|
Min | 2 |
Average | 65.55571761625303 |
Max | 1875 |
Type | Total Variants |
---|---|
None | 0 |