##fileformat=VCFv4.2 ##FILTER= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##source=HaplotypeCaller #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT M21.14_15B68a chr1 6530965 rs111312565 C CG 13527.73 . AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.48;SOR=0.744 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,404:1.00:404:0,221:0,181:99:13565,1221,0:346 chr1 6579607 rs1556035 C T 1562.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DB;DP=200;ExcessHet=3.0103;FS=1.743;LikelihoodRankSum=0.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=1.828;SOR=0.800 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:115,85:0.425:200:58,33:57,52:99:1591,0,2333:79 chr1 6579653 rs41278014 G C 1433.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;DB;DP=128;ExcessHet=3.0103;FS=0.654;LikelihoodRankSum=-2.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-1.214;SOR=0.618 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:58,70:0.547:128:22,40:36,30:99:1462,0,1060:70 chr1 10318652 rs12402052 C G 12175.77 . AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.96;SOR=0.706 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,469:1.00:469:0,214:0,255:99:12204,1405,0:380 chr1 10322054 rs4846209 G A 9494.77 . AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.01;SOR=0.699 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,365:1.00:365:0,181:0,184:99:9523,1094,0:285 chr1 10327407 rs12141246 A T 11839.77 . AC=2;AF=1.00;AN=2;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.35;SOR=0.706 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,467:1.00:467:0,226:0,241:99:11868,1398,0:437 chr1 10328338 rs1339458 C T 11498.77 . AC=2;AF=1.00;AN=2;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.44;SOR=0.747 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,452:1.00:452:0,211:0,241:99:11527,1353,0:371 chr1 10342629 rs3748576 G A 7799.77 . AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.66;SOR=0.706 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,304:1.00:304:0,140:0,164:99:7828,911,0:239 chr1 10355834 rs3753037 C T 11019.77 . AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.63;SOR=0.712 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,430:1.00:430:0,231:0,199:99:11048,1289,0:355 chr1 10356562 rs2275424 C A 5934.77 . AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.58;SOR=0.728 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,232:1.00:232:0,117:0,115:99:5963,694,0:216 chr1 10357206 . AT A 1432.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DP=355;ExcessHet=3.0103;FS=2.644;LikelihoodRankSum=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=1.158;SOR=0.498 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:176,127:0.419:303:62,40:53,35:99:1470,0,2426:72 chr1 10357406 rs3748577 A G 5322.77 . AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.84;SOR=0.837 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,206:1.00:206:0,103:0,103:99:5351,615,0:171 chr1 10384176 rs200163420 C CTTGAAA 19354.73 . AC=2;AF=1.00;AN=2;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.36;SOR=0.780 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,432:1.00:432:0,195:0,237:99:19392,1298,0:351 chr1 10384711 . CT C 687.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;DP=168;ExcessHet=3.0103;FS=1.484;LikelihoodRankSum=-0.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=1.290;SOR=0.540 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:103,63:0.380:166:43,24:42,20:99:725,0,1948:42 chr1 10394536 rs2276100 C G 9715.77 . AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.30;SOR=0.704 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,384:1.00:384:0,178:0,206:99:9744,1150,0:342 chr1 10394764 rs115067562 C T 2945.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;DB;DP=288;ExcessHet=3.0103;FS=0.428;LikelihoodRankSum=1.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-1.329;SOR=0.661 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:137,149:0.521:286:76,67:61,82:99:2974,0,2582:129 chr1 10402009 . CAA C,CA 1338.73 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.260;DP=99;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.849;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=1.270;SOR=0.722 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/2:14,39,39:0.424,0.424:92:3,3,12:11,18,27:99:1376,529,845,376,0,427:21 chr1 10402177 . G A 3461.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;DP=398;ExcessHet=3.0103;FS=1.177;LikelihoodRankSum=-0.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=2.192;SOR=0.768 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:219,179:0.450:398:102,77:117,102:99:3490,0,4402:165 chr1 10408837 . AT A 1510.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;DP=413;ExcessHet=3.0103;FS=1.484;LikelihoodRankSum=-1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=1.122;SOR=0.595 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:258,115:0.308:373:109,48:102,46:99:1548,0,4932:88 chr1 10420918 rs3748578 G A 7958.77 . AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.51;SOR=0.719 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,312:1.00:312:0,143:0,169:99:7987,934,0:249 chr1 10420937 rs3748579 C T 9048.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.367;DB;DP=357;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=-1.965;SOR=0.728 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:2,352:0.994:354:0,161:2,191:99:9077,1011,0:291 chr1 10425063 . C CAA 828.