Name: fakhrieh_salemi gatk snp
Variants: 174991
Novel Variants: 2637 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 174991 70160 0/1 104787 1/1 44 1/2
Total Gene-associated SNVs 174991 70160 0/1 104787 1/1 44 1/2

Type Total Variants
MOTIF[MA0003.1:Ap2alpha]17
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]16
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]24
MOTIF[MA0079.1:SP1]11
MOTIF[MA0079.2:SP1]16
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]12
MOTIF[MA0095.1:Yy1]14
MOTIF[MA0099.1:Cfos]4
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]13
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]9
MOTIF[MA0139.1:CTCF]134
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]9
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]4
MOTIF[MA0162.1:Egr1]32
NON_SYNONYMOUS_CODING10349
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION215
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS257
SPLICE_SITE_REGION29
SPLICE_SITE_REGION+SYNONYMOUS_CODING228
START_GAINED336
START_LOST11
STOP_GAINED98
STOP_LOST21
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING11143
SYNONYMOUS_STOP8
None0

Type Total Variants
991
MISSENSE10597
NONSENSE98
SILENT11379
None0

Type Total Variants
HIGH392
LOW11853
MODERATE10564
MODIFIER256
None0

Type Total Variants
PASS174991

Quality Value
Min30.04
Average432.166982873991
Max15093.77

Read Depth Value
Min0
Average18.789200587458783
Max549

Type Total Variants
None0

Chromossome Total Variants
117213
107652
119567
128858
134041
146364
156357
167757
179252
183329
1910590
211555
204178
212656
224653
39084
47275
57748
610370
79181
86490
97114
MT7
X3700