Name: 75_filt_10x
Variants: 90810
Novel Variants: 1538 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 64 |
CODON_CHANGE_PLUS_CODON_INSERTION | 43 |
CODON_DELETION | 35 |
CODON_INSERTION | 45 |
FRAME_SHIFT | 136 |
FRAME_SHIFT+SPLICE_SITE_REGION | 25 |
FRAME_SHIFT+START_LOST | 3 |
FRAME_SHIFT+STOP_GAINED | 3 |
FRAME_SHIFT+STOP_LOST | 4 |
MOTIF[MA0003.1:Ap2alpha] | 2 |
MOTIF[MA0014.1:Pax5] | 2 |
MOTIF[MA0016.1:RXRA] | 2 |
MOTIF[MA0024.1:E2F1] | 2 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0036.1:Gata2] | 1 |
MOTIF[MA0047.2:FOXA2] | 1 |
MOTIF[MA0058.1:Max] | 7 |
MOTIF[MA0059.1:Cmyc] | 3 |
MOTIF[MA0062.1:Gabp] | 4 |
MOTIF[MA0062.2:Gabp] | 12 |
MOTIF[MA0079.1:SP1] | 3 |
MOTIF[MA0079.2:SP1] | 8 |
MOTIF[MA0080.1:PU1] | 2 |
MOTIF[MA0080.2:PU1] | 1 |
MOTIF[MA0093.1:USF1] | 1 |
MOTIF[MA0095.1:Yy1] | 7 |
MOTIF[MA0099.2:AP1] | 2 |
MOTIF[MA0114.1:HNF4A] | 3 |
MOTIF[MA0138.2:Nrsf] | 3 |
MOTIF[MA0139.1:CTCF] | 46 |
MOTIF[MA0140.1:Tal1] | 1 |
MOTIF[MA0147.1:Cmyc] | 2 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0154.1:EBF] | 1 |
MOTIF[MA0159.1:RXR] | 2 |
MOTIF[MA0162.1:Egr1] | 11 |
NON_SYNONYMOUS_CODING | 10153 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 175 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 3 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 222 |
SPLICE_SITE_REGION | 49 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
SPLICE_SITE_REGION+CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 184 |
START_GAINED | 254 |
START_LOST | 9 |
STOP_GAINED | 112 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 20 |
STOP_LOST+SPLICE_SITE_REGION | 3 |
SYNONYMOUS_CODING | 10290 |
SYNONYMOUS_STOP | 11 |
None | 0 |
Type | Total Variants |
---|---|
None | 0 |
Type | Total Variants |
---|---|
PASS | 90810 |
Quality | Value |
---|---|
Min | 30.77 |
Average | 444.133120471077 |
Max | 27161.73 |
Read Depth | Value |
---|---|
Min | 5 |
Average | 31.546250412950116 |
Max | 250 |
Type | Total Variants |
---|---|
None | 0 |