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;DP=95;ExcessHet=3.0103;FS=1.165;LikelihoodRankSum=-1.206;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=13.59;ReadPosRankSum=0.719;SOR=0.937 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:26,35:0.574:61:6,7:11,22:99:866,0,492:29 chr1 10425117 rs34161257 AT A 6663.73 . AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.98;QD=30.29;SOR=1.002 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,220:1.00:220:0,103:0,117:99:6701,661,0:212 chr1 10428452 rs12130563 G A 7370.77 . AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.14;SOR=0.797 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,282:1.00:282:0,159:0,123:99:7399,845,0:266 chr1 10431158 rs17411502 T C 11858.77 . AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.24;SOR=0.757 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,452:1.00:452:0,220:0,232:99:11887,1360,0:421 chr1 10435170 rs11121551 T C 11815.77 . AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.03;SOR=0.720 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,454:1.00:454:0,219:0,235:99:11844,1360,0:348 chr1 10435324 rs11121552 C A 13195.77 . AC=2;AF=1.00;AN=2;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.23;SOR=0.705 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,523:1.00:523:0,281:0,242:99:13224,1566,0:399 chr1 12056440 rs2236056 C T 5095.77 . AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.35;SOR=0.744 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,201:1.00:201:0,75:0,126:99:5124,602,0:168 chr1 12062205 rs2236057 A G 6864.77 . AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.71;SOR=0.762 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,267:1.00:267:0,130:0,137:99:6893,800,0:216 chr1 12067044 rs7550536 T G 2780.77 . AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.00;SOR=0.836 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,103:1.00:103:0,65:0,38:99:2809,309,0:103 chr1 12071680 rs1042842 A G 3940.77 . AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.59;SOR=0.719 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,154:1.00:154:0,68:0,86:99:3969,461,0:131 chr1 21887290 rs1767430 C A 6582.77 . AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.03;SOR=0.716 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,263:1.00:263:0,120:0,143:99:6611,787,0:214 chr1 21889635 rs1780316 T C 13163.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.652;DB;DP=534;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=24.74;ReadPosRankSum=0.865;SOR=0.426 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:3,529:0.994:532:2,253:1,276:99:13192,1531,0:422 chr1 21890464 rs1767428 A G 4098.77 . AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.30;SOR=1.348 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,162:1.00:162:0,76:0,86:99:4127,485,0:155 chr1 21896767 rs1256328 C T 3072.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;DB;DP=300;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=3.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=1.754;SOR=0.705 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:146,153:0.512:299:72,72:74,81:99:3101,0,2748:145 chr1 33276424 rs4951787 G A 6969.77 . AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=24.89;SOR=0.693 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,280:1.00:280:0,154:0,126:99:6998,837,0:244 chr1 53153916 . AT A 227.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;DP=79;ExcessHet=3.0103;FS=1.146;LikelihoodRankSum=2.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.280;SOR=0.871 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:44,24:0.353:68:30,11:10,5:99:265,0,816:16 chr1 116931984 rs12134095 A T 1327.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DB;DP=120;ExcessHet=3.0103;FS=0.681;LikelihoodRankSum=0.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.139;SOR=0.822 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:58,62:0.517:120:25,29:33,33:99:1356,0,1166:61 chr1 116932735 rs56016633 T G 297.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;DB;DP=52;ExcessHet=3.0103;FS=1.148;LikelihoodRankSum=-0.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=0.962;SOR=0.510 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:36,16:0.308:52:17,6:19,10:99:326,0,858:16 chr1 116932771 rs41464748 G A 617.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;DB;DP=95;ExcessHet=3.0103;FS=0.811;LikelihoodRankSum=-0.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-0.291;SOR=0.532 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:61,34:0.358:95:30,21:31,13:99:646,0,1375:34 chr1 116932921 rs11540956 G A 3093.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;DB;DP=282;ExcessHet=3.0103;FS=0.909;LikelihoodRankSum=-2.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-0.811;SOR=0.746 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:129,153:0.543:282:72,78:57,75:99:3122,0,2374:139 chr1 116933115 . CT C 78.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;DP=72;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.270;SOR=0.892 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:44,12:0.214:56:15,4:21,5:99:116,0,903:9 chr1 116933372 rs12130872 G A 1903.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;DB;DP=201;ExcessHet=3.0103;FS=0.518;LikelihoodRankSum=-2.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=1.282;SOR=0.635 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:99,100:0.503:199:40,48:59,52:99:1932,0,1933:92 chr1 116940481 . CT C 885.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DP=106;ExcessHet=3.0103;FS=4.829;LikelihoodRankSum=-0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=4.571;SOR=1.408 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:38,64:0.627:102:24,13:14,25:99:923,0,645:38 chr1 116946469 rs12136995 C T 1025.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DB;DP=86;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-0.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=0.630;SOR=0.716 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:35,50:0.588:85:14,33:21,17:99:1054,0,618:50 chr1 116946605 rs12139437 T C 1440.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;DB;DP=136;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-0.044;SOR=0.720 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:62,73:0.541:135:31,34:31,39:99:1469,0,1144:69 chr1 116946635 rs10924083 T C 1129.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;DB;DP=107;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-1.848;SOR=0.762 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:48,58:0.547:106:31,29:17,29:99:1158,0,852:56 chr1 116947084 rs1802716 C T 3539.