Name: 63084816_s277 hpcl fboth pass
Variants: 162155
Novel Variants: 6701 (Not in latest DbSNP Build)
| Type | Total Variants | |||
|---|---|---|---|---|
| Total SNVs | 162155 | 102821 0/1 | 57278 1/1 | 2056 1/2 |
| Total Gene-associated SNVs | 162155 | 102821 0/1 | 57278 1/1 | 2056 1/2 |
| Type | Total Variants |
|---|---|
| 10 | |
| CODON_CHANGE_PLUS_CODON_DELETION | 167 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 103 |
| CODON_DELETION | 58 |
| CODON_INSERTION | 74 |
| FRAME_SHIFT | 320 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 42 |
| FRAME_SHIFT+START_LOST | 6 |
| FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION | 1 |
| FRAME_SHIFT+STOP_GAINED | 5 |
| FRAME_SHIFT+STOP_LOST | 4 |
| GENE_FUSION_REVERESE | 1 |
| MOTIF_DELETED | 7 |
| MOTIF[MA0003.1:Ap2alpha] | 23 |
| MOTIF[MA0014.1:Pax5] | 4 |
| MOTIF[MA0016.1:RXRA] | 3 |
| MOTIF[MA0024.1:E2F1] | 7 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0036.1:Gata2] | 2 |
| MOTIF[MA0047.1:FOXA2] | 1 |
| MOTIF[MA0047.2:FOXA2] | 2 |
| MOTIF[MA0058.1:Max] | 21 |
| MOTIF[MA0059.1:Cmyc] | 3 |
| MOTIF[MA0062.1:Gabp] | 10 |
| MOTIF[MA0062.2:Gabp] | 18 |
| MOTIF[MA0065.1:PPARG] | 4 |
| MOTIF[MA0079.1:SP1] | 11 |
| MOTIF[MA0079.2:SP1] | 31 |
| MOTIF[MA0080.1:PU1] | 1 |
| MOTIF[MA0080.2:PU1] | 3 |
| MOTIF[MA0093.1:USF1] | 7 |
| MOTIF[MA0095.1:Yy1] | 13 |
| MOTIF[MA0099.1:Cfos] | 2 |
| MOTIF[MA0099.2:AP1] | 2 |
| MOTIF[MA0105.1:NFKB] | 1 |
| MOTIF[MA0114.1:HNF4A] | 11 |
| MOTIF[MA0115.1:RNR1H2] | 1 |
| MOTIF[MA0138.2:Nrsf] | 5 |
| MOTIF[MA0139.1:CTCF] | 129 |
| MOTIF[MA0140.1:Tal1] | 1 |
| MOTIF[MA0147.1:Cmyc] | 14 |
| MOTIF[MA0148.1:FOXA1] | 2 |
| MOTIF[MA0154.1:EBF] | 8 |
| MOTIF[MA0159.1:RXR] | 1 |
| MOTIF[MA0162.1:Egr1] | 43 |
| NON_SYNONYMOUS_CODING | 11576 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 235 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 245 |
| SPLICE_SITE_REGION | 45 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 252 |
| START_GAINED | 345 |
| START_LOST | 8 |
| START_LOST+CODON_DELETION | 1 |
| STOP_GAINED | 123 |
| STOP_GAINED+CODON_INSERTION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION | 3 |
| STOP_LOST | 22 |
| STOP_LOST+SPLICE_SITE_REGION | 2 |
| SYNONYMOUS_CODING | 11897 |
| SYNONYMOUS_STOP | 14 |
| TRANSCRIPT | 4 |
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 162155 |
| Quality | Value |
|---|---|
| Min | 10.35 |
| Average | 927.535915513415 |
| Max | 219387.0 |
| Read Depth | Value |
|---|---|
| Min | 1 |
| Average | 50.24993370540532 |
| Max | 6207 |
| Type | Total Variants |
|---|---|
| None | 0 |