Name: 75_filt_10x
Variants: 90810
Novel Variants: 1538 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 90810 56740 0/1 33976 1/1 94 1/2
Total Gene-associated SNVs 90810 56740 0/1 33976 1/1 94 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION64
CODON_CHANGE_PLUS_CODON_INSERTION43
CODON_DELETION35
CODON_INSERTION45
FRAME_SHIFT136
FRAME_SHIFT+SPLICE_SITE_REGION25
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST4
MOTIF[MA0003.1:Ap2alpha]2
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]7
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]12
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]8
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]46
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]2
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]1
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]11
NON_SYNONYMOUS_CODING10153
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION175
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS222
SPLICE_SITE_REGION49
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING184
START_GAINED254
START_LOST9
STOP_GAINED112
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST20
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10290
SYNONYMOUS_STOP11
None0

Type Total Variants
1020
MISSENSE10361
NONSENSE113
SILENT10485
None0

Type Total Variants
HIGH541
LOW10852
MODERATE10518
MODIFIER68
None0

Type Total Variants
PASS90810

Quality Value
Min30.77
Average444.133120471533
Max27161.73

Read Depth Value
Min5
Average31.546250412950116
Max250

Type Total Variants
None0

Chromossome Total Variants
18001
104372
115726
124757
131711
143314
152837
163739
174069
181835
194884
27369
202304
211530
222113
35187
43861
53695
65325
74646
83031
93805
MT2
X1765
Y932