Name: oje115-001 vqsr all
Variants: 53224
Novel Variants: 645 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 53224 35419 0/1 17621 1/1 184 1/2
Total Gene-associated SNVs 53224 35419 0/1 17621 1/1 184 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION145
CODON_CHANGE_PLUS_CODON_INSERTION84
CODON_DELETION60
CODON_INSERTION77
FRAME_SHIFT236
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED9
FRAME_SHIFT+STOP_LOST3
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]8
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0058.1:Max]5
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]7
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.2:SP1]3
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]4
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]19
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]12
NON_SYNONYMOUS_CODING11844
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION277
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS186
SPLICE_SITE_REGION15
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING274
START_GAINED120
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED93
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12614
SYNONYMOUS_STOP11
None0

Type Total Variants
1064
MISSENSE12163
NONSENSE95
SILENT12899
None0

Type Total Variants
HIGH618
LOW13079
MODERATE12491
MODIFIER33
None0

Type Total Variants
ABlow2273
DPhigh;ABlow659
DPhigh;FShigh74
DPhigh;FShigh;ABlow132
DPlow149
DPlow;ABlow1
DPlow;FShigh1
FShigh323
FShigh;ABlow248
PASS49364

Quality Value
Min30.23
Average55935.9702654786
Max1166742.63

Read Depth Value
Min0
Average90.88287238839621
Max1070

Type Total Variants
None0
41
2|22
26
31

Chromossome Total Variants
14929
102379
113354
122753
13925
141981
151854
162213
172942
18865
193661
23557
201317
21757
221438
32660
42010
52359
63645
72716
81789
92085
MT89
X928
Y18