Name: index31
Variants: 163133
Novel Variants: 1634 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 163133 85554 0/1 77308 1/1 271 1/2
Total Gene-associated SNVs 163133 85554 0/1 77308 1/1 271 1/2

Type Total Variants
21
CODON_CHANGE_PLUS_CODON_DELETION102
CODON_CHANGE_PLUS_CODON_INSERTION65
CODON_DELETION40
CODON_INSERTION49
FRAME_SHIFT138
FRAME_SHIFT+SPLICE_SITE_REGION37
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST4
GENE_FUSION1
MOTIF[MA0003.1:Ap2alpha]17
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]16
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]29
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]6
MOTIF[MA0079.2:SP1]21
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]2
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.1:Cfos]3
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]13
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]115
MOTIF[MA0147.1:Cmyc]8
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]5
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]24
NON_SYNONYMOUS_CODING10831
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION229
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS259
SPLICE_SITE_REGION33
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING250
START_GAINED307
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED110
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11307
SYNONYMOUS_STOP9
None0

Type Total Variants
1382
MISSENSE11102
NONSENSE112
SILENT11566
None0

Type Total Variants
HIGH605
LOW12018
MODERATE11318
MODIFIER221
None0

Type Total Variants
.163133

Quality Value
Min30.73
Average567.66393936232
Max32729.73

Read Depth Value
Min2
Average31.017255858716506
Max250

Type Total Variants
None0
-61
2|41
3,35
2,213
3|216
-59
-5|-51
2|34
5,52
2|261
2195
3105
2|2|23
65
-5,-51
527
2|2,2|22
5|2|21
2|2|2|27
2|2|2,2|2|21
6|21
5|52
2|53

Chromossome Total Variants
116068
107481
119880
128614
133767
146238
155478
167068
178504
182956
1910332
211899
204316
212335
223933
38854
47142
57198
67052
79115
85745
96856
M21
X1979
Y302