Name: 62408779_s7 mvar 62408779_S7.FREEBAYES
Variants: 83016
Novel Variants: 10482 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION52
CODON_CHANGE_PLUS_CODON_INSERTION49
CODON_DELETION99
CODON_DELETION+SPLICE_SITE_REGION2
CODON_DELETION+SYNONYMOUS_CODING3
CODON_INSERTION90
FRAME_SHIFT174
FRAME_SHIFT+NON_SYNONYMOUS_CODING5
FRAME_SHIFT+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION1
FRAME_SHIFT+SPLICE_SITE_REGION46
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST5
FRAME_SHIFT+SYNONYMOUS_CODING1
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]20
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]8
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]17
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]19
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]56
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0154.1:EBF]1
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]14
NON_SYNONYMOUS_CODING11034
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
NON_SYNONYMOUS_CODING+CODON_INSERTION2
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION227
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS8
PROTEIN_STRUCTURAL_INTERACTION_LOCUS243
SPLICE_SITE_REGION24
SPLICE_SITE_REGION+SYNONYMOUS_CODING245
START_GAINED165
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED90
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST24
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11381
SYNONYMOUS_STOP14
TRANSCRIPT2
None0

Type Total Variants
1636
MISSENSE10881
NONSENSE86
SILENT11590
None0

Type Total Variants
HIGH617
LOW11923
MODERATE11559
MODIFIER94
None0

Type Total Variants
PASS83016

Quality Value
Min10.04
Average1128.92306181935
Max47230.8

Read Depth Value
Min2
Average67.6367206321673
Max3033

Type Total Variants
None0

Chromossome Total Variants
18229
103388
115067
124280
131380
142849
153015
163846
174768
181366
195749
25489
202084
211126
222272
34430
43200
53523
64945
74185
82910
93436
X1418
Y61