Name: 63084816_s277 hpcl fboth pass
Variants: 162155
Novel Variants: 6701 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 162155 102821 0/1 57278 1/1 2056 1/2
Total Gene-associated SNVs 162155 102821 0/1 57278 1/1 2056 1/2

Type Total Variants
10
CODON_CHANGE_PLUS_CODON_DELETION167
CODON_CHANGE_PLUS_CODON_INSERTION103
CODON_DELETION58
CODON_INSERTION74
FRAME_SHIFT320
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST6
FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST4
GENE_FUSION_REVERESE1
MOTIF_DELETED7
MOTIF[MA0003.1:Ap2alpha]23
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]21
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]10
MOTIF[MA0062.2:Gabp]18
MOTIF[MA0065.1:PPARG]4
MOTIF[MA0079.1:SP1]11
MOTIF[MA0079.2:SP1]31
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]7
MOTIF[MA0095.1:Yy1]13
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]11
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]129
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]14
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]8
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]43
NON_SYNONYMOUS_CODING11576
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION235
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS245
SPLICE_SITE_REGION45
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING252
START_GAINED345
START_LOST8
START_LOST+CODON_DELETION1
STOP_GAINED123
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11897
SYNONYMOUS_STOP14
TRANSCRIPT4
None0

Type Total Variants
1830
MISSENSE11843
NONSENSE126
SILENT12163
None0

Type Total Variants
HIGH788
LOW12748
MODERATE12215
MODIFIER211
None0

Type Total Variants
PASS162155

Quality Value
Min10.35
Average927.535915513411
Max219387.0

Read Depth Value
Min1
Average50.24993370540532
Max6207

Type Total Variants
None0

Chromossome Total Variants
115270
107184
119339
128971
133258
145451
154971
167037
179501
182774
1910764
211955
203875
212188
223621
39354
46727
56996
69048
78915
85659
96598
M10
X2683
Y6