Name: 1-p159 final
Variants: 105659
Novel Variants: 1501 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 105659 66449 0/1 38994 1/1 216 1/2
Total Gene-associated SNVs 105659 66449 0/1 38994 1/1 216 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION143
CODON_CHANGE_PLUS_CODON_INSERTION97
CODON_DELETION59
CODON_INSERTION85
FRAME_SHIFT237
FRAME_SHIFT+SPLICE_SITE_REGION39
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
GENE_FUSION_REVERESE2
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]17
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]11
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]27
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]17
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]11
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]76
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]8
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]30
NON_SYNONYMOUS_CODING11444
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION245
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS159
SPLICE_SITE_REGION26
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING258
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED234
START_LOST12
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED101
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST21
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING12203
SYNONYMOUS_STOP10
TRANSCRIPT3
None0

Type Total Variants
1352
MISSENSE11727
NONSENSE103
SILENT12472
None0

Type Total Variants
HIGH593
LOW12854
MODERATE12076
MODIFIER131
None0

Type Total Variants
MG_INDEL_Filter98
MG_SNP_Filter3922
PASS101639

Quality Value
Min30.04
Average1040.46145193442
Max69815.77

Read Depth Value
Min0
Average54.792275149301055
Max2372

Type Total Variants
None0
41
2|21
24
31
5|51

Chromossome Total Variants
110348
104754
116703
125869
131920
143963
153767
164710
175903
181743
197179
27215
202724
211611
222775
35605
44157
54558
64579
75683
83916
94322
X1655