Name: gird-c1a filtered variants
Variants: 85757
Novel Variants: 659 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 85757 51091 0/1 34479 1/1 187 1/2
Total Gene-associated SNVs 85757 51091 0/1 34479 1/1 187 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION113
CODON_CHANGE_PLUS_CODON_INSERTION77
CODON_DELETION40
CODON_INSERTION66
FRAME_SHIFT197
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST1
GENE_FUSION_REVERESE2
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]17
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]10
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]21
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]12
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]46
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]19
NON_SYNONYMOUS_CODING9843
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION198
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS143
SPLICE_SITE_REGION26
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING231
START_GAINED261
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED85
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST21
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10718
SYNONYMOUS_STOP8
TRANSCRIPT3
None0

Type Total Variants
1159
MISSENSE10077
NONSENSE86
SILENT10957
None0

Type Total Variants
HIGH517
LOW11336
MODERATE10338
MODIFIER88
None0

Type Total Variants
MG_INDEL_Filter111
MG_SNP_Filter654
PASS84992

Quality Value
Min30.29
Average1274.68533658993
Max36795.77

Read Depth Value
Min0
Average61.1093205219399
Max1093

Type Total Variants
None0
2|22
24

Chromossome Total Variants
18384
103620
115890
124617
131704
142971
152872
163658
175033
181517
195382
26247
202304
211266
221998
34658
43477
53919
63878
74922
83103
93315
X1010
Y12