Name: goku_snps_indels
Variants: 144302
Novel Variants: 2566 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 144302 88853 0/1 54560 1/1 889 1/2
Total Gene-associated SNVs 144302 88853 0/1 54560 1/1 889 1/2

Type Total Variants
31
CODON_CHANGE_PLUS_CODON_DELETION144
CODON_CHANGE_PLUS_CODON_INSERTION95
CODON_DELETION37
CODON_INSERTION76
FRAME_SHIFT280
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST3
FRAME_SHIFT+STOP_LOST+SPLICE_SITE_REGION1
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF_DELETED7
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]15
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]10
MOTIF[MA0062.2:Gabp]26
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]23
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]9
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]82
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0154.1:EBF]3
MOTIF[MA0162.1:Egr1]33
NON_SYNONYMOUS_CODING10441
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION224
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS150
SPLICE_SITE_REGION49
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING255
START_GAINED282
START_LOST13
STOP_GAINED88
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11222
SYNONYMOUS_STOP15
TRANSCRIPT3
None0

Type Total Variants
1493
MISSENSE10707
NONSENSE90
SILENT11492
None0

Type Total Variants
HIGH620
LOW11969
MODERATE11021
MODIFIER172
None0

Type Total Variants
PASS144302

Quality Value
Min30.1
Average1471.19842954616
Max117436.0

Read Depth Value
Min0
Average75.76914387880971
Max3661

Type Total Variants
None0
41
2|21
31
5|52

Chromossome Total Variants
114245
106274
118918
127967
133086
145233
154635
166023
177982
182448
199066
210958
203780
212198
223513
37961
46213
56494
66637
77540
85304
95905
M31
X1828
Y63