Name: fakhrieh_salemi gatk snp
Variants: 174991
Novel Variants: 2637 (Not in latest DbSNP Build)
| Type | Total Variants | |||
|---|---|---|---|---|
| Total SNVs | 174991 | 70160 0/1 | 104787 1/1 | 44 1/2 |
| Total Gene-associated SNVs | 174991 | 70160 0/1 | 104787 1/1 | 44 1/2 |
| Type | Total Variants |
|---|---|
| MOTIF[MA0003.1:Ap2alpha] | 17 |
| MOTIF[MA0014.1:Pax5] | 7 |
| MOTIF[MA0016.1:RXRA] | 2 |
| MOTIF[MA0024.1:E2F1] | 7 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0036.1:Gata2] | 2 |
| MOTIF[MA0047.2:FOXA2] | 3 |
| MOTIF[MA0058.1:Max] | 16 |
| MOTIF[MA0059.1:Cmyc] | 3 |
| MOTIF[MA0062.1:Gabp] | 6 |
| MOTIF[MA0062.2:Gabp] | 24 |
| MOTIF[MA0079.1:SP1] | 11 |
| MOTIF[MA0079.2:SP1] | 16 |
| MOTIF[MA0080.1:PU1] | 2 |
| MOTIF[MA0080.2:PU1] | 3 |
| MOTIF[MA0083.1:Srf] | 2 |
| MOTIF[MA0093.1:USF1] | 12 |
| MOTIF[MA0095.1:Yy1] | 14 |
| MOTIF[MA0099.1:Cfos] | 4 |
| MOTIF[MA0099.2:AP1] | 3 |
| MOTIF[MA0114.1:HNF4A] | 13 |
| MOTIF[MA0138.1:Nrsf] | 2 |
| MOTIF[MA0138.2:Nrsf] | 9 |
| MOTIF[MA0139.1:CTCF] | 134 |
| MOTIF[MA0140.1:Tal1] | 1 |
| MOTIF[MA0147.1:Cmyc] | 9 |
| MOTIF[MA0148.1:FOXA1] | 2 |
| MOTIF[MA0154.1:EBF] | 4 |
| MOTIF[MA0159.1:RXR] | 4 |
| MOTIF[MA0162.1:Egr1] | 32 |
| NON_SYNONYMOUS_CODING | 10349 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 215 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 257 |
| SPLICE_SITE_REGION | 29 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 228 |
| START_GAINED | 336 |
| START_LOST | 11 |
| STOP_GAINED | 98 |
| STOP_LOST | 21 |
| STOP_LOST+SPLICE_SITE_REGION | 1 |
| SYNONYMOUS_CODING | 11143 |
| SYNONYMOUS_STOP | 8 |
| None | 0 |
| Type | Total Variants |
|---|---|
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 174991 |
| Quality | Value |
|---|---|
| Min | 30.04 |
| Average | 432.166982873155 |
| Max | 15093.77 |
| Read Depth | Value |
|---|---|
| Min | 0 |
| Average | 18.789200587458783 |
| Max | 549 |
| Type | Total Variants |
|---|---|
| None | 0 |