Name: paolo_maccallini_snp
Variants: 112135
Novel Variants: 901 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 112135 65204 0/1 46899 1/1 32 1/2
Total Gene-associated SNVs 112135 65204 0/1 46899 1/1 32 1/2

Type Total Variants
27
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]16
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0079.1:SP1]7
MOTIF[MA0079.2:SP1]14
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]9
MOTIF[MA0139.1:CTCF]77
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]7
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]25
NON_SYNONYMOUS_CODING10202
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION206
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS239
SPLICE_SITE_REGION34
SPLICE_SITE_REGION+SYNONYMOUS_CODING229
START_GAINED298
START_LOST10
STOP_GAINED90
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10954
SYNONYMOUS_STOP11
None0

Type Total Variants
840
MISSENSE10446
NONSENSE93
SILENT11194
None0

Type Total Variants
HIGH374
LOW11610
MODERATE10408
MODIFIER181
None0

Type Total Variants
PASS112135

Quality Value
Min10.2
Average1641.22037330053
Max94234.8

Read Depth Value
Min0
Average82.07252864850403
Max2758

Type Total Variants
None0

Chromossome Total Variants
111219
104943
117422
126384
132215
144062
153718
164510
176170
182045
197375
28262
202916
211623
222749
35975
44930
54835
64989
76035
84008
94480
M27
X1219
Y24