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;DB;DP=361;ExcessHet=3.0103;FS=3.367;LikelihoodRankSum=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.012;SOR=0.673 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:179,180:0.501:359:102,81:77,99:99:3568,0,3460:162 chr1 156107534 rs4641 C T 6891.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DB;DP=685;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-1.692;SOR=0.692 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:328,354:0.519:682:129,177:199,177:99:6920,0,6243:297 chr1 156785617 rs1800601 G A 3618.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DB;DP=405;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=1.607;SOR=0.705 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:208,195:0.484:403:85,99:123,96:99:3647,0,3988:191 chr1 156838141 rs1800879 T C 7086.77 . AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=24.95;SOR=0.736 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,284:1.00:284:0,154:0,130:99:7115,848,0:235 chr1 156845492 . AGT A,AGTGTGT 4809.73 . AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.313;DP=257;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.001;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.64;ReadPosRankSum=1.233;SOR=0.464 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/2:6,103,65:0.592,0.374:174:3,44,33:2,38,26:99:4847,2452,2830,2496,0,3443:80 chr1 156846233 rs6334 G A 12344.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=4.436;DB;DP=494;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.14;ReadPosRankSum=-0.437;SOR=0.262 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:1,490:0.998:491:1,226:0,264:99:12373,1459,0:419 chr1 156848918 rs6336 C T 3248.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=407;ExcessHet=3.0103;FS=0.521;LikelihoodRankSum=-1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=2.205;SOR=0.718 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:229,177:0.436:406:111,88:118,89:99:3277,0,4659:171 chr1 156848946 rs6339 G T 3647.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;DB;DP=417;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=0.349;SOR=0.705 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:223,194:0.465:417:104,98:119,96:99:3676,0,4483:190 chr1 156848995 rs6337 C T 4614.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;DB;DP=499;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=0.788;SOR=0.686 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:253,246:0.493:499:130,137:123,109:99:4643,0,4866:244 chr1 159163119 rs862990 C T 1666.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839;DB;DP=130;ExcessHet=3.0103;FS=0.670;LikelihoodRankSum=-0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.647;SOR=0.604 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:49,81:0.623:130:21,51:28,30:99:1695,0,930:81 chr1 159169641 rs862999 T C 4022.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;DB;DP=419;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-0.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-1.777;SOR=0.713 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:205,209:0.505:414:123,113:82,96:99:4051,0,3951:183 chr1 161276434 rs6674383 A G 4357.77 . AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.19;SOR=0.728 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,173:1.00:173:0,93:0,80:99:4386,516,0:162 chr1 161276804 . CAA C 189.75 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;DP=29;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.81;ReadPosRankSum=-0.323;SOR=1.085 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:2,10:0.833:12:0,0:2,10:23:227,0,23:10 chr1 193094375 rs4466634 T C 9803.77 . AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.98;QD=25.94;SOR=0.704 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,378:1.00:378:0,187:0,191:99:9832,1133,0:291 chr1 193111228 . TGA T 6019.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.660;DP=395;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=2.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=-0.108;SOR=0.710 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:133,214:0.617:347:52,95:77,90:99:6057,0,3677:161 chr1 193111232 . A . 331.77 . AN=2;DP=380;MQ=60.00 GT:AD:AF:DP:F1R2:F2R1 0/0:380:.:380:152:170 chr1 193181434 rs41302543 C T 1200.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;DB;DP=153;ExcessHet=3.0103;FS=2.037;LikelihoodRankSum=-0.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-1.437;SOR=0.658 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:89,64:0.418:153:46,46:43,18:99:1229,0,2088:64 chr1 193202032 . CA C 105.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;DP=195;ExcessHet=3.0103;FS=0.786;LikelihoodRankSum=1.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-0.566;SOR=0.859 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:167,27:0.139:194:71,6:77,21:99:143,0,3643:27 chr1 202565948 rs504261 G A 3764.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;DB;DP=390;ExcessHet=3.0103;FS=0.365;LikelihoodRankSum=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.535;SOR=0.662 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:192,197:0.506:389:94,93:98,104:99:3793,0,3743:179 chr1 202572105 rs55968420 GCC G 5715.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DB;DP=255;ExcessHet=3.0103;FS=9.095;LikelihoodRankSum=0.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.41;ReadPosRankSum=2.632;SOR=0.418 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:99,156:0.612:255:46,75:53,81:99:5753,0,3354:150 chr1 202574784 rs1968583 G A 2933.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;DB;DP=308;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-2.279;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=9.56;ReadPosRankSum=2.317;SOR=0.680 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:152,155:0.505:307:80,74:72,81:99:2962,0,2885:126 chr1 204921258 rs12141283 A G 10050.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.165;DB;DP=407;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.247;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=24.76;ReadPosRankSum=-1.264;SOR=0.708 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:2,404:0.995:406:0,214:2,181:99:10079,1166,0:340 chr1 204931137 rs16854813 A G 403.