Name: qw2315_combined_r1 fastq raw
Variants: 63903
Novel Variants: 1947 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
41 | |
CODON_CHANGE_PLUS_CODON_DELETION | 66 |
CODON_CHANGE_PLUS_CODON_INSERTION | 38 |
CODON_DELETION | 20 |
CODON_INSERTION | 35 |
FRAME_SHIFT | 107 |
FRAME_SHIFT+SPLICE_SITE_REGION | 11 |
FRAME_SHIFT+START_LOST | 2 |
FRAME_SHIFT+STOP_GAINED | 7 |
GENE_FUSION_REVERESE | 1 |
MOTIF_DELETED | 1 |
MOTIF[MA0003.1:Ap2alpha] | 8 |
MOTIF[MA0014.1:Pax5] | 3 |
MOTIF[MA0024.1:E2F1] | 5 |
MOTIF[MA0058.1:Max] | 9 |
MOTIF[MA0059.1:Cmyc] | 2 |
MOTIF[MA0062.1:Gabp] | 3 |
MOTIF[MA0062.2:Gabp] | 9 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 3 |
MOTIF[MA0079.2:SP1] | 10 |
MOTIF[MA0080.2:PU1] | 2 |
MOTIF[MA0093.1:USF1] | 3 |
MOTIF[MA0095.1:Yy1] | 2 |
MOTIF[MA0099.2:AP1] | 2 |
MOTIF[MA0114.1:HNF4A] | 2 |
MOTIF[MA0138.2:Nrsf] | 1 |
MOTIF[MA0139.1:CTCF] | 34 |
MOTIF[MA0147.1:Cmyc] | 3 |
MOTIF[MA0154.1:EBF] | 4 |
MOTIF[MA0162.1:Egr1] | 6 |
NON_SYNONYMOUS_CODING | 5063 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 108 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 2 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 104 |
SPLICE_SITE_REGION | 21 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 128 |
START_GAINED | 125 |
START_LOST | 5 |
STOP_GAINED | 51 |
STOP_GAINED+CODON_INSERTION | 2 |
STOP_GAINED+SPLICE_SITE_REGION | 2 |
STOP_LOST | 11 |
STOP_LOST+SPLICE_SITE_REGION | 2 |
SYNONYMOUS_CODING | 5186 |
SYNONYMOUS_STOP | 6 |
None | 0 |
Type | Total Variants |
---|---|
None | 0 |
Type | Total Variants |
---|---|
. | 63903 |
Quality | Value |
---|---|
Min | 10.17 |
Average | 1108.77016963186 |
Max | 91418.77 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 71.54016243368856 |
Max | 4231 |
Type | Total Variants |
---|---|
None | 0 |