Name: fakhrieh_salemi gatk indel
Variants: 25525
Novel Variants: 2187 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 25525 8521 0/1 16796 1/1 208 1/2
Total Gene-associated SNVs 25525 8521 0/1 16796 1/1 208 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION148
CODON_CHANGE_PLUS_CODON_INSERTION101
CODON_DELETION53
CODON_INSERTION85
FRAME_SHIFT263
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST5
GENE_FUSION1
GENE_FUSION_REVERESE3
MOTIF_DELETED7
MOTIF[MA0003.1:Ap2alpha]11
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0058.1:Max]3
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]8
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]6
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]9
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]13
PROTEIN_STRUCTURAL_INTERACTION_LOCUS1
SPLICE_SITE_REGION3
SPLICE_SITE_REGION+CODON_DELETION3
SPLICE_SITE_REGION+CODON_INSERTION1
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_LOST+CODON_DELETION1
TRANSCRIPT3
None0

Type Total Variants
800
None0

Type Total Variants
HIGH325
LOW81
MODERATE391
MODIFIER3
None0

Type Total Variants
PASS25525

Quality Value
Min30.03
Average277.150618609299
Max11507.73

Read Depth Value
Min0
Average11.773202742409403
Max433

Type Total Variants
None0

Chromossome Total Variants
12337
101071
111301
121382
13629
14917
15905
161031
171356
18551
191567
21736
20629
21443
22597
31332
41092
51151
61417
71468
8901
91006
X706