##fileformat=VCFv4.2 ##FILTER= ##FILTER= ##FILTER= ##FILTER= 200.0 || ReadPosRankSum < -20.0 || SOR > 10.0"> ##FILTER= 60.0 || MQ < 40.0 || MQRankSum < -12.5 || ReadPosRankSum < -8.0 || SOR > 4.0"> ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///home/iona/variant_calling_files/genome_files/genome.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT K06401019-IB-EX-60-2014-FATEME-POUR--ORION-Raw-Data-Ilya-Biotech_S3 1 69270 . A G 505.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-5.515;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=26.06;QD=28.06;SOR=5.892 GT:AD:DP:GQ:PL 1/1:0,18:18:54:519,54,0 1 69511 . A G 4358.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.887;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.17;QD=28.30;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4372,462,0 1 69897 . T C 480.13 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.642;CNN_1D=-0.380;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=26.48;MQRankSum=0.812;QD=24.01;ReadPosRankSum=1.577;SOR=0.324 GT:AD:DP:GQ:PL 1/1:2,18:20:1:488,1,0 1 874778 . GCCTCCCCAGCCACGGTGAGGACCCACCCTGGCATGATCCCCCTCATCA G 394.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.989;CNN_1D=-12.242;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-7.160;SOR=0.691 GT:AD:DP:GQ:PL 0/1:113,69:182:99:402,0,34215 1 877831 . T C 1950.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.890;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.08;SOR=1.308 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1964,216,0 1 881627 . G A 1749.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;CNN_1D=-3.759;DP=148;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=-0.123;SOR=0.489 GT:AD:DP:GQ:PL 0/1:69,79:148:99:1757,0,1667 1 887801 . A G 3487.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.882;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.50;QD=29.55;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3501,354,0 1 888639 . T C 3694.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.798;CNN_1D=1.606;DP=129;ExcessHet=3.0103;FS=3.472;MLEAC=2;MLEAF=1.00;MQ=59.51;MQRankSum=-0.161;QD=28.64;ReadPosRankSum=0.766;SOR=0.583 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3708,349,0 1 888659 . T C 3267.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.634;CNN_1D=1.785;DP=113;ExcessHet=3.0103;FS=3.541;MLEAC=2;MLEAF=1.00;MQ=59.77;MQRankSum=0.000;QD=28.91;ReadPosRankSum=0.046;SOR=0.636 GT:AD:DP:GQ:PL 1/1:1,112:113:99:3281,302,0 1 889158 . G C 4925.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.447;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,109:109:99:4939,331,0 1 889159 . A C 4925.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.500;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.83;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,110:110:99:4939,331,0 1 897325 . G C 2946.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.553;CNN_1D=2.996;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.33;ReadPosRankSum=1.183;SOR=0.247 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2960,272,0 1 900505 . G C 2132.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;CNN_1D=-7.691;DP=210;ExcessHet=3.0103;FS=3.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.379;SOR=0.903 GT:AD:DP:GQ:PL 0/1:116,94:210:99:2140,0,2621 1 906272 . A C 712.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;CNN_1D=-0.309;DP=61;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.203;SOR=1.298 GT:AD:DP:GQ:PL 0/1:33,28:61:99:720,0,848 1 909238 . G C 3291.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.793;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.79;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,86:86:99:3305,267,0 1 909242 . A G 1206.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;CNN_1D=-0.145;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=1.892;SOR=0.617 GT:AD:DP:GQ:PL 0/1:41,50:91:99:1214,0,905 1 909309 . T C 1153.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.760;CNN_1D=-2.234;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.442;SOR=0.661 GT:AD:DP:GQ:PL 0/1:59,48:107:99:1161,0,1274 1 911595 . A G 746.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;CNN_1D=1.226;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=0.913;SOR=0.811 GT:AD:DP:GQ:PL 0/1:28,34:62:99:754,0,571 1 911916 . C T 1222.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;CNN_1D=-2.458;DP=121;ExcessHet=3.0103;FS=3.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.810;SOR=0.535 GT:AD:DP:GQ:PL 0/1:68,53:121:99:1230,0,1566 1 914333 . C G 892.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;CNN_1D=-1.738;DP=80;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-0.559;SOR=0.919 GT:AD:DP:GQ:PL 0/1:41,39:80:99:900,0,915 1 914876 . T C 1977.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.922;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.51;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1991,201,0 1 915227 . A G 4894.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.760;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.85;SOR=1.273 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4908,448,0 1 915264 . G A 2554.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.002;CNN_1D=-6.171;DP=207;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=0.059;SOR=0.602 GT:AD:DP:GQ:PL 0/1:97,110:207:99:2562,0,2364 1 949608 . G A 2603.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.024;CNN_1D=3.392;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.92;ReadPosRankSum=0.034;SOR=0.399 GT:AD:DP:GQ:PL 1/1:3,87:90:99:2617,180,0 1 949654 . A G 1425.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;CNN_1D=-0.826;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=-1.718;SOR=0.693 GT:AD:DP:GQ:PL 0/1:48,58:106:99:1433,0,1100 1 949831 . C T 737.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;CNN_1D=-0.107;DP=75;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.927;SOR=0.824 GT:AD:DP:GQ:PL 0/1:41,34:75:99:745,0,921 1 955597 . G T 90.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;CNN_1D=2.345;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-0.508;SOR=0.446 GT:AD:DP:GQ:PL 0/1:5,4:9:98:98,0,105 1 976554 . C G 475.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;CNN_1D=0.390;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-1.246;SOR=0.884 GT:AD:DP:GQ:PL 0/1:21,21:42:99:483,0,495 1 976598 . C T 607.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;CNN_1D=2.221;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=1.778;SOR=0.675 GT:AD:DP:GQ:PL 0/1:21,27:48:99:615,0,459 1 976764 . C G 465.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;CNN_1D=1.108;DP=54;ExcessHet=3.0103;FS=3.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-0.714;SOR=0.635 GT:AD:DP:GQ:PL 0/1:32,22:54:99:473,0,796 1 977330 . T C 1750.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.764;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.78;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1764,188,0 1 980824 . G C 942.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;CNN_1D=-0.627;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=1.290;SOR=0.746 GT:AD:DP:GQ:PL 0/1:49,42:91:99:950,0,1170 1 981131 . A G 1422.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;CNN_1D=-3.131;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=2.017;SOR=0.754 GT:AD:DP:GQ:PL 0/1:66,66:132:99:1430,0,1476 1 981931 . A G 2049.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;CNN_1D=-4.852;DP=163;ExcessHet=3.0103;FS=3.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=0.488;SOR=0.951 GT:AD:DP:GQ:PL 0/1:83,80:163:99:2057,0,2018 1 982994 . T C 3485.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.902;CNN_1D=2.472;DP=118;ExcessHet=3.0103;FS=3.123;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.79;ReadPosRankSum=-0.429;SOR=0.333 GT:AD:DP:GQ:PL 1/1:1,116:117:99:3499,311,0 1 984302 . T C 1043.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;CNN_1D=-1.657;DP=107;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=1.103;SOR=0.664 GT:AD:DP:GQ:PL 0/1:54,53:107:99:1051,0,1155 1 987200 . C T 5723.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.246;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.65;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5737,578,0 1 990280 . C T 706.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;CNN_1D=-1.717;DP=81;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-2.093;SOR=0.775 GT:AD:DP:GQ:PL 0/1:47,34:81:99:714,0,1037 1 1007203 . A G 1560.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.564;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.00;SOR=1.893 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1574,156,0 1 1007222 . G T 915.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;CNN_1D=0.875;DP=58;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=0.892;SOR=0.395 GT:AD:DP:GQ:PL 0/1:20,38:58:99:923,0,399 1 1021346 . A G 1750.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;CNN_1D=-5.701;DP=167;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=-1.441;SOR=0.635 GT:AD:DP:GQ:PL 0/1:88,79:167:99:1758,0,1969 1 1115415 . C T 781.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;CNN_1D=-1.073;DP=89;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=-1.571;SOR=0.473 GT:AD:DP:GQ:PL 0/1:54,35:89:99:789,0,1435 1 1116231 . T C 623.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;CNN_1D=0.589;DP=59;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-1.990;SOR=0.941 GT:AD:DP:GQ:PL 0/1:31,28:59:99:631,0,711 1 1158631 . A G 2709.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.494;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.52;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2723,285,0 1 1203271 . G A 1554.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;CNN_1D=-2.238;DP=125;ExcessHet=3.0103;FS=6.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=0.195;SOR=0.800 GT:AD:DP:GQ:PL 0/1:57,66:123:99:1562,0,1237 1 1220954 . G A 1823.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;CNN_1D=-1.393;DP=115;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=-0.536;SOR=0.874 GT:AD:DP:GQ:PL 0/1:37,78:115:99:1831,0,632 1 1225641 . C A 601.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.801;CNN_1D=-0.015;DP=53;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-0.775;SOR=1.068 GT:AD:DP:GQ:PL 0/1:25,28:53:99:609,0,647 1 1226757 . G A 1094.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;CNN_1D=0.824;DP=87;ExcessHet=3.0103;FS=4.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=0.608;SOR=0.625 GT:AD:DP:GQ:PL 0/1:42,45:87:99:1102,0,998 1 1226889 . G A 1108.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.911;CNN_1D=-0.782;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-0.178;SOR=0.768 GT:AD:DP:GQ:PL 0/1:47,51:98:99:1116,0,1092 1 1246004 . A G 3515.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.022;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.81;SOR=1.407 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3529,362,0 1 1247494 . T C 1409.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.795;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.35;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1423,144,0 1 1249187 . G A 3142.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.882;CNN_1D=2.697;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.36;ReadPosRankSum=-1.231;SOR=0.290 GT:AD:DP:GQ:PL 1/1:1,106:107:99:3156,280,0 1 1254841 . C G 3210.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.235;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.00;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3224,321,0 1 1262966 . C T 3384.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.932;CNN_1D=0.447;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.74;ReadPosRankSum=-2.249;SOR=0.871 GT:AD:DP:GQ:PL 1/1:2,120:122:99:3398,316,0 1 1263144 . G A 2870.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.606;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.29;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2884,294,0 1 1269554 . T C 3700.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.543;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.84;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3714,372,0 1 1277533 . T C 2278.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.741;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.45;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2292,248,0 1 1361530 . C T 1749.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;CNN_1D=-6.091;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=0.779;SOR=0.668 GT:AD:DP:GQ:PL 0/1:83,86:169:99:1757,0,1722 1 1374834 . A G 285.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;CNN_1D=-0.240;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=-2.883;SOR=0.673 GT:AD:DP:GQ:PL 0/1:24,13:37:99:293,0,547 1 1374961 . C T 332.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.498;CNN_1D=1.551;DP=33;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.036;SOR=1.193 GT:AD:DP:GQ:PL 0/1:19,14:33:99:340,0,404 1 1431165 . C T 431.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.538;CNN_1D=-5.733;DP=86;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-5.196;QD=5.02;ReadPosRankSum=2.262;SOR=0.576 GT:AD:DP:GQ:PL 0/1:59,27:86:99:439,0,1513 1 1479333 . A G 1526.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;CNN_1D=-0.423;DP=102;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=0.343;SOR=0.886 GT:AD:DP:GQ:PL 0/1:36,66:102:99:1534,0,710 1 1551927 . T C 742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;CNN_1D=1.061;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=1.051;SOR=0.641 GT:AD:DP:GQ:PL 0/1:33,32:65:99:750,0,711 1 1558792 . T C 1429.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;CNN_1D=-1.436;DP=110;ExcessHet=3.0103;FS=3.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=0.238;SOR=0.422 GT:AD:DP:GQ:PL 0/1:48,62:110:99:1437,0,949 1 1563789 . C A 1039.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;CNN_1D=-1.253;DP=99;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-0.521;SOR=0.980 GT:AD:DP:GQ:PL 0/1:55,42:97:99:1047,0,1392 1 1564952 . TG T 1462.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288;CNN_1D=-2.621;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-1.921;SOR=0.689 GT:AD:DP:GQ:PL 0/1:51,57:108:99:1470,0,1286 1 1588717 . G A 194.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;CNN_1D=-7.737;DP=88;ExcessHet=3.0103;FS=24.895;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-0.851;QD=2.21;ReadPosRankSum=2.759;SOR=4.606 GT:AD:DP:GQ:PL 0/1:75,13:88:99:202,0,2156 1 1599888 . A G 1683.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.852;CNN_1D=-3.230;DP=152;ExcessHet=3.0103;FS=9.832;MLEAC=1;MLEAF=0.500;MQ=48.14;MQRankSum=3.241;QD=11.08;ReadPosRankSum=5.614;SOR=1.048 GT:AD:DP:GQ:PL 0/1:75,77:152:99:1691,0,1467 1 1647778 . C G 2945.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;CNN_1D=-10.691;DP=271;ExcessHet=3.0103;FS=1.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-1.795;SOR=0.816 GT:AD:DP:GQ:PL 0/1:119,145:264:99:2953,0,2775 1 1647814 . T C 4162.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;CNN_1D=-15.399;DP=373;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.360;SOR=0.689 GT:AD:DP:GQ:PL 0/1:166,200:366:99:4170,0,3337 1 1647871 . T C 4088.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;CNN_1D=-14.742;DP=372;ExcessHet=3.0103;FS=4.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=1.379;SOR=0.500 GT:AD:DP:GQ:PL 0/1:174,194:368:99:4096,0,3749 1 1647893 . C CTTTCTT 5764.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;CNN_1D=-11.493;DP=306;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.00;ReadPosRankSum=-0.083;SOR=0.606 GT:AD:DP:GQ:PL 0/1:116,146:262:99:5772,0,4305 1 1650787 . T C 2982.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;CNN_1D=-0.722;DP=142;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.00;ReadPosRankSum=0.043;SOR=0.589 GT:AD:DP:GQ:PL 0/1:67,75:142:99:2990,0,2572 1 1650797 . A G 3144.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;CNN_1D=-1.392;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.69;ReadPosRankSum=-0.872;SOR=0.718 GT:AD:DP:GQ:PL 0/1:66,79:145:99:3152,0,2567 1 1650801 . T C 3090.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;CNN_1D=-1.684;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.02;ReadPosRankSum=-0.591;SOR=0.718 GT:AD:DP:GQ:PL 0/1:68,79:147:99:3098,0,2698 1 1650807 . T C 1619.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;CNN_1D=-4.368;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.048;SOR=0.670 GT:AD:DP:GQ:PL 0/1:83,72:155:99:1627,0,3212 1 1650832 . A G 1985.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;CNN_1D=-4.473;DP=177;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.195;SOR=0.593 GT:AD:DP:GQ:PL 0/1:90,87:177:99:1993,0,3485 1 1650845 . G A 1899.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;CNN_1D=-5.728;DP=183;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.658;SOR=0.824 GT:AD:DP:GQ:PL 0/1:95,88:183:99:1907,0,3504 1 1653028 . C T 2281.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.321;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.14;QD=27.82;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2295,246,0 1 1666251 . G A 1059.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;CNN_1D=-8.996;DP=123;ExcessHet=3.0103;FS=10.041;MLEAC=1;MLEAF=0.500;MQ=39.90;MQRankSum=-4.356;QD=8.69;ReadPosRankSum=5.380;SOR=0.783 GT:AD:DP:GQ:PL 0/1:71,51:122:99:1067,0,1475 1 1670958 . C G 248.63 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;CNN_1D=-4.669;DP=10;ExcessHet=3.0103;FS=10.000;MLEAC=1;MLEAF=0.500;MQ=28.57;MQRankSum=-1.645;QD=24.86;ReadPosRankSum=-0.674;SOR=4.608 GT:AD:DP:GQ:PL 0/1:1,9:10:12:256,0,12 1 1684347 . C CCCT 3389.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;CNN_1D=0.093;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-0.714;QD=30.52;ReadPosRankSum=0.343;SOR=0.579 GT:AD:DP:GQ:PL 0/1:11,85:96:99:3397,0,166 1 1684472 . C T 2620.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.024;CNN_1D=2.368;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.90;MQRankSum=-0.206;QD=25.69;ReadPosRankSum=2.150;SOR=0.524 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2634,222,0 1 1685832 . C T 2485.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;CNN_1D=-6.854;DP=196;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=-0.493;SOR=0.619 GT:AD:DP:GQ:PL 0/1:87,109:196:99:2493,0,1885 1 1686081 . G A 1403.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;CNN_1D=-2.498;DP=133;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.973;SOR=0.620 GT:AD:DP:GQ:PL 0/1:69,64:133:99:1411,0,1524 1 1696659 . A G 1259.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.919;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.79;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1273,140,0 1 1849529 . A G 3568.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.788;CNN_1D=-0.591;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=0.325;SOR=0.580 GT:AD:DP:GQ:PL 1/1:7,135:142:99:3582,239,0 1 1850627 . CAGCGGCAGG C 1428.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;CNN_1D=1.724;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.89;ReadPosRankSum=1.735;SOR=1.148 GT:AD:DP:GQ:PL 0/1:2,35:37:48:1436,0,48 1 1957037 . T C 1214.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.575;CNN_1D=-0.803;DP=104;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=1.257;SOR=0.963 GT:AD:DP:GQ:PL 0/1:55,49:104:99:1222,0,1244 1 1960674 . C T 1569.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;CNN_1D=-4.212;DP=149;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.171;SOR=0.873 GT:AD:DP:GQ:PL 0/1:76,72:148:99:1577,0,1674 1 1987993 . T C 2429.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.790;CNN_1D=2.490;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.99;ReadPosRankSum=-0.424;SOR=0.341 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2443,232,0 1 2125172 . G A 1222.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;CNN_1D=-1.272;DP=90;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-2.266;SOR=0.602 GT:AD:DP:GQ:PL 0/1:40,50:90:99:1230,0,908 1 2126139 . C G 300.02 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.828;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.27;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,11:11:33:314,33,0 1 2337277 . C T 1188.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;CNN_1D=-3.556;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=0.637;SOR=0.659 GT:AD:DP:GQ:PL 0/1:73,59:132:99:1196,0,1523 1 2340200 . T C 2300.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;CNN_1D=-4.127;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-0.260;SOR=0.710 GT:AD:DP:GQ:PL 0/1:64,102:166:99:2308,0,1389 1 2430617 . C T 2193.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;CNN_1D=-7.707;DP=214;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-0.178;SOR=0.565 GT:AD:DP:GQ:PL 0/1:115,98:213:99:2201,0,2689 1 2444414 . G A 2972.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;CNN_1D=-8.906;DP=253;ExcessHet=3.0103;FS=5.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=0.422;SOR=0.688 GT:AD:DP:GQ:PL 0/1:120,132:252:99:2980,0,2618 1 2452569 . T C 2224.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;CNN_1D=-4.413;DP=164;ExcessHet=3.0103;FS=9.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=0.592;SOR=1.050 GT:AD:DP:GQ:PL 0/1:75,86:161:99:2232,0,1774 1 2528133 . T C 3846.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.956;CNN_1D=0.351;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.08;ReadPosRankSum=0.390;SOR=1.092 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3860,377,0 1 2560882 . G A 6679.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.507;CNN_1D=-1.120;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.48;ReadPosRankSum=1.660;SOR=0.874 GT:AD:DP:GQ:PL 1/1:2,166:168:99:6693,411,0 1 2560903 . T G 6317.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.814;CNN_1D=1.661;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=35.47;ReadPosRankSum=1.512;SOR=1.027 GT:AD:DP:GQ:PL 1/1:2,150:152:99:6331,371,0 1 2573199 . A G 5229.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.208;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.58;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5243,513,0 1 2938265 . C T 905.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;CNN_1D=-0.244;DP=77;ExcessHet=3.0103;FS=3.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-0.599;SOR=1.168 GT:AD:DP:GQ:PL 0/1:42,35:77:99:913,0,1014 1 2938407 . CAGA C 2918.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;CNN_1D=-5.247;DP=176;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=-0.897;SOR=0.623 GT:AD:DP:GQ:PL 0/1:96,78:174:99:2926,0,4434 1 2938697 . T G 1841.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;CNN_1D=-6.751;DP=194;ExcessHet=3.0103;FS=4.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=1.115;SOR=0.518 GT:AD:DP:GQ:PL 0/1:111,83:194:99:1849,0,2810 1 3328358 . T C 4228.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;CNN_1D=-13.545;DP=345;ExcessHet=3.0103;FS=0.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=2.432;SOR=0.660 GT:AD:DP:GQ:PL 0/1:162,181:343:99:4236,0,3560 1 3383898 . A G 3627.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.032;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.48;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3641,396,0 1 3389727 . C T 5267.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.152;CNN_1D=-3.496;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.74;ReadPosRankSum=-0.793;SOR=0.836 GT:AD:DP:GQ:PL 1/1:4,193:197:99:5281,491,0 1 3394456 . T C 3142.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.306;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.36;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3156,320,0 1 3395039 . G A 3631.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.817;CNN_1D=0.927;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.30;ReadPosRankSum=1.581;SOR=0.771 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3645,349,0 1 3416449 . C A 2110.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.300;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.03;SOR=1.542 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2124,204,0 1 3418391 . C T 1278.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;CNN_1D=-3.504;DP=126;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.484;SOR=1.049 GT:AD:DP:GQ:PL 0/1:70,56:126:99:1286,0,1628 1 3421897 . A G 1766.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;CNN_1D=-6.120;DP=170;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-2.145;SOR=0.760 GT:AD:DP:GQ:PL 0/1:90,80:170:99:1774,0,2182 1 3425183 . G A 1665.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;CNN_1D=-2.903;DP=131;ExcessHet=3.0103;FS=2.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=1.342;SOR=0.614 GT:AD:DP:GQ:PL 0/1:61,68:129:99:1673,0,1361 1 3428160 . T G 1024.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;CNN_1D=0.170;DP=87;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=2.633;SOR=0.831 GT:AD:DP:GQ:PL 0/1:43,44:87:99:1032,0,964 1 3496479 . T C 3678.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.713;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.65;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3692,398,0 1 3512008 . G T 1353.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;CNN_1D=-1.194;DP=114;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-0.765;SOR=0.716 GT:AD:DP:GQ:PL 0/1:51,63:114:99:1361,0,1038 1 3548136 . T C 974.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;CNN_1D=-3.613;DP=118;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-0.523;SOR=0.832 GT:AD:DP:GQ:PL 0/1:70,48:118:99:982,0,1707 1 3551792 . G A 1790.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;CNN_1D=-5.951;DP=179;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-0.167;SOR=0.817 GT:AD:DP:GQ:PL 0/1:97,81:178:99:1798,0,2287 1 3638674 . C T 3008.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.252;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.11;SOR=0.830 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3022,320,0 1 3669201 . A G 3263.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;CNN_1D=-2.926;DP=165;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.78;ReadPosRankSum=0.551;SOR=0.623 GT:AD:DP:GQ:PL 0/1:81,84:165:99:3271,0,4110 1 3669205 . C G 3247.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;CNN_1D=-3.171;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.17;ReadPosRankSum=0.487;SOR=0.717 GT:AD:DP:GQ:PL 0/1:78,83:161:99:3255,0,4058 1 3677933 . T C 941.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;CNN_1D=-3.769;DP=128;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=2.223;SOR=1.067 GT:AD:DP:GQ:PL 0/1:80,47:127:99:949,0,1763 1 3679775 . C T 2296.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;CNN_1D=-7.769;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=1.710;SOR=0.673 GT:AD:DP:GQ:PL 0/1:113,107:220:99:2304,0,2598 1 3686415 . C T 1727.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;CNN_1D=-2.697;DP=138;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.781;SOR=0.576 GT:AD:DP:GQ:PL 0/1:62,76:138:99:1735,0,1343 1 3688030 . C G 1397.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;CNN_1D=-5.434;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=1.164;SOR=0.743 GT:AD:DP:GQ:PL 0/1:92,66:158:99:1405,0,2069 1 3701663 . T C 411.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;CNN_1D=1.427;DP=39;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-0.507;SOR=1.112 GT:AD:DP:GQ:PL 0/1:21,18:39:99:419,0,438 1 3731959 . C T 1399.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;CNN_1D=1.746;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.50;ReadPosRankSum=-0.251;SOR=0.627 GT:AD:DP:GQ:PL 0/1:43,37:80:99:1407,0,2179 1 3731965 . G A 1393.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;CNN_1D=1.588;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=1.019;SOR=0.644 GT:AD:DP:GQ:PL 0/1:47,37:84:99:1401,0,2223 1 3747603 . T C 1906.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.616;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.32;SOR=1.437 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1920,195,0 1 3753136 . A T 1053.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;CNN_1D=-3.204;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=-1.079;SOR=0.669 GT:AD:DP:GQ:PL 0/1:64,53:117:99:1061,0,1425 1 3755675 . T C 2886.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.504;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.15;SOR=1.202 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2900,296,0 1 3761479 . C T 1711.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;CNN_1D=-3.299;DP=141;ExcessHet=3.0103;FS=6.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=1.137;SOR=0.724 GT:AD:DP:GQ:PL 0/1:66,75:141:99:1719,0,1424 1 3786189 . G A 3694.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.741;CNN_1D=1.437;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.20;ReadPosRankSum=0.873;SOR=0.420 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3708,360,0 1 3800242 . A G 4503.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.230;CNN_1D=-0.443;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.14;ReadPosRankSum=2.303;SOR=0.709 GT:AD:DP:GQ:PL 1/1:3,157:160:99:4517,396,0 1 3806643 . T A 908.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;CNN_1D=-0.035;DP=92;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.278;SOR=0.430 GT:AD:DP:GQ:PL 0/1:50,42:92:99:916,0,1097 1 3807593 . G C 2367.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.034;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.96;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2381,236,0 1 4772034 . C T 2124.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;CNN_1D=-3.323;DP=148;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-1.992;SOR=0.641 GT:AD:DP:GQ:PL 0/1:86,61:147:99:2132,0,4351 1 4772053 . T C 1873.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;CNN_1D=-2.740;DP=135;ExcessHet=3.0103;FS=2.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=-1.397;SOR=0.648 GT:AD:DP:GQ:PL 0/1:82,52:134:99:1881,0,4314 1 5926507 . T C 1061.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.997;CNN_1D=-2.146;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-0.824;SOR=0.754 GT:AD:DP:GQ:PL 0/1:61,50:111:99:1069,0,1203 1 5935162 . A T 2006.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.628;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.07;SOR=1.131 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2020,207,0 1 6142308 . T C 721.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;CNN_1D=0.778;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-0.217;SOR=0.751 GT:AD:DP:GQ:PL 0/1:45,32:77:99:729,0,1052 1 6158562 . A G 884.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;CNN_1D=0.332;DP=75;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.483;SOR=0.968 GT:AD:DP:GQ:PL 0/1:36,39:75:99:892,0,822 1 6184092 . A G 1265.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;CNN_1D=-3.142;DP=123;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.797;SOR=0.767 GT:AD:DP:GQ:PL 0/1:66,57:123:99:1273,0,1495 1 6184728 . TG T 38.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;CNN_1D=-3.321;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=0.015;SOR=0.036 GT:AD:DP:GQ:PL 0/1:44,7:51:46:46,0,1030 1 6194300 . T C 1026.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.149;CNN_1D=-1.135;DP=97;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=2.125;SOR=0.797 GT:AD:DP:GQ:PL 0/1:54,43:97:99:1034,0,1253 1 6196869 . A G 1943.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;CNN_1D=-5.602;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.309;SOR=0.739 GT:AD:DP:GQ:PL 0/1:82,88:170:99:1951,0,1928 1 6209363 . T C 8381.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.656;CNN_1D=-8.008;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.84;ReadPosRankSum=0.783;SOR=0.497 GT:AD:DP:GQ:PL 1/1:5,296:301:99:8395,768,0 1 6211183 . G A 3233.