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;DB;DP=50;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=-0.136;SOR=0.574 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:27,23:0.460:50:9,10:18,13:99:432,0,587:23 chr1 204943285 rs2595945 A T 3518.77 . AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.68;SOR=0.768 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,137:1.00:137:0,66:0,71:99:3547,411,0:123 chr1 204943947 rs2246662 C A 3536.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;DB;DP=432;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=0.897;SOR=0.714 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:236,194:0.451:430:137,103:99,91:99:3565,0,4716:162 chr1 204943991 rs2246661 C T 2357.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;DB;DP=274;ExcessHet=3.0103;FS=2.639;LikelihoodRankSum=-1.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-0.659;SOR=0.837 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:151,123:0.449:274:83,65:68,58:99:2386,0,2982:110 chr1 204943992 rs2794861 A G 9282.77 . AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.00;SOR=0.761 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,273:1.00:273:0,148:0,125:99:9311,819,0:239 chr1 204945746 rs6668366 G C 1341.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;DB;DP=111;ExcessHet=3.0103;FS=0.733;LikelihoodRankSum=-0.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-2.176;SOR=0.576 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:42,68:0.618:110:18,39:24,29:99:1370,0,789:68 chr1 204945934 rs6657372 A G 4024.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;DB;DP=411;ExcessHet=3.0103;FS=1.101;LikelihoodRankSum=-0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-1.740;SOR=0.820 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:196,213:0.521:409:97,97:99,116:99:4053,0,3760:187 chr1 204946764 rs6663324 T C 1364.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DB;DP=160;ExcessHet=3.0103;FS=0.586;LikelihoodRankSum=-0.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=0.190;SOR=0.608 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:88,72:0.450:160:37,39:51,33:99:1393,0,1755:68 chr1 204948659 rs6667532 A G 3843.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;DB;DP=361;ExcessHet=3.0103;FS=0.381;LikelihoodRankSum=-0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=1.675;SOR=0.680 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:164,197:0.546:361:73,87:91,110:99:3872,0,3062:172 chr1 204948735 rs6667633 A G 1982.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DB;DP=167;ExcessHet=3.0103;FS=0.572;LikelihoodRankSum=0.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-0.638;SOR=0.644 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:70,97:0.581:167:28,49:42,48:99:2011,0,1309:94 chr1 204949645 rs16854859 G A 2381.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;DB;DP=235;ExcessHet=3.0103;FS=0.474;LikelihoodRankSum=-0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-0.747;SOR=0.656 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:113,121:0.517:234:57,71:56,50:99:2410,0,2194:111 chr1 204951184 rs11302888 CT C 4010.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;DB;DP=271;ExcessHet=3.0103;FS=2.049;LikelihoodRankSum=2.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=0.441;SOR=0.601 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:136,129:0.487:265:76,72:60,57:99:4048,0,4277:119 chr1 204954993 rs2278795 A G 1000.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;DB;DP=137;ExcessHet=3.0103;FS=0.637;LikelihoodRankSum=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=0.854;SOR=0.635 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:82,55:0.401:137:52,14:30,41:99:1029,0,1646:53 chr1 204966428 rs2802808 C G 5348.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;DB;DP=611;ExcessHet=3.0103;FS=0.522;LikelihoodRankSum=0.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=1.482;SOR=0.641 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:326,283:0.465:609:132,126:194,157:99:5377,0,6486:257 chr1 205027561 rs9787409 G T 2143.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;DB;DP=191;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-2.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=1.612;SOR=0.695 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:83,108:0.565:191:44,55:39,53:99:2172,0,1511:101 chr1 205027737 rs2275697 G A 2786.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DB;DP=276;ExcessHet=3.0103;FS=0.439;LikelihoodRankSum=-3.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.308;SOR=0.722 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:133,141:0.515:274:60,82:73,59:99:2815,0,2571:131 chr1 205028152 rs57918586 A AC 2648.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;DB;DP=165;ExcessHet=3.0103;FS=1.215;LikelihoodRankSum=-2.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=-0.252;SOR=0.807 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:74,91:0.552:165:32,42:42,49:99:2686,0,2035:91 chr1 205028823 . A AG 5554.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;DP=419;ExcessHet=3.0103;FS=1.617;LikelihoodRankSum=-3.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=0.875;SOR=0.777 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:199,201:0.503:400:87,115:112,86:99:5592,0,5643:192 chr1 205028883 rs35182846 CAG C 3919.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;DB;DP=234;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=3.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.42;ReadPosRankSum=-1.474;SOR=0.686 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:122,103:0.458:225:71,46:51,57:99:3957,0,4812:101 chr1 205028915 rs10793725 C T 1375.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DB;DP=164;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=4.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-1.144;SOR=0.656 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:91,73:0.445:164:48,37:43,36:99:1404,0,1894:73 chr1 205031116 rs2229866 C T 4274.