Name: qw2315_combined_r1 fastq raw
Variants: 63903
Novel Variants: 1947 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 63903 39294 0/1 24182 1/1 427 1/2
Total Gene-associated SNVs 63903 39294 0/1 24182 1/1 427 1/2

Type Total Variants
41
CODON_CHANGE_PLUS_CODON_DELETION66
CODON_CHANGE_PLUS_CODON_INSERTION38
CODON_DELETION20
CODON_INSERTION35
FRAME_SHIFT107
FRAME_SHIFT+SPLICE_SITE_REGION11
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED7
GENE_FUSION_REVERESE1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]8
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0058.1:Max]9
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]9
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]10
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]34
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]6
NON_SYNONYMOUS_CODING5063
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION108
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS104
SPLICE_SITE_REGION21
SPLICE_SITE_REGION+SYNONYMOUS_CODING128
START_GAINED125
START_LOST5
STOP_GAINED51
STOP_GAINED+CODON_INSERTION2
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST11
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING5186
SYNONYMOUS_STOP6
None0

Type Total Variants
695
MISSENSE5189
NONSENSE53
SILENT5320
None0

Type Total Variants
HIGH307
LOW5522
MODERATE5330
MODIFIER98
None0

Type Total Variants
.63903

Quality Value
Min10.17
Average1108.77016963296
Max91418.77

Read Depth Value
Min0
Average71.54016243368856
Max4231

Type Total Variants
None0

Chromossome Total Variants
114285
210583
37402
45188
55921
65603
77389
84326
93165
M41