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.802;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.39;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3247,330,0 1 6257826 . T C 2477.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.912;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.47;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2491,260,0 1 6278414 . A G 876.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;CNN_1D=-1.391;DP=84;ExcessHet=3.0103;FS=8.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.009;SOR=1.329 GT:AD:DP:GQ:PL 0/1:45,39:84:99:884,0,1062 1 6279370 . G C 706.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;CNN_1D=-2.667;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-0.537;SOR=0.706 GT:AD:DP:GQ:PL 0/1:67,38:105:99:714,0,1568 1 6305292 . C A 659.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;CNN_1D=0.752;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.115;SOR=0.779 GT:AD:DP:GQ:PL 0/1:31,27:58:99:667,0,752 1 6305303 . C A 581.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;CNN_1D=0.582;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=0.149;SOR=0.689 GT:AD:DP:GQ:PL 0/1:35,27:62:99:589,0,834 1 6309792 . GGCGAGTCGCGGGCTCCCCGCGGGCCGCTATCCAGGGCCGAGGGCCGCA G 247.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.351;CNN_1D=-0.130;DP=21;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=-0.762;SOR=0.697 GT:AD:DP:GQ:PL 0/1:13,7:20:99:255,0,4839 1 6313938 . C T 724.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.097;CNN_1D=0.719;DP=69;ExcessHet=3.0103;FS=6.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.821;SOR=0.232 GT:AD:DP:GQ:PL 0/1:38,31:69:99:732,0,1036 1 6314822 . T C 1646.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;CNN_1D=-3.989;DP=150;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-1.004;SOR=0.719 GT:AD:DP:GQ:PL 0/1:71,78:149:99:1654,0,1703 1 6545390 . A T 740.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;CNN_1D=0.775;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.149;SOR=0.693 GT:AD:DP:GQ:PL 0/1:26,32:58:99:748,0,553 1 6557009 . A C 1293.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;CNN_1D=-3.296;DP=118;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-1.544;SOR=0.846 GT:AD:DP:GQ:PL 0/1:61,57:118:99:1301,0,1337 1 6586070 . C T 2621.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.831;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.45;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2635,267,0 1 6614391 . A C 3663.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.153;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.52;SOR=0.990 GT:AD:DP:GQ:PL 1/1:0,90:90:99:3677,271,0 1 6614415 . A G 3392.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.411;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=21.48;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,80:80:99:3406,243,0 1 6614535 . G A 2779.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.765;CNN_1D=2.421;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.72;ReadPosRankSum=-2.143;SOR=0.732 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2793,262,0 1 6635231 . A G 5215.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.019;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.80;SOR=0.800 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5229,525,0 1 6635306 . G A 2368.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;CNN_1D=-5.123;DP=181;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=1.261;SOR=0.872 GT:AD:DP:GQ:PL 0/1:80,101:181:99:2376,0,1823 1 6659505 . G A 1278.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;CNN_1D=-3.109;DP=121;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-2.231;SOR=0.896 GT:AD:DP:GQ:PL 0/1:64,57:121:99:1286,0,1448 1 6693097 . A G 941.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;CNN_1D=-0.444;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-1.395;QD=12.90;ReadPosRankSum=0.453;SOR=0.606 GT:AD:DP:GQ:PL 0/1:35,38:73:99:949,0,876 1 6704635 . A G 2714.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.249;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.61;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2728,306,0 1 6705874 . G C 554.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;CNN_1D=1.858;DP=53;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-1.584;SOR=0.509 GT:AD:DP:GQ:PL 0/1:27,26:53:99:562,0,636 1 6705944 . C T 621.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;CNN_1D=-0.772;DP=75;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-0.718;SOR=0.964 GT:AD:DP:GQ:PL 0/1:46,29:75:99:629,0,1095 1 6947717 . C T 1554.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.503;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.32;SOR=0.730 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1568,159,0 1 7723957 . G A 1747.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;CNN_1D=-3.525;DP=154;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.150;SOR=0.487 GT:AD:DP:GQ:PL 0/1:83,71:154:99:1755,0,1950 1 7737799 . A G 760.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.129;CNN_1D=-0.210;DP=73;ExcessHet=3.0103;FS=4.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=0.701;SOR=1.341 GT:AD:DP:GQ:PL 0/1:43,29:72:99:768,0,936 1 7870048 . T C 889.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;CNN_1D=-0.523;DP=85;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-0.374;SOR=0.557 GT:AD:DP:GQ:PL 0/1:41,44:85:99:897,0,922 1 7887493 . T C 2333.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;CNN_1D=-8.597;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.845;SOR=0.681 GT:AD:DP:GQ:PL 0/1:126,105:231:99:2341,0,2941 1 7890064 . A G 5269.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;CNN_1D=-16.085;DP=427;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.264;QD=12.40;ReadPosRankSum=-0.176;SOR=0.671 GT:AD:DP:GQ:PL 0/1:189,236:425:99:5277,0,3985 1 7913430 . G A 1039.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;CNN_1D=-2.802;DP=133;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=2.043;SOR=0.600 GT:AD:DP:GQ:PL 0/1:80,52:132:99:1047,0,1771 1 8390495 . A G 3183.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.551;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.92;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3197,338,0 1 8418644 . C A 2664.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;CNN_1D=-0.956;DP=139;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.31;ReadPosRankSum=-0.677;SOR=0.452 GT:AD:DP:GQ:PL 0/1:70,68:138:99:2672,0,3842 1 8418650 . T C 2617.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.147;CNN_1D=-1.765;DP=136;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.39;ReadPosRankSum=-1.314;SOR=0.538 GT:AD:DP:GQ:PL 0/1:67,68:135:99:2625,0,3744 1 8421203 . T C 2822.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;CNN_1D=-7.690;DP=221;ExcessHet=3.0103;FS=9.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=1.247;SOR=0.904 GT:AD:DP:GQ:PL 0/1:98,121:219:99:2830,0,2101 1 8425900 . T C 1059.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;CNN_1D=-4.594;DP=132;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=0.490;SOR=0.542 GT:AD:DP:GQ:PL 0/1:79,53:132:99:1067,0,1816 1 9009406 . C T 4170.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.910;CNN_1D=-0.238;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.43;ReadPosRankSum=-0.073;SOR=0.864 GT:AD:DP:GQ:PL 1/1:2,150:152:99:4184,382,0 1 9009444 . A C 4036.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.453;CNN_1D=1.235;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.04;ReadPosRankSum=-0.594;SOR=0.368 GT:AD:DP:GQ:PL 1/1:3,136:139:99:4050,330,0 1 9017204 . A G 997.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;CNN_1D=-1.802;DP=100;ExcessHet=3.0103;FS=7.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.210;SOR=0.874 GT:AD:DP:GQ:PL 0/1:50,50:100:99:1005,0,1098 1 9030964 . C T 1450.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;CNN_1D=-3.000;DP=136;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=2.133;SOR=0.614 GT:AD:DP:GQ:PL 0/1:64,70:134:99:1458,0,1377 1 9034421 . G A 1111.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;CNN_1D=-3.168;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=0.497;SOR=0.704 GT:AD:DP:GQ:PL 0/1:75,55:130:99:1119,0,1715 1 9099727 . A G 780.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;CNN_1D=-0.490;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-1.395;SOR=0.801 GT:AD:DP:GQ:PL 0/1:41,34:75:99:788,0,988 1 9165685 . G A 1416.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;CNN_1D=-0.087;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=1.495;SOR=0.713 GT:AD:DP:GQ:PL 0/1:43,60:103:99:1424,0,928 1 9324571 . T C 1974.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;CNN_1D=-4.942;DP=164;ExcessHet=3.0103;FS=1.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=-2.131;SOR=0.522 GT:AD:DP:GQ:PL 0/1:77,86:163:99:1982,0,1719 1 9324670 . A G 1656.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;CNN_1D=-1.636;DP=121;ExcessHet=3.0103;FS=3.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=0.832;SOR=0.767 GT:AD:DP:GQ:PL 0/1:52,68:120:99:1664,0,1344 1 9670834 . C T 2810.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.130;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2824,288,0 1 9784423 . C T 1780.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;CNN_1D=-4.851;DP=142;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-1.850;QD=12.54;ReadPosRankSum=-0.078;SOR=0.795 GT:AD:DP:GQ:PL 0/1:65,77:142:99:1788,0,1365 1 9932101 . C T 1224.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;CNN_1D=-1.642;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=-0.120;SOR=0.700 GT:AD:DP:GQ:PL 0/1:57,51:108:99:1232,0,1247 1 10384896 . C T 1486.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;CNN_1D=-4.097;DP=140;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-1.041;SOR=0.790 GT:AD:DP:GQ:PL 0/1:71,68:139:99:1494,0,1585 1 10511544 . C T 2943.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.075;CNN_1D=1.997;DP=107;ExcessHet=3.0103;FS=3.263;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.76;ReadPosRankSum=-1.063;SOR=0.438 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2957,277,0 1 10511589 . T C 2798.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.695;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.70;SOR=0.930 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2812,306,0 1 10689942 . G T 1994.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;CNN_1D=-7.985;DP=217;ExcessHet=3.0103;FS=2.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-0.097;SOR=0.785 GT:AD:DP:GQ:PL 0/1:123,94:217:99:2002,0,3008 1 10713765 . T C 2823.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.829;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.81;SOR=0.820 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2837,294,0 1 11008102 . G A 1502.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;CNN_1D=-2.774;DP=138;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-0.279;SOR=0.546 GT:AD:DP:GQ:PL 0/1:78,60:138:99:1510,0,1947 1 11008497 . G C 4546.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.428;CNN_1D=0.600;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.14;ReadPosRankSum=0.322;SOR=0.250 GT:AD:DP:GQ:PL 1/1:1,155:156:99:4560,428,0 1 11008594 . A T 1621.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;CNN_1D=0.924;DP=104;ExcessHet=3.0103;FS=6.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=2.149;SOR=0.321 GT:AD:DP:GQ:PL 0/1:40,64:104:99:1629,0,903 1 11008695 . T C 730.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.997;CNN_1D=-0.356;DP=78;ExcessHet=3.0103;FS=4.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=0.835;SOR=1.223 GT:AD:DP:GQ:PL 0/1:45,33:78:99:738,0,1262 1 11009679 . G A 1340.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;CNN_1D=-3.500;DP=128;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-1.410;SOR=0.857 GT:AD:DP:GQ:PL 0/1:70,58:128:99:1348,0,1670 1 11009703 . C T 1449.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;CNN_1D=-4.662;DP=141;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.448;SOR=0.621 GT:AD:DP:GQ:PL 0/1:78,63:141:99:1457,0,1753 1 11014118 . C T 1165.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;CNN_1D=-0.954;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=1.199;SOR=0.748 GT:AD:DP:GQ:PL 0/1:47,55:102:99:1173,0,1065 1 11015165 . A G 1151.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;CNN_1D=-1.201;DP=106;ExcessHet=3.0103;FS=3.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=0.661;SOR=0.544 GT:AD:DP:GQ:PL 0/1:54,52:106:99:1159,0,1227 1 11018765 . G A 1190.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;CNN_1D=-4.143;DP=142;ExcessHet=3.0103;FS=3.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=2.422;SOR=1.009 GT:AD:DP:GQ:PL 0/1:86,56:142:99:1198,0,1987 1 11024271 . G T 1864.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;CNN_1D=-4.231;DP=162;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=-0.201;SOR=0.872 GT:AD:DP:GQ:PL 0/1:78,83:161:99:1872,0,1616 1 11087524 . G A 2898.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.935;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.88;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2912,327,0 1 11090916 . C A 1990.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.692;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.26;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2004,218,0 1 11119899 . T C 979.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.876;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.46;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,37:37:99:993,111,0 1 11132217 . G A 1497.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.855;CNN_1D=4.179;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.72;ReadPosRankSum=1.509;SOR=0.395 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1511,122,0 1 11141187 . C G 3436.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.788;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.49;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3450,374,0 1 11205058 . C T 5550.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.145;CNN_1D=-3.367;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.75;ReadPosRankSum=-2.041;SOR=0.569 GT:AD:DP:GQ:PL 1/1:3,197:200:99:5564,517,0 1 11288758 . G A 5392.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.938;CNN_1D=-2.399;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.94;ReadPosRankSum=0.907;SOR=0.425 GT:AD:DP:GQ:PL 1/1:1,192:193:99:5406,543,0 1 11301714 . A G 2622.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.563;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.76;SOR=0.820 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2636,294,0 1 11561164 . G A 1345.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;CNN_1D=-2.047;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=-1.327;SOR=0.733 GT:AD:DP:GQ:PL 0/1:57,56:113:99:1353,0,1399 1 11561593 . G A 1570.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;CNN_1D=-2.814;DP=132;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=-0.274;SOR=0.826 GT:AD:DP:GQ:PL 0/1:70,62:132:99:1578,0,1799 1 11561937 . C T 826.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;CNN_1D=-0.173;DP=85;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=1.508;SOR=0.822 GT:AD:DP:GQ:PL 0/1:49,36:85:99:834,0,1317 1 11562913 . C T 1532.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;CNN_1D=-3.688;DP=140;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.625;SOR=0.534 GT:AD:DP:GQ:PL 0/1:70,70:140:99:1540,0,1508 1 11579470 . G A 1937.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;CNN_1D=-5.911;DP=184;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=1.549;SOR=0.816 GT:AD:DP:GQ:PL 0/1:97,86:183:99:1945,0,2206 1 11596455 . C T 981.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;CNN_1D=-2.065;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=1.301;SOR=0.699 GT:AD:DP:GQ:PL 0/1:61,41:102:99:989,0,1440 1 11714368 . T G 241.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;CNN_1D=0.720;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-2.254;SOR=0.892 GT:AD:DP:GQ:PL 0/1:12,11:23:99:249,0,313 1 11728952 . C T 1573.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;CNN_1D=-3.686;DP=154;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.950;QD=10.22;ReadPosRankSum=2.151;SOR=0.614 GT:AD:DP:GQ:PL 0/1:82,72:154:99:1581,0,1983 1 11779762 . C T 565.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;CNN_1D=-0.729;DP=70;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=-1.605;SOR=0.931 GT:AD:DP:GQ:PL 0/1:43,27:70:99:573,0,1011 1 11854457 . G A 5557.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.723;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.79;SOR=0.790 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5571,578,0 1 11856378 . G A 1875.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;CNN_1D=-5.641;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-1.780;SOR=0.675 GT:AD:DP:GQ:PL 0/1:96,85:181:99:1883,0,2280 1 11884555 . A G 5768.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.457;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.27;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5782,611,0 1 11918379 . C A 1458.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;CNN_1D=-3.268;DP=144;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=1.016;SOR=0.799 GT:AD:DP:GQ:PL 0/1:77,67:144:99:1466,0,1891 1 12009955 . C T 999.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;CNN_1D=-2.614;DP=105;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-0.569;SOR=0.935 GT:AD:DP:GQ:PL 0/1:59,46:105:99:1007,0,1267 1 12024235 . C T 1129.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;CNN_1D=-1.790;DP=107;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-3.312;SOR=0.660 GT:AD:DP:GQ:PL 0/1:52,55:107:99:1137,0,1050 1 12082926 . A G 2795.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.131;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.95;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2809,300,0 1 12082982 . G A 891.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;CNN_1D=-0.051;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=-0.295;SOR=0.604 GT:AD:DP:GQ:PL 0/1:42,42:84:99:899,0,965 1 12175729 . C T 3838.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.323;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.52;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3852,390,0 1 12339619 . A T 686.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;CNN_1D=-2.042;DP=104;ExcessHet=3.0103;FS=3.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.500;SOR=0.481 GT:AD:DP:GQ:PL 0/1:65,39:104:99:694,0,1624 1 12368705 . G GT 96.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;CNN_1D=-1.255;DP=55;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=0.370;SOR=0.336 GT:AD:DP:GQ:PL 0/1:34,11:45:99:104,0,632 1 12401868 . A C 1688.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;CNN_1D=-3.386;DP=141;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-1.877;SOR=0.804 GT:AD:DP:GQ:PL 0/1:66,74:140:99:1696,0,1418 1 12406664 . T C 806.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;CNN_1D=-0.903;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-0.606;SOR=0.671 GT:AD:DP:GQ:PL 0/1:47,38:85:99:814,0,1030 1 12429611 . C T 1003.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;CNN_1D=0.254;DP=77;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-2.560;SOR=0.919 GT:AD:DP:GQ:PL 0/1:33,44:77:99:1011,0,705 1 12638964 . T C 2237.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.495;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.68;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2251,234,0 1 12776218 . A C 2244.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;CNN_1D=-5.013;DP=174;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=-0.114;SOR=0.904 GT:AD:DP:GQ:PL 0/1:75,99:174:99:2252,0,1711 1 12776344 . A T 1475.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.497;CNN_1D=-2.114;DP=115;ExcessHet=3.0103;FS=3.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-0.988;SOR=1.084 GT:AD:DP:GQ:PL 0/1:59,56:115:99:1483,0,1242 1 12779560 . T C 2508.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;CNN_1D=-4.597;DP=170;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=-0.766;SOR=0.806 GT:AD:DP:GQ:PL 0/1:60,110:170:99:2516,0,1179 1 12779618 . T C 2239.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;CNN_1D=-1.626;DP=145;ExcessHet=3.0103;FS=3.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=1.984;SOR=0.474 GT:AD:DP:GQ:PL 0/1:51,94:145:99:2247,0,1070 1 12785494 . G T 1659.58 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;CNN_1D=-4.166;DP=156;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=0.106;SOR=0.678 GT:AD:DP:GQ:PL 0/1:81,75:156:99:1667,0,1991 1 12820870 . T C 1323.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;CNN_1D=-2.516;DP=120;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-1.356;SOR=0.523 GT:AD:DP:GQ:PL 0/1:65,54:119:99:1331,0,1555 1 12835868 . T C 4380.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.420;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.01;SOR=1.041 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4394,453,0 1 12837463 . C T 2960.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;CNN_1D=-15.968;DP=326;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-4.781;QD=9.08;ReadPosRankSum=-1.115;SOR=0.566 GT:AD:DP:GQ:PL 0/1:192,134:326:99:2968,0,4471 1 12837634 . T A 6243.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-4.091;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.45;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6257,634,0 1 12854090 . T A 1630.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;CNN_1D=-15.709;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.64;MQRankSum=-10.241;QD=7.58;ReadPosRankSum=0.298;SOR=0.717 GT:AD:DP:GQ:PL 0/1:164,51:215:99:1638,0,6920 1 12854097 . T C 1562.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;CNN_1D=-15.945;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.24;MQRankSum=-10.609;QD=6.82;ReadPosRankSum=1.089;SOR=0.714 GT:AD:DP:GQ:PL 0/1:179,50:229:99:1570,0,7463 1 12854105 . A G 1496.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;CNN_1D=-15.974;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-10.604;QD=6.45;ReadPosRankSum=1.106;SOR=0.728 GT:AD:DP:GQ:PL 0/1:183,49:232:99:1504,0,7441 1 12854162 . C T 421.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.227;CNN_1D=-16.106;DP=239;ExcessHet=3.0103;FS=3.257;MLEAC=1;MLEAF=0.500;MQ=54.36;MQRankSum=-11.217;QD=1.76;ReadPosRankSum=-2.464;SOR=1.029 GT:AD:DP:GQ:PL 0/1:202,37:239:99:429,0,5131 1 12854188 . T C 1257.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=2.540;CNN_1D=-16.118;DP=256;ExcessHet=3.0103;FS=11.750;MLEAC=1;MLEAF=0.500;MQ=50.83;MQRankSum=-12.486;QD=4.91;ReadPosRankSum=-6.228;SOR=1.346 GT:AD:DP:GQ:PL 0/1:186,70:256:99:1265,0,4907 1 12854272 . T C 2461.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;CNN_1D=-16.118;DP=312;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=47.06;MQRankSum=-13.872;QD=7.92;ReadPosRankSum=2.566;SOR=0.788 GT:AD:DP:GQ:PL 0/1:185,126:311:99:2469,0,4457 1 12854356 . T C 1813.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;CNN_1D=-16.118;DP=285;ExcessHet=3.0103;FS=4.237;MLEAC=1;MLEAF=0.500;MQ=50.75;MQRankSum=-14.559;QD=6.39;ReadPosRankSum=2.526;SOR=0.960 GT:AD:DP:GQ:PL 0/1:189,95:284:99:1821,0,4731 1 12854414 . G A 2032.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.873;CNN_1D=-16.118;DP=301;ExcessHet=3.0103;FS=5.545;MLEAC=1;MLEAF=0.500;MQ=53.76;MQRankSum=-14.238;QD=6.78;ReadPosRankSum=-1.759;SOR=0.997 GT:AD:DP:GQ:PL 0/1:192,108:300:99:2040,0,4924 1 12854474 . A C 2461.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304;CNN_1D=-16.111;DP=276;ExcessHet=3.0103;FS=5.561;MLEAC=1;MLEAF=0.500;MQ=56.07;MQRankSum=-12.744;QD=8.92;ReadPosRankSum=1.434;SOR=0.853 GT:AD:DP:GQ:PL 0/1:202,74:276:99:2469,0,8307 1 12854479 . C G 2439.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;CNN_1D=-16.109;DP=280;ExcessHet=3.0103;FS=5.534;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-12.856;QD=8.71;ReadPosRankSum=0.664;SOR=0.965 GT:AD:DP:GQ:PL 0/1:206,74:280:99:2447,0,8310 1 12854530 . C G 7389.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.365;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.19;QD=29.56;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7403,750,0 1 12855835 . C G 7967.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.822;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.36;QD=30.42;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,186:186:99:7981,566,0 1 12855845 . G C 7984.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.869;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.57;QD=28.14;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,178:178:99:7998,563,0 1 12855884 . C T 191.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;CNN_1D=-16.115;DP=203;ExcessHet=3.0103;FS=52.784;MLEAC=1;MLEAF=0.500;MQ=46.51;MQRankSum=-4.752;QD=0.94;ReadPosRankSum=-1.404;SOR=5.891 GT:AD:DP:GQ:PL 0/1:185,18:203:99:199,0,7580 1 12855891 . A AGGGG 472.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.035;CNN_1D=-16.113;DP=200;ExcessHet=3.0103;FS=50.713;MLEAC=1;MLEAF=0.500;MQ=45.56;MQRankSum=-4.512;QD=2.36;ReadPosRankSum=-0.561;SOR=5.929 GT:AD:DP:GQ:PL 0/1:181,19:200:99:480,0,7664 1 12855892 . TTGAC T 478.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.820;CNN_1D=-16.113;DP=209;ExcessHet=3.0103;FS=51.754;MLEAC=1;MLEAF=0.500;MQ=45.46;MQRankSum=-4.405;QD=2.29;ReadPosRankSum=-2.288;SOR=4.930 GT:AD:DP:GQ:PL 0/1:184,25:209:99:486,0,7651 1 12856010 . C G 4841.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-3.154;CNN_1D=-16.118;DP=517;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=45.36;MQRankSum=0.850;QD=9.36;ReadPosRankSum=0.009;SOR=0.844 GT:AD:DP:GQ:PL 0/1:275,242:517:99:4849,0,6147 1 12856030 . T C 667.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;CNN_1D=-16.118;DP=553;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=45.54;MQRankSum=-1.226;QD=1.21;ReadPosRankSum=-0.550;SOR=0.755 GT:AD:DP:GQ:PL 0/1:461,92:553:99:675,0,10624 1 12856111 . C T 4357.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;CNN_1D=-16.105;DP=389;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=45.61;MQRankSum=-0.787;QD=11.20;ReadPosRankSum=0.064;SOR=0.611 GT:AD:DP:GQ:PL 0/1:189,200:389:99:4365,0,4054 1 12856153 . G A 1932.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;CNN_1D=-9.533;DP=179;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.500;MQ=45.00;MQRankSum=-0.475;QD=10.80;ReadPosRankSum=-3.355;SOR=0.999 GT:AD:DP:GQ:PL 0/1:99,80:179:99:1940,0,2499 1 12885127 . G A 94.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.301;CNN_1D=-16.117;DP=198;ExcessHet=3.0103;FS=87.803;MLEAC=1;MLEAF=0.500;MQ=38.29;MQRankSum=-4.448;QD=0.48;ReadPosRankSum=-1.374;SOR=6.592 GT:AD:DP:GQ:PL 0/1:172,26:198:99:102,0,4527 1 12887174 . C T 481.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.976;CNN_1D=-16.118;DP=235;ExcessHet=3.0103;FS=140.570;MLEAC=1;MLEAF=0.500;MQ=39.21;MQRankSum=-5.894;QD=2.05;ReadPosRankSum=0.908;SOR=7.275 GT:AD:DP:GQ:PL 0/1:198,37:235:99:489,0,5481 1 12887549 . T C 8278.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.084;CNN_1D=-9.191;DP=292;ExcessHet=3.0103;FS=3.070;MLEAC=2;MLEAF=1.00;MQ=52.90;MQRankSum=-1.113;QD=28.35;ReadPosRankSum=0.848;SOR=0.278 GT:AD:DP:GQ:PL 1/1:1,291:292:99:8292,838,0 1 12888389 . A C 1200.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.584;CNN_1D=-1.580;DP=80;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=37.40;MQRankSum=1.286;QD=15.01;ReadPosRankSum=0.742;SOR=0.311 GT:AD:DP:GQ:PL 0/1:42,38:80:99:1208,0,1317 1 12888397 . C T 135.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;CNN_1D=-7.605;DP=85;ExcessHet=3.0103;FS=4.647;MLEAC=1;MLEAF=0.500;MQ=37.31;MQRankSum=0.228;QD=1.60;ReadPosRankSum=-0.400;SOR=1.755 GT:AD:DP:GQ:PL 0/1:76,9:85:99:143,0,3897 1 12888415 . C T 102.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;CNN_1D=-10.532;DP=110;ExcessHet=3.0103;FS=12.067;MLEAC=1;MLEAF=0.500;MQ=38.10;MQRankSum=-0.140;QD=0.93;ReadPosRankSum=-0.031;SOR=3.001 GT:AD:DP:GQ:PL 0/1:100,10:110:99:110,0,4443 1 12907282 . G C 11624.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;CNN_1D=-16.118;DP=480;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=53.60;MQRankSum=-14.199;QD=24.22;ReadPosRankSum=3.237;SOR=0.739 GT:AD:DP:GQ:PL 0/1:190,290:480:99:11632,0,12249 1 12907284 . T C 11655.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;CNN_1D=-16.118;DP=486;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=53.65;MQRankSum=-14.406;QD=23.98;ReadPosRankSum=3.366;SOR=0.766 GT:AD:DP:GQ:PL 0/1:195,291:486:99:11663,0,12340 1 12907285 . G C 11655.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.814;CNN_1D=-16.118;DP=492;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=53.65;MQRankSum=-14.596;QD=23.69;ReadPosRankSum=3.431;SOR=0.755 GT:AD:DP:GQ:PL 0/1:199,293:492:99:11663,0,12340 1 12907316 . T C 7085.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;CNN_1D=-16.118;DP=560;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=-17.393;QD=12.65;ReadPosRankSum=-0.100;SOR=0.621 GT:AD:DP:GQ:PL 0/1:240,320:560:99:7093,0,5077 1 12907350 . C T 9475.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;CNN_1D=-16.118;DP=513;ExcessHet=3.0103;FS=6.902;MLEAC=1;MLEAF=0.500;MQ=53.58;MQRankSum=-17.871;QD=18.47;ReadPosRankSum=-1.366;SOR=0.895 GT:AD:DP:GQ:PL 0/1:265,248:513:99:9483,0,10340 1 12907351 . A G 9475.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;CNN_1D=-16.118;DP=509;ExcessHet=3.0103;FS=6.942;MLEAC=1;MLEAF=0.500;MQ=53.54;MQRankSum=-17.777;QD=18.62;ReadPosRankSum=-1.580;SOR=0.875 GT:AD:DP:GQ:PL 0/1:263,246:509:99:9483,0,10340 1 12907370 . A T 6987.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.424;CNN_1D=-16.118;DP=476;ExcessHet=3.0103;FS=9.532;MLEAC=1;MLEAF=0.500;MQ=53.27;MQRankSum=-18.610;QD=14.71;ReadPosRankSum=1.046;SOR=1.004 GT:AD:DP:GQ:PL 0/1:284,191:475:99:6995,0,11289 1 12907379 . T C 6951.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.772;CNN_1D=-16.118;DP=478;ExcessHet=3.0103;FS=9.620;MLEAC=1;MLEAF=0.500;MQ=52.32;MQRankSum=-17.953;QD=14.54;ReadPosRankSum=1.130;SOR=0.997 GT:AD:DP:GQ:PL 0/1:292,186:478:99:6959,0,6913 1 12907380 . C A 7012.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;CNN_1D=-16.118;DP=477;ExcessHet=3.0103;FS=9.678;MLEAC=1;MLEAF=0.500;MQ=52.30;MQRankSum=-18.236;QD=14.70;ReadPosRankSum=1.329;SOR=1.003 GT:AD:DP:GQ:PL 0/1:296,181:477:99:7020,0,11912 1 12907385 . G A 6971.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;CNN_1D=-16.118;DP=473;ExcessHet=3.0103;FS=8.391;MLEAC=1;MLEAF=0.500;MQ=51.83;MQRankSum=-18.243;QD=14.74;ReadPosRankSum=-0.203;SOR=0.971 GT:AD:DP:GQ:PL 0/1:290,183:473:99:6979,0,11512 1 12907400 . G A 4752.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.987;CNN_1D=-16.118;DP=438;ExcessHet=3.0103;FS=10.042;MLEAC=1;MLEAF=0.500;MQ=51.25;MQRankSum=-17.555;QD=10.85;ReadPosRankSum=2.312;SOR=1.134 GT:AD:DP:GQ:PL 0/1:294,144:438:99:4760,0,11623 1 12907408 . T A 4640.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.697;CNN_1D=-16.118;DP=418;ExcessHet=3.0103;FS=13.337;MLEAC=1;MLEAF=0.500;MQ=51.01;MQRankSum=-17.173;QD=11.10;ReadPosRankSum=2.649;SOR=1.287 GT:AD:DP:GQ:PL 0/1:286,132:418:99:4648,0,11454 1 12907438 . A G 5449.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.577;CNN_1D=-16.118;DP=423;ExcessHet=3.0103;FS=17.638;MLEAC=1;MLEAF=0.500;MQ=48.50;MQRankSum=-16.230;QD=12.88;ReadPosRankSum=-1.392;SOR=1.561 GT:AD:DP:GQ:PL 0/1:274,149:423:99:5457,0,10813 1 12907446 . C T 5530.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;CNN_1D=-16.118;DP=413;ExcessHet=3.0103;FS=17.801;MLEAC=1;MLEAF=0.500;MQ=47.65;MQRankSum=-15.399;QD=13.39;ReadPosRankSum=-2.039;SOR=1.614 GT:AD:DP:GQ:PL 0/1:264,149:413:99:5538,0,10837 1 12907450 . T C 5541.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;CNN_1D=-16.118;DP=405;ExcessHet=3.0103;FS=19.435;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-15.114;QD=13.68;ReadPosRankSum=-2.110;SOR=1.675 GT:AD:DP:GQ:PL 0/1:258,147:405:99:5549,0,10589 1 12907457 . A G 5406.