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;DB;DP=472;ExcessHet=3.0103;FS=0.516;LikelihoodRankSum=0.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=0.059;SOR=0.739 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:243,228:0.484:471:151,109:92,119:99:4303,0,4859:202 chr1 205033374 rs2305277 T C 1323.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;DB;DP=120;ExcessHet=3.0103;FS=1.456;LikelihoodRankSum=-0.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-1.955;SOR=0.556 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:52,68:0.567:120:26,43:26,25:99:1352,0,1050:66 chr1 205034434 rs3901740 G T 2624.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DB;DP=261;ExcessHet=3.0103;FS=0.450;LikelihoodRankSum=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=0.092;SOR=0.657 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:125,135:0.519:260:81,68:44,67:99:2653,0,2418:119 chr1 205034488 rs4460698 A G 1270.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DB;DP=120;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=2.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=0.105;SOR=0.685 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:58,62:0.517:120:43,30:15,32:99:1299,0,1155:56 chr1 205034852 rs143128501 A ATGGCCTGCTGCACTGGTCAGGGCCGGTGGTC 2978.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.469;DB;DP=156;ExcessHet=3.0103;FS=14.586;LikelihoodRankSum=-3.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=1.119;SOR=1.521 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:90,65:0.419:155:53,32:37,33:99:3016,0,5404:63 chr1 205038731 rs2305275 C T 2898.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=276;ExcessHet=3.0103;FS=1.431;LikelihoodRankSum=1.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.083;SOR=0.635 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:131,145:0.525:276:59,72:72,73:99:2927,0,2509:141 chr1 205039288 rs12134724 T C 559.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DB;DP=66;ExcessHet=3.0103;FS=3.331;LikelihoodRankSum=-0.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=-1.215;SOR=1.037 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:37,29:0.439:66:16,11:21,18:99:588,0,771:29 chr1 205041015 rs11240349 G A 1309.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;DB;DP=126;ExcessHet=3.0103;FS=0.668;LikelihoodRankSum=1.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=-1.312;SOR=0.587 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:57,68:0.544:125:28,27:29,41:99:1338,0,1061:66 chr1 205041158 rs2229868 C T 2935.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;DB;DP=399;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.864;QD=7.38;ReadPosRankSum=0.801;SOR=0.702 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:229,169:0.425:398:114,76:115,93:99:2964,0,4549:157 chr1 220269426 . CT C 364.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;DP=216;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.907;SOR=0.665 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:171,45:0.208:216:88,13:70,28:99:402,0,3749:41 chr1 220275378 rs2789788 G A 1378.77 . AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.03;SOR=0.900 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,51:1.00:51:0,29:0,22:99:1407,153,0:48 chr1 220284112 rs199649609 GT G 1987.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DB;DP=208;ExcessHet=3.0103;FS=2.532;LikelihoodRankSum=4.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-2.323;SOR=0.528 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:99,108:0.522:207:50,62:31,46:99:2025,0,1862:108 chr1 220298664 rs78770848 A G 1896.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DB;DP=185;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=4.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-1.857;SOR=0.665 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:85,98:0.536:183:44,53:41,45:99:1925,0,1687:90 chr1 220313715 rs141385141 A G 858.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DB;DP=89;ExcessHet=3.0103;FS=0.790;LikelihoodRankSum=-3.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=0.672;SOR=0.793 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:45,43:0.489:88:29,16:16,27:99:887,0,924:39 chr1 220321023 rs11095 A G 1574.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=187;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-0.964;SOR=0.704 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:101,85:0.457:186:47,39:54,46:99:1603,0,1987:77 chr2 26477125 rs147970487 G GACT 5355.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;DB;DP=312;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-3.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.79;ReadPosRankSum=2.279;SOR=0.685 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:161,140:0.465:301:82,68:79,72:99:5393,0,7338:134 chr2 26486166 . TAA T 68.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;DP=32;ExcessHet=3.0103;FS=1.918;LikelihoodRankSum=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.386;SOR=0.293 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:23,6:0.207:29:11,2:6,4:99:106,0,637:6 chr2 32312700 rs7561519 T C 924.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;DB;DP=105;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=1.431;SOR=0.678 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:55,50:0.476:105:29,21:26,29:99:953,0,1165:43 chr2 32312716 rs202142071 C CTATT 492.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;DB;DP=82;ExcessHet=3.0103;FS=0.990;LikelihoodRankSum=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=-0.708;SOR=0.870 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:35,26:0.426:61:17,15:18,11:99:530,0,1353:26 chr2 32369901 rs2365556 T C 461.77 . AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.65;SOR=0.914 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,18:1.00:18:0,14:0,4:54:490,54,0:18 chr2 74588605 rs11555696 G A 2633.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=273;ExcessHet=3.0103;FS=1.450;LikelihoodRankSum=3.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-2.645;SOR=0.741 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:134,137:0.506:271:60,65:74,72:99:2662,0,2574:133 chr2 86478980 rs4832031 T C 259.