Name: 8754_onol_s2_vs_onol_n_ucla TUMOR
Variants: 60231
Novel Variants: 40194 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 60231 60231 0/1
Total Gene-associated SNVs 60231 60231 0/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION364
CODON_CHANGE_PLUS_CODON_INSERTION42
CODON_DELETION156
CODON_INSERTION59
FRAME_SHIFT481
FRAME_SHIFT+SPLICE_SITE_REGION17
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED27
MOTIF_DELETED3
MOTIF[MA0003.1:Ap2alpha]7
MOTIF[MA0005.1:MEF2C]1
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]4
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]6
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]6
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]51
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0154.1:EBF]3
MOTIF[MA0162.1:Egr1]14
NON_SYNONYMOUS_CODING8129
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION241
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS160
SPLICE_SITE_REGION16
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION2
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_INSERTION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING87
START_GAINED144
START_LOST8
START_LOST+CODON_DELETION3
START_LOST+SPLICE_SITE_REGION1
STOP_GAINED554
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION8
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION25
STOP_GAINED+SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_LOST12
SYNONYMOUS_CODING3558
SYNONYMOUS_STOP1
TRANSCRIPT1
None0

Type Total Variants
1629
MISSENSE8392
NONSENSE579
SILENT3646
None0

Type Total Variants
HIGH1305
LOW3869
MODERATE8996
MODIFIER76
None0

Type Total Variants
alt_allele_in_normal2231
alt_allele_in_normal;clustered_events7056
alt_allele_in_normal;clustered_events;germline_risk467
alt_allele_in_normal;clustered_events;germline_risk;str_contraction8
alt_allele_in_normal;clustered_events;germline_risk;str_contraction;t_lod_fstar4
alt_allele_in_normal;clustered_events;germline_risk;str_contraction;triallelic_site1
alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar117
alt_allele_in_normal;clustered_events;germline_risk;triallelic_site1
alt_allele_in_normal;clustered_events;str_contraction85
alt_allele_in_normal;clustered_events;str_contraction;t_lod_fstar41
alt_allele_in_normal;clustered_events;str_contraction;t_lod_fstar;triallelic_site2
alt_allele_in_normal;clustered_events;str_contraction;triallelic_site3
alt_allele_in_normal;clustered_events;t_lod_fstar1965
alt_allele_in_normal;clustered_events;t_lod_fstar;triallelic_site22
alt_allele_in_normal;clustered_events;triallelic_site78
alt_allele_in_normal;germline_risk206
alt_allele_in_normal;germline_risk;str_contraction23
alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar19
alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar;triallelic_site1
alt_allele_in_normal;germline_risk;str_contraction;triallelic_site3
alt_allele_in_normal;germline_risk;t_lod_fstar92
alt_allele_in_normal;germline_risk;t_lod_fstar;triallelic_site2
alt_allele_in_normal;germline_risk;triallelic_site3
alt_allele_in_normal;str_contraction356
alt_allele_in_normal;str_contraction;t_lod_fstar194
alt_allele_in_normal;str_contraction;t_lod_fstar;triallelic_site5
alt_allele_in_normal;str_contraction;triallelic_site20
alt_allele_in_normal;t_lod_fstar1756
alt_allele_in_normal;t_lod_fstar;triallelic_site10
alt_allele_in_normal;triallelic_site15
clustered_events598
clustered_events;germline_risk384
clustered_events;germline_risk;homologous_mapping_event1478
clustered_events;germline_risk;homologous_mapping_event;str_contraction8
clustered_events;germline_risk;homologous_mapping_event;str_contraction;t_lod_fstar1
clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar342
clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar;triallelic_site2
clustered_events;germline_risk;homologous_mapping_event;triallelic_site14
clustered_events;germline_risk;multi_event_alt_allele_in_normal26
clustered_events;germline_risk;multi_event_alt_allele_in_normal;str_contraction;t_lod_fstar1
clustered_events;germline_risk;multi_event_alt_allele_in_normal;t_lod_fstar18
clustered_events;germline_risk;multi_event_alt_allele_in_normal;t_lod_fstar;triallelic_site1
clustered_events;germline_risk;multi_event_alt_allele_in_normal;triallelic_site2
clustered_events;germline_risk;str_contraction4
clustered_events;germline_risk;str_contraction;t_lod_fstar3
clustered_events;germline_risk;t_lod_fstar216
clustered_events;germline_risk;t_lod_fstar;triallelic_site1
clustered_events;germline_risk;triallelic_site2
clustered_events;homologous_mapping_event1428
clustered_events;homologous_mapping_event;str_contraction13
clustered_events;homologous_mapping_event;str_contraction;t_lod_fstar6
clustered_events;homologous_mapping_event;t_lod_fstar2919
clustered_events;homologous_mapping_event;t_lod_fstar;triallelic_site8
clustered_events;homologous_mapping_event;triallelic_site5
clustered_events;multi_event_alt_allele_in_normal749
clustered_events;multi_event_alt_allele_in_normal;str_contraction13
clustered_events;multi_event_alt_allele_in_normal;str_contraction;t_lod_fstar13
clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar925
clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar;triallelic_site8
clustered_events;multi_event_alt_allele_in_normal;triallelic_site12
clustered_events;str_contraction40
clustered_events;str_contraction;t_lod_fstar46
clustered_events;t_lod_fstar2617
clustered_events;t_lod_fstar;triallelic_site3
clustered_events;triallelic_site2
germline_risk1357
germline_risk;homologous_mapping_event3
germline_risk;homologous_mapping_event;t_lod_fstar3
germline_risk;multi_event_alt_allele_in_normal2
germline_risk;multi_event_alt_allele_in_normal;triallelic_site1
germline_risk;str_contraction41
germline_risk;str_contraction;t_lod_fstar42
germline_risk;str_contraction;t_lod_fstar;triallelic_site1
germline_risk;str_contraction;triallelic_site2
germline_risk;t_lod_fstar1537
germline_risk;t_lod_fstar;triallelic_site6
germline_risk;triallelic_site31
homologous_mapping_event9
homologous_mapping_event;t_lod_fstar15
multi_event_alt_allele_in_normal32
multi_event_alt_allele_in_normal;str_contraction;t_lod_fstar2
multi_event_alt_allele_in_normal;t_lod_fstar29
multi_event_alt_allele_in_normal;t_lod_fstar;triallelic_site1
PASS4398
str_contraction376
str_contraction;t_lod_fstar518
str_contraction;triallelic_site4
t_lod_fstar25045
t_lod_fstar;triallelic_site29
triallelic_site53

Quality Value
Min0.0
Average0.0
Max0.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
16583
102453
112869
122625
13930
141733
151831
163491
173187
181065
193260
24589
201757
211301
221865
32964
42311
52200
62360
73413
81572
93398
MT5
X1954
Y515