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.643;CNN_1D=-16.118;DP=386;ExcessHet=3.0103;FS=41.175;MLEAC=1;MLEAF=0.500;MQ=46.71;MQRankSum=-14.441;QD=14.01;ReadPosRankSum=-2.117;SOR=1.784 GT:AD:DP:GQ:PL 0/1:245,141:386:99:5414,0,10139 1 12907458 . T A 5376.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;CNN_1D=-16.118;DP=382;ExcessHet=3.0103;FS=41.935;MLEAC=1;MLEAF=0.500;MQ=46.90;MQRankSum=-14.245;QD=14.07;ReadPosRankSum=-1.571;SOR=1.829 GT:AD:DP:GQ:PL 0/1:245,137:382:99:5384,0,9974 1 12907465 . A G 4671.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.738;CNN_1D=-16.118;DP=373;ExcessHet=3.0103;FS=43.935;MLEAC=1;MLEAF=0.500;MQ=46.97;MQRankSum=-13.184;QD=12.52;ReadPosRankSum=0.888;SOR=1.899 GT:AD:DP:GQ:PL 0/1:249,124:373:99:4679,0,10403 1 12907469 . C G 4424.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;CNN_1D=-16.118;DP=368;ExcessHet=3.0103;FS=44.899;MLEAC=1;MLEAF=0.500;MQ=47.19;MQRankSum=-12.986;QD=12.02;ReadPosRankSum=1.682;SOR=1.958 GT:AD:DP:GQ:PL 0/1:248,120:368:99:4432,0,10121 1 12907483 . T A 2914.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;CNN_1D=-16.118;DP=357;ExcessHet=3.0103;FS=50.128;MLEAC=1;MLEAF=0.500;MQ=47.29;MQRankSum=-12.603;QD=8.19;ReadPosRankSum=4.075;SOR=2.122 GT:AD:DP:GQ:PL 0/1:246,110:356:99:2922,0,6558 1 12907495 . T C 3678.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;CNN_1D=-16.118;DP=351;ExcessHet=3.0103;FS=42.148;MLEAC=1;MLEAF=0.500;MQ=47.44;MQRankSum=-12.222;QD=10.48;ReadPosRankSum=5.113;SOR=2.018 GT:AD:DP:GQ:PL 0/1:246,105:351:99:3686,0,10103 1 12907498 . C T 3637.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;CNN_1D=-16.118;DP=353;ExcessHet=3.0103;FS=38.216;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-12.237;QD=10.30;ReadPosRankSum=5.178;SOR=2.002 GT:AD:DP:GQ:PL 0/1:249,104:353:99:3645,0,10295 1 12907507 . C T 3537.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;CNN_1D=-16.118;DP=349;ExcessHet=3.0103;FS=34.562;MLEAC=1;MLEAF=0.500;MQ=47.63;MQRankSum=-12.168;QD=10.14;ReadPosRankSum=4.763;SOR=1.917 GT:AD:DP:GQ:PL 0/1:247,102:349:99:3545,0,10565 1 12907508 . T C 3495.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;CNN_1D=-16.118;DP=352;ExcessHet=3.0103;FS=34.545;MLEAC=1;MLEAF=0.500;MQ=47.75;MQRankSum=-12.228;QD=9.93;ReadPosRankSum=4.774;SOR=1.931 GT:AD:DP:GQ:PL 0/1:250,102:352:99:3503,0,10568 1 12907513 . T C 3501.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;CNN_1D=-16.118;DP=351;ExcessHet=3.0103;FS=32.685;MLEAC=1;MLEAF=0.500;MQ=47.85;MQRankSum=-12.222;QD=9.98;ReadPosRankSum=3.951;SOR=1.890 GT:AD:DP:GQ:PL 0/1:249,102:351:99:3509,0,10484 1 12907518 . T A 3440.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.988;CNN_1D=-16.118;DP=348;ExcessHet=3.0103;FS=27.648;MLEAC=1;MLEAF=0.500;MQ=47.99;MQRankSum=-12.104;QD=9.89;ReadPosRankSum=3.608;SOR=1.767 GT:AD:DP:GQ:PL 0/1:249,99:348:99:3448,0,10301 1 12907519 . C A 3401.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;CNN_1D=-16.118;DP=351;ExcessHet=3.0103;FS=27.564;MLEAC=1;MLEAF=0.500;MQ=48.10;MQRankSum=-12.164;QD=9.69;ReadPosRankSum=3.553;SOR=1.755 GT:AD:DP:GQ:PL 0/1:252,99:351:99:3409,0,10262 1 12907777 . T C 4257.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.379;CNN_1D=-16.118;DP=384;ExcessHet=3.0103;FS=60.805;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-16.336;QD=11.09;ReadPosRankSum=-2.612;SOR=2.206 GT:AD:DP:GQ:PL 0/1:266,118:384:99:4265,0,10707 1 12907781 . T C 4845.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.207;CNN_1D=-16.118;DP=389;ExcessHet=3.0103;FS=58.417;MLEAC=1;MLEAF=0.500;MQ=56.24;MQRankSum=-15.886;QD=12.46;ReadPosRankSum=-2.393;SOR=2.103 GT:AD:DP:GQ:PL 0/1:261,128:389:99:4853,0,10829 1 12907798 . A C 7083.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.371;CNN_1D=-16.118;DP=429;ExcessHet=3.0103;FS=24.185;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-13.378;QD=16.51;ReadPosRankSum=-1.543;SOR=1.667 GT:AD:DP:GQ:PL 0/1:250,179:429:99:7091,0,10061 1 12907802 . C T 7335.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;CNN_1D=-16.118;DP=440;ExcessHet=3.0103;FS=24.293;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=-12.759;QD=16.67;ReadPosRankSum=-1.327;SOR=1.714 GT:AD:DP:GQ:PL 0/1:248,192:440:99:7343,0,10247 1 12907803 . C T 7338.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;CNN_1D=-16.118;DP=445;ExcessHet=3.0103;FS=24.293;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-13.020;QD=16.49;ReadPosRankSum=-0.858;SOR=1.702 GT:AD:DP:GQ:PL 0/1:251,194:445:99:7346,0,10205 1 12907829 . T C 1550.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;CNN_1D=-16.118;DP=591;ExcessHet=3.0103;FS=3.262;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=6.357;QD=2.63;ReadPosRankSum=-0.132;SOR=0.424 GT:AD:DP:GQ:PL 0/1:473,117:590:99:1558,0,17379 1 12907837 . C T 8012.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;CNN_1D=-16.118;DP=619;ExcessHet=3.0103;FS=10.766;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-9.966;QD=12.97;ReadPosRankSum=3.466;SOR=1.227 GT:AD:DP:GQ:PL 0/1:268,350:618:99:8020,0,7632 1 12907885 . T C 4667.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=2.491;CNN_1D=-16.118;DP=707;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=6.533;QD=6.61;ReadPosRankSum=-0.847;SOR=0.480 GT:AD:DP:GQ:PL 0/1:471,235:706:99:4675,0,11084 1 12919081 . C T 2149.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149;CNN_1D=-3.497;DP=167;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=1.135;QD=13.03;ReadPosRankSum=-0.146;SOR=0.902 GT:AD:DP:GQ:PL 0/1:73,92:165:99:2157,0,1766 1 12919587 . T C 2401.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;CNN_1D=-8.441;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-2.061;QD=12.44;ReadPosRankSum=-0.699;SOR=0.657 GT:AD:DP:GQ:PL 0/1:94,99:193:99:2409,0,1984 1 12919983 . G A 1323.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;CNN_1D=-3.377;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=2.843;SOR=0.728 GT:AD:DP:GQ:PL 0/1:78,57:135:99:1331,0,1984 1 12921127 . A G 2073.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;CNN_1D=-7.746;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.357;SOR=0.730 GT:AD:DP:GQ:PL 0/1:120,92:212:99:2081,0,2727 1 12921332 . T C 4850.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.120;CNN_1D=-11.804;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-5.286;QD=19.10;ReadPosRankSum=-0.213;SOR=0.663 GT:AD:DP:GQ:PL 0/1:128,126:254:99:4858,0,6463 1 12921333 . G A 4850.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;CNN_1D=-11.409;DP=256;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-4.767;QD=19.02;ReadPosRankSum=-0.064;SOR=0.648 GT:AD:DP:GQ:PL 0/1:129,126:255:99:4858,0,6463 1 12921519 . T C 260.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.833;CNN_1D=-15.946;DP=141;ExcessHet=3.0103;FS=39.992;MLEAC=1;MLEAF=0.500;MQ=44.95;MQRankSum=-6.289;QD=1.85;ReadPosRankSum=-1.952;SOR=4.509 GT:AD:DP:GQ:PL 0/1:119,22:141:99:268,0,2942 1 12921539 . T G 92.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.395;CNN_1D=-15.855;DP=146;ExcessHet=3.0103;FS=37.218;MLEAC=1;MLEAF=0.500;MQ=45.56;MQRankSum=-6.192;QD=0.63;ReadPosRankSum=-0.605;SOR=5.367 GT:AD:DP:GQ:PL 0/1:130,16:146:99:100,0,3075 1 12921600 . C T 159.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;CNN_1D=-9.955;DP=105;ExcessHet=3.0103;FS=12.089;MLEAC=1;MLEAF=0.500;MQ=44.35;MQRankSum=-1.986;QD=1.52;ReadPosRankSum=-1.379;SOR=1.207 GT:AD:DP:GQ:PL 0/1:88,17:105:99:167,0,2173 1 12921642 . G A 352.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;CNN_1D=-4.702;DP=78;ExcessHet=3.0103;FS=10.800;MLEAC=1;MLEAF=0.500;MQ=43.54;MQRankSum=-0.036;QD=4.52;ReadPosRankSum=2.077;SOR=0.648 GT:AD:DP:GQ:PL 0/1:55,23:78:99:360,0,1461 1 12939546 . C CG 3648.64 CNN_1D_INDEL_Tranche_99.40_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;CNN_1D=-16.118;DP=371;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=53.19;MQRankSum=-6.994;QD=10.39;ReadPosRankSum=0.296;SOR=0.634 GT:AD:DP:GQ:PL 0/1:196,155:351:99:3656,0,5012 1 12939568 . C G 3538.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.214;CNN_1D=-16.117;DP=348;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=54.19;MQRankSum=-9.154;QD=10.17;ReadPosRankSum=-0.406;SOR=0.679 GT:AD:DP:GQ:PL 0/1:190,158:348:99:3546,0,4249 1 12939655 . T G 4039.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;CNN_1D=-16.118;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.97;MQRankSum=-6.800;QD=10.72;ReadPosRankSum=0.507;SOR=0.690 GT:AD:DP:GQ:PL 0/1:196,181:377:99:4047,0,4519 1 12939904 . A C 213.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.716;CNN_1D=-13.355;DP=121;ExcessHet=3.0103;FS=31.066;MLEAC=1;MLEAF=0.500;MQ=39.99;MQRankSum=-5.270;QD=1.77;ReadPosRankSum=-1.140;SOR=2.358 GT:AD:DP:GQ:PL 0/1:102,19:121:99:221,0,2338 1 12939930 . G T 86.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;CNN_1D=-11.489;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.06;MQRankSum=-4.125;QD=0.79;ReadPosRankSum=-1.747;SOR=0.569 GT:AD:DP:GQ:PL 0/1:94,15:109:94:94,0,2481 1 12941742 . G A 2174.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;CNN_1D=-10.751;DP=221;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=51.36;MQRankSum=-2.514;QD=9.84;ReadPosRankSum=0.509;SOR=0.814 GT:AD:DP:GQ:PL 0/1:128,93:221:99:2182,0,2997 1 12942138 . C G 449.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.685;CNN_1D=-16.028;DP=210;ExcessHet=3.0103;FS=12.328;MLEAC=1;MLEAF=0.500;MQ=49.57;MQRankSum=-9.130;QD=2.14;ReadPosRankSum=-0.390;SOR=1.510 GT:AD:DP:GQ:PL 0/1:177,33:210:99:457,0,4429 1 12942179 . T C 82.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.427;CNN_1D=-16.117;DP=217;ExcessHet=3.0103;FS=61.359;MLEAC=1;MLEAF=0.500;MQ=45.50;MQRankSum=-5.134;QD=0.38;ReadPosRankSum=-3.040;SOR=5.993 GT:AD:DP:GQ:PL 0/1:198,19:217:90:90,0,4877 1 12943038 . A C 1880.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.901;CNN_1D=-15.988;DP=261;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.500;MQ=49.09;MQRankSum=-7.321;QD=7.21;ReadPosRankSum=-0.723;SOR=0.729 GT:AD:DP:GQ:PL 0/1:175,86:261:99:1888,0,3963 1 13001186 . C T 1103.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.022;CNN_1D=-6.717;DP=41;ExcessHet=3.0103;FS=11.357;MLEAC=2;MLEAF=1.00;MQ=29.61;MQRankSum=-0.447;QD=26.90;ReadPosRankSum=-2.230;SOR=6.518 GT:AD:DP:GQ:PL 1/1:3,38:41:44:1117,44,0 1 13001252 . T C 2645.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;CNN_1D=-5.454;DP=108;ExcessHet=3.0103;FS=3.871;MLEAC=2;MLEAF=1.00;MQ=32.22;MQRankSum=-2.711;QD=24.49;ReadPosRankSum=1.140;SOR=1.586 GT:AD:DP:GQ:PL 1/1:6,102:108:99:2659,165,0 1 13001312 . C G 2664.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;CNN_1D=-11.198;DP=230;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.500;MQ=37.96;MQRankSum=0.528;QD=11.59;ReadPosRankSum=-1.012;SOR=0.514 GT:AD:DP:GQ:PL 0/1:96,134:230:99:2672,0,1781 1 13183109 . T C 117.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.164;CNN_1D=-16.111;DP=216;ExcessHet=3.0103;FS=20.745;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-9.816;QD=0.55;ReadPosRankSum=-2.817;SOR=2.990 GT:AD:DP:GQ:PL 0/1:198,16:214:99:125,0,8309 1 13183110 . C A 111.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;CNN_1D=-16.107;DP=218;ExcessHet=3.0103;FS=20.969;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-9.657;QD=0.52;ReadPosRankSum=-2.549;SOR=3.030 GT:AD:DP:GQ:PL 0/1:200,16:216:99:119,0,8362 1 13183115 . G A 137.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;CNN_1D=-16.107;DP=221;ExcessHet=3.0103;FS=28.608;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-9.507;QD=0.63;ReadPosRankSum=-2.833;SOR=3.457 GT:AD:DP:GQ:PL 0/1:200,19:219:99:145,0,8296 1 13183130 . G A 398.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.665;CNN_1D=-16.118;DP=254;ExcessHet=3.0103;FS=44.704;MLEAC=1;MLEAF=0.500;MQ=54.36;MQRankSum=-9.411;QD=1.58;ReadPosRankSum=-0.763;SOR=4.220 GT:AD:DP:GQ:PL 0/1:226,26:252:99:406,0,9336 1 13183138 . T A 462.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.339;CNN_1D=-16.118;DP=266;ExcessHet=3.0103;FS=53.361;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-9.577;QD=1.75;ReadPosRankSum=-0.031;SOR=4.478 GT:AD:DP:GQ:PL 0/1:235,29:264:99:470,0,9520 1 13183165 . T C 1358.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.165;CNN_1D=-16.118;DP=274;ExcessHet=3.0103;FS=102.742;MLEAC=1;MLEAF=0.500;MQ=50.60;MQRankSum=-10.571;QD=4.98;ReadPosRankSum=0.433;SOR=6.184 GT:AD:DP:GQ:PL 0/1:229,44:273:99:1366,0,9331 1 13183168 . A G 1435.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.515;CNN_1D=-16.118;DP=271;ExcessHet=3.0103;FS=103.555;MLEAC=1;MLEAF=0.500;MQ=49.91;MQRankSum=-10.825;QD=5.32;ReadPosRankSum=-0.591;SOR=5.549 GT:AD:DP:GQ:PL 0/1:221,49:270:99:1443,0,9465 1 13183176 . C T 1897.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.553;CNN_1D=-16.118;DP=289;ExcessHet=3.0103;FS=133.354;MLEAC=1;MLEAF=0.500;MQ=48.70;MQRankSum=-11.108;QD=6.59;ReadPosRankSum=-1.613;SOR=5.994 GT:AD:DP:GQ:PL 0/1:227,61:288:99:1905,0,9555 1 13183180 . T C 2074.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.884;CNN_1D=-16.118;DP=291;ExcessHet=3.0103;FS=135.508;MLEAC=1;MLEAF=0.500;MQ=48.25;MQRankSum=-11.137;QD=7.15;ReadPosRankSum=-2.072;SOR=6.123 GT:AD:DP:GQ:PL 0/1:225,65:290:99:2082,0,9417 1 13183187 . A G 2791.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.981;CNN_1D=-16.118;DP=303;ExcessHet=3.0103;FS=141.493;MLEAC=1;MLEAF=0.500;MQ=47.83;MQRankSum=-11.519;QD=9.24;ReadPosRankSum=-2.589;SOR=5.784 GT:AD:DP:GQ:PL 0/1:228,74:302:99:2799,0,9324 1 13183188 . T A 2875.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.021;CNN_1D=-16.118;DP=311;ExcessHet=3.0103;FS=127.840;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-11.868;QD=9.28;ReadPosRankSum=-3.764;SOR=4.829 GT:AD:DP:GQ:PL 0/1:227,83:310:99:2883,0,9318 1 13183195 . A G 3516.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.020;CNN_1D=-16.118;DP=327;ExcessHet=3.0103;FS=110.571;MLEAC=1;MLEAF=0.500;MQ=47.63;MQRankSum=-10.625;QD=10.79;ReadPosRankSum=-4.479;SOR=3.845 GT:AD:DP:GQ:PL 0/1:227,99:326:99:3524,0,9393 1 13183199 . C G 3715.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.397;CNN_1D=-16.118;DP=343;ExcessHet=3.0103;FS=98.960;MLEAC=1;MLEAF=0.500;MQ=47.77;MQRankSum=-10.462;QD=10.90;ReadPosRankSum=-4.330;SOR=3.452 GT:AD:DP:GQ:PL 0/1:232,109:341:99:3723,0,9376 1 13183213 . T A 3699.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.703;CNN_1D=-16.118;DP=388;ExcessHet=3.0103;FS=99.609;MLEAC=1;MLEAF=0.500;MQ=48.59;MQRankSum=-8.039;QD=9.58;ReadPosRankSum=-4.050;SOR=3.047 GT:AD:DP:GQ:PL 0/1:237,149:386:99:3707,0,5710 1 13183225 . T C 6489.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=6.323;CNN_1D=-16.118;DP=410;ExcessHet=3.0103;FS=32.854;MLEAC=1;MLEAF=0.500;MQ=49.03;MQRankSum=-6.905;QD=15.91;ReadPosRankSum=-1.801;SOR=2.356 GT:AD:DP:GQ:PL 0/1:239,169:408:99:6497,0,9539 1 13183228 . C T 6606.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;CNN_1D=-16.118;DP=415;ExcessHet=3.0103;FS=34.900;MLEAC=1;MLEAF=0.500;MQ=49.22;MQRankSum=-6.805;QD=16.00;ReadPosRankSum=-0.930;SOR=2.338 GT:AD:DP:GQ:PL 0/1:241,172:413:99:6614,0,9697 1 13183237 . C T 7328.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.948;CNN_1D=-16.118;DP=442;ExcessHet=3.0103;FS=32.583;MLEAC=1;MLEAF=0.500;MQ=50.08;MQRankSum=-6.170;QD=16.62;ReadPosRankSum=1.136;SOR=2.245 GT:AD:DP:GQ:PL 0/1:252,189:441:99:7336,0,10126 1 13183238 . T C 7325.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=8.024;CNN_1D=-16.118;DP=442;ExcessHet=3.0103;FS=32.184;MLEAC=1;MLEAF=0.500;MQ=50.15;MQRankSum=-5.897;QD=16.61;ReadPosRankSum=1.285;SOR=2.248 GT:AD:DP:GQ:PL 0/1:251,190:441:99:7333,0,10168 1 13183243 . T C 7919.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=6.979;CNN_1D=-16.118;DP=451;ExcessHet=3.0103;FS=34.381;MLEAC=1;MLEAF=0.500;MQ=50.47;MQRankSum=-5.142;QD=17.60;ReadPosRankSum=2.116;SOR=2.230 GT:AD:DP:GQ:PL 0/1:252,198:450:99:7927,0,10042 1 13183248 . T A 7873.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;CNN_1D=-16.117;DP=453;ExcessHet=3.0103;FS=24.986;MLEAC=1;MLEAF=0.500;MQ=50.82;MQRankSum=-4.061;QD=17.42;ReadPosRankSum=2.486;SOR=1.945 GT:AD:DP:GQ:PL 0/1:247,205:452:99:7881,0,10116 1 13183249 . C A 7879.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;CNN_1D=-16.117;DP=455;ExcessHet=3.0103;FS=24.429;MLEAC=1;MLEAF=0.500;MQ=50.85;MQRankSum=-3.964;QD=17.36;ReadPosRankSum=2.555;SOR=1.886 GT:AD:DP:GQ:PL 0/1:247,207:454:99:7887,0,10032 1 13183422 . T C 6039.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;CNN_1D=-16.118;DP=1001;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=4.771;QD=6.05;ReadPosRankSum=1.071;SOR=0.660 GT:AD:DP:GQ:PL 0/1:691,308:999:99:6047,0,16935 1 13183439 . T C 32706.03 CNN_1D_SNP_Tranche_99.95_100.00 AC=2;AF=1.00;AN=2;BaseQRankSum=-1.541;CNN_1D=-16.118;DP=988;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQRankSum=-0.363;QD=33.14;ReadPosRankSum=1.023;SOR=0.230 GT:AD:DP:GQ:PL 1/1:1,986:987:99:32720,2943,0 1 13183511 . T C 16532.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;CNN_1D=-16.118;DP=740;ExcessHet=3.0103;FS=6.106;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-8.949;QD=22.34;ReadPosRankSum=0.010;SOR=1.083 GT:AD:DP:GQ:PL 0/1:283,457:740:99:16540,0,9864 1 13183528 . A C 14166.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=3.814;CNN_1D=-16.118;DP=622;ExcessHet=3.0103;FS=12.195;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-10.308;QD=22.78;ReadPosRankSum=-1.372;SOR=1.390 GT:AD:DP:GQ:PL 0/1:270,352:622:99:14174,0,10661 1 13183532 . C T 13669.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;CNN_1D=-16.118;DP=607;ExcessHet=3.0103;FS=13.634;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=-10.731;QD=22.52;ReadPosRankSum=-1.243;SOR=1.431 GT:AD:DP:GQ:PL 0/1:274,333:607:99:13677,0,10842 1 13183533 . C T 13642.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;CNN_1D=-16.118;DP=602;ExcessHet=3.0103;FS=13.758;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-10.900;QD=22.66;ReadPosRankSum=-1.601;SOR=1.443 GT:AD:DP:GQ:PL 0/1:272,330:602:99:13650,0,10635 1 13183567 . C T 5885.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.986;CNN_1D=-16.118;DP=453;ExcessHet=3.0103;FS=40.798;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-14.702;QD=12.99;ReadPosRankSum=-2.926;SOR=2.520 GT:AD:DP:GQ:PL 0/1:284,169:453:99:5893,0,11371 1 13183573 . G T 5331.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.102;CNN_1D=-16.118;DP=431;ExcessHet=3.0103;FS=46.429;MLEAC=1;MLEAF=0.500;MQ=55.22;MQRankSum=-15.593;QD=12.37;ReadPosRankSum=-2.556;SOR=2.849 GT:AD:DP:GQ:PL 0/1:287,144:431:99:5339,0,11427 1 13183631 . A T 509.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.848;CNN_1D=-16.118;DP=313;ExcessHet=3.0103;FS=95.356;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-16.100;QD=1.63;ReadPosRankSum=-3.753;SOR=7.053 GT:AD:DP:GQ:PL 0/1:280,33:313:99:517,0,11715 1 13183634 . G A 515.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.451;CNN_1D=-16.118;DP=315;ExcessHet=3.0103;FS=92.513;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-15.086;QD=1.64;ReadPosRankSum=-3.939;SOR=6.994 GT:AD:DP:GQ:PL 0/1:283,32:315:99:523,0,11682 1 13219471 . T G 3126.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=4.592;CNN_1D=-16.118;DP=467;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=48.78;MQRankSum=-9.964;QD=6.70;ReadPosRankSum=0.026;SOR=0.738 GT:AD:DP:GQ:PL 0/1:314,153:467:99:3134,0,7263 1 13219498 . C G 2698.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=3.471;CNN_1D=-16.118;DP=396;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=46.52;MQRankSum=-9.505;QD=6.81;ReadPosRankSum=-4.285;SOR=0.770 GT:AD:DP:GQ:PL 0/1:270,126:396:99:2706,0,6541 1 13802325 . T C 1195.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;CNN_1D=1.257;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=-0.135;SOR=0.643 GT:AD:DP:GQ:PL 0/1:30,43:73:99:1203,0,772 1 13802437 . G A 1910.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;CNN_1D=-3.276;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=1.073;SOR=0.679 GT:AD:DP:GQ:PL 0/1:63,84:147:99:1918,0,1250 1 13839770 . C T 1883.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.256;CNN_1D=-2.562;DP=129;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-2.055;SOR=0.782 GT:AD:DP:GQ:PL 0/1:59,70:129:99:1891,0,1389 1 13910417 . C T 1395.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;CNN_1D=-4.327;DP=118;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=-0.065;SOR=0.564 GT:AD:DP:GQ:PL 0/1:58,60:118:99:1403,0,1408 1 13940864 . C G 2841.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.886;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.85;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2855,306,0 1 14143003 . A G 3390.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.055;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.25;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3404,360,0 1 15382607 . G A 1558.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;CNN_1D=-1.260;DP=128;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=1.396;SOR=0.585 GT:AD:DP:GQ:PL 0/1:60,67:127:99:1566,0,1259 1 15438990 . G A 1627.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;CNN_1D=-3.358;DP=138;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.570;SOR=0.620 GT:AD:DP:GQ:PL 0/1:65,73:138:99:1635,0,1439 1 15546077 . G A 1503.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;CNN_1D=-3.934;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.649;SOR=0.653 GT:AD:DP:GQ:PL 0/1:83,68:151:99:1511,0,1988 1 15808767 . G A 1586.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.975;CNN_1D=3.702;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.88;ReadPosRankSum=0.911;SOR=0.399 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1600,144,0 1 15808872 . G A 2673.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.860;CNN_1D=2.684;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQRankSum=-0.154;QD=27.28;ReadPosRankSum=-0.943;SOR=0.735 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2687,244,0 1 15809876 . G A 5340.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.982;CNN_1D=-0.955;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQRankSum=1.485;QD=29.02;ReadPosRankSum=0.292;SOR=0.345 GT:AD:DP:GQ:PL 1/1:1,183:184:99:5354,512,0 1 15812432 . A G 4187.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.604;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.50;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4201,473,0 1 15832543 . T C 2556.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.598;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.08;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2570,293,0 1 15844615 . A G 2853.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.169;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.70;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2867,309,0 1 15850613 . G A 2497.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.828;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.38;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2511,263,0 1 15909850 . C G 3687.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.157;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.72;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3701,398,0 1 15909895 . A G 2795.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.486;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.40;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2809,305,0 1 15911349 . G A 1422.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.065;CNN_1D=3.152;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.83;ReadPosRankSum=-0.397;SOR=0.813 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1436,110,0 1 16069644 . C T 1772.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;CNN_1D=-2.995;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-0.617;SOR=0.652 GT:AD:DP:GQ:PL 0/1:68,73:141:99:1780,0,1523 1 16096934 . C T 1719.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;CNN_1D=-2.662;DP=127;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=1.626;SOR=0.573 GT:AD:DP:GQ:PL 0/1:50,77:127:99:1727,0,1024 1 16342237 . A G 1687.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.647;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.21;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1701,185,0 1 16344360 . A G 3326.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.251;CNN_1D=1.648;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.18;ReadPosRankSum=-0.410;SOR=0.294 GT:AD:DP:GQ:PL 1/1:1,113:114:99:3340,301,0 1 16344402 . G A 3287.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.144;CNN_1D=-0.260;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.51;ReadPosRankSum=0.821;SOR=0.871 GT:AD:DP:GQ:PL 1/1:4,120:124:99:3301,272,0 1 16351275 . A G 2754.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.745;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.72;QD=26.74;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2768,308,0 1 16356501 . G A 3981.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.891;CNN_1D=1.019;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.64;ReadPosRankSum=0.318;SOR=0.799 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3995,368,0 1 16358932 . T C 3938.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.926;CNN_1D=1.623;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.74;ReadPosRankSum=1.930;SOR=0.769 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3952,360,0 1 16371067 . G T 1638.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;CNN_1D=3.506;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.76;ReadPosRankSum=1.153;SOR=0.728 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1652,128,0 1 16373124 . A G 4328.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.316;CNN_1D=-0.411;DP=155;ExcessHet=3.0103;FS=3.391;MLEAC=2;MLEAF=1.00;MQ=59.92;MQRankSum=0.000;QD=27.92;ReadPosRankSum=1.006;SOR=0.521 GT:AD:DP:GQ:PL 1/1:1,154:155:99:4342,426,0 1 16374533 . G C 3165.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.817;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.31;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3179,324,0 1 16374994 . C T 3409.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.047;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.52;QD=29.14;SOR=0.710 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3423,350,0 1 16375063 . C G 4962.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.621;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.22;QD=32.54;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,112:112:99:4976,337,0 1 16375064 . A C 4962.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.196;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.48;QD=30.09;SOR=1.069 GT:AD:DP:GQ:PL 1/1:0,110:110:99:4976,337,0 1 16376191 . C T 3085.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.054;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.83;QD=30.85;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3099,299,0 1 16376319 . T C 3380.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.341;CNN_1D=0.978;DP=124;ExcessHet=3.0103;FS=8.300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.26;ReadPosRankSum=-0.218;SOR=1.028 GT:AD:DP:GQ:PL 1/1:2,122:124:99:3394,299,0 1 16380196 . T C 4765.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.496;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.67;QD=27.54;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4779,518,0 1 16380243 . A G 5853.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.015;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.70;QD=26.10;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,137:137:99:5867,412,0 1 16380252 . C T 5581.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.697;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.85;QD=28.62;SOR=1.125 GT:AD:DP:GQ:PL 1/1:0,125:125:99:5595,379,0 1 16384986 . G T 1674.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;CNN_1D=-7.183;DP=122;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-5.493;QD=13.73;ReadPosRankSum=0.433;SOR=0.775 GT:AD:DP:GQ:PL 0/1:76,46:122:99:1682,0,3907 1 16384998 . G C 1687.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;CNN_1D=-6.375;DP=124;ExcessHet=3.0103;FS=3.427;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-5.175;QD=13.61;ReadPosRankSum=1.375;SOR=1.055 GT:AD:DP:GQ:PL 0/1:79,45:124:99:1695,0,4141 1 16384999 . G A 1687.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;CNN_1D=-6.688;DP=124;ExcessHet=3.0103;FS=3.373;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-5.271;QD=13.61;ReadPosRankSum=1.146;SOR=1.020 GT:AD:DP:GQ:PL 0/1:78,46:124:99:1695,0,4141 1 16385042 . G A 1381.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;CNN_1D=-8.056;DP=144;ExcessHet=3.0103;FS=7.483;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=-3.514;QD=9.59;ReadPosRankSum=-0.285;SOR=1.086 GT:AD:DP:GQ:PL 0/1:82,62:144:99:1389,0,1953 1 16385175 . G A 5456.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.584;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=46.24;QD=28.78;SOR=1.195 GT:AD:DP:GQ:PL 1/1:0,144:144:99:5470,432,0 1 16385184 . G A 2018.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;CNN_1D=-6.191;DP=136;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=46.15;MQRankSum=-1.403;QD=14.95;ReadPosRankSum=0.908;SOR=0.536 GT:AD:DP:GQ:PL 0/1:51,84:135:99:2026,0,1058 1 16385980 . G A 1916.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.424;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.70;QD=28.60;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1930,201,0 1 16386008 . T C 1888.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.130;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.13;QD=28.18;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1902,200,0 1 16386416 . G A 4717.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.421;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.82;QD=27.91;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4731,507,0 1 16386447 . G C 4148.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.383;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.52;QD=26.94;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4162,461,0 1 16386495 . C T 2793.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.870;CNN_1D=2.386;DP=95;ExcessHet=3.0103;FS=4.864;MLEAC=2;MLEAF=1.00;MQ=53.65;MQRankSum=1.816;QD=29.40;ReadPosRankSum=-1.642;SOR=1.536 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2807,244,0 1 16388646 . T C 3257.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.790;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.17;QD=28.57;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3271,342,0 1 16451767 . G A 852.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;CNN_1D=-2.197;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.673;SOR=0.718 GT:AD:DP:GQ:PL 0/1:62,44:106:99:860,0,1385 1 16459745 . G A 1725.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;CNN_1D=-4.205;DP=158;ExcessHet=3.0103;FS=3.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=2.180;SOR=1.002 GT:AD:DP:GQ:PL 0/1:84,74:158:99:1733,0,1856 1 16641899 . C T 1589.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.582;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.43;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1603,162,0 1 16730308 . G T 1489.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;CNN_1D=-3.798;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-4.040;SOR=0.665 GT:AD:DP:GQ:PL 0/1:67,64:131:99:1497,0,1470 1 16736132 . T C 664.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;CNN_1D=0.366;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-1.915;SOR=0.745 GT:AD:DP:GQ:PL 0/1:38,30:68:99:672,0,965 1 16736546 . C T 2300.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.483;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.87;SOR=1.640 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2314,231,0 1 16865770 . CT C 311.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.938;CNN_1D=-14.375;DP=109;ExcessHet=3.0103;FS=15.374;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=-9.192;QD=2.86;ReadPosRankSum=1.130;SOR=2.191 GT:AD:DP:GQ:PL 0/1:88,21:109:99:319,0,2590 1 16866033 . C T 1623.