Name: chu17257-cha-zoe_s2
Variants: 9232
Novel Variants: 100 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 9232 5843 0/1 3356 1/1 33 1/2
Total Gene-associated SNVs 9232 5843 0/1 3356 1/1 33 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION25
CODON_CHANGE_PLUS_CODON_INSERTION21
CODON_DELETION9
CODON_INSERTION13
FRAME_SHIFT27
FRAME_SHIFT+SPLICE_SITE_REGION9
FRAME_SHIFT+STOP_LOST1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0139.1:CTCF]3
NON_SYNONYMOUS_CODING3121
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION78
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS127
SPLICE_SITE_REGION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING79
START_GAINED11
START_LOST4
STOP_GAINED24
STOP_LOST9
SYNONYMOUS_CODING3706
SYNONYMOUS_STOP2
None0

Type Total Variants
252
MISSENSE3212
NONSENSE24
SILENT3787
None0

Type Total Variants
HIGH204
LOW3802
MODERATE3267
MODIFIER2
None0

Type Total Variants
LowDP232
LowGQ20
LowGQ;LowDP58
LowGQ;LowGQX10
LowGQ;LowGQX;LowDP35
LowGQ;LowGQX;R81
LowGQ;LowGQX;SB;LowDP27
LowGQ;R84
LowGQ;R8;LowDP2
LowGQ;R8;SB2
LowGQ;R8;SB;LowDP1
LowGQ;SB1
LowGQ;SB;LowDP29
LowVariantFreq124
LowVariantFreq;LowDP3
LowVariantFreq;R814
LowVariantFreq;R8;SB5
LowVariantFreq;SB99
LowVariantFreq;SB;LowDP8
PASS8163
R8141
R8;LowDP6
R8;SB4
SB163
SB;LowDP80

Quality Value
Min10.33
Average1437.45234077123
Max14093.33

Read Depth Value
Min1
Average79.41161178509532
Max385

Type Total Variants
None0

Chromossome Total Variants
1812
10345
11568
12520
13194
14193
15333
16453
17479
18145
19542
2639
20198
21119
22220
3436
4413
5411
6938
7410
8287
9394
X179
Y4