Name: lb9428 final
Variants: 162091
Novel Variants: 11927 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 213 |
CODON_CHANGE_PLUS_CODON_INSERTION | 206 |
CODON_DELETION | 68 |
CODON_INSERTION | 187 |
FRAME_SHIFT | 994 |
FRAME_SHIFT+SPLICE_SITE_REGION | 94 |
FRAME_SHIFT+START_LOST | 7 |
FRAME_SHIFT+STOP_GAINED | 14 |
FRAME_SHIFT+STOP_LOST | 7 |
GENE_FUSION | 1 |
GENE_FUSION_REVERESE | 8 |
MOTIF_DELETED | 7 |
MOTIF[MA0003.1:Ap2alpha] | 21 |
MOTIF[MA0014.1:Pax5] | 9 |
MOTIF[MA0016.1:RXRA] | 2 |
MOTIF[MA0024.1:E2F1] | 3 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0036.1:Gata2] | 1 |
MOTIF[MA0047.1:FOXA2] | 3 |
MOTIF[MA0058.1:Max] | 22 |
MOTIF[MA0059.1:Cmyc] | 2 |
MOTIF[MA0062.1:Gabp] | 5 |
MOTIF[MA0062.2:Gabp] | 35 |
MOTIF[MA0065.1:PPARG] | 2 |
MOTIF[MA0079.1:SP1] | 5 |
MOTIF[MA0079.2:SP1] | 24 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0080.2:PU1] | 3 |
MOTIF[MA0083.1:Srf] | 2 |
MOTIF[MA0093.1:USF1] | 5 |
MOTIF[MA0095.1:Yy1] | 13 |
MOTIF[MA0099.1:Cfos] | 2 |
MOTIF[MA0099.2:AP1] | 3 |
MOTIF[MA0114.1:HNF4A] | 6 |
MOTIF[MA0138.1:Nrsf] | 1 |
MOTIF[MA0138.2:Nrsf] | 8 |
MOTIF[MA0139.1:CTCF] | 84 |
MOTIF[MA0140.1:Tal1] | 1 |
MOTIF[MA0147.1:Cmyc] | 8 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0154.1:EBF] | 3 |
MOTIF[MA0159.1:RXR] | 1 |
MOTIF[MA0162.1:Egr1] | 45 |
NON_SYNONYMOUS_CODING | 11195 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 244 |
NON_SYNONYMOUS_START | 2 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 2 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 138 |
SPLICE_SITE_REGION | 55 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
SPLICE_SITE_REGION+CODON_DELETION | 2 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 259 |
START_GAINED | 286 |
START_LOST | 7 |
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
START_LOST+CODON_DELETION | 1 |
STOP_GAINED | 98 |
STOP_GAINED+CODON_INSERTION | 3 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION | 1 |
STOP_LOST | 25 |
STOP_LOST+CODON_DELETION | 1 |
STOP_LOST+SPLICE_SITE_REGION | 3 |
SYNONYMOUS_CODING | 11654 |
SYNONYMOUS_STOP | 10 |
TRANSCRIPT | 2 |
None | 0 |
Type | Total Variants |
---|---|
DP10 | 10754 |
DP10;FilterSexChrom | 15 |
DP10;FilterSexChrom;GQ30.00 | 463 |
DP10;FilterSexChrom;GQ30.00;TruthSensitivityTranche99.00to99.90 | 131 |
DP10;FilterSexChrom;GQ30.00;TruthSensitivityTranche99.90to100.00 | 317 |
DP10;FilterSexChrom;TruthSensitivityTranche99.00to99.90 | 15 |
DP10;FilterSexChrom;TruthSensitivityTranche99.90to100.00 | 31 |
DP10;GQ30.00 | 26424 |
DP10;GQ30.00;TruthSensitivityTranche99.00to99.90 | 4731 |
DP10;GQ30.00;TruthSensitivityTranche99.90to100.00 | 9020 |
DP10;TruthSensitivityTranche99.00to99.90 | 1150 |
DP10;TruthSensitivityTranche99.90to100.00 | 2134 |
FilterSexChrom | 667 |
FilterSexChrom;GQ30.00 | 34 |
FilterSexChrom;GQ30.00;TruthSensitivityTranche99.00to99.90 | 47 |
FilterSexChrom;GQ30.00;TruthSensitivityTranche99.90to100.00 | 235 |
FilterSexChrom;TruthSensitivityTranche99.00to99.90 | 186 |
FilterSexChrom;TruthSensitivityTranche99.90to100.00 | 503 |
GQ30.00 | 1095 |
GQ30.00;TruthSensitivityTranche99.00to99.90 | 1078 |
GQ30.00;TruthSensitivityTranche99.90to100.00 | 8189 |
PASS | 62356 |
TruthSensitivityTranche99.00to99.90 | 9224 |
TruthSensitivityTranche99.90to100.00 | 23292 |
Quality | Value |
---|---|
Min | 30.01 |
Average | 74264.9605184114 |
Max | 4070140.73 |
Read Depth | Value |
---|---|
Min | 1 |
Average | 42.61113818780808 |
Max | 250 |