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;CNN_1D=-3.068;DP=113;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=50.08;MQRankSum=-0.398;QD=14.37;ReadPosRankSum=-1.123;SOR=0.773 GT:AD:DP:GQ:PL 0/1:51,62:113:99:1631,0,1212 1 17248532 . A G 3934.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.017;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.30;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3948,416,0 1 17270751 . G A 218.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;CNN_1D=0.223;DP=22;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-1.750;SOR=1.609 GT:AD:DP:GQ:PL 0/1:12,10:22:99:226,0,281 1 17287414 . T C 320.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;CNN_1D=2.326;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-1.344;SOR=0.818 GT:AD:DP:GQ:PL 0/1:12,15:27:99:328,0,243 1 17295679 . T C 4603.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.207;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.09;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4617,459,0 1 17301448 . C T 763.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;CNN_1D=0.465;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.72;MQRankSum=3.066;QD=13.40;ReadPosRankSum=-1.374;SOR=0.737 GT:AD:DP:GQ:PL 0/1:28,29:57:99:771,0,799 1 17301780 . A G 1407.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;CNN_1D=-3.719;DP=141;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=1.388;SOR=0.935 GT:AD:DP:GQ:PL 0/1:77,64:141:99:1415,0,1793 1 17312743 . C T 1703.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;CNN_1D=-5.769;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.743;SOR=0.681 GT:AD:DP:GQ:PL 0/1:95,76:171:99:1711,0,2157 1 17313343 . G A 1550.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;CNN_1D=-4.962;DP=156;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-0.347;SOR=0.749 GT:AD:DP:GQ:PL 0/1:84,72:156:99:1558,0,1877 1 17313454 . G A 957.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.648;CNN_1D=-2.675;DP=100;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-1.958;SOR=0.892 GT:AD:DP:GQ:PL 0/1:54,46:100:99:965,0,1555 1 17313654 . C T 2298.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.854;CNN_1D=-6.522;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=1.181;SOR=0.711 GT:AD:DP:GQ:PL 0/1:90,109:199:99:2306,0,2068 1 17314702 . C T 1616.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;CNN_1D=-3.429;DP=142;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.105;SOR=0.499 GT:AD:DP:GQ:PL 0/1:74,67:141:99:1624,0,1748 1 17314942 . G A 1802.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;CNN_1D=-5.151;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-0.452;SOR=0.693 GT:AD:DP:GQ:PL 0/1:82,82:164:99:1810,0,1893 1 17319011 . G A 1861.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;CNN_1D=-2.284;DP=132;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=1.518;SOR=0.789 GT:AD:DP:GQ:PL 0/1:58,74:132:99:1869,0,1365 1 17380497 . G T 3174.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.328;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.60;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3188,344,0 1 17396703 . T C 1676.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.277;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.90;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1690,174,0 1 17402255 . C T 3749.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.881;CNN_1D=-0.075;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.57;ReadPosRankSum=-0.787;SOR=0.754 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3763,358,0 1 17405809 . G A 3768.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;CNN_1D=0.516;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.54;ReadPosRankSum=1.255;SOR=0.751 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3782,375,0 1 17405916 . C T 1770.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.733;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.55;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1784,186,0 1 17418894 . A G 1251.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;CNN_1D=-0.887;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-1.558;SOR=0.756 GT:AD:DP:GQ:PL 0/1:39,53:92:99:1259,0,868 1 17555508 . G T 1538.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;CNN_1D=-4.308;DP=150;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.321;SOR=0.892 GT:AD:DP:GQ:PL 0/1:81,69:150:99:1546,0,1812 1 17557133 . A C 1968.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.708;CNN_1D=3.738;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.59;ReadPosRankSum=1.078;SOR=0.266 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1982,183,0 1 17557178 . C T 645.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;CNN_1D=1.120;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.328;SOR=0.738 GT:AD:DP:GQ:PL 0/1:27,30:57:99:653,0,597 1 17718671 . AG A 3948.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.454;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.49;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3962,334,0 1 17739586 . G A 3500.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.177;CNN_1D=1.161;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.92;ReadPosRankSum=-0.216;SOR=0.862 GT:AD:DP:GQ:PL 1/1:4,126:130:99:3514,290,0 1 17991052 . T C 3277.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.116;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.75;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3291,342,0 1 18023365 . C T 2400.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.481;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.24;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2414,255,0 1 18023509 . T C 3560.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.863;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.67;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3574,360,0 1 18023690 . A G 2871.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.632;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.43;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2885,303,0 1 18704829 . G A 1082.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;CNN_1D=-1.037;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=1.389;SOR=0.714 GT:AD:DP:GQ:PL 0/1:59,46:105:99:1090,0,1306 1 18807897 . C G 1279.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;CNN_1D=-4.152;DP=137;ExcessHet=3.0103;FS=2.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-0.007;SOR=0.906 GT:AD:DP:GQ:PL 0/1:79,58:137:99:1287,0,2063 1 18807953 . C A 1571.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;CNN_1D=-3.415;DP=136;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.383;SOR=0.644 GT:AD:DP:GQ:PL 0/1:69,67:136:99:1579,0,1625 1 18808292 . C A 2230.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;CNN_1D=-3.745;DP=161;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=0.087;SOR=0.561 GT:AD:DP:GQ:PL 0/1:73,88:161:99:2238,0,1745 1 18808465 . T A 1579.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;CNN_1D=-1.134;DP=113;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=-0.090;SOR=0.933 GT:AD:DP:GQ:PL 0/1:50,63:113:99:1587,0,1241 1 18808526 . A C 2027.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;CNN_1D=-3.159;DP=140;ExcessHet=3.0103;FS=3.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=-1.473;SOR=0.660 GT:AD:DP:GQ:PL 0/1:59,80:139:99:2035,0,1384 1 19018405 . G A 2090.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;CNN_1D=-4.432;DP=162;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=-0.892;SOR=0.747 GT:AD:DP:GQ:PL 0/1:75,87:162:99:2098,0,1632 1 19018432 . A C 1317.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;CNN_1D=-2.439;DP=115;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=0.895;SOR=0.796 GT:AD:DP:GQ:PL 0/1:57,58:115:99:1325,0,1262 1 19027239 . A G 2583.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;CNN_1D=-10.853;DP=257;ExcessHet=3.0103;FS=1.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=-1.637;SOR=0.691 GT:AD:DP:GQ:PL 0/1:138,119:257:99:2591,0,3086 1 19181015 . G C 1662.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;CNN_1D=-2.127;DP=131;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-0.652;SOR=0.616 GT:AD:DP:GQ:PL 0/1:66,65:131:99:1670,0,1568 1 19181082 . A C 1432.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.246;CNN_1D=-3.121;DP=135;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.546;SOR=0.674 GT:AD:DP:GQ:PL 0/1:67,68:135:99:1440,0,1588 1 19181393 . T C 775.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;CNN_1D=1.518;DP=65;ExcessHet=3.0103;FS=2.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-1.383;SOR=0.404 GT:AD:DP:GQ:PL 0/1:30,35:65:99:783,0,722 1 19184077 . A G 1632.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;CNN_1D=-2.937;DP=133;ExcessHet=3.0103;FS=4.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-1.260;SOR=0.421 GT:AD:DP:GQ:PL 0/1:61,72:133:99:1640,0,1528 1 19186129 . G C 4918.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.252;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.59;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4932,515,0 1 19201956 . A G 1539.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;CNN_1D=-3.974;DP=142;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-1.055;SOR=0.589 GT:AD:DP:GQ:PL 0/1:71,71:142:99:1547,0,1575 1 19202917 . T C 1461.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;CNN_1D=-2.414;DP=124;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=1.024;SOR=0.941 GT:AD:DP:GQ:PL 0/1:80,43:123:99:1469,0,3968 1 19202926 . T C 1461.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;CNN_1D=-1.327;DP=107;ExcessHet=3.0103;FS=1.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=0.403;SOR=0.932 GT:AD:DP:GQ:PL 0/1:67,39:106:99:1469,0,3680 1 19411129 . A G 1171.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;CNN_1D=-0.097;DP=96;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-0.125;SOR=0.524 GT:AD:DP:GQ:PL 0/1:43,53:96:99:1179,0,965 1 19413261 . T A 1427.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;CNN_1D=-2.403;DP=130;ExcessHet=3.0103;FS=2.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-1.262;SOR=0.901 GT:AD:DP:GQ:PL 0/1:65,65:130:99:1435,0,1508 1 19415304 . C T 1084.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434;CNN_1D=0.841;DP=89;ExcessHet=3.0103;FS=8.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=2.305;SOR=0.405 GT:AD:DP:GQ:PL 0/1:39,50:89:99:1092,0,930 1 19433449 . A G 963.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;CNN_1D=0.971;DP=71;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=0.093;SOR=0.917 GT:AD:DP:GQ:PL 0/1:31,40:71:99:971,0,654 1 19447832 . T C 1620.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;CNN_1D=-0.915;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=-1.331;SOR=0.691 GT:AD:DP:GQ:PL 0/1:65,44:109:99:1628,0,3314 1 19447843 . C G 1686.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;CNN_1D=-1.559;DP=120;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-0.425;SOR=0.794 GT:AD:DP:GQ:PL 0/1:73,47:120:99:1694,0,3486 1 19510394 . A G 775.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;CNN_1D=2.250;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=1.212;SOR=0.693 GT:AD:DP:GQ:PL 0/1:25,31:56:99:783,0,598 1 19609254 . T C 1817.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;CNN_1D=-7.093;DP=169;ExcessHet=3.0103;FS=7.908;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-3.406;QD=10.82;ReadPosRankSum=-0.957;SOR=0.334 GT:AD:DP:GQ:PL 0/1:86,82:168:99:1825,0,1938 1 19609362 . G A 2053.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030;CNN_1D=0.619;DP=128;ExcessHet=3.0103;FS=7.516;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=3.467;QD=16.04;ReadPosRankSum=1.872;SOR=0.320 GT:AD:DP:GQ:PL 0/1:39,89:128:99:2061,0,764 1 19611241 . T C 1651.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;CNN_1D=-5.846;DP=155;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.554;QD=10.66;ReadPosRankSum=-0.858;SOR=0.779 GT:AD:DP:GQ:PL 0/1:85,70:155:99:1659,0,1955 1 19652063 . G A 926.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;CNN_1D=-0.384;DP=94;ExcessHet=3.0103;FS=2.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.280;SOR=0.822 GT:AD:DP:GQ:PL 0/1:50,44:94:99:934,0,1135 1 20009790 . C T 1561.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;CNN_1D=-3.087;DP=139;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=-0.940;SOR=0.888 GT:AD:DP:GQ:PL 0/1:71,68:139:99:1569,0,1692 1 20020993 . A G 3015.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.677;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.32;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,67:67:99:3029,205,0 1 20020994 . C T 3015.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.264;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.37;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,68:68:99:3029,205,0 1 20097822 . G A 880.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;CNN_1D=-4.086;DP=128;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-1.175;SOR=0.807 GT:AD:DP:GQ:PL 0/1:82,46:128:99:888,0,1804 1 20097941 . G T 1157.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;CNN_1D=-2.700;DP=127;ExcessHet=3.0103;FS=2.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=0.277;SOR=0.556 GT:AD:DP:GQ:PL 0/1:69,57:126:99:1165,0,1605 1 20224152 . G A 673.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;CNN_1D=-1.317;DP=80;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.831;SOR=1.279 GT:AD:DP:GQ:PL 0/1:51,29:80:99:681,0,1217 1 20249253 . A AGAGAGG 755.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;CNN_1D=-0.100;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=1.651;SOR=0.569 GT:AD:DP:GQ:PL 0/1:22,20:42:99:763,0,1011 1 20442054 . T C 4026.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.358;CNN_1D=0.943;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.96;ReadPosRankSum=1.035;SOR=0.265 GT:AD:DP:GQ:PL 1/1:1,143:144:99:4040,395,0 1 20945055 . C T 1350.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.758;CNN_1D=2.833;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=-0.397;SOR=0.994 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1364,109,0 1 20964328 . A G 2394.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.547;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.50;SOR=1.582 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2408,252,0 1 20972048 . G A 2427.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.253;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.89;SOR=1.347 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2441,250,0 1 20977000 . A C 4273.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.396;CNN_1D=-1.075;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.38;ReadPosRankSum=-1.095;SOR=0.455 GT:AD:DP:GQ:PL 1/1:5,157:162:99:4287,349,0 1 20982631 . G A 2823.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.181;CNN_1D=2.232;DP=108;ExcessHet=3.0103;FS=3.259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=-1.027;SOR=0.434 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2837,281,0 1 20987873 . G C 2447.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.023;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.21;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2461,243,0 1 20992819 . G C 4396.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.996;CNN_1D=-0.067;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.92;ReadPosRankSum=0.752;SOR=0.804 GT:AD:DP:GQ:PL 1/1:2,150:152:99:4410,407,0 1 21031042 . T C 1491.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;CNN_1D=-2.194;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=-1.702;SOR=0.701 GT:AD:DP:GQ:PL 0/1:59,64:123:99:1499,0,1348 1 21042094 . G A 1400.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;CNN_1D=-3.994;DP=142;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=1.837;SOR=0.653 GT:AD:DP:GQ:PL 0/1:77,65:142:99:1408,0,1689 1 21044161 . A G 2845.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.331;CNN_1D=2.916;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.27;ReadPosRankSum=0.553;SOR=0.551 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2859,245,0 1 21050958 . C T 4175.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.333;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.21;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4189,443,0 1 21167404 . A G 4215.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.118;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.91;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4229,452,0 1 21571601 . G A 1585.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;CNN_1D=-2.354;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-0.220;SOR=0.713 GT:AD:DP:GQ:PL 0/1:60,70:130:99:1593,0,1305 1 21795388 . A G 1858.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.641;CNN_1D=3.383;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.59;ReadPosRankSum=-0.667;SOR=0.628 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1872,158,0 1 21799979 . G A 1475.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;CNN_1D=-4.592;DP=159;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=0.662;SOR=0.763 GT:AD:DP:GQ:PL 0/1:90,69:159:99:1483,0,1984 1 21806619 . T C 571.02 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.124;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.44;QD=34.62;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,13:13:39:585,39,0 1 21806621 . T G 571.02 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.676;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.44;QD=32.25;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,13:13:39:585,39,0 1 21806624 . A G 571.02 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.802;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.44;QD=35.86;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,13:13:39:585,39,0 1 21808159 . G A 589.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;CNN_1D=1.182;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.22;MQRankSum=0.871;QD=16.38;ReadPosRankSum=0.165;SOR=0.586 GT:AD:DP:GQ:PL 0/1:9,27:36:99:597,0,139 1 21808207 . A C 418.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;CNN_1D=0.936;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.25;MQRankSum=0.669;QD=19.93;ReadPosRankSum=0.583;SOR=0.387 GT:AD:DP:GQ:PL 0/1:4,17:21:72:426,0,72 1 21808223 . T C 306.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;CNN_1D=1.370;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.89;MQRankSum=0.496;QD=21.90;ReadPosRankSum=-0.275;SOR=1.445 GT:AD:DP:GQ:PL 0/1:2,12:14:27:314,0,27 1 21809750 . T C 664.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.863;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.30;QD=33.20;SOR=1.721 GT:AD:DP:GQ:PL 1/1:0,20:20:60:678,60,0 1 21809850 . T C 96.80 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=0.736;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=33.36;QD=32.27;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:110,9,0 1 21889635 . T C 4135.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.040;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.12;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4149,426,0 1 21932625 . G A 1080.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;CNN_1D=-2.009;DP=103;ExcessHet=3.0103;FS=3.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-1.380;SOR=0.873 GT:AD:DP:GQ:PL 0/1:53,50:103:99:1088,0,1115 1 21935433 . G T 2289.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.037;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.58;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2303,249,0 1 21940555 . C T 943.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;CNN_1D=0.501;DP=79;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=0.113;SOR=0.821 GT:AD:DP:GQ:PL 0/1:37,42:79:99:951,0,794 1 21943820 . G A 1076.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;CNN_1D=-2.174;DP=107;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=1.015;SOR=0.939 GT:AD:DP:GQ:PL 0/1:59,48:107:99:1084,0,1451 1 22109370 . G A 2005.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;CNN_1D=-7.348;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-1.562;SOR=0.676 GT:AD:DP:GQ:PL 0/1:117,90:207:99:2013,0,2838 1 22141206 . A C 1373.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.926;CNN_1D=-3.280;DP=124;ExcessHet=3.0103;FS=3.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=0.083;SOR=1.087 GT:AD:DP:GQ:PL 0/1:71,51:122:99:1381,0,1676 1 22149935 . T C 1009.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;CNN_1D=-0.442;DP=94;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.284;SOR=0.999 GT:AD:DP:GQ:PL 0/1:49,45:94:99:1017,0,1132 1 22155353 . G A 1434.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.194;CNN_1D=-0.162;DP=103;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=-1.014;SOR=0.484 GT:AD:DP:GQ:PL 0/1:44,59:103:99:1442,0,1060 1 22191454 . G A 5965.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.623;CNN_1D=-3.783;DP=222;ExcessHet=3.0103;FS=2.089;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.99;ReadPosRankSum=0.318;SOR=0.419 GT:AD:DP:GQ:PL 1/1:3,218:221:99:5979,572,0 1 22199245 . C T 834.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;CNN_1D=2.032;DP=63;ExcessHet=3.0103;FS=3.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=3.056;SOR=0.586 GT:AD:DP:GQ:PL 0/1:26,36:62:99:842,0,612 1 22206649 . T C 3965.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.033;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.94;SOR=1.122 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3979,411,0 1 22206942 . G A 5667.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.339;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.05;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5681,606,0 1 22207235 . T C 6474.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-4.987;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.91;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,232:232:99:6488,695,0 1 22214127 . A G 1955.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;CNN_1D=-4.549;DP=164;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-0.649;SOR=0.770 GT:AD:DP:GQ:PL 0/1:78,86:164:99:1963,0,1723 1 22216574 . C A 2094.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;CNN_1D=-8.950;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=1.249;SOR=0.678 GT:AD:DP:GQ:PL 0/1:133,96:229:99:2102,0,3156 1 22216604 . C G 1959.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;CNN_1D=-7.669;DP=198;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-0.470;SOR=0.959 GT:AD:DP:GQ:PL 0/1:111,87:198:99:1967,0,2627 1 22217108 . G A 5030.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.472;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.08;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5044,519,0 1 22307340 . C T 2508.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.484;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.33;QD=30.59;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2522,245,0 1 22307358 . C G 3025.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.820;CNN_1D=0.589;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQRankSum=0.193;QD=28.27;ReadPosRankSum=-1.231;SOR=0.481 GT:AD:DP:GQ:PL 1/1:1,106:107:99:3039,310,0 1 22307538 . C T 5446.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.064;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.76;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5460,549,0 1 22310262 . G C 5393.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-4.094;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.98;QD=27.38;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5407,590,0 1 22310674 . C T 2316.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.948;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.08;SOR=1.300 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2330,231,0 1 22310725 . G C 3542.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.287;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.56;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3556,372,0 1 22310824 . T C 3311.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.305;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.20;QD=27.14;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3325,365,0 1 22313161 . T C 2908.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.341;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.52;QD=26.44;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2922,329,0 1 22332008 . T C 773.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;CNN_1D=-16.118;DP=281;ExcessHet=3.0103;FS=8.222;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=-15.172;QD=2.76;ReadPosRankSum=-0.440;SOR=0.809 GT:AD:DP:GQ:PL 0/1:219,61:280:99:781,0,5094 1 22336277 . C G 3688.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.602;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.37;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3702,389,0 1 22336305 . C T 4979.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.975;CNN_1D=6.092;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQRankSum=5.362;QD=29.87;ReadPosRankSum=1.708;SOR=0.881 GT:AD:DP:GQ:PL 1/1:2,114:116:99:4993,262,0 1 22336308 . G A 4979.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.002;CNN_1D=4.998;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQRankSum=4.300;QD=29.77;ReadPosRankSum=1.637;SOR=0.862 GT:AD:DP:GQ:PL 1/1:2,113:115:99:4993,262,0 1 22832743 . A T 916.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;CNN_1D=-0.072;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=0.654;SOR=0.604 GT:AD:DP:GQ:PL 0/1:41,41:82:99:924,0,943 1 22835677 . A G 973.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;CNN_1D=-3.896;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=0.411;SOR=0.735 GT:AD:DP:GQ:PL 0/1:82,50:132:99:981,0,1823 1 22837849 . C T 353.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;CNN_1D=-0.509;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=-1.490;SOR=0.534 GT:AD:DP:GQ:PL 0/1:37,18:55:99:361,0,837 1 22846709 . G A 5123.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.730;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.30;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5137,543,0 1 22902772 . C T 1551.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;CNN_1D=-5.389;DP=151;ExcessHet=3.0103;FS=3.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-0.399;SOR=1.023 GT:AD:DP:GQ:PL 0/1:77,73:150:99:1559,0,1787 1 22915753 . T C 1738.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;CNN_1D=-3.008;DP=143;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=0.327;SOR=0.508 GT:AD:DP:GQ:PL 0/1:70,73:143:99:1746,0,1564 1 22919904 . C T 884.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;CNN_1D=1.018;DP=70;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=1.557;SOR=0.846 GT:AD:DP:GQ:PL 0/1:36,34:70:99:892,0,825 1 22920094 . C G 1894.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;CNN_1D=-5.732;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.357;SOR=0.697 GT:AD:DP:GQ:PL 0/1:94,86:180:99:1902,0,2152 1 22924364 . G A 868.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;CNN_1D=0.766;DP=71;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=0.489;SOR=1.000 GT:AD:DP:GQ:PL 0/1:35,36:71:99:876,0,881 1 22965438 . A G 1602.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;CNN_1D=-2.971;DP=145;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=1.510;SOR=0.546 GT:AD:DP:GQ:PL 0/1:77,68:145:99:1610,0,1887 1 23219493 . T C 3062.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.971;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.44;SOR=0.900 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3076,311,0 1 23357078 . T A 104.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.534;CNN_1D=-15.434;DP=153;ExcessHet=3.0103;FS=200.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=1.549;SOR=7.700 GT:AD:DP:GQ:PL 0/1:104,46:150:99:112,0,1835 1 23418153 . C T 4242.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;CNN_1D=0.475;DP=147;ExcessHet=3.0103;FS=3.478;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.86;ReadPosRankSum=1.179;SOR=0.584 GT:AD:DP:GQ:PL 1/1:1,146:147:99:4256,401,0 1 23419261 . G A 4030.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.084;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.85;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4044,404,0 1 23419374 . G T 4067.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.489;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.34;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,91:91:99:4081,280,0 1 23419383 . C T 4036.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.684;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.13;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,92:92:99:4050,280,0 1 23419855 . T C 2609.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.971;CNN_1D=2.543;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.76;ReadPosRankSum=-0.826;SOR=0.782 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2623,231,0 1 23689083 . G A 1349.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;CNN_1D=-1.490;DP=110;ExcessHet=3.0103;FS=1.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=-1.002;SOR=0.782 GT:AD:DP:GQ:PL 0/1:54,56:110:99:1357,0,1233 1 23836364 . A G 1017.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;CNN_1D=1.081;DP=74;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.866;SOR=0.536 GT:AD:DP:GQ:PL 0/1:31,43:74:99:1025,0,721 1 23842861 . G A 1237.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;CNN_1D=-1.973;DP=113;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=1.251;SOR=0.900 GT:AD:DP:GQ:PL 0/1:59,54:113:99:1245,0,1324 1 23847464 . C A 1661.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;CNN_1D=-3.149;DP=144;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-0.420;SOR=0.567 GT:AD:DP:GQ:PL 0/1:65,79:144:99:1669,0,1406 1 23885498 . T C 4305.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.213;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.14;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4319,458,0 1 24134721 . T C 2756.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.722;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.12;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2770,294,0 1 24201094 . G C 2358.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.258;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.23;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2372,234,0 1 24201109 . C T 2630.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.338;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.58;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2644,258,0 1 24201262 . A G 3575.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.606;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.36;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3589,342,0 1 24201357 . A G 4413.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.384;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.43;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4427,435,0 1 24201448 . C T 4098.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.557;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.91;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4112,411,0 1 24201643 . G A 5792.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.374;CNN_1D=-3.514;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.71;ReadPosRankSum=1.674;SOR=0.763 GT:AD:DP:GQ:PL 1/1:4,205:209:99:5806,526,0 1 24201919 . T C 6350.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.129;CNN_1D=1.072;DP=146;ExcessHet=3.0103;FS=3.323;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.00;ReadPosRankSum=1.588;SOR=0.473 GT:AD:DP:GQ:PL 1/1:1,143:144:99:6364,367,0 1 24201920 . T C 6350.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.114;CNN_1D=1.259;DP=147;ExcessHet=3.0103;FS=3.353;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.41;ReadPosRankSum=1.565;SOR=0.495 GT:AD:DP:GQ:PL 1/1:1,144:145:99:6364,367,0 1 24294450 . C CA 947.