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DB;DP=31;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-2.460;SOR=0.818 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:16,15:0.484:31:11,10:5,5:99:288,0,319:15 chr2 86479035 rs12988844 A G 992.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;DB;DP=96;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.621;SOR=0.688 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:45,51:0.531:96:34,26:11,25:99:1021,0,839:51 chr2 86479287 rs17438687 G T 480.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DB;DP=43;ExcessHet=3.0103;FS=2.619;LikelihoodRankSum=-1.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-0.404;SOR=0.988 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:19,24:0.558:43:13,6:6,18:99:509,0,361:24 chr2 86481835 rs2276625 C T 2373.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;DB;DP=267;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.632;SOR=0.709 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:142,125:0.468:267:64,56:78,69:99:2402,0,2782:114 chr2 86491245 rs1863056 C T 801.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;DB;DP=99;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-1.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-0.457;SOR=0.682 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:57,42:0.424:99:27,20:30,22:99:830,0,1120:42 chr2 86509267 rs1863058 G A 2478.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DB;DP=244;ExcessHet=3.0103;FS=0.468;LikelihoodRankSum=-1.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=1.005;SOR=0.653 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:113,129:0.533:242:47,63:66,66:99:2507,0,2111:125 chr2 86509388 rs1863059 T G 1915.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DB;DP=226;ExcessHet=3.0103;FS=1.608;LikelihoodRankSum=-0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=1.414;SOR=0.744 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:124,102:0.451:226:63,53:61,49:99:1944,0,2484:100 chr2 99226173 rs1062847 T A 1526.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;DB;DP=159;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-2.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-2.629;SOR=0.670 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:80,79:0.497:159:34,43:46,36:99:1555,0,1657:78 chr2 99232873 rs6711099 T C 1684.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;DB;DP=195;ExcessHet=3.0103;FS=0.524;LikelihoodRankSum=0.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-0.939;SOR=0.644 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:105,90:0.462:195:57,41:48,49:99:1713,0,2120:88 chr2 99234586 . A AT 481.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;DP=83;ExcessHet=3.0103;FS=0.929;LikelihoodRankSum=-2.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=1.578;SOR=0.850 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:48,34:0.415:82:13,23:23,7:99:519,0,766:30 chr2 167060449 rs10180721 A T 4537.77 . AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.93;SOR=0.775 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,175:1.00:175:0,87:0,88:99:4566,524,0:165 chr2 167060980 rs77944059 GAAAC G 9096.73 . AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.73;SOR=0.743 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,205:1.00:205:0,118:0,87:99:9134,618,0:196 chr2 167082978 rs7595255 T C 1531.77 . AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.35;SOR=0.841 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,56:1.00:56:0,15:0,41:99:1560,168,0:54 chr2 167085124 rs10199799 T G 6061.77 . AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.99;QD=26.24;SOR=0.755 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,231:1.00:231:0,118:0,113:99:6090,692,0:223 chr2 167085141 rs58519838 CTT C 11991.73 . AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.99;QD=28.20;SOR=0.769 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,270:1.00:270:0,137:0,133:99:12029,813,0:262 chr2 167090042 rs722204 G A 4171.77 . AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.91;SOR=0.705 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,161:1.00:161:0,71:0,90:99:4200,482,0:141 chr2 167099158 rs6746030 A G 6437.77 . AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.45;SOR=0.733 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,253:1.00:253:0,128:0,125:99:6466,757,0:211 chr2 167129466 rs35476363 C T 704.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;DB;DP=59;ExcessHet=3.0103;FS=0.995;LikelihoodRankSum=-1.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.872;SOR=0.556 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:24,35:0.593:59:11,22:13,13:99:733,0,458:35 chr2 167133929 rs71428907 G T 715.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;DB;DP=69;ExcessHet=3.0103;FS=2.019;LikelihoodRankSum=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.541;SOR=1.038 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:36,33:0.478:69:26,14:10,19:99:744,0,747:31 chr2 167134578 rs10930215 T C 1040.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;DB;DP=114;ExcessHet=3.0103;FS=2.414;LikelihoodRankSum=4.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-1.801;SOR=0.957 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:62,52:0.456:114:24,22:38,30:99:1069,0,1270:52 chr2 167137119 rs6432893 G A 1329.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;DB;DP=148;ExcessHet=3.0103;FS=0.609;LikelihoodRankSum=-2.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.445;SOR=0.602 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:77,71:0.480:148:35,37:42,34:99:1358,0,2949:67 chr2 167137120 rs4525717 C T 1504.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;DB;DP=143;ExcessHet=3.0103;FS=0.616;LikelihoodRankSum=2.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-0.335;SOR=0.770 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:69,74:0.517:143:37,34:32,40:99:1533,0,2707:72 chr2 167138320 . T TA 2202.