Name: manuela_niro
Variants: 31098
Novel Variants: 1156 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 41 |
CODON_CHANGE_PLUS_CODON_INSERTION | 18 |
CODON_DELETION | 20 |
CODON_INSERTION | 25 |
FRAME_SHIFT | 108 |
FRAME_SHIFT+SPLICE_SITE_REGION | 8 |
MOTIF[MA0003.1:Ap2alpha] | 5 |
MOTIF[MA0058.1:Max] | 1 |
MOTIF[MA0059.1:Cmyc] | 1 |
MOTIF[MA0062.1:Gabp] | 2 |
MOTIF[MA0062.2:Gabp] | 9 |
MOTIF[MA0079.1:SP1] | 1 |
MOTIF[MA0079.2:SP1] | 2 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0093.1:USF1] | 2 |
MOTIF[MA0095.1:Yy1] | 2 |
MOTIF[MA0139.1:CTCF] | 16 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0154.1:EBF] | 2 |
MOTIF[MA0159.1:RXR] | 1 |
MOTIF[MA0162.1:Egr1] | 4 |
NON_SYNONYMOUS_CODING | 5419 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 117 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 3 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 109 |
SPLICE_SITE_REGION | 11 |
SPLICE_SITE_REGION+CODON_DELETION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 124 |
START_GAINED | 89 |
START_LOST | 9 |
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
STOP_GAINED | 53 |
STOP_GAINED+CODON_INSERTION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 4 |
STOP_LOST+SPLICE_SITE_REGION | 1 |
SYNONYMOUS_CODING | 5990 |
SYNONYMOUS_STOP | 6 |
None | 0 |
Type | Total Variants |
---|---|
None | 0 |
Type | Total Variants |
---|---|
PASS | 31098 |
Quality | Value |
---|---|
Min | 10.0 |
Average | 395.663731429675 |
Max | 3853.67 |
Read Depth | Value |
---|---|
Min | 5 |
Average | 136.16200398739468 |
Max | 1401 |