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;CNN_1D=-2.014;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.923;SOR=0.735 GT:AD:DP:GQ:PL 0/1:38,64:102:99:955,0,387 1 24406535 . G A 3048.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.506;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.49;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3062,321,0 1 24416059 . T C 3028.91 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.088;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.79;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3047,326,0 1 24418768 . T C 3349.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.650;CNN_1D=1.254;DP=124;ExcessHet=3.0103;FS=3.340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.23;ReadPosRankSum=-1.367;SOR=0.490 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3363,331,0 1 24419496 . A G 3055.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.823;CNN_1D=1.714;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=2.090;SOR=0.802 GT:AD:DP:GQ:PL 1/1:2,114:116:99:3069,298,0 1 24421334 . G T 1922.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.337;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.27;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1936,204,0 1 24421474 . G A 2386.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.106;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.07;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2400,255,0 1 24421950 . C G 3908.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.413;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.16;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3922,402,0 1 24448084 . G A 1862.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;CNN_1D=-5.953;DP=183;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=2.090;SOR=0.902 GT:AD:DP:GQ:PL 0/1:100,82:182:99:1870,0,2320 1 24460797 . T G 1008.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;CNN_1D=-4.278;DP=137;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-1.670;SOR=0.784 GT:AD:DP:GQ:PL 0/1:87,50:137:99:1016,0,1923 1 24465113 . C T 1257.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;CNN_1D=-2.702;DP=121;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=2.242;SOR=0.610 GT:AD:DP:GQ:PL 0/1:63,58:121:99:1265,0,1400 1 24668667 . C G 1392.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;CNN_1D=-4.101;DP=141;ExcessHet=3.0103;FS=6.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.255;SOR=0.793 GT:AD:DP:GQ:PL 0/1:78,63:141:99:1400,0,1934 1 24680915 . C T 1224.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;CNN_1D=-2.874;DP=120;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=1.518;SOR=0.765 GT:AD:DP:GQ:PL 0/1:63,56:119:99:1232,0,1424 1 24706269 . A G 1451.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;CNN_1D=-4.159;DP=144;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.004;SOR=0.705 GT:AD:DP:GQ:PL 0/1:76,68:144:99:1459,0,1721 1 24706292 . T C 1240.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;CNN_1D=-2.854;DP=125;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=2.024;SOR=0.573 GT:AD:DP:GQ:PL 0/1:69,56:125:99:1248,0,1613 1 24718075 . T C 1065.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;CNN_1D=0.092;DP=89;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=-0.495;SOR=0.602 GT:AD:DP:GQ:PL 0/1:40,48:88:99:1073,0,826 1 24785393 . C T 572.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;CNN_1D=-0.898;DP=78;ExcessHet=3.0103;FS=1.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=0.921;SOR=0.817 GT:AD:DP:GQ:PL 0/1:49,29:78:99:580,0,1130 1 24859617 . G A 697.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;CNN_1D=-2.551;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-0.665;SOR=0.726 GT:AD:DP:GQ:PL 0/1:75,36:111:99:705,0,1698 1 24859665 . G A 733.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;CNN_1D=-4.248;DP=122;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-1.073;SOR=0.892 GT:AD:DP:GQ:PL 0/1:80,42:122:99:741,0,1841 1 24861704 . G A 2578.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;CNN_1D=-7.900;DP=230;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=0.634;SOR=0.589 GT:AD:DP:GQ:PL 0/1:110,118:228:99:2586,0,2365 1 24987299 . G T 696.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.822;CNN_1D=-1.080;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.582;SOR=0.752 GT:AD:DP:GQ:PL 0/1:42,33:75:99:704,0,862 1 25291010 . A T 907.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;CNN_1D=-1.282;DP=93;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-1.309;SOR=0.980 GT:AD:DP:GQ:PL 0/1:51,42:93:99:915,0,1136 1 25747230 . G C 1041.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.454;CNN_1D=-0.198;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=35.74;MQRankSum=-2.526;QD=31.55;ReadPosRankSum=0.717;SOR=0.892 GT:AD:DP:GQ:PL 1/1:2,31:33:50:1055,50,0 1 25889632 . T C 560.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;CNN_1D=0.580;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=0.461;SOR=0.698 GT:AD:DP:GQ:PL 0/1:32,23:55:99:568,0,737 1 25890189 . A G 996.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;CNN_1D=-1.322;DP=103;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.108;SOR=0.920 GT:AD:DP:GQ:PL 0/1:55,48:103:99:1004,0,1302 1 26131654 . G A 2799.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.144;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.99;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2813,300,0 1 26138262 . T C 3603.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.439;CNN_1D=2.787;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.53;ReadPosRankSum=-0.206;SOR=0.328 GT:AD:DP:GQ:PL 1/1:1,117:118:99:3617,315,0 1 26140573 . C A 3977.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.275;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.81;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3991,428,0 1 26357667 . G A 3857.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.804;CNN_1D=0.480;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.16;ReadPosRankSum=1.022;SOR=0.910 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3871,345,0 1 26385003 . T C 3615.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.529;CNN_1D=1.927;DP=126;ExcessHet=3.0103;FS=2.145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.69;ReadPosRankSum=0.080;SOR=0.481 GT:AD:DP:GQ:PL 1/1:3,123:126:99:3629,290,0 1 26448447 . A G 549.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;CNN_1D=0.999;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=0.462;SOR=0.675 GT:AD:DP:GQ:PL 0/1:41,24:65:99:557,0,1050 1 26448849 . T C 1119.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;CNN_1D=-0.188;DP=91;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=-1.509;SOR=0.434 GT:AD:DP:GQ:PL 0/1:45,46:91:99:1127,0,1186 1 26496651 . T C 1057.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;CNN_1D=-1.738;DP=111;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=0.859;SOR=0.530 GT:AD:DP:GQ:PL 0/1:66,45:111:99:1065,0,1744 1 26504036 . G A 1354.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;CNN_1D=-1.585;DP=121;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=1.040;SOR=0.808 GT:AD:DP:GQ:PL 0/1:62,59:121:99:1362,0,1385 1 26509685 . C CAG 1129.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;CNN_1D=0.527;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.22;ReadPosRankSum=-0.409;SOR=0.732 GT:AD:DP:GQ:PL 0/1:33,29:62:99:1137,0,1320 1 26515956 . C A 3008.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;CNN_1D=-10.767;DP=271;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-1.592;SOR=0.680 GT:AD:DP:GQ:PL 0/1:136,135:271:99:3016,0,3105 1 26517267 . A G 919.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;CNN_1D=-1.361;DP=98;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=1.591;SOR=0.602 GT:AD:DP:GQ:PL 0/1:56,42:98:99:927,0,1265 1 26517773 . T C 2257.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;CNN_1D=0.165;DP=114;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.80;ReadPosRankSum=-0.726;SOR=0.609 GT:AD:DP:GQ:PL 0/1:55,59:114:99:2265,0,2653 1 26517794 . A G 2563.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;CNN_1D=-1.498;DP=141;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.18;ReadPosRankSum=0.149;SOR=0.594 GT:AD:DP:GQ:PL 0/1:67,74:141:99:2571,0,2986 1 26517891 . C T 2163.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;CNN_1D=-6.749;DP=194;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=0.088;SOR=0.907 GT:AD:DP:GQ:PL 0/1:94,100:194:99:2171,0,1957 1 26526439 . A G 1944.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;CNN_1D=-8.289;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=0.289;SOR=0.677 GT:AD:DP:GQ:PL 0/1:119,96:215:99:1952,0,2551 1 26527863 . C T 1382.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;CNN_1D=-0.633;DP=99;ExcessHet=3.0103;FS=3.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.97;ReadPosRankSum=-0.133;SOR=0.798 GT:AD:DP:GQ:PL 0/1:39,60:99:99:1390,0,784 1 26608814 . A G 3179.60 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.540;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.19;QD=30.96;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,81:81:99:3446,244,0 1 26608825 . TGGGGCCG T 520.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;CNN_1D=-4.547;DP=95;ExcessHet=3.0103;FS=12.641;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=1.070;QD=6.12;ReadPosRankSum=0.645;SOR=2.348 GT:AD:DP:GQ:PL 0/1:67,18:85:99:528,0,2268 1 26608835 . ACCGGGACCGGGACTGGG A 528.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;CNN_1D=-5.081;DP=93;ExcessHet=3.0103;FS=14.224;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=1.200;QD=6.37;ReadPosRankSum=-2.837;SOR=2.406 GT:AD:DP:GQ:PL 0/1:62,21:83:99:536,0,2274 1 26608865 . ACC A 1898.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;CNN_1D=1.203;DP=83;ExcessHet=3.0103;FS=12.300;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-0.853;QD=25.65;ReadPosRankSum=1.348;SOR=0.102 GT:AD:DP:GQ:PL 0/1:21,53:74:99:2005,0,661 1 26608868 . GGGACTGGGGCCGGGACCGGGACCGGGAC G 1762.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;CNN_1D=0.926;DP=85;ExcessHet=3.0103;FS=13.674;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-0.986;QD=23.18;ReadPosRankSum=1.238;SOR=0.270 GT:AD:DP:GQ:PL 0/1:28,48:76:99:1872,0,955 1 26609259 . C T 1345.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;CNN_1D=-4.071;DP=140;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=0.701;SOR=0.669 GT:AD:DP:GQ:PL 0/1:78,62:140:99:1353,0,1823 1 26610891 . A C 3553.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.951;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.65;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3567,372,0 1 26612042 . A G 2259.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.030;CNN_1D=2.776;DP=84;ExcessHet=3.0103;FS=2.198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.89;ReadPosRankSum=0.410;SOR=0.541 GT:AD:DP:GQ:PL 1/1:3,81:84:99:2273,163,0 1 26620806 . T C 337.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;CNN_1D=0.764;DP=38;ExcessHet=3.0103;FS=4.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-0.605;SOR=1.516 GT:AD:DP:GQ:PL 0/1:24,14:38:99:345,0,575 1 26627478 . T C 4683.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.132;CNN_1D=-0.938;DP=177;ExcessHet=3.0103;FS=6.195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.46;ReadPosRankSum=-0.347;SOR=0.208 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4697,463,0 1 26646726 . A G 6494.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.657;CNN_1D=0.398;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.98;ReadPosRankSum=0.248;SOR=0.852 GT:AD:DP:GQ:PL 1/1:2,147:149:99:6508,371,0 1 26646730 . A G 6519.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.007;CNN_1D=0.035;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.21;ReadPosRankSum=0.272;SOR=0.792 GT:AD:DP:GQ:PL 1/1:2,147:149:99:6533,374,0 1 26856462 . T G 2141.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.761;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.45;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2155,234,0 1 26879920 . T C 937.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.386;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.56;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,34:34:99:951,102,0 1 26883511 . A C 1194.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;CNN_1D=-2.822;DP=124;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.185;SOR=0.740 GT:AD:DP:GQ:PL 0/1:66,58:124:99:1202,0,1526 1 27210721 . T C 1469.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;CNN_1D=-3.798;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.805;SOR=0.686 GT:AD:DP:GQ:PL 0/1:67,73:140:99:1477,0,1382 1 27278521 . G A 1717.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346;CNN_1D=-1.550;DP=124;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.314;SOR=0.627 GT:AD:DP:GQ:PL 0/1:56,68:124:99:1725,0,1458 1 27278553 . G A 1858.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;CNN_1D=-2.885;DP=137;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=0.408;SOR=0.776 GT:AD:DP:GQ:PL 0/1:64,73:137:99:1866,0,1554 1 27320356 . T C 633.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.630;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.38;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,24:24:72:647,72,0 1 27426796 . T C 1258.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;CNN_1D=-1.435;DP=107;ExcessHet=3.0103;FS=3.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=0.581;SOR=1.096 GT:AD:DP:GQ:PL 0/1:57,50:107:99:1266,0,1365 1 27427041 . T C 2458.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;CNN_1D=-4.078;DP=168;ExcessHet=3.0103;FS=6.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=-0.392;SOR=0.365 GT:AD:DP:GQ:PL 0/1:69,99:168:99:2466,0,1635 1 27428321 . T C 696.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;CNN_1D=-0.063;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-2.745;SOR=0.702 GT:AD:DP:GQ:PL 0/1:35,33:68:99:704,0,780 1 27480757 . A G 2001.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;CNN_1D=-3.812;DP=154;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=0.170;SOR=0.779 GT:AD:DP:GQ:PL 0/1:72,82:154:99:2009,0,1733 1 27679797 . A G 1109.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;CNN_1D=0.474;DP=88;ExcessHet=3.0103;FS=4.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-0.008;SOR=0.460 GT:AD:DP:GQ:PL 0/1:39,49:88:99:1117,0,796 1 27680292 . A G 647.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.026;CNN_1D=-3.610;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=0.140;SOR=0.669 GT:AD:DP:GQ:PL 0/1:81,32:113:99:655,0,1850 1 27687466 . G T 933.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;CNN_1D=-0.818;DP=100;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.683;SOR=0.572 GT:AD:DP:GQ:PL 0/1:60,40:100:99:941,0,1666 1 27875824 . C T 3793.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.448;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.74;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3807,395,0 1 27876482 . C A 4363.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.516;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.16;SOR=0.910 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4377,419,0 1 27948132 . G A 1043.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;CNN_1D=-0.935;DP=103;ExcessHet=3.0103;FS=3.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=2.720;SOR=0.488 GT:AD:DP:GQ:PL 0/1:52,51:103:99:1051,0,1065 1 28209305 . A G 1644.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.599;CNN_1D=-2.335;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=1.143;SOR=0.676 GT:AD:DP:GQ:PL 0/1:68,63:131:99:1652,0,1680 1 28209362 . T C 3505.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;CNN_1D=-2.787;DP=166;ExcessHet=3.0103;FS=7.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.12;ReadPosRankSum=1.385;SOR=0.774 GT:AD:DP:GQ:PL 0/1:78,88:166:99:3513,0,3436 1 28209366 . A G 3537.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.533;CNN_1D=-2.663;DP=172;ExcessHet=3.0103;FS=9.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.57;ReadPosRankSum=1.002;SOR=0.865 GT:AD:DP:GQ:PL 0/1:79,93:172:99:3545,0,3433 1 28555426 . G A 975.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;CNN_1D=0.306;DP=80;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-2.047;SOR=0.843 GT:AD:DP:GQ:PL 0/1:36,44:80:99:983,0,730 1 28564279 . A G 1090.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;CNN_1D=-1.862;DP=113;ExcessHet=3.0103;FS=3.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=1.996;SOR=1.025 GT:AD:DP:GQ:PL 0/1:59,54:113:99:1098,0,1378 1 28800380 . C A 2376.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;CNN_1D=-5.531;DP=179;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-0.912;SOR=0.614 GT:AD:DP:GQ:PL 0/1:82,97:179:99:2384,0,1960 1 28861636 . G A 843.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;CNN_1D=0.086;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-1.002;SOR=0.698 GT:AD:DP:GQ:PL 0/1:38,36:74:99:851,0,937 1 29138975 . G T 1784.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.987;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.30;SOR=1.692 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1798,171,0 1 29447699 . G A 1478.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242;CNN_1D=-5.200;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=0.167;SOR=0.729 GT:AD:DP:GQ:PL 0/1:97,66:163:99:1486,0,2588 1 29475341 . C T 2108.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.395;CNN_1D=-3.843;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=2.951;SOR=0.650 GT:AD:DP:GQ:PL 0/1:65,93:158:99:2116,0,1472 1 29475394 . C G 1899.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;CNN_1D=-4.633;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.147;SOR=0.740 GT:AD:DP:GQ:PL 0/1:72,86:158:99:1907,0,1588 1 29475648 . T G 3719.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;CNN_1D=0.956;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.96;ReadPosRankSum=-0.117;SOR=0.357 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3733,360,0 1 29529699 . T C 3489.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.247;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.69;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3503,378,0 1 29542637 . A G 2391.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.775;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.80;SOR=0.740 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2405,257,0 1 29542655 . G A 980.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.061;CNN_1D=1.015;DP=73;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=-1.856;SOR=0.618 GT:AD:DP:GQ:PL 0/1:28,45:73:99:988,0,624 1 29631909 . A G 2315.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;CNN_1D=-7.013;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-1.309;SOR=0.674 GT:AD:DP:GQ:PL 0/1:99,104:203:99:2323,0,2152 1 31346199 . G A 676.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;CNN_1D=-1.460;DP=76;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=0.707;SOR=0.969 GT:AD:DP:GQ:PL 0/1:43,31:74:99:684,0,1020 1 31349642 . C T 2625.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.433;CNN_1D=-1.871;DP=147;ExcessHet=3.0103;FS=2.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=-0.877;SOR=0.467 GT:AD:DP:GQ:PL 0/1:78,69:147:99:2633,0,4500 1 31349647 . C T 2637.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;CNN_1D=-2.281;DP=150;ExcessHet=3.0103;FS=6.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.58;ReadPosRankSum=-1.183;SOR=0.379 GT:AD:DP:GQ:PL 0/1:80,70:150:99:2645,0,4505 1 31351513 . G A 3376.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.496;CNN_1D=2.147;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.90;ReadPosRankSum=-0.825;SOR=0.411 GT:AD:DP:GQ:PL 1/1:3,118:121:99:3390,280,0 1 31426815 . A G 837.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;CNN_1D=2.938;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.45;ReadPosRankSum=0.022;SOR=0.739 GT:AD:DP:GQ:PL 0/1:15,33:48:99:845,0,318 1 31898234 . T C 3449.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068;CNN_1D=2.119;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.23;ReadPosRankSum=-0.778;SOR=0.292 GT:AD:DP:GQ:PL 1/1:1,117:118:99:3463,314,0 1 31905889 . A ACAG 4913.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;CNN_1D=1.453;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.67;ReadPosRankSum=2.893;SOR=0.580 GT:AD:DP:GQ:PL 0/1:12,118:130:99:4921,0,180 1 32084904 . C T 3362.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.961;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.56;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3376,365,0 1 32092525 . A G 3833.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.363;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.99;SOR=0.750 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3847,425,0 1 32096265 . A G 3524.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.989;CNN_1D=2.320;DP=120;ExcessHet=3.0103;FS=3.158;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.37;ReadPosRankSum=-1.588;SOR=0.358 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3538,320,0 1 32148571 . A G 4714.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.396;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.23;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4728,501,0 1 32158374 . T C 4582.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.027;CNN_1D=-1.062;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.94;ReadPosRankSum=1.206;SOR=0.879 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4596,443,0 1 32164206 . T G 3260.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.431;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.10;SOR=1.093 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3274,348,0 1 32165495 . G T 5977.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;CNN_1D=-3.123;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.46;ReadPosRankSum=0.133;SOR=0.815 GT:AD:DP:GQ:PL 1/1:4,206:210:99:5991,531,0 1 32193647 . T C 5986.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.519;CNN_1D=-3.043;DP=210;ExcessHet=3.0103;FS=2.964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.50;ReadPosRankSum=-0.421;SOR=0.162 GT:AD:DP:GQ:PL 1/1:2,208:210:99:6000,555,0 1 32381592 . T TA 53.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;CNN_1D=-1.390;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-1.447;SOR=0.569 GT:AD:DP:GQ:PL 0/1:34,8:42:61:61,0,651 1 33065947 . G C 3577.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.115;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.06;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3591,357,0 1 33133968 . T C 2242.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.264;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.21;QD=28.03;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2256,240,0 1 33160878 . C T 4005.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.967;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.61;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4019,420,0 1 33161212 . T C 5350.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.747;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.46;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5364,564,0 1 33231380 . T G 1255.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.677;CNN_1D=-1.831;DP=114;ExcessHet=3.0103;FS=4.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=0.358;SOR=0.851 GT:AD:DP:GQ:PL 0/1:62,52:114:99:1263,0,1370 1 33231403 . G T 1218.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;CNN_1D=-2.054;DP=117;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=1.284;SOR=0.938 GT:AD:DP:GQ:PL 0/1:64,53:117:99:1226,0,1401 1 33409693 . G A 1011.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;CNN_1D=-0.093;DP=90;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.828;SOR=0.743 GT:AD:DP:GQ:PL 0/1:44,46:90:99:1019,0,945 1 33430102 . T G 81.80 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.794;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=27.27;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:95,9,0 1 33478834 . A G 128.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;CNN_1D=-15.258;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-12.067;QD=0.87;ReadPosRankSum=-2.272;SOR=0.795 GT:AD:DP:GQ:PL 0/1:135,12:147:99:136,0,3464 1 33478854 . G A 292.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;CNN_1D=-15.691;DP=176;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-13.190;QD=1.66;ReadPosRankSum=-1.396;SOR=0.573 GT:AD:DP:GQ:PL 0/1:154,22:176:99:300,0,3755 1 33478872 . G A 482.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870;CNN_1D=-15.874;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-13.338;QD=2.68;ReadPosRankSum=1.121;SOR=0.765 GT:AD:DP:GQ:PL 0/1:157,23:180:99:490,0,6676 1 33478878 . G A 476.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.733;CNN_1D=-15.884;DP=181;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-13.376;QD=2.63;ReadPosRankSum=1.781;SOR=0.754 GT:AD:DP:GQ:PL 0/1:158,23:181:99:484,0,6771 1 33478888 . C T 464.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.802;CNN_1D=-15.946;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-13.451;QD=2.54;ReadPosRankSum=3.249;SOR=0.776 GT:AD:DP:GQ:PL 0/1:160,23:183:99:472,0,6767 1 33478900 . T A 354.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;CNN_1D=-15.786;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-12.429;QD=1.88;ReadPosRankSum=3.141;SOR=0.657 GT:AD:DP:GQ:PL 0/1:163,26:189:99:362,0,3910 1 33478920 . G A 359.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;CNN_1D=-16.015;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-12.360;QD=1.92;ReadPosRankSum=2.111;SOR=0.681 GT:AD:DP:GQ:PL 0/1:161,26:187:99:367,0,4049 1 33478931 . G C 346.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;CNN_1D=-15.966;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-12.498;QD=1.81;ReadPosRankSum=1.354;SOR=0.681 GT:AD:DP:GQ:PL 0/1:165,26:191:99:354,0,4171 1 33646950 . A G 2760.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.125;CNN_1D=3.217;DP=94;ExcessHet=3.0103;FS=3.557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.68;ReadPosRankSum=0.727;SOR=0.653 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2774,240,0 1 33760743 . T C 3728.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.315;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.07;SOR=0.910 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3742,360,0 1 33832865 . A G 1781.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;CNN_1D=-3.838;DP=153;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.225;SOR=0.767 GT:AD:DP:GQ:PL 0/1:74,79:153:99:1789,0,1685 1 33956890 . T C 1830.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;CNN_1D=-5.403;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.289;SOR=0.662 GT:AD:DP:GQ:PL 0/1:88,80:168:99:1838,0,2148 1 33957152 . T G 4543.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.783;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.75;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4557,473,0 1 34038214 . T C 1699.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.151;CNN_1D=2.549;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=23.93;ReadPosRankSum=-2.008;SOR=1.066 GT:AD:DP:GQ:PL 1/1:4,67:71:99:1713,114,0 1 34189917 . C T 2339.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.693;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.85;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2353,251,0 1 34238283 . T C 4165.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.780;CNN_1D=-0.055;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.05;ReadPosRankSum=-1.418;SOR=0.287 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4179,423,0 1 34286166 . C CA,CAA 136.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.451;CNN_1D=-3.684;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=0.291;SOR=2.147 GT:AD:DP:GQ:PL 1/2:2,5,6:13:44:153,50,63,44,0,66 1 34329897 . T C 4315.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.097;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.16;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4329,444,0 1 34330067 . A C 2717.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.288;CNN_1D=-8.148;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=-0.736;SOR=0.717 GT:AD:DP:GQ:PL 0/1:117,110:227:99:2725,0,2804 1 35259946 . G A 1317.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;CNN_1D=-4.217;DP=140;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.889;SOR=0.911 GT:AD:DP:GQ:PL 0/1:79,61:140:99:1325,0,1937 1 35259961 . A G 1420.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.238;CNN_1D=-3.744;DP=133;ExcessHet=3.0103;FS=4.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-0.007;SOR=1.034 GT:AD:DP:GQ:PL 0/1:74,59:133:99:1428,0,1709 1 35260769 . C T 2066.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750;CNN_1D=-6.507;DP=192;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.071;SOR=0.545 GT:AD:DP:GQ:PL 0/1:94,98:192:99:2074,0,2145 1 35562965 . G A 2795.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.822;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.42;SOR=1.354 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2809,285,0 1 36316571 . A C 3775.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.101;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.40;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3789,428,0 1 36553673 . A G 2544.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.842;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.58;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2558,267,0 1 36642420 . T C 3521.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;CNN_1D=-1.721;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.33;ReadPosRankSum=-0.422;SOR=0.937 GT:AD:DP:GQ:PL 1/1:4,135:139:99:3535,318,0 1 36752433 . C T 5017.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.552;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.98;QD=29.17;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5031,516,0 1 36773405 . T G 3933.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.864;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.50;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3947,414,0 1 36773819 . C G 1806.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.271;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.61;SOR=0.950 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1820,177,0 1 36775154 . G A 904.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;CNN_1D=1.194;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=0.483;SOR=0.585 GT:AD:DP:GQ:PL 0/1:27,41:68:99:912,0,567 1 36785270 . C T 1800.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;CNN_1D=-4.798;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=1.053;SOR=0.645 GT:AD:DP:GQ:PL 0/1:85,75:160:99:1808,0,2160 1 36807481 . C T 2256.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.859;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.51;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2270,245,0 1 36927733 . G A 2113.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.565;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.76;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2127,213,0 1 36937059 . A G 2139.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;CNN_1D=0.639;DP=107;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.00;ReadPosRankSum=1.456;SOR=0.871 GT:AD:DP:GQ:PL 0/1:52,55:107:99:2147,0,2634 1 36937065 . A G 2167.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.864;CNN_1D=-0.137;DP=112;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.35;ReadPosRankSum=2.294;SOR=0.850 GT:AD:DP:GQ:PL 0/1:56,56:112:99:2175,0,2669 1 37948912 . C T 1710.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;CNN_1D=-4.966;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=1.691;SOR=0.709 GT:AD:DP:GQ:PL 0/1:91,73:164:99:1718,0,2132 1 38006359 . A G 465.