Name: ca
Variants: 354922
Novel Variants: 8414 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 354922 115851 0/1 238842 1/1 229 1/2
Total Gene-associated SNVs 354922 115851 0/1 238842 1/1 229 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION89
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION2
CODON_CHANGE_PLUS_CODON_INSERTION55
CODON_DELETION39
CODON_INSERTION37
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT153
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
MOTIF[MA0003.1:Ap2alpha]42
MOTIF[MA0014.1:Pax5]10
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]7
MOTIF[MA0047.1:FOXA2]4
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]43
MOTIF[MA0059.1:Cmyc]8
MOTIF[MA0062.1:Gabp]12
MOTIF[MA0062.2:Gabp]48
MOTIF[MA0065.1:PPARG]4
MOTIF[MA0079.1:SP1]13
MOTIF[MA0079.2:SP1]43
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]6
MOTIF[MA0093.1:USF1]25
MOTIF[MA0095.1:Yy1]17
MOTIF[MA0099.1:Cfos]5
MOTIF[MA0099.2:AP1]7
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]18
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]21
MOTIF[MA0139.1:CTCF]247
MOTIF[MA0140.1:Tal1]4
MOTIF[MA0147.1:Cmyc]25
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]7
MOTIF[MA0159.1:RXR]3
MOTIF[MA0162.1:Egr1]61
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING11175
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION247
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS252
SPLICE_SITE_REGION44
SPLICE_SITE_REGION+SYNONYMOUS_CODING255
START_GAINED405
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED97
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11625
SYNONYMOUS_STOP11
TRANSCRIPT2
None0

Type Total Variants
1832
MISSENSE11465
NONSENSE98
SILENT11891
None0

Type Total Variants
HIGH595
LOW12571
MODERATE11645
MODIFIER475
None0

Type Total Variants
.354922

Quality Value
Min30.19
Average435.671190853231
Max35573.29

Read Depth Value
Min2
Average19.489561086661293
Max250

Type Total Variants
None0

Chromossome Total Variants
131307
1018179
1120029
1216809
139564
1411530
1512395
1614418
1715071
188244
1914937
226256
208792
215674
228080
319840
418234
517530
621252
718858
815681
914558
MT40
X7330
Y314