Name: paolo_maccallini_snp
Variants: 112135
Novel Variants: 901 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| 27 | |
| MOTIF[MA0003.1:Ap2alpha] | 18 |
| MOTIF[MA0014.1:Pax5] | 4 |
| MOTIF[MA0016.1:RXRA] | 3 |
| MOTIF[MA0024.1:E2F1] | 6 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0036.1:Gata2] | 2 |
| MOTIF[MA0058.1:Max] | 10 |
| MOTIF[MA0059.1:Cmyc] | 2 |
| MOTIF[MA0062.1:Gabp] | 4 |
| MOTIF[MA0062.2:Gabp] | 16 |
| MOTIF[MA0065.1:PPARG] | 2 |
| MOTIF[MA0065.2:PPARG] | 2 |
| MOTIF[MA0079.1:SP1] | 7 |
| MOTIF[MA0079.2:SP1] | 14 |
| MOTIF[MA0080.1:PU1] | 1 |
| MOTIF[MA0080.2:PU1] | 2 |
| MOTIF[MA0093.1:USF1] | 4 |
| MOTIF[MA0095.1:Yy1] | 5 |
| MOTIF[MA0099.1:Cfos] | 1 |
| MOTIF[MA0099.2:AP1] | 1 |
| MOTIF[MA0114.1:HNF4A] | 7 |
| MOTIF[MA0138.1:Nrsf] | 1 |
| MOTIF[MA0138.2:Nrsf] | 9 |
| MOTIF[MA0139.1:CTCF] | 77 |
| MOTIF[MA0140.1:Tal1] | 1 |
| MOTIF[MA0147.1:Cmyc] | 7 |
| MOTIF[MA0154.1:EBF] | 4 |
| MOTIF[MA0159.1:RXR] | 1 |
| MOTIF[MA0162.1:Egr1] | 25 |
| NON_SYNONYMOUS_CODING | 10202 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 206 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 239 |
| SPLICE_SITE_REGION | 34 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 229 |
| START_GAINED | 298 |
| START_LOST | 10 |
| STOP_GAINED | 90 |
| STOP_GAINED+SPLICE_SITE_REGION | 3 |
| STOP_LOST | 24 |
| STOP_LOST+SPLICE_SITE_REGION | 3 |
| SYNONYMOUS_CODING | 10954 |
| SYNONYMOUS_STOP | 11 |
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 112135 |
| Quality | Value |
|---|---|
| Min | 10.2 |
| Average | 1641.22037330053 |
| Max | 94234.8 |
| Read Depth | Value |
|---|---|
| Min | 0 |
| Average | 82.07252864850403 |
| Max | 2758 |
| Type | Total Variants |
|---|---|
| None | 0 |