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;CNN_1D=1.272;DP=52;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.550;SOR=0.377 GT:AD:DP:GQ:PL 0/1:31,21:52:99:473,0,828 1 38019747 . C T 1266.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;CNN_1D=-3.543;DP=117;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=1.066;SOR=0.795 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1274,0,1327 1 38327982 . G T 2056.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.737;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.70;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2070,230,0 1 38329999 . C G 620.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;CNN_1D=1.853;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.105;SOR=0.784 GT:AD:DP:GQ:PL 0/1:32,25:57:99:628,0,800 1 38338795 . A G 2997.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.052;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.82;SOR=1.043 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3011,312,0 1 38348506 . G A 1838.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;CNN_1D=-4.216;DP=156;ExcessHet=3.0103;FS=1.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.545;SOR=0.543 GT:AD:DP:GQ:PL 0/1:73,83:156:99:1846,0,1506 1 38397341 . G A 3267.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.143;CNN_1D=1.197;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=-1.525;SOR=0.479 GT:AD:DP:GQ:PL 1/1:3,122:125:99:3281,277,0 1 38397369 . C T 3637.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.984;CNN_1D=0.851;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.41;ReadPosRankSum=0.039;SOR=0.513 GT:AD:DP:GQ:PL 1/1:3,125:128:99:3651,277,0 1 38411445 . G A 1115.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;CNN_1D=-0.495;DP=91;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.560;SOR=0.639 GT:AD:DP:GQ:PL 0/1:38,53:91:99:1123,0,750 1 38423853 . G C 3633.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.922;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.95;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3647,389,0 1 38442547 . G A 2258.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.952;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.54;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2272,246,0 1 38449910 . T C 1404.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;CNN_1D=-2.933;DP=124;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=0.802;SOR=0.681 GT:AD:DP:GQ:PL 0/1:60,63:123:99:1412,0,1274 1 38463504 . C T 1697.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;CNN_1D=-1.484;DP=127;ExcessHet=3.0103;FS=3.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=-1.404;SOR=0.730 GT:AD:DP:GQ:PL 0/1:56,71:127:99:1705,0,1223 1 38464639 . C G 2394.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.098;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.84;SOR=1.320 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2408,249,0 1 39340862 . A G 3539.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.982;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.99;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3553,354,0 1 39748921 . G A 3500.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.199;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.69;SOR=0.760 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3514,366,0 1 39893638 . G A 902.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;CNN_1D=-1.298;DP=94;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=0.838;SOR=0.838 GT:AD:DP:GQ:PL 0/1:54,40:94:99:910,0,1355 1 39914363 . G C 1774.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;CNN_1D=-5.006;DP=168;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-0.924;SOR=0.772 GT:AD:DP:GQ:PL 0/1:85,82:167:99:1782,0,1826 1 39924765 . C A 758.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;CNN_1D=-0.760;DP=80;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=1.014;SOR=0.843 GT:AD:DP:GQ:PL 0/1:43,37:80:99:766,0,975 1 39957669 . C G 276.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;CNN_1D=2.067;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.354;SOR=0.836 GT:AD:DP:GQ:PL 0/1:12,13:25:99:284,0,291 1 39957913 . A G 599.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;CNN_1D=0.503;DP=64;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-0.365;QD=9.37;ReadPosRankSum=2.065;SOR=0.425 GT:AD:DP:GQ:PL 0/1:36,28:64:99:607,0,840 1 39977575 . C T 336.70 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.885;CNN_1D=-3.575;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=27.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=-1.336;SOR=3.767 GT:AD:DP:GQ:PL 1/1:1,12:13:7:349,7,0 1 39988084 . G A 356.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;CNN_1D=-8.537;DP=61;ExcessHet=3.0103;FS=16.906;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-7.611;QD=5.85;ReadPosRankSum=-1.730;SOR=2.702 GT:AD:DP:GQ:PL 0/1:44,17:61:99:364,0,1093 1 40098328 . T C 3072.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.641;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.18;SOR=0.956 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3086,327,0 1 40149642 . G T 2690.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.178;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.92;SOR=1.286 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2704,261,0 1 40150156 . G A 990.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;CNN_1D=-1.929;DP=113;ExcessHet=3.0103;FS=3.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.346;SOR=0.751 GT:AD:DP:GQ:PL 0/1:65,48:113:99:998,0,1483 1 40229368 . A G 1997.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.728;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=46.31;QD=31.20;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2011,191,0 1 40230336 . C G 2444.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;CNN_1D=-12.313;DP=215;ExcessHet=3.0103;FS=4.674;MLEAC=1;MLEAF=0.500;MQ=44.25;MQRankSum=-2.392;QD=11.37;ReadPosRankSum=0.403;SOR=0.815 GT:AD:DP:GQ:PL 0/1:105,110:215:99:2452,0,2111 1 40349131 . G A 622.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;CNN_1D=0.890;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=0.149;SOR=0.593 GT:AD:DP:GQ:PL 0/1:36,28:64:99:630,0,800 1 40363054 . G C 1452.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;CNN_1D=-3.153;DP=133;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.025;SOR=0.723 GT:AD:DP:GQ:PL 0/1:73,60:133:99:1460,0,1788 1 40533266 . T G 3338.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.342;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.54;SOR=2.247 GT:AD:DP:GQ:PL 1/1:0,84:84:99:3352,256,0 1 40533287 . T G 3546.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.001;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.07;QD=29.33;SOR=2.252 GT:AD:DP:GQ:PL 1/1:0,92:92:99:3560,277,0 1 40533315 . T G 4171.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.181;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.07;QD=32.58;SOR=1.485 GT:AD:DP:GQ:PL 1/1:0,92:92:99:4185,283,0 1 40533320 . T G 4486.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.029;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.10;QD=25.49;SOR=1.354 GT:AD:DP:GQ:PL 1/1:0,95:95:99:4500,304,0 1 40533326 . T G 4389.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.516;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.13;QD=24.02;SOR=1.237 GT:AD:DP:GQ:PL 1/1:0,98:98:99:4403,295,0 1 40533347 . T G 4478.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.247;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.19;QD=26.80;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,105:105:99:4492,316,0 1 40768344 . C T 768.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;CNN_1D=-0.221;DP=79;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-0.988;SOR=0.589 GT:AD:DP:GQ:PL 0/1:42,37:79:99:776,0,932 1 40768483 . T TGGAG 96.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;CNN_1D=-0.544;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-1.687;SOR=0.223 GT:AD:DP:GQ:PL 0/1:7,3:10:99:104,0,365 1 40770456 . A T 410.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;CNN_1D=0.024;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=0.379;SOR=0.615 GT:AD:DP:GQ:PL 0/1:41,21:62:99:418,0,1028 1 40773149 . T C 995.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;CNN_1D=0.263;DP=81;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=0.753;SOR=0.836 GT:AD:DP:GQ:PL 0/1:38,43:81:99:1003,0,800 1 40773175 . G C 923.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;CNN_1D=0.720;DP=77;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-0.307;SOR=0.967 GT:AD:DP:GQ:PL 0/1:35,42:77:99:931,0,812 1 40881041 . C G 2734.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.836;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.34;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2748,298,0 1 41204569 . C T 2565.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.063;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.19;SOR=0.760 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2579,273,0 1 41285087 . T C 4799.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.879;CNN_1D=-2.613;DP=183;ExcessHet=3.0103;FS=1.487;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.22;ReadPosRankSum=-1.579;SOR=0.638 GT:AD:DP:GQ:PL 1/1:7,176:183:99:4813,361,0 1 41976328 . T C 3293.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.444;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.21;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3307,327,0 1 41978566 . T G 3745.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.348;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.70;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3759,366,0 1 41978825 . C G 5009.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.202;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.36;SOR=0.730 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5023,495,0 1 41979156 . A G 3526.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.204;CNN_1D=2.115;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.66;ReadPosRankSum=0.974;SOR=1.035 GT:AD:DP:GQ:PL 1/1:2,113:115:99:3540,295,0 1 42046812 . C T 7863.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-7.572;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.49;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,276:276:99:7877,824,0 1 42048745 . T C 5407.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.470;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.73;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5421,583,0 1 42049032 . G A 3979.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.156;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.47;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3993,404,0 1 42049140 . C G 4114.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.467;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.93;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4128,399,0 1 42050366 . C T 1853.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;CNN_1D=-4.057;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=0.007;SOR=0.662 GT:AD:DP:GQ:PL 0/1:75,78:153:99:1861,0,1574 1 42619152 . C A 855.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;CNN_1D=0.120;DP=75;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-0.832;SOR=0.779 GT:AD:DP:GQ:PL 0/1:38,37:75:99:863,0,936 1 42630364 . G A 1975.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;CNN_1D=-1.895;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=0.222;SOR=0.661 GT:AD:DP:GQ:PL 0/1:55,82:137:99:1983,0,1312 1 42898843 . A G 1605.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.213;CNN_1D=-4.201;DP=137;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=-1.581;SOR=0.760 GT:AD:DP:GQ:PL 0/1:69,67:136:99:1613,0,1514 1 42915727 . C G 1407.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;CNN_1D=-0.491;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=-0.664;SOR=0.635 GT:AD:DP:GQ:PL 0/1:42,63:105:99:1415,0,908 1 43042703 . C T 1133.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;CNN_1D=-1.914;DP=112;ExcessHet=3.0103;FS=4.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.719;SOR=0.385 GT:AD:DP:GQ:PL 0/1:57,55:112:99:1141,0,1328 1 43047057 . A G 563.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;CNN_1D=0.475;DP=66;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-0.630;SOR=0.305 GT:AD:DP:GQ:PL 0/1:40,26:66:99:571,0,1070 1 43108188 . G A 1416.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;CNN_1D=-4.592;DP=161;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.378;SOR=0.809 GT:AD:DP:GQ:PL 0/1:95,66:161:99:1424,0,2264 1 43131653 . G A 837.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;CNN_1D=-1.524;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.439;SOR=0.645 GT:AD:DP:GQ:PL 0/1:50,42:92:99:845,0,1058 1 43212431 . A G 5530.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.145;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.05;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5544,552,0 1 43296118 . G A 1232.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;CNN_1D=-2.667;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=1.927;SOR=0.670 GT:AD:DP:GQ:PL 0/1:64,59:123:99:1240,0,1454 1 43296195 . C T 1282.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.007;CNN_1D=-1.998;DP=115;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=0.845;SOR=0.540 GT:AD:DP:GQ:PL 0/1:58,57:115:99:1290,0,1214 1 43395635 . C T 1192.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;CNN_1D=-1.396;DP=112;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=3.537;SOR=0.712 GT:AD:DP:GQ:PL 0/1:60,52:112:99:1200,0,1390 1 43396414 . G A 1901.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;CNN_1D=-2.711;DP=149;ExcessHet=3.0103;FS=4.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=1.208;SOR=0.464 GT:AD:DP:GQ:PL 0/1:64,85:149:99:1909,0,1377 1 43408966 . G A 1738.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;CNN_1D=-5.610;DP=173;ExcessHet=3.0103;FS=8.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=0.433;SOR=0.880 GT:AD:DP:GQ:PL 0/1:93,79:172:99:1746,0,2038 1 43618596 . G A 2389.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;CNN_1D=-7.508;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-1.385;SOR=0.693 GT:AD:DP:GQ:PL 0/1:107,107:214:99:2397,0,2481 1 43632536 . C T 1131.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;CNN_1D=-2.851;DP=116;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=0.478;SOR=0.538 GT:AD:DP:GQ:PL 0/1:64,52:116:99:1139,0,1434 1 43636484 . C G 471.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;CNN_1D=0.578;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=1.427;SOR=0.635 GT:AD:DP:GQ:PL 0/1:39,21:60:99:479,0,843 1 43637549 . A G 945.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;CNN_1D=-2.673;DP=124;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=1.581;SOR=0.609 GT:AD:DP:GQ:PL 0/1:80,43:123:99:953,0,1991 1 43638457 . T A 619.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;CNN_1D=-0.074;DP=70;ExcessHet=3.0103;FS=3.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-0.091;SOR=0.407 GT:AD:DP:GQ:PL 0/1:39,30:69:99:627,0,915 1 43649393 . T C 1594.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;CNN_1D=-3.606;DP=147;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=0.210;SOR=0.507 GT:AD:DP:GQ:PL 0/1:75,71:146:99:1602,0,1729 1 43649508 . A G 3103.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.297;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3117,317,0 1 43652369 . T C 1669.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.243;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.92;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1683,185,0 1 43664218 . C T 1662.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;CNN_1D=-4.025;DP=144;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=0.660;SOR=0.812 GT:AD:DP:GQ:PL 0/1:73,71:144:99:1670,0,1647 1 43664319 . TA T 1022.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;CNN_1D=0.179;DP=81;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-1.786;SOR=1.032 GT:AD:DP:GQ:PL 0/1:29,44:73:99:1030,0,549 1 43675467 . G A 1182.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;CNN_1D=-1.982;DP=112;ExcessHet=3.0103;FS=1.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.689;SOR=0.890 GT:AD:DP:GQ:PL 0/1:60,52:112:99:1190,0,1415 1 43784956 . A G 2625.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.012;CNN_1D=2.845;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.85;ReadPosRankSum=-0.163;SOR=1.022 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2639,224,0 1 43825644 . T C 2616.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.568;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.78;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2630,255,0 1 43886494 . C T 6629.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.481;CNN_1D=-4.975;DP=234;ExcessHet=3.0103;FS=1.851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.45;ReadPosRankSum=-0.315;SOR=0.893 GT:AD:DP:GQ:PL 1/1:5,228:233:99:6643,560,0 1 43906896 . A G 3319.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.546;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.17;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3333,330,0 1 43909265 . T C 3050.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;CNN_1D=2.305;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.61;ReadPosRankSum=0.559;SOR=0.419 GT:AD:DP:GQ:PL 1/1:3,100:103:99:3064,222,0 1 43917637 . G A 3388.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.426;CNN_1D=1.621;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.00;ReadPosRankSum=0.534;SOR=0.537 GT:AD:DP:GQ:PL 1/1:3,118:121:99:3402,283,0 1 43919413 . A G 1172.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.345;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.05;SOR=0.850 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1186,117,0 1 44087628 . G A 1099.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;CNN_1D=-0.832;DP=103;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.036;SOR=0.470 GT:AD:DP:GQ:PL 0/1:53,50:103:99:1107,0,1224 1 44401384 . A G 3120.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.971;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.36;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3134,330,0 1 44415415 . C T 6256.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.910;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.23;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6270,640,0 1 44422622 . C T 3022.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.039;CNN_1D=2.506;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.98;ReadPosRankSum=0.820;SOR=0.314 GT:AD:DP:GQ:PL 1/1:1,111:112:99:3036,303,0 1 44596379 . CCAA C 4292.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.712;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.17;SOR=1.313 GT:AD:DP:GQ:PL 1/1:0,96:96:99:4306,290,0 1 45504720 . G C 2924.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.900;CNN_1D=2.175;DP=116;ExcessHet=3.0103;FS=2.110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=1.027;SOR=0.441 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2938,257,0 1 46032311 . A G 1719.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;CNN_1D=0.576;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.37;ReadPosRankSum=-2.038;SOR=0.704 GT:AD:DP:GQ:PL 0/1:29,70:99:99:1727,0,588 1 46078854 . A G 1668.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.698;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.90;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1682,185,0 1 46078884 . C T 2394.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.719;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.52;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2408,261,0 1 46086077 . C T 3182.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.174;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.67;SOR=0.710 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3196,344,0 1 46087577 . G A 2367.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.740;CNN_1D=2.490;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=0.734;SOR=0.763 GT:AD:DP:GQ:PL 1/1:2,87:89:99:2381,215,0 1 46089225 . C G 3136.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.161;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.01;SOR=1.167 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3150,285,0 1 46496709 . A G 2438.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.246;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=0.740 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2452,258,0 1 46498375 . A G 2023.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.024;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.49;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2037,213,0 1 46500613 . T C 6199.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.386;CNN_1D=-2.924;DP=217;ExcessHet=3.0103;FS=6.059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.83;ReadPosRankSum=-0.276;SOR=0.068 GT:AD:DP:GQ:PL 1/1:3,212:215:99:6213,554,0 1 46501359 . A G 1600.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730;CNN_1D=-3.332;DP=138;ExcessHet=3.0103;FS=4.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-1.366;SOR=0.476 GT:AD:DP:GQ:PL 0/1:66,71:137:99:1608,0,1728 1 46521517 . G A 4395.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.015;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.13;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4409,485,0 1 46521559 . A T 3753.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.506;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.39;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3767,410,0 1 46655158 . T C 3148.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.344;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.27;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3162,312,0 1 46660295 . T C 2155.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;CNN_1D=-5.615;DP=172;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-1.824;SOR=0.547 GT:AD:DP:GQ:PL 0/1:78,94:172:99:2163,0,1652 1 46714074 . C G 606.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;CNN_1D=-0.964;DP=86;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=1.030;SOR=0.585 GT:AD:DP:GQ:PL 0/1:55,31:86:99:614,0,1334 1 46806550 . C T 1085.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;CNN_1D=-3.624;DP=127;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.699;SOR=0.681 GT:AD:DP:GQ:PL 0/1:74,53:127:99:1093,0,1661 1 46810530 . A G 1491.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;CNN_1D=-4.665;DP=153;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=0.993;SOR=0.899 GT:AD:DP:GQ:PL 0/1:89,64:153:99:1499,0,2316 1 46810670 . T C 2528.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;CNN_1D=-5.136;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-0.482;SOR=0.737 GT:AD:DP:GQ:PL 0/1:74,101:175:99:2536,0,1683 1 46827485 . C T 1047.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;CNN_1D=-2.606;DP=113;ExcessHet=3.0103;FS=6.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.915;SOR=1.298 GT:AD:DP:GQ:PL 0/1:64,48:112:99:1055,0,1574 1 46870761 . C A 1441.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;CNN_1D=-3.258;DP=128;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=0.181;SOR=0.591 GT:AD:DP:GQ:PL 0/1:65,63:128:99:1449,0,1401 1 46871746 . G A 1328.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;CNN_1D=-1.139;DP=102;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=1.613;SOR=0.884 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1336,0,1030 1 46871986 . T C 4592.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.366;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.00;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4606,491,0 1 47016761 . C T 557.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;CNN_1D=-0.005;DP=59;ExcessHet=3.0103;FS=3.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.191;SOR=0.911 GT:AD:DP:GQ:PL 0/1:33,26:59:99:565,0,721 1 47078637 . T C 3717.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.929;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.04;SOR=1.010 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3731,384,0 1 47080665 . C T 1057.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;CNN_1D=-0.665;DP=96;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.983;SOR=0.976 GT:AD:DP:GQ:PL 0/1:50,46:96:99:1065,0,1161 1 47080679 . G A 3318.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.560;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.11;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3332,342,0 1 47080741 . C T 1176.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;CNN_1D=-1.969;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-1.462;SOR=0.722 GT:AD:DP:GQ:PL 0/1:50,53:103:99:1184,0,1066 1 47133811 . T C 293.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;CNN_1D=2.153;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-0.657;SOR=0.527 GT:AD:DP:GQ:PL 0/1:13,14:27:99:301,0,267 1 47138819 . T G 1805.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;CNN_1D=-3.434;DP=148;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-0.294;SOR=0.557 GT:AD:DP:GQ:PL 0/1:77,71:148:99:1813,0,1878 1 47139103 . C T 1058.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;CNN_1D=-1.945;DP=99;ExcessHet=3.0103;FS=2.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-1.147;SOR=1.056 GT:AD:DP:GQ:PL 0/1:57,42:99:99:1066,0,1396 1 47280746 . GAT G 1566.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;CNN_1D=-3.654;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=1.098;SOR=0.711 GT:AD:DP:GQ:PL 0/1:73,43:116:99:1574,0,3294 1 47280859 . G A 941.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;CNN_1D=-6.412;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=1.040;SOR=0.694 GT:AD:DP:GQ:PL 0/1:114,53:167:99:949,0,2650 1 47280884 . C T 986.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;CNN_1D=-5.793;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=1.934;SOR=0.649 GT:AD:DP:GQ:PL 0/1:104,53:157:99:994,0,2374 1 47282772 . C T 1210.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;CNN_1D=-1.768;DP=109;ExcessHet=3.0103;FS=2.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.406;SOR=0.761 GT:AD:DP:GQ:PL 0/1:55,54:109:99:1218,0,1182 1 47395973 . G A 4001.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.259;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.94;QD=28.38;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4015,423,0 1 47571943 . C CT 147.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;CNN_1D=-2.104;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-1.548;SOR=0.751 GT:AD:DP:GQ:PL 0/1:51,17:68:99:155,0,875 1 47607851 . A T 1220.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;CNN_1D=-7.638;DP=117;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-6.977;QD=10.43;ReadPosRankSum=0.813;SOR=0.738 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1228,0,1198 1 47685455 . T C 2874.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.880;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.29;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2888,266,0 1 47691568 . GCAGA G 1075.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;CNN_1D=1.055;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.23;ReadPosRankSum=0.934;SOR=0.693 GT:AD:DP:GQ:PL 0/1:31,28:59:99:1083,0,1627 1 47717189 . A G 2274.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;CNN_1D=-4.659;DP=177;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=1.723;SOR=0.670 GT:AD:DP:GQ:PL 0/1:83,94:177:99:2282,0,1947 1 47726087 . T C 1010.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;CNN_1D=-1.802;DP=101;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.778;SOR=0.739 GT:AD:DP:GQ:PL 0/1:51,50:101:99:1018,0,1023 1 47767914 . G A 389.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;CNN_1D=0.228;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-0.746;SOR=0.776 GT:AD:DP:GQ:PL 0/1:31,21:52:99:397,0,676 1 47799639 . G C 662.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;CNN_1D=0.372;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=1.966;SOR=0.711 GT:AD:DP:GQ:PL 0/1:40,31:71:99:670,0,840 1 47882497 . C T 1315.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.127;CNN_1D=0.781;DP=91;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=-0.199;SOR=0.511 GT:AD:DP:GQ:PL 0/1:42,49:91:99:1323,0,902 1 47904668 . T TCCGCAC 2489.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.580;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.69;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2503,176,0 1 47904909 . G C 1265.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.852;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.85;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1279,123,0 1 48459907 . C T 2040.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;CNN_1D=-3.791;DP=155;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-1.142;SOR=0.565 GT:AD:DP:GQ:PL 0/1:71,84:155:99:2048,0,1609 1 48697733 . T G 3237.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.364;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.25;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3251,320,0 1 48764419 . C T 1161.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;CNN_1D=-1.833;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=1.832;SOR=0.732 GT:AD:DP:GQ:PL 0/1:56,55:111:99:1169,0,1194 1 48865121 . C T 1000.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;CNN_1D=-2.106;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-2.634;SOR=0.640 GT:AD:DP:GQ:PL 0/1:61,47:108:99:1008,0,1427 1 49224584 . G T 3315.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.036;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.08;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3329,342,0 1 50661411 . C T 3936.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.103;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.72;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3950,425,0 1 50666515 . C T 2909.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.956;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.80;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2923,303,0 1 50884778 . G A 2231.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.850;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.79;QD=28.60;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2245,234,0 1 51767352 . G A 1391.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;CNN_1D=-2.563;DP=125;ExcessHet=3.0103;FS=4.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=1.790;SOR=1.078 GT:AD:DP:GQ:PL 0/1:60,65:125:99:1399,0,1439 1 51873951 . G A 1236.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;CNN_1D=-1.540;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=0.518;SOR=0.685 GT:AD:DP:GQ:PL 0/1:55,57:112:99:1244,0,1172 1 52264064 . A G 1651.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;CNN_1D=-0.997;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=-0.795;SOR=0.633 GT:AD:DP:GQ:PL 0/1:50,71:121:99:1659,0,1092 1 52266242 . G A 1059.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;CNN_1D=-3.433;DP=128;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-1.373;SOR=0.869 GT:AD:DP:GQ:PL 0/1:74,54:128:99:1067,0,1616 1 52290984 . T G 702.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;CNN_1D=1.620;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=0.881;SOR=0.689 GT:AD:DP:GQ:PL 0/1:29,31:60:99:710,0,642 1 52306063 . ATCT A 2641.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;CNN_1D=-1.327;DP=132;ExcessHet=3.0103;FS=3.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.97;ReadPosRankSum=-2.121;SOR=0.415 GT:AD:DP:GQ:PL 0/1:45,70:115:99:2649,0,1818 1 52402956 . G A 1021.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.572;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.36;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1035,108,0 1 52827212 . TTCC T 136.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;CNN_1D=-4.081;DP=81;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=1.275;SOR=1.017 GT:AD:DP:GQ:PL 0/1:64,8:72:99:144,0,2752 1 52854961 . G A 1062.