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;DP=286;ExcessHet=3.0103;FS=0.976;LikelihoodRankSum=-1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.659;SOR=0.623 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:158,112:0.415:270:60,37:84,69:99:2240,0,3382:96 chr2 167138389 rs34570325 C CT 1856.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682;DB;DP=157;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=-0.640;SOR=0.662 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:73,65:0.471:138:36,23:37,42:99:1894,0,2142:65 chr2 167140955 rs7608201 G A 3382.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;DB;DP=321;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=-1.471;SOR=0.693 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:148,173:0.539:321:70,95:78,78:99:3411,0,2788:168 chr2 167143210 rs9917401 C T 1044.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;DB;DP=134;ExcessHet=3.0103;FS=0.655;LikelihoodRankSum=1.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=0.104;SOR=0.791 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:78,54:0.409:132:34,23:44,31:99:1073,0,1771:52 chr2 167144974 rs6747673 A T 1861.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DB;DP=197;ExcessHet=3.0103;FS=0.523;LikelihoodRankSum=-0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=2.121;SOR=0.696 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:98,98:0.500:196:53,45:45,53:99:1890,0,1862:92 chr2 167149693 rs7588632 G A 7178.77 . AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.08;SOR=0.779 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,217:1.00:217:0,114:0,103:99:7207,651,0:200 chr2 167149700 rs41268675 T C 1705.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DB;DP=225;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-0.877;SOR=0.692 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:134,90:0.402:224:65,51:69,39:99:1734,0,2779:88 chr2 167162277 rs4429487 G A 1504.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DB;DP=202;ExcessHet=3.0103;FS=0.523;LikelihoodRankSum=-1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=1.161;SOR=0.741 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:114,84:0.424:198:66,45:48,39:99:1533,0,2264:82 chr2 167163043 rs9646771 T C 2109.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DB;DP=236;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-0.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.996;SOR=0.694 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:121,113:0.483:234:59,49:62,64:99:2138,0,2316:113 chr2 167163199 rs9646772 A T 1067.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;DB;DP=98;ExcessHet=3.0103;FS=1.666;LikelihoodRankSum=-2.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=1.220;SOR=0.482 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:42,55:0.567:97:18,28:24,27:99:1096,0,825:53 chr2 167163372 rs4583483 T C 783.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DB;DP=56;ExcessHet=3.0103;FS=1.027;LikelihoodRankSum=-1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.831;SOR=0.874 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:34,22:0.393:56:17,7:17,15:99:812,0,1623:22 chr2 167163373 rs4443015 C A 783.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;DB;DP=56;ExcessHet=3.0103;FS=1.027;LikelihoodRankSum=-1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.848;SOR=0.874 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:34,22:0.393:56:17,7:17,15:99:812,0,1623:22 chr2 167163663 rs4447616 C T 777.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DB;DP=101;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=0.792;SOR=0.741 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:58,41:0.414:99:28,20:30,21:99:806,0,1189:37 chr2 167168093 rs6432901 C T 2618.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DB;DP=352;ExcessHet=3.0103;FS=0.391;LikelihoodRankSum=-0.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=1.229;SOR=0.728 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:204,146:0.417:350:106,82:98,64:99:2647,0,4083:134 chr2 176983598 . CAAAACCAAAACA C 1581.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DP=163;ExcessHet=3.0103;FS=2.058;LikelihoodRankSum=3.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.565;SOR=0.874 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:67,80:0.544:147:28,40:39,40:99:1619,0,3384:80 chr2 220146609 rs3832110 C CG 2481.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=144;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-0.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=-0.417;SOR=0.642 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:57,80:0.584:137:27,29:30,51:99:2519,0,1682:80 chr2 220147847 rs3821039 G A 984.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DB;DP=111;ExcessHet=3.0103;FS=0.712;LikelihoodRankSum=-0.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.236;SOR=0.637 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:57,53:0.482:110:27,28:30,25:99:1013,0,1098:53 chr2 233344991 rs2741279 T G 8790.77 . AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.63;SOR=0.699 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,343:1.00:343:0,206:0,137:99:8819,1026,0:274 chr2 233345249 rs1190432 C T 7872.77 . AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.56;SOR=0.719 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,308:1.00:308:0,140:0,168:99:7901,919,0:242 chr2 233346381 rs11285283 GC G 2568.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;DB;DP=278;ExcessHet=3.0103;FS=2.199;LikelihoodRankSum=-0.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=2.649;SOR=0.548 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:149,102:0.406:251:71,52:78,50:99:2606,0,4102:102 chr2 233346662 rs909432 A C 4797.77 . AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.39;SOR=0.747 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,189:1.00:189:0,93:0,96:99:4826,566,0:165 chr2 233347919 rs6750085 C G 3253.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;DB;DP=333;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-0.217;SOR=0.680 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:162,169:0.511:331:96,80:66,89:99:3282,0,3055:151 chr2 233348851 rs41265123 C G 4337.