Name: 0010dbs 0_bwamem sort rmdup readfiltered realn recal 0_gatk_hc
Variants: 58643
Novel Variants: 435 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 58643 39254 0/1 19273 1/1 116 1/2
Total Gene-associated SNVs 58643 39254 0/1 19273 1/1 116 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION112
CODON_CHANGE_PLUS_CODON_INSERTION82
CODON_DELETION59
CODON_INSERTION74
FRAME_SHIFT217
FRAME_SHIFT+SPLICE_SITE_REGION41
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST3
FRAME_SHIFT+STOP_LOST+SPLICE_SITE_REGION1
GENE_FUSION2
MOTIF[MA0003.1:Ap2alpha]6
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]5
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]10
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]8
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0139.1:CTCF]21
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0162.1:Egr1]8
NON_SYNONYMOUS_CODING10566
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION197
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS162
SPLICE_SITE_REGION18
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING224
START_GAINED197
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION2
START_LOST+CODON_DELETION1
STOP_GAINED89
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST18
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING11942
SYNONYMOUS_STOP5
TRANSCRIPT2
None0

Type Total Variants
1072
MISSENSE10797
NONSENSE90
SILENT12171
None0

Type Total Variants
HIGH564
LOW12433
MODERATE11093
MODIFIER40
None0

Type Total Variants
FSFilter10
FSFilter;QDFilter7
MQFilter45
PASS58214
QDFilter317
QDFilter;SnpCluster3
SnpCluster47

Quality Value
Min30.73
Average2042.68536500438
Max39984.77

Read Depth Value
Min0
Average95.32764353801818
Max1134

Type Total Variants
None0
2|21
25

Chromossome Total Variants
15369
102397
114011
122711
13956
142071
151827
162564
173385
18894
194266
23949
201637
21764
221452
33171
42270
52402
63673
73304
82158
92188
X1221
Y3