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;CNN_1D=-3.074;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=1.661;SOR=0.680 GT:AD:DP:GQ:PL 0/1:67,52:119:99:1070,0,1439 1 52878300 . T A 658.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;CNN_1D=-1.041;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-1.529;QD=9.15;ReadPosRankSum=-0.362;SOR=0.638 GT:AD:DP:GQ:PL 0/1:39,33:72:99:666,0,862 1 52912122 . T TA 744.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;CNN_1D=-0.197;DP=65;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-1.683;SOR=0.604 GT:AD:DP:GQ:PL 0/1:16,35:51:99:752,0,241 1 52991638 . C T 1448.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;CNN_1D=-2.461;DP=133;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.025;SOR=0.803 GT:AD:DP:GQ:PL 0/1:71,62:133:99:1456,0,1689 1 53072454 . T C 2185.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;CNN_1D=-6.874;DP=200;ExcessHet=3.0103;FS=3.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=0.840;SOR=0.491 GT:AD:DP:GQ:PL 0/1:104,96:200:99:2193,0,2294 1 53153432 . T C 2421.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;CNN_1D=-3.837;DP=165;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=1.862;SOR=0.528 GT:AD:DP:GQ:PL 0/1:60,103:163:99:2429,0,1286 1 53250650 . G A 1362.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;CNN_1D=-4.104;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-1.205;SOR=0.739 GT:AD:DP:GQ:PL 0/1:82,62:144:99:1370,0,1769 1 53320274 . G T 1721.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;CNN_1D=-3.399;DP=147;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-1.521;SOR=0.754 GT:AD:DP:GQ:PL 0/1:68,79:147:99:1729,0,1483 1 53535478 . G A 1030.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;CNN_1D=1.214;DP=77;ExcessHet=3.0103;FS=8.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-0.384;SOR=0.213 GT:AD:DP:GQ:PL 0/1:35,42:77:99:1038,0,834 1 53537266 . G A 2180.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;CNN_1D=-5.311;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=1.136;SOR=0.707 GT:AD:DP:GQ:PL 0/1:86,99:185:99:2188,0,1826 1 53544439 . G A 1912.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;CNN_1D=-3.169;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=1.805;SOR=0.689 GT:AD:DP:GQ:PL 0/1:69,81:150:99:1920,0,1525 1 53544578 . T C 1251.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;CNN_1D=-2.417;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=0.430;SOR=0.733 GT:AD:DP:GQ:PL 0/1:70,55:125:99:1259,0,1708 1 53544597 . T C 3336.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.213;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.57;SOR=1.052 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3350,363,0 1 53553702 . A G 2092.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.653;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.66;SOR=1.708 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2106,219,0 1 53553754 . T C 1099.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;CNN_1D=-2.956;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-1.507;SOR=0.741 GT:AD:DP:GQ:PL 0/1:60,55:115:99:1107,0,1357 1 53558270 . A G 1002.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.286;CNN_1D=-2.326;DP=122;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.289;SOR=0.618 GT:AD:DP:GQ:PL 0/1:75,47:122:99:1010,0,1649 1 53676448 . G A 1641.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;CNN_1D=-3.002;DP=143;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=-0.174;SOR=0.581 GT:AD:DP:GQ:PL 0/1:76,67:143:99:1649,0,1774 1 53712727 . C T 1022.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;CNN_1D=-2.354;DP=113;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-0.352;SOR=0.749 GT:AD:DP:GQ:PL 0/1:65,48:113:99:1030,0,1436 1 53716416 . G A 1141.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;CNN_1D=-1.786;DP=116;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.544;SOR=0.847 GT:AD:DP:GQ:PL 0/1:59,57:116:99:1149,0,1288 1 53732315 . G T 1413.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;CNN_1D=-1.223;DP=109;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=1.334;SOR=1.107 GT:AD:DP:GQ:PL 0/1:49,60:109:99:1421,0,1022 1 53742506 . A G 553.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;CNN_1D=0.659;DP=48;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-0.466;SOR=1.179 GT:AD:DP:GQ:PL 0/1:26,22:48:99:561,0,738 1 53792651 . A C 1347.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;CNN_1D=-3.584;DP=131;ExcessHet=3.0103;FS=2.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-0.422;SOR=0.917 GT:AD:DP:GQ:PL 0/1:73,58:131:99:1355,0,1639 1 53793452 . T C 635.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;CNN_1D=2.360;DP=42;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-0.545;SOR=0.409 GT:AD:DP:GQ:PL 0/1:13,29:42:99:643,0,263 1 53793511 . T C 800.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;CNN_1D=1.556;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=1.678;SOR=0.645 GT:AD:DP:GQ:PL 0/1:21,40:61:99:860,0,402 1 53990569 . T TG 519.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;CNN_1D=-4.510;DP=77;ExcessHet=3.0103;FS=10.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-1.845;SOR=1.776 GT:AD:DP:GQ:PL 0/1:46,24:70:99:527,0,1224 1 54060016 . G C 1199.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;CNN_1D=-1.865;DP=101;ExcessHet=3.0103;FS=5.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.175;SOR=0.342 GT:AD:DP:GQ:PL 0/1:57,44:101:99:1207,0,1546 1 54060248 . T C 1982.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.521;CNN_1D=-2.074;DP=144;ExcessHet=3.0103;FS=4.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=-0.676;SOR=0.404 GT:AD:DP:GQ:PL 0/1:70,74:144:99:1990,0,1776 1 54605318 . T TG,TGGG 4137.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.173;CNN_1D=-3.492;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.70;ReadPosRankSum=1.371;SOR=1.049 GT:AD:DP:GQ:PL 1/2:3,111,47:161:99:4154,1401,1049,2790,0,3857 1 54606804 . C T 1464.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;CNN_1D=-2.992;DP=124;ExcessHet=3.0103;FS=1.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=0.310;SOR=0.843 GT:AD:DP:GQ:PL 0/1:63,61:124:99:1472,0,1432 1 54607051 . A G 4067.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.441;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.05;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4081,420,0 1 54681920 . G C 4743.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.394;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.75;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4757,494,0 1 54690867 . G A 1925.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;CNN_1D=-5.011;DP=187;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-0.863;SOR=0.757 GT:AD:DP:GQ:PL 0/1:103,84:187:99:1933,0,2353 1 54690954 . T C 2352.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;CNN_1D=-5.904;DP=192;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=0.463;SOR=0.863 GT:AD:DP:GQ:PL 0/1:94,98:192:99:2360,0,2182 1 55060224 . G A 1313.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;CNN_1D=-2.839;DP=120;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.276;SOR=0.841 GT:AD:DP:GQ:PL 0/1:61,59:120:99:1321,0,1360 1 55060362 . G A 944.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;CNN_1D=-0.807;DP=85;ExcessHet=3.0103;FS=2.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.430;SOR=1.052 GT:AD:DP:GQ:PL 0/1:44,40:84:99:952,0,1086 1 55076113 . G A 1349.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;CNN_1D=-4.433;DP=148;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=1.337;SOR=0.738 GT:AD:DP:GQ:PL 0/1:82,66:148:99:1357,0,1829 1 55119515 . T G 4739.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.482;CNN_1D=-1.551;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.55;ReadPosRankSum=0.772;SOR=0.900 GT:AD:DP:GQ:PL 1/1:4,168:172:99:4753,391,0 1 55119546 . A G 5248.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.859;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.65;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5262,531,0 1 55136529 . T C 1220.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.064;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.11;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1234,135,0 1 55139741 . A G 3445.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.966;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.34;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3459,377,0 1 55148455 . C T 920.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;CNN_1D=-0.198;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.849;SOR=0.627 GT:AD:DP:GQ:PL 0/1:38,41:79:99:928,0,800 1 55167773 . T A 1140.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;CNN_1D=-2.705;DP=119;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=0.288;SOR=0.827 GT:AD:DP:GQ:PL 0/1:65,54:119:99:1148,0,1461 1 55182300 . T A 1534.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;CNN_1D=-0.298;DP=122;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.542;QD=12.68;ReadPosRankSum=0.705;SOR=0.492 GT:AD:DP:GQ:PL 0/1:56,65:121:99:1542,0,1223 1 55197149 . T C 382.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;CNN_1D=1.702;DP=38;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=1.244;SOR=0.397 GT:AD:DP:GQ:PL 0/1:20,18:38:99:390,0,461 1 55251689 . T C 3172.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.187;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.32;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3186,335,0 1 55266845 . C T 3999.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.760;CNN_1D=0.517;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.98;ReadPosRankSum=1.155;SOR=0.326 GT:AD:DP:GQ:PL 1/1:1,137:138:99:4013,373,0 1 55273580 . G T 3211.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.154;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.67;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3225,336,0 1 55277599 . T C 4319.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.291;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.41;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4333,455,0 1 55319902 . A G 2419.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;CNN_1D=3.563;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.13;ReadPosRankSum=1.791;SOR=0.843 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2433,209,0 1 55330966 . T C 2961.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.454;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.84;SOR=1.251 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2975,288,0 1 55457710 . G A 3897.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.433;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.45;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3911,411,0 1 55474262 . G A 2117.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;CNN_1D=-4.670;DP=173;ExcessHet=3.0103;FS=3.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=0.396;SOR=0.482 GT:AD:DP:GQ:PL 0/1:77,95:172:99:2125,0,1773 1 55518093 . G A 1392.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;CNN_1D=-1.700;DP=114;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-0.723;SOR=0.556 GT:AD:DP:GQ:PL 0/1:55,59:114:99:1400,0,1187 1 55518316 . C T 1174.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;CNN_1D=-2.828;DP=116;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.149;SOR=0.981 GT:AD:DP:GQ:PL 0/1:62,53:115:99:1182,0,1480 1 55518467 . A G 2955.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.968;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.78;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2969,288,0 1 55523033 . A G 2729.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.874;CNN_1D=2.365;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.57;ReadPosRankSum=1.406;SOR=0.799 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2743,247,0 1 55524197 . A G 1503.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.611;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.36;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1517,159,0 1 55524237 . G A 1400.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.518;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.00;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1414,150,0 1 55529187 . G A 1110.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;CNN_1D=-2.662;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-2.095;SOR=0.652 GT:AD:DP:GQ:PL 0/1:73,51:124:99:1118,0,1688 1 55541174 . A G 905.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;CNN_1D=0.496;DP=78;ExcessHet=3.0103;FS=3.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=0.436;SOR=1.135 GT:AD:DP:GQ:PL 0/1:37,41:78:99:913,0,742 1 55638075 . G A 2435.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.797;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.67;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2449,263,0 1 57158051 . G A 816.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;CNN_1D=-0.893;DP=94;ExcessHet=3.0103;FS=2.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.923;SOR=0.462 GT:AD:DP:GQ:PL 0/1:53,41:94:99:824,0,1214 1 57158150 . C T 1267.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;CNN_1D=-3.556;DP=138;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-1.672;SOR=0.564 GT:AD:DP:GQ:PL 0/1:75,63:138:99:1275,0,1628 1 57209695 . T C 1021.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;CNN_1D=-0.465;DP=85;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.312;SOR=1.188 GT:AD:DP:GQ:PL 0/1:42,43:85:99:1029,0,978 1 57258485 . A G 662.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;CNN_1D=1.433;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=0.842;SOR=0.693 GT:AD:DP:GQ:PL 0/1:26,26:52:99:670,0,568 1 57340727 . C A 2214.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.912;CNN_1D=3.590;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.68;ReadPosRankSum=2.004;SOR=1.108 GT:AD:DP:GQ:PL 1/1:2,78:80:99:2228,190,0 1 57422484 . C T 5966.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-4.305;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.75;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5980,645,0 1 59127086 . G A 842.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;CNN_1D=-0.698;DP=84;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-0.509;SOR=0.813 GT:AD:DP:GQ:PL 0/1:47,37:84:99:850,0,1172 1 59127193 . C T 392.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;CNN_1D=-1.091;DP=57;ExcessHet=3.0103;FS=4.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-0.313;SOR=1.485 GT:AD:DP:GQ:PL 0/1:38,19:57:99:400,0,965 1 59131311 . G T 1468.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.692;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.23;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1482,156,0 1 59142713 . T C 260.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;CNN_1D=0.813;DP=38;ExcessHet=3.0103;FS=5.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=0.878;SOR=1.222 GT:AD:DP:GQ:PL 0/1:23,14:37:99:268,0,558 1 59147926 . T C 1138.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;CNN_1D=1.469;DP=83;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=-0.498;SOR=0.534 GT:AD:DP:GQ:PL 0/1:38,45:83:99:1146,0,934 1 59160885 . A G 383.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;CNN_1D=1.890;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=-0.354;SOR=0.941 GT:AD:DP:GQ:PL 0/1:14,16:30:99:391,0,307 1 60392271 . G A 1592.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;CNN_1D=-3.125;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=2.798;SOR=0.696 GT:AD:DP:GQ:PL 0/1:75,71:146:99:1600,0,1735 1 60466814 . T C 729.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;CNN_1D=0.296;DP=74;ExcessHet=3.0103;FS=6.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.322;SOR=1.236 GT:AD:DP:GQ:PL 0/1:42,32:74:99:737,0,990 1 62232031 . C T 2534.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.935;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.96;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2548,281,0 1 62232130 . T C 644.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;CNN_1D=0.107;DP=68;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.528;SOR=1.054 GT:AD:DP:GQ:PL 0/1:39,29:68:99:652,0,1006 1 62253483 . G A 570.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;CNN_1D=-2.154;DP=93;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=1.307;SOR=0.795 GT:AD:DP:GQ:PL 0/1:63,30:93:99:578,0,1387 1 62261168 . A G 877.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;CNN_1D=-0.474;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=-0.669;SOR=0.697 GT:AD:DP:GQ:PL 0/1:43,39:82:99:885,0,924 1 62330080 . T G 3346.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.756;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.10;SOR=0.820 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3360,345,0 1 62380270 . C T 252.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;CNN_1D=0.029;DP=46;ExcessHet=3.0103;FS=2.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.084;SOR=0.823 GT:AD:DP:GQ:PL 0/1:32,14:46:99:260,0,622 1 62380298 . G A 302.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;CNN_1D=0.748;DP=53;ExcessHet=3.0103;FS=4.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=0.870;SOR=0.997 GT:AD:DP:GQ:PL 0/1:38,15:53:99:310,0,871 1 62393394 . A G 1041.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833;CNN_1D=-2.835;DP=119;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=2.344;SOR=0.740 GT:AD:DP:GQ:PL 0/1:65,54:119:99:1049,0,1449 1 62456014 . G A 996.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;CNN_1D=-0.451;DP=96;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.246;SOR=0.556 GT:AD:DP:GQ:PL 0/1:50,46:96:99:1004,0,1140 1 62516683 . G C 1542.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;CNN_1D=-1.266;DP=115;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=0.057;SOR=0.783 GT:AD:DP:GQ:PL 0/1:48,67:115:99:1550,0,1075 1 62579823 . G A 3448.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.056;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.26;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3462,366,0 1 62579891 . G T 1077.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;CNN_1D=1.246;DP=83;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=-2.232;SOR=0.534 GT:AD:DP:GQ:PL 0/1:38,45:83:99:1085,0,816 1 62594593 . C T 755.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;CNN_1D=-2.209;DP=103;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=1.518;SOR=0.443 GT:AD:DP:GQ:PL 0/1:65,38:103:99:763,0,1463 1 62672546 . G A 2931.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.006;CNN_1D=3.407;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.91;ReadPosRankSum=0.424;SOR=0.256 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2945,255,0 1 62673037 . T C 3432.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.228;CNN_1D=2.982;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.64;ReadPosRankSum=-0.165;SOR=0.730 GT:AD:DP:GQ:PL 1/1:2,110:112:99:3446,287,0 1 62673225 . G A 2141.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.807;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.16;SOR=1.195 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2155,213,0 1 62675619 . C T 1503.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;CNN_1D=-6.738;DP=172;ExcessHet=3.0103;FS=3.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.753;SOR=0.968 GT:AD:DP:GQ:PL 0/1:101,71:172:99:1511,0,2422 1 62675644 . ACCTCAGGGCTGGAGGAGGAGGAGGAAGAGC A 1470.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;CNN_1D=-8.269;DP=184;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=1.205;SOR=0.629 GT:AD:DP:GQ:PL 0/1:118,50:168:99:1478,0,4793 1 62675709 . T C 2487.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;CNN_1D=-5.872;DP=187;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=1.628;SOR=0.669 GT:AD:DP:GQ:PL 0/1:83,104:187:99:2495,0,1921 1 62675892 . A G 5346.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.156;CNN_1D=-1.507;DP=181;ExcessHet=3.0103;FS=2.070;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.54;ReadPosRankSum=-0.472;SOR=0.399 GT:AD:DP:GQ:PL 1/1:3,178:181:99:5360,454,0 1 62676091 . C A 4375.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.829;CNN_1D=-0.058;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.36;ReadPosRankSum=-0.570;SOR=0.390 GT:AD:DP:GQ:PL 1/1:1,148:149:99:4389,407,0 1 62676612 . A G 1486.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.832;CNN_1D=1.441;DP=90;ExcessHet=3.0103;FS=6.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.52;ReadPosRankSum=1.144;SOR=0.955 GT:AD:DP:GQ:PL 0/1:39,51:90:99:1494,0,899 1 62677048 . G T 912.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;CNN_1D=2.605;DP=61;ExcessHet=3.0103;FS=12.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=-0.465;SOR=0.107 GT:AD:DP:GQ:PL 0/1:25,35:60:99:920,0,653 1 62713224 . C G 3073.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.067;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=1.279 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3087,315,0 1 62713246 . G A 1413.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;CNN_1D=-1.270;DP=120;ExcessHet=3.0103;FS=5.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=0.085;SOR=0.358 GT:AD:DP:GQ:PL 0/1:54,65:119:99:1421,0,1142 1 62728784 . A G 1651.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;CNN_1D=3.698;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.47;ReadPosRankSum=1.428;SOR=1.302 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1665,124,0 1 62728838 . T C 3751.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.817;CNN_1D=2.792;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.95;ReadPosRankSum=-1.780;SOR=0.887 GT:AD:DP:GQ:PL 1/1:2,88:90:99:3765,182,0 1 62728861 . T C 4258.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.947;CNN_1D=2.054;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.43;ReadPosRankSum=-1.312;SOR=0.967 GT:AD:DP:GQ:PL 1/1:2,105:107:99:4272,227,0 1 62728918 . G A 3346.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.264;CNN_1D=2.414;DP=119;ExcessHet=3.0103;FS=3.197;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.12;ReadPosRankSum=1.048;SOR=0.386 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3360,319,0 1 62732421 . T C 904.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;CNN_1D=-0.916;DP=90;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=0.379;SOR=0.793 GT:AD:DP:GQ:PL 0/1:45,45:90:99:912,0,975 1 62738904 . T C 2153.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.159;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.09;SOR=1.547 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2167,221,0 1 62739495 . C T 1661.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;CNN_1D=-4.539;DP=155;ExcessHet=3.0103;FS=3.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-2.051;SOR=0.963 GT:AD:DP:GQ:PL 0/1:85,69:154:99:1669,0,2041 1 62740065 . A G 1269.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;CNN_1D=-1.309;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.551;SOR=0.660 GT:AD:DP:GQ:PL 0/1:53,52:105:99:1277,0,1339 1 62740264 . T C 1864.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;CNN_1D=-1.509;DP=121;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.678;SOR=0.908 GT:AD:DP:GQ:PL 0/1:47,74:121:99:1872,0,1095 1 62740446 . T C 6421.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.336;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.60;SOR=1.037 GT:AD:DP:GQ:PL 1/1:0,146:146:99:6435,439,0 1 62740449 . T C 6421.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.742;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=35.56;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,141:141:99:6435,439,0 1 62960101 . A G 1451.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;CNN_1D=-2.932;DP=123;ExcessHet=3.0103;FS=3.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=-1.553;SOR=0.998 GT:AD:DP:GQ:PL 0/1:59,64:123:99:1459,0,1333 1 63044645 . CA C 46.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;CNN_1D=-1.421;DP=38;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.162;SOR=0.368 GT:AD:DP:GQ:PL 0/1:23,6:29:54:54,0,451 1 63788951 . C A 863.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;CNN_1D=0.186;DP=74;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=-0.409;SOR=0.901 GT:AD:DP:GQ:PL 0/1:39,34:73:99:871,0,1040 1 63876926 . A G 1179.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;CNN_1D=-0.153;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=1.054;SOR=0.752 GT:AD:DP:GQ:PL 0/1:42,52:94:99:1187,0,914 1 63881552 . C T 1213.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.837;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.96;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1227,134,0 1 63991267 . T C 1067.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;CNN_1D=-1.504;DP=107;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-0.584;SOR=0.742 GT:AD:DP:GQ:PL 0/1:57,50:107:99:1075,0,1192 1 63997633 . A T 541.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;CNN_1D=-1.172;DP=75;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=1.901;SOR=0.582 GT:AD:DP:GQ:PL 0/1:46,28:74:99:549,0,1066 1 63999826 . C T 520.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;CNN_1D=-1.735;DP=87;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=1.023;SOR=0.877 GT:AD:DP:GQ:PL 0/1:59,28:87:99:528,0,1394 1 63999868 . T C 442.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;CNN_1D=-0.633;DP=61;ExcessHet=3.0103;FS=5.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-1.184;SOR=1.392 GT:AD:DP:GQ:PL 0/1:38,23:61:99:450,0,958 1 63999891 . T C 332.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;CNN_1D=1.076;DP=43;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=-0.637;SOR=1.270 GT:AD:DP:GQ:PL 0/1:28,15:43:99:340,0,678 1 64021096 . G A 565.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;CNN_1D=1.077;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-0.971;SOR=0.726 GT:AD:DP:GQ:PL 0/1:34,26:60:99:573,0,860 1 64038107 . G T 146.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;CNN_1D=-0.157;DP=24;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-1.012;SOR=1.179 GT:AD:DP:GQ:PL 0/1:16,8:24:99:154,0,386 1 64097432 . C T 742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;CNN_1D=-1.160;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-1.658;SOR=0.687 GT:AD:DP:GQ:PL 0/1:48,37:85:99:750,0,1026 1 64515379 . C T 2237.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.160;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.23;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2251,222,0 1 64608329 . G T 2228.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.654;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.29;SOR=1.785 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2242,207,0 1 64624842 . A G 1330.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;CNN_1D=-0.506;DP=101;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=3.452;SOR=0.476 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1338,0,1023 1 64643277 . C T 3467.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;CNN_1D=1.094;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.96;ReadPosRankSum=-1.125;SOR=0.991 GT:AD:DP:GQ:PL 1/1:4,120:124:99:3481,272,0 1 64672478 . A G 595.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;CNN_1D=0.267;DP=68;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-2.262;SOR=0.512 GT:AD:DP:GQ:PL 0/1:38,30:68:99:603,0,916 1 65016349 . A T 1525.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.444;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.73;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1539,165,0 1 65113568 . T C 2953.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.478;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.60;SOR=0.750 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2967,321,0 1 65311262 . G A 6012.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;CNN_1D=-3.366;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.71;ReadPosRankSum=-1.160;SOR=0.740 GT:AD:DP:GQ:PL 1/1:2,215:217:99:6026,601,0 1 65858145 . G A 3429.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.397;CNN_1D=2.007;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.43;ReadPosRankSum=0.186;SOR=0.586 GT:AD:DP:GQ:PL 1/1:3,122:125:99:3443,283,0 1 65860687 . A C 2890.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.824;CNN_1D=1.752;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.01;ReadPosRankSum=0.644;SOR=0.876 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2904,243,0 1 65886398 . T C 2779.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.996;CNN_1D=2.916;DP=96;ExcessHet=3.0103;FS=3.488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.95;ReadPosRankSum=0.397;SOR=0.603 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2793,248,0 1 66829262 . A G 2436.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.235;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.66;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2450,255,0 1 67195022 . G A 1215.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;CNN_1D=-3.918;DP=146;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.945;SOR=0.853 GT:AD:DP:GQ:PL 0/1:86,60:146:99:1223,0,1897 1 67266756 . T A 3963.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.656;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.51;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3977,417,0 1 67288045 . C T 630.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;CNN_1D=0.026;DP=73;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-0.274;SOR=0.452 GT:AD:DP:GQ:PL 0/1:42,31:73:99:638,0,995 1 67292737 . TA T 93.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;CNN_1D=-0.309;DP=42;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-1.603;SOR=0.275 GT:AD:DP:GQ:PL 0/1:31,8:39:99:101,0,767 1 67390416 . G C 3286.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.938;CNN_1D=2.205;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.57;ReadPosRankSum=-1.926;SOR=0.822 GT:AD:DP:GQ:PL 1/1:2,113:115:99:3300,295,0 1 67390468 . C G 3310.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.907;CNN_1D=2.326;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.29;ReadPosRankSum=1.010;SOR=0.820 GT:AD:DP:GQ:PL 1/1:2,115:117:99:3324,302,0 1 67558739 . C T 953.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.322;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.77;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,30:30:90:967,90,0 1 67560956 . C T 2703.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.245;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.76;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2717,302,0 1 67633812 . G T 2394.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.518;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.60;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2408,269,0 1 67685387 . T C 814.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;CNN_1D=-0.612;DP=90;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.555;SOR=0.853 GT:AD:DP:GQ:PL 0/1:49,41:90:99:822,0,1077 1 67705900 . G A 718.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;CNN_1D=0.047;DP=80;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-0.827;SOR=0.663 GT:AD:DP:GQ:PL 0/1:44,36:80:99:726,0,1017 1 67795319 . T C 3693.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.562;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.19;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3707,422,0 1 67852335 . G A 823.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;CNN_1D=-1.188;DP=98;ExcessHet=3.0103;FS=3.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=-0.268;SOR=0.513 GT:AD:DP:GQ:PL 0/1:61,37:98:99:831,0,1425 1 67861520 . C A 6760.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.596;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.04;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6774,674,0 1 72058552 . G A 3909.