Name: muestra1_s1
Variants: 8942
Novel Variants: 245 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 24 |
CODON_CHANGE_PLUS_CODON_INSERTION | 18 |
CODON_DELETION | 8 |
CODON_INSERTION | 11 |
FRAME_SHIFT | 19 |
FRAME_SHIFT+SPLICE_SITE_REGION | 10 |
FRAME_SHIFT+START_LOST | 1 |
FRAME_SHIFT+STOP_LOST | 1 |
MOTIF[MA0024.1:E2F1] | 1 |
MOTIF[MA0062.1:Gabp] | 1 |
MOTIF[MA0079.2:SP1] | 1 |
MOTIF[MA0139.1:CTCF] | 2 |
NON_SYNONYMOUS_CODING | 2987 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 91 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 1 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 70 |
SPLICE_SITE_REGION | 4 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 78 |
START_GAINED | 11 |
START_LOST | 4 |
STOP_GAINED | 25 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 7 |
SYNONYMOUS_CODING | 3680 |
SYNONYMOUS_STOP | 2 |
None | 0 |
Type | Total Variants |
---|---|
LowGQ;LowGQX | 129 |
LowGQ;LowGQX;LowMQ | 1 |
LowGQ;LowGQX;LowMQ;LowQD;SB | 12 |
LowGQ;LowGQX;LowMQ;SB | 4 |
LowGQ;LowGQX;SB | 50 |
LowGQX | 13 |
LowGQX;LowMQ;LowQD;SB | 7 |
LowGQX;LowQD | 69 |
LowGQX;LowQD;SB | 142 |
LowGQX;SB | 13 |
LowMQ | 3 |
LowMQ;LowQD | 4 |
LowMQ;LowQD;SB | 12 |
LowMQ;SB | 5 |
LowQD | 117 |
LowQD;SB | 111 |
PASS | 8052 |
SB | 198 |
Quality | Value |
---|---|
Min | 3.08 |
Average | 1563.7333583091 |
Max | 21261.01 |
Read Depth | Value |
---|---|
Min | 1 |
Average | 81.93659136658465 |
Max | 331 |