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;DB;DP=465;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=2.265;SOR=0.653 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:238,227:0.488:465:115,117:123,110:99:4366,0,4549:203 chr2 233349588 rs1529874 G A 6088.77 . AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.16;SOR=0.744 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,242:1.00:242:0,131:0,111:99:6117,724,0:200 chr2 233350000 rs2573246 C G 4263.77 . AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.38;SOR=0.693 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,168:1.00:168:0,95:0,73:99:4292,503,0:142 chr2 234846198 rs1019103 G A 5344.77 . AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.45;SOR=0.751 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,210:1.00:210:0,100:0,110:99:5373,628,0:168 chr2 234847809 rs138993210 G T 3800.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;DB;DP=376;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-0.989;SOR=0.707 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:176,196:0.527:372:79,103:97,93:99:3829,0,3324:170 chr2 234875433 rs12185625 A G 3139.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;DB;DP=311;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.574;SOR=0.702 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:149,162:0.521:311:78,76:71,86:99:3168,0,2841:136 chr2 234878261 rs6760498 G A 520.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;DB;DP=59;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=1.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=1.030;SOR=0.586 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:31,27:0.466:58:11,21:20,6:99:549,0,636:27 chr2 234890391 rs6708995 G T 1999.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;DB;DP=186;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=0.250;SOR=0.733 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:86,100:0.538:186:47,54:39,46:99:2028,0,1600:94 chr2 234905078 rs11563208 C T 2739.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;DB;DP=344;ExcessHet=3.0103;FS=0.826;LikelihoodRankSum=-1.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=0.753;SOR=0.703 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:187,151:0.447:338:99,70:88,81:99:2768,0,3750:143 chr2 234916771 . AT A 168.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DP=129;ExcessHet=3.0103;FS=1.007;LikelihoodRankSum=0.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.411;SOR=0.823 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:87,24:0.216:111:36,11:34,8:99:206,0,1611:19 chr2 234916831 rs6734618 A G 209.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;DB;DP=43;ExcessHet=3.0103;FS=3.061;LikelihoodRankSum=-0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=0.289;SOR=1.247 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:27,16:0.372:43:14,8:13,8:99:238,0,550:15 chr2 241659368 rs6437368 C A 3773.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DB;DP=385;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=-0.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=1.281;SOR=0.693 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:187,197:0.513:384:89,86:98,111:99:3802,0,3487:169 chr2 241666418 rs2060194 G A 1854.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;DB;DP=233;ExcessHet=3.0103;FS=0.481;LikelihoodRankSum=3.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-0.063;SOR=0.645 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:129,103:0.444:232:56,48:73,55:99:1883,0,2692:96 chr2 241674222 rs3755533 T C 1799.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DB;DP=257;ExcessHet=3.0103;FS=0.470;LikelihoodRankSum=-0.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-0.667;SOR=0.649 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:151,105:0.410:256:67,45:84,54:99:1828,0,3034:91 chr2 241726646 rs2288746 A G 1734.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;DB;DP=172;ExcessHet=3.0103;FS=0.558;LikelihoodRankSum=-0.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-0.778;SOR=0.641 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:79,93:0.541:172:37,50:42,43:99:1763,0,1454:93 chr3 38739574 rs6599241 T C 15275.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.311;DB;DP=606;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.999;MLEAC=2;MLEAF=1.00;MQ=59.96;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-0.274;SOR=0.710 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:2,603:0.997:605:2,316:0,287:99:15304,1762,0:478 chr3 38739845 rs6599242 A G 13871.77 . AC=2;AF=1.00;AN=2;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.97;QD=25.59;SOR=0.715 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 1/1:0,542:1.00:542:0,267:0,275:99:13900,1622,0:419 chr3 38753977 rs6781740 C T 4050.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=398;ExcessHet=3.0103;FS=0.362;LikelihoodRankSum=5.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-0.812;SOR=0.732 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:192,206:0.518:398:85,110:107,96:99:4079,0,3645:168 chr3 38763863 rs6771157 G C 4794.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;DB;DP=513;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=2.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=-1.308;SOR=0.671 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:260,251:0.491:511:131,123:129,128:99:4823,0,5079:226 chr3 38764998 rs12632942 A G 4298.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;DB;DP=512;ExcessHet=3.0103;FS=0.000;LikelihoodRankSum=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-0.930;SOR=0.679 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:278,231:0.454:509:128,118:150,113:99:4327,0,5582:204 chr3 38766675 rs6795970 A G 5339.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;DB;DP=502;ExcessHet=3.0103;FS=0.523;LikelihoodRankSum=-5.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=0.321;SOR=0.697 GT:AD:AF:DP:F1R2:F2R1:GQ:PL:UNIQ_ALT_READ_COUNT 0/1:226,271:0.545:497:110,158:116,113:99:5368,0,4333:225 chr3 38768247 rs59468016 G A 3538.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;DB;DP=418;ExcessHet=3.0103;FS=0.522;Likelih