Name: 62388010_s7 mvar 62388010_S7.FREEBAYES
Variants: 87073
Novel Variants: 11065 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION42
CODON_CHANGE_PLUS_CODON_INSERTION44
CODON_DELETION92
CODON_INSERTION72
FRAME_SHIFT171
FRAME_SHIFT+NON_SYNONYMOUS_CODING6
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST3
FRAME_SHIFT+SYNONYMOUS_CODING1
MOTIF[MA0003.1:Ap2alpha]17
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]11
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0074.1:RXRA]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]14
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]59
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]13
NON_SYNONYMOUS_CODING11456
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
NON_SYNONYMOUS_CODING+CODON_DELETION1
NON_SYNONYMOUS_CODING+CODON_INSERTION1
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION226
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS259
SPLICE_SITE_REGION26
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING255
START_GAINED196
START_LOST15
STOP_GAINED84
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST26
STOP_LOST+CODON_DELETION2
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11785
SYNONYMOUS_CODING+CODON_DELETION2
SYNONYMOUS_STOP10
TRANSCRIPT1
None0

Type Total Variants
1613
MISSENSE11298
NONSENSE78
SILENT12013
None0

Type Total Variants
HIGH621
LOW12350
MODERATE11940
MODIFIER91
None0

Type Total Variants
PASS87073

Quality Value
Min10.05
Average1338.48896959959
Max36402.1

Read Depth Value
Min2
Average65.55571761625303
Max1875

Type Total Variants
None0

Chromossome Total Variants
18453
103862
115118
124734
131511
143088
153113
164214
175133
181400
195921
25890
202139
211257
222346
34900
43238
53645
65124
74253
82976
93613
X1078
Y67