Name: 17-11096s1 germline-multisample gatk annotated 17-11097s2
Variants: 96377
Novel Variants: 2781 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION154
CODON_CHANGE_PLUS_CODON_INSERTION99
CODON_DELETION69
CODON_INSERTION78
FRAME_SHIFT257
FRAME_SHIFT+SPLICE_SITE_REGION43
FRAME_SHIFT+START_LOST6
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST4
GENE_FUSION_REVERESE1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]21
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]11
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]23
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]17
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]4
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]8
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]47
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]2
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]27
NON_SYNONYMOUS_CODING12123
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION243
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS281
SPLICE_SITE_REGION51
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING282
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED268
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED95
STOP_GAINED+CODON_INSERTION1
STOP_LOST23
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING13186
SYNONYMOUS_STOP11
TRANSCRIPT3
None0

Type Total Variants
1527
MISSENSE12403
NONSENSE95
SILENT13480
None0

Type Total Variants
HIGH732
LOW13911
MODERATE12768
MODIFIER94
None0

Type Total Variants
.96377

Quality Value
Min30.26
Average9725.69078783559
Max222316.0

Read Depth Value
Min0
Average99.6981022443114
Max3488

Type Total Variants
None0
-62
2_51
-5_-51
5_5_21
2_3_21
3_2,3_21
3,37
2,211
-56
5_21
2_2,2_23
41
6_21
5,51
2_247
2212
3116
63
-5,-51
535
5_5_2_21
2_41
2_2_24
5_2_31
3_212
5_5_5_5_5_21
2_2_2_24
2_37
5_2_21

Chromossome Total Variants
110184
104057
115445
125033
131797
143049
153246
164016
175222
181680
196860
26608
202359
211459
222237
35331
43972
53983
65787
74744
83375
94005
X1926
Y2