Name: snps raw-variants selected
Variants: 219749
Novel Variants: 2731 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 219749 131175 0/1 87702 1/1 872 1/2
Total Gene-associated SNVs 219749 131175 0/1 87702 1/1 872 1/2

Type Total Variants
22
CODON_CHANGE_PLUS_CODON_DELETION123
CODON_CHANGE_PLUS_CODON_INSERTION79
CODON_DELETION52
CODON_INSERTION68
FRAME_SHIFT166
FRAME_SHIFT+SPLICE_SITE_REGION41
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST2
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF_DELETED3
MOTIF[MA0003.1:Ap2alpha]33
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]26
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]17
MOTIF[MA0062.2:Gabp]34
MOTIF[MA0065.1:PPARG]3
MOTIF[MA0079.1:SP1]11
MOTIF[MA0079.2:SP1]38
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]11
MOTIF[MA0095.1:Yy1]12
MOTIF[MA0099.1:Cfos]3
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]13
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]14
MOTIF[MA0139.1:CTCF]142
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]13
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]5
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]42
NON_SYNONYMOUS_CODING10059
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION218
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS244
SPLICE_SITE_REGION44
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING243
START_GAINED359
START_LOST13
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED62
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST28
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING10985
SYNONYMOUS_STOP8
TRANSCRIPT1
None0

Type Total Variants
1678
MISSENSE10319
NONSENSE63
SILENT11236
None0

Type Total Variants
HIGH572
LOW11834
MODERATE10602
MODIFIER288
None0

Type Total Variants
PASS219749

Quality Value
Min50.03
Average1220.21513367868
Max45358.73

Read Depth Value
Min5
Average54.866916345466876
Max200

Type Total Variants
None0

Chromossome Total Variants
121415
1010016
1112977
1211470
135166
147382
157255
169110
1711287
184094
1913034
216527
205790
213573
225205
312213
410377
510140
610183
711802
88403
99155
M22
X2518
Y635