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.628;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.34;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3923,428,0 1 74575182 . C T 1268.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.869;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.98;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1282,141,0 1 74665493 . G A 3317.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.939;CNN_1D=2.490;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.84;ReadPosRankSum=0.105;SOR=0.303 GT:AD:DP:GQ:PL 1/1:1,114:115:99:3331,305,0 1 74671519 . A G 1363.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.264;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.63;SOR=1.765 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1377,138,0 1 75036812 . C T 3588.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.378;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.98;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3602,398,0 1 75037845 . A G 5100.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.439;CNN_1D=-2.660;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.87;ReadPosRankSum=0.382;SOR=0.727 GT:AD:DP:GQ:PL 1/1:4,179:183:99:5114,424,0 1 75038228 . A C 3802.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.288;CNN_1D=2.288;DP=128;ExcessHet=3.0103;FS=6.407;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.94;ReadPosRankSum=1.375;SOR=0.306 GT:AD:DP:GQ:PL 1/1:2,125:127:99:3816,304,0 1 75042626 . TA T 98.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;CNN_1D=-3.139;DP=88;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-1.169;SOR=0.904 GT:AD:DP:GQ:PL 0/1:67,16:83:99:106,0,1415 1 75172001 . T A 2023.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.356;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.10;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2037,216,0 1 75190452 . C T 2134.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.949;CNN_1D=2.993;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.36;ReadPosRankSum=-1.075;SOR=0.693 GT:AD:DP:GQ:PL 1/1:2,76:78:99:2148,185,0 1 75602384 . G T 1056.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;CNN_1D=-0.927;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-1.414;SOR=0.734 GT:AD:DP:GQ:PL 0/1:38,48:86:99:1064,0,898 1 75622616 . C T 4218.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.040;CNN_1D=-1.390;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.20;ReadPosRankSum=1.983;SOR=0.870 GT:AD:DP:GQ:PL 1/1:4,157:161:99:4232,383,0 1 75681511 . T C 1687.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.329;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.18;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1701,200,0 1 75699771 . A G 1198.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;CNN_1D=-0.449;DP=97;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-0.597;SOR=0.793 GT:AD:DP:GQ:PL 0/1:45,52:97:99:1206,0,1005 1 75702674 . G A 357.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;CNN_1D=0.700;DP=48;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=0.295;SOR=0.312 GT:AD:DP:GQ:PL 0/1:29,19:48:99:365,0,687 1 75716925 . C T 808.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;CNN_1D=-0.092;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.592;SOR=0.620 GT:AD:DP:GQ:PL 0/1:45,37:82:99:816,0,997 1 76257892 . A T 1635.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.416;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.71;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1649,177,0 1 76344011 . C A 1149.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.930;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.36;SOR=1.259 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1163,126,0 1 76344705 . T C 620.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;CNN_1D=0.909;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-1.817;SOR=0.807 GT:AD:DP:GQ:PL 0/1:26,30:56:99:628,0,585 1 76344711 . A T 2155.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.121;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.91;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2169,174,0 1 76378502 . G A 758.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;CNN_1D=1.391;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=-0.725;SOR=0.627 GT:AD:DP:GQ:PL 0/1:25,37:62:99:766,0,528 1 76397972 . C T 887.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;CNN_1D=2.700;DP=63;ExcessHet=3.0103;FS=3.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=1.790;SOR=0.313 GT:AD:DP:GQ:PL 0/1:30,33:63:99:895,0,792 1 77558057 . G C 447.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;CNN_1D=2.334;DP=40;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-0.461;SOR=1.140 GT:AD:DP:GQ:PL 0/1:20,20:40:99:455,0,404 1 77627096 . G A 2018.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.673;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.68;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2032,204,0 1 77634948 . G A 1741.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.740;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.08;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1755,186,0 1 77763542 . G A 2650.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.021;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.12;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2664,273,0 1 78024284 . T C 647.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;CNN_1D=1.140;DP=48;ExcessHet=3.0103;FS=4.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=0.429;SOR=1.329 GT:AD:DP:GQ:PL 0/1:20,28:48:99:655,0,417 1 78024345 . C CTAT 1506.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;CNN_1D=1.869;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.18;ReadPosRankSum=1.432;SOR=0.591 GT:AD:DP:GQ:PL 0/1:27,38:65:99:1514,0,1137 1 78034156 . CAA C 295.23 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036;CNN_1D=-2.621;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.71;ReadPosRankSum=-0.385;SOR=0.525 GT:AD:DP:GQ:PL 1/1:1,12:13:18:301,18,0 1 78178976 . T A 795.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;CNN_1D=1.830;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.50;ReadPosRankSum=0.029;SOR=0.856 GT:AD:DP:GQ:PL 0/1:11,32:43:99:803,0,193 1 78184325 . A G 492.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;CNN_1D=3.412;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=1.366;SOR=0.582 GT:AD:DP:GQ:PL 0/1:13,19:32:99:500,0,264 1 78196300 . T C 221.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;CNN_1D=1.774;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.666;SOR=0.673 GT:AD:DP:GQ:PL 0/1:15,10:25:99:229,0,381 1 78201745 . G T 342.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;CNN_1D=1.626;DP=41;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=0.382;SOR=0.368 GT:AD:DP:GQ:PL 0/1:23,18:41:99:350,0,529 1 78435701 . TA T 57.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;CNN_1D=-1.745;DP=49;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.132;SOR=0.994 GT:AD:DP:GQ:PL 0/1:36,7:43:65:65,0,816 1 78958451 . A T 751.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.411;CNN_1D=0.927;DP=63;ExcessHet=3.0103;FS=3.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-0.424;SOR=1.207 GT:AD:DP:GQ:PL 0/1:36,27:63:99:759,0,892 1 78958491 . C T 1013.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;CNN_1D=-1.800;DP=108;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=1.221;SOR=0.566 GT:AD:DP:GQ:PL 0/1:60,48:108:99:1021,0,1493 1 79128570 . G GT 5459.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.135;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.66;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,136:136:99:5473,409,0 1 79357360 . G C 1577.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;CNN_1D=3.664;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=1.647;SOR=0.960 GT:AD:DP:GQ:PL 1/1:4,57:61:84:1591,84,0 1 82421596 . C T 2945.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.126;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.52;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2959,320,0 1 84791374 . C T 1293.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;CNN_1D=-1.274;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=-0.807;SOR=0.661 GT:AD:DP:GQ:PL 0/1:57,56:113:99:1301,0,1186 1 84880380 . T C 1837.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;CNN_1D=-3.268;DP=145;ExcessHet=3.0103;FS=6.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-1.857;SOR=0.770 GT:AD:DP:GQ:PL 0/1:67,78:145:99:1845,0,1543 1 85029077 . C T 510.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;CNN_1D=2.289;DP=41;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=0.039;SOR=1.179 GT:AD:DP:GQ:PL 0/1:18,23:41:99:518,0,379 1 85031630 . G A 954.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;CNN_1D=-0.297;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.224;SOR=0.687 GT:AD:DP:GQ:PL 0/1:46,50:96:99:962,0,891 1 85040024 . CAGCAGCGCT C 239.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;CNN_1D=-1.218;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=1.464;SOR=0.786 GT:AD:DP:GQ:PL 0/1:35,14:49:99:247,0,2117 1 85113203 . T C 1101.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327;CNN_1D=-2.779;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.356;SOR=0.691 GT:AD:DP:GQ:PL 0/1:65,56:121:99:1109,0,1538 1 85488030 . G A 1952.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.438;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.03;SOR=1.000 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1966,195,0 1 85589939 . GT G 2979.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.065;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.52;SOR=1.031 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2993,241,0 1 85624549 . C T 3240.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.498;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.93;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3254,335,0 1 85624864 . G A 3364.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.916;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.03;SOR=0.950 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3378,358,0 1 85648620 . C T 3568.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.400;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.50;SOR=0.710 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3582,350,0 1 85666156 . T G 1621.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;CNN_1D=-3.611;DP=147;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=0.256;SOR=0.620 GT:AD:DP:GQ:PL 0/1:75,72:147:99:1629,0,1777 1 85724328 . C T 1616.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;CNN_1D=-4.691;DP=159;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.901;SOR=0.675 GT:AD:DP:GQ:PL 0/1:84,75:159:99:1624,0,1818 1 86435957 . TA T 155.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;CNN_1D=-1.556;DP=59;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.541;SOR=0.484 GT:AD:DP:GQ:PL 0/1:41,12:53:99:163,0,780 1 86487914 . C A 1063.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;CNN_1D=-2.408;DP=111;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-0.277;SOR=0.796 GT:AD:DP:GQ:PL 0/1:58,50:108:99:1071,0,1270 1 86487981 . G A 1042.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;CNN_1D=-1.297;DP=101;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=0.238;SOR=0.636 GT:AD:DP:GQ:PL 0/1:53,47:100:99:1050,0,1241 1 86512536 . C T 512.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;CNN_1D=1.636;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-0.053;SOR=0.622 GT:AD:DP:GQ:PL 0/1:24,23:47:99:520,0,590 1 86557967 . G A 548.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;CNN_1D=0.038;DP=77;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=0.621;SOR=0.652 GT:AD:DP:GQ:PL 0/1:47,29:76:99:556,0,1035 1 86590915 . G A 3341.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.766;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.10;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3355,333,0 1 86591141 . A G 1363.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;CNN_1D=-2.336;DP=123;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=0.953;SOR=0.802 GT:AD:DP:GQ:PL 0/1:65,58:123:99:1371,0,1543 1 86591837 . G A 1158.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;CNN_1D=-2.254;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=0.567;SOR=0.672 GT:AD:DP:GQ:PL 0/1:66,54:120:99:1166,0,1537 1 86818572 . T C 1181.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.672;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.12;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1195,126,0 1 86820267 . C T 1985.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.942;CNN_1D=2.957;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.19;ReadPosRankSum=-1.910;SOR=0.904 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1999,169,0 1 86838158 . C T 1098.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.615;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.78;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1112,123,0 1 86847955 . G A 321.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;CNN_1D=-0.264;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=1.287;SOR=0.784 GT:AD:DP:GQ:PL 0/1:38,19:57:99:329,0,868 1 86852621 . A G 951.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;CNN_1D=1.283;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-0.284;SOR=0.675 GT:AD:DP:GQ:PL 0/1:27,43:70:99:959,0,504 1 86896541 . G A 284.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;CNN_1D=-0.505;DP=57;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.433;SOR=1.112 GT:AD:DP:GQ:PL 0/1:42,15:57:99:292,0,1014 1 86913265 . C T 1420.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;CNN_1D=-5.314;DP=144;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=0.122;SOR=0.982 GT:AD:DP:GQ:PL 0/1:78,66:144:99:1428,0,1698 1 86920904 . A G 1627.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;CNN_1D=-3.262;DP=143;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=2.111;SOR=0.508 GT:AD:DP:GQ:PL 0/1:70,73:143:99:1635,0,1546 1 86939130 . C T 2895.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.474;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.57;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2909,314,0 1 86947975 . A T 1265.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;CNN_1D=-1.978;DP=111;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.103;SOR=0.732 GT:AD:DP:GQ:PL 0/1:55,56:111:99:1273,0,1175 1 86952324 . A G 4318.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.120;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.79;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4332,449,0 1 86959173 . T C 4642.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.886;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.63;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4656,504,0 1 87045896 . TCCTACA T 2127.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;CNN_1D=-3.831;DP=144;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=0.391;SOR=0.692 GT:AD:DP:GQ:PL 0/1:77,60:137:99:2135,0,3937 1 87380851 . A G 608.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;CNN_1D=0.554;DP=66;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.187;SOR=0.539 GT:AD:DP:GQ:PL 0/1:37,29:66:99:616,0,739 1 89322982 . G A 4043.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.122;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.47;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4057,426,0 1 89426902 . G A 400.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;CNN_1D=0.819;DP=52;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=1.445;SOR=0.910 GT:AD:DP:GQ:PL 0/1:33,19:52:99:408,0,812 1 89449278 . C T 769.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;CNN_1D=-15.992;DP=236;ExcessHet=3.0103;FS=16.163;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-8.343;QD=3.30;ReadPosRankSum=-2.138;SOR=1.713 GT:AD:DP:GQ:PL 0/1:183,50:233:99:777,0,4934 1 89449298 . C G 1091.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;CNN_1D=-15.953;DP=245;ExcessHet=3.0103;FS=12.632;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-8.202;QD=4.51;ReadPosRankSum=0.092;SOR=1.419 GT:AD:DP:GQ:PL 0/1:180,62:242:99:1099,0,4745 1 89449390 . T C 3581.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.964;CNN_1D=-14.036;DP=272;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-5.303;QD=13.67;ReadPosRankSum=2.657;SOR=0.653 GT:AD:DP:GQ:PL 0/1:163,99:262:99:3589,0,6369 1 89449399 . T C 3438.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;CNN_1D=-12.359;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-5.039;QD=13.65;ReadPosRankSum=2.659;SOR=0.685 GT:AD:DP:GQ:PL 0/1:158,94:252:99:3446,0,6333 1 89449434 . T C 1156.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;CNN_1D=-13.617;DP=232;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-4.965;QD=5.14;ReadPosRankSum=1.699;SOR=0.599 GT:AD:DP:GQ:PL 0/1:158,67:225:99:1164,0,4016 1 89449483 . C G 423.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.373;CNN_1D=-11.899;DP=184;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-3.406;QD=2.38;ReadPosRankSum=-6.422;SOR=0.514 GT:AD:DP:GQ:PL 0/1:141,37:178:99:431,0,3565 1 89479063 . G A 736.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;CNN_1D=0.040;DP=78;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-1.200;SOR=0.936 GT:AD:DP:GQ:PL 0/1:44,34:78:99:744,0,1061 1 89479074 . C T 691.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;CNN_1D=0.837;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.858;SOR=0.768 GT:AD:DP:GQ:PL 0/1:44,32:76:99:699,0,1038 1 89479758 . T C 756.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;CNN_1D=0.715;DP=76;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.115;SOR=0.559 GT:AD:DP:GQ:PL 0/1:43,33:76:99:764,0,1082 1 89522646 . G C 6073.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.738;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.77;QD=28.38;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6087,642,0 1 89579941 . T C 3873.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.139;CNN_1D=0.642;DP=141;ExcessHet=3.0103;FS=2.945;MLEAC=2;MLEAF=1.00;MQ=59.53;MQRankSum=-0.326;QD=27.47;ReadPosRankSum=1.491;SOR=0.175 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3887,348,0 1 89582690 . G C 3100.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.884;CNN_1D=1.615;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.93;ReadPosRankSum=1.696;SOR=1.200 GT:AD:DP:GQ:PL 1/1:2,109:111:99:3114,283,0 1 89599037 . A G 73.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;CNN_1D=-9.326;DP=126;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-6.112;QD=0.58;ReadPosRankSum=0.530;SOR=0.527 GT:AD:DP:GQ:PL 0/1:108,18:126:81:81,0,2665 1 89599070 . T C 297.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;CNN_1D=-9.558;DP=124;ExcessHet=3.0103;FS=2.201;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-5.867;QD=2.42;ReadPosRankSum=-0.714;SOR=0.454 GT:AD:DP:GQ:PL 0/1:107,16:123:99:305,0,6147 1 89599084 . G C 280.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;CNN_1D=-9.776;DP=113;ExcessHet=3.0103;FS=4.085;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-6.301;QD=2.48;ReadPosRankSum=-2.016;SOR=0.586 GT:AD:DP:GQ:PL 0/1:100,13:113:99:288,0,6021 1 89599106 . T C 36.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;CNN_1D=-10.032;DP=88;ExcessHet=3.0103;FS=4.025;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-7.110;QD=0.42;ReadPosRankSum=-1.848;SOR=0.799 GT:AD:DP:GQ:PL 0/1:83,5:88:44:44,0,4981 1 89637578 . G A 3644.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.758;CNN_1D=1.611;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.40;ReadPosRankSum=-0.013;SOR=0.339 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3658,358,0 1 89652071 . T C 6695.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.085;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.54;QD=29.55;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,148:148:99:6709,451,0 1 89652072 . C T 6695.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.607;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.49;QD=36.88;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,146:146:99:6709,451,0 1 89652078 . A T 6650.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.073;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.54;QD=33.27;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,148:148:99:6664,369,0 1 89652087 . C T 6482.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.840;CNN_1D=-1.760;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQRankSum=-0.731;QD=25.16;ReadPosRankSum=2.312;SOR=0.751 GT:AD:DP:GQ:PL 1/1:2,140:142:99:6496,288,0 1 89652088 . C G 6482.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.453;CNN_1D=-1.776;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQRankSum=-0.731;QD=24.95;ReadPosRankSum=2.277;SOR=0.751 GT:AD:DP:GQ:PL 1/1:2,140:142:99:6496,288,0 1 89652090 . T G 6122.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.309;CNN_1D=-0.862;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQRankSum=-0.738;QD=32.31;ReadPosRankSum=2.196;SOR=0.783 GT:AD:DP:GQ:PL 1/1:2,138:140:99:6136,264,0 1 89652094 . G A 6032.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.929;CNN_1D=0.854;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQRankSum=-0.744;QD=34.44;ReadPosRankSum=2.085;SOR=0.784 GT:AD:DP:GQ:PL 1/1:2,136:138:99:6046,258,0 1 89652097 . C T 5942.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.573;CNN_1D=-1.439;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQRankSum=-0.744;QD=28.41;ReadPosRankSum=1.907;SOR=0.784 GT:AD:DP:GQ:PL 1/1:2,136:138:99:5956,252,0 1 89652102 . A T 5672.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.703;CNN_1D=-0.723;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQRankSum=-0.769;QD=29.90;ReadPosRankSum=1.821;SOR=0.876 GT:AD:DP:GQ:PL 1/1:2,129:131:99:5686,234,0 1 89847372 . G T 4347.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.585;CNN_1D=0.311;DP=155;ExcessHet=3.0103;FS=6.336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.05;ReadPosRankSum=0.087;SOR=0.269 GT:AD:DP:GQ:PL 1/1:2,153:155:99:4361,385,0 1 89847411 . C T 3614.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.541;CNN_1D=-0.531;DP=148;ExcessHet=3.0103;FS=2.077;MLEAC=2;MLEAF=1.00;MQ=59.74;MQRankSum=-0.316;QD=24.42;ReadPosRankSum=0.367;SOR=0.267 GT:AD:DP:GQ:PL 1/1:4,144:148:99:3628,307,0 1 89847444 . A G 3439.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.308;CNN_1D=0.829;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQRankSum=-0.342;QD=27.08;ReadPosRankSum=-0.780;SOR=1.046 GT:AD:DP:GQ:PL 1/1:4,123:127:99:3453,282,0 1 89849201 . C G 1515.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.397;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.23;SOR=1.514 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1529,141,0 1 89849742 . A T 4048.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.328;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.73;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4062,437,0 1 90178743 . A G 4642.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.347;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.74;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4656,453,0 1 90486412 . T G 774.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;CNN_1D=-2.525;DP=100;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=-0.229;SOR=0.662 GT:AD:DP:GQ:PL 0/1:63,37:100:99:782,0,1491 1 90493026 . G A 1741.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;CNN_1D=-4.116;DP=138;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-1.232;QD=12.81;ReadPosRankSum=1.309;SOR=0.891 GT:AD:DP:GQ:PL 0/1:59,77:136:99:1749,0,1316 1 91728053 . G A 1869.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.402;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.90;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1883,201,0 1 91781413 . T G 1985.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.276;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.47;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1999,224,0 1 91851253 . T C 2601.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.936;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.56;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2615,263,0 1 91859795 . T C 2903.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.687;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.24;SOR=0.969 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2917,288,0 1 91980447 . A G 1709.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;CNN_1D=-4.599;DP=149;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.818;SOR=0.599 GT:AD:DP:GQ:PL 0/1:68,81:149:99:1717,0,1530 1 92174260 . A G 2998.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.790;CNN_1D=1.730;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.76;ReadPosRankSum=-1.790;SOR=0.731 GT:AD:DP:GQ:PL 1/1:2,106:108:99:3012,273,0 1 92177938 . A G 1650.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;CNN_1D=-3.042;DP=142;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=1.476;SOR=0.601 GT:AD:DP:GQ:PL 0/1:73,69:142:99:1658,0,1843 1 92185657 . C T 3910.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.422;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.85;SOR=1.323 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3924,393,0 1 92262874 . T C 882.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;CNN_1D=-0.781;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-1.196;SOR=0.793 GT:AD:DP:GQ:PL 0/1:44,39:83:99:890,0,970 1 92327045 . G A 2202.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.174;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.53;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2216,239,0 1 92442695 . A C 3013.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.140;CNN_1D=1.873;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.14;ReadPosRankSum=-0.222;SOR=0.789 GT:AD:DP:GQ:PL 1/1:4,107:111:99:3027,222,0 1 92646021 . G A 1437.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;CNN_1D=2.111;DP=89;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.15;ReadPosRankSum=0.625;SOR=0.489 GT:AD:DP:GQ:PL 0/1:34,55:89:99:1445,0,816 1 92647223 . A G 1081.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;CNN_1D=0.449;DP=82;ExcessHet=3.0103;FS=4.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=0.958;SOR=0.886 GT:AD:DP:GQ:PL 0/1:37,44:81:99:1089,0,958 1 92647532 . C A 3430.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.567;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.83;SOR=0.710 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3444,345,0 1 92763091 . CA C 134.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;CNN_1D=-0.781;DP=45;ExcessHet=3.0103;FS=4.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=1.493;SOR=2.012 GT:AD:DP:GQ:PL 0/1:24,11:35:99:142,0,407 1 92944314 . C CAGAGAG 276.96 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.345;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.09;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,7:7:16:291,16,0 1 92946479 . G A 1995.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.466;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.78;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2009,201,0 1 92979354 . A G 4131.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.287;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.93;SOR=0.880 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4145,414,0 1 93073228 . C A 1046.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;CNN_1D=-1.696;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=1.752;SOR=0.639 GT:AD:DP:GQ:PL 0/1:57,46:103:99:1054,0,1313 1 93089823 . T C 2480.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.015;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.87;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2494,266,0 1 93160902 . T C 2047.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.110;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.43;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2061,216,0 1 93580581 . G C 2071.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.465;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.99;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2085,222,0 1 93581024 . T C 625.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.858;CNN_1D=2.200;DP=47;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=1.297;SOR=0.775 GT:AD:DP:GQ:PL 0/1:21,26:47:99:633,0,401 1 93620393 . G A 1854.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;CNN_1D=-3.099;DP=141;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=1.907;SOR=0.939 GT:AD:DP:GQ:PL 0/1:60,81:141:99:1862,0,1200 1 93672688 . C T 245.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.693;CNN_1D=0.077;DP=32;ExcessHet=3.0103;FS=9.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=2.523;SOR=2.621 GT:AD:DP:GQ:PL 0/1:22,10:32:99:253,0,501 1 93672723 . A C 1374.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.296;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.23;SOR=1.659 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1388,141,0 1 93720070 . C G 772.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;CNN_1D=1.432;DP=68;ExcessHet=3.0103;FS=3.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-0.104;SOR=0.373 GT:AD:DP:GQ:PL 0/1:33,35:68:99:780,0,832 1 94341267 . A G 663.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;CNN_1D=-1.089;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-0.811;SOR=0.639 GT:AD:DP:GQ:PL 0/1:51,33:84:99:671,0,1159 1 94342564 . C A 1456.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.795;CNN_1D=-0.841;DP=106;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-0.351;SOR=0.496 GT:AD:DP:GQ:PL 0/1:43,63:106:99:1464,0,1087 1 94343023 . A G 1618.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;CNN_1D=-1.969;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=1.438;SOR=0.722 GT:AD:DP:GQ:PL 0/1:61,64:125:99:1626,0,1417 1 94343233 . T C 4325.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.101;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.24;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4339,429,0 1 94463641 . T C 1110.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434;CNN_1D=2.540;DP=65;ExcessHet=3.0103;FS=6.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.09;ReadPosRankSum=0.448;SOR=0.205 GT:AD:DP:GQ:PL 0/1:19,46:65:99:1118,0,456 1 94471075 . A G 3499.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.626;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.12;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3513,386,0 1 94473845 . T C 998.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;CNN_1D=-3.106;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-1.330;SOR=0.705 GT:AD:DP:GQ:PL 0/1:73,53:126:99:1006,0,1626 1 94474328 . T C 646.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;CNN_1D=1.552;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=0.017;SOR=0.610 GT:AD:DP:GQ:PL 0/1:27,28:55:99:654,0,680 1 94476388 . C G 1791.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;CNN_1D=-5.884;DP=169;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.534;SOR=0.796 GT:AD:DP:GQ:PL 0/1:88,80:168:99:1799,0,1960 1 94544234 . T C 953.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;CNN_1D=-0.110;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-1.611;SOR=0.632 GT:AD:DP:GQ:PL 0/1:39,46:85:99:961,0,907 1 94578548 . T C 2219.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.126;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.40;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2233,242,0 1 94639447 . C T 2341.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.370;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.90;SOR=1.193 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2355,242,0 1 94930345 . G A 2104.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.028;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.22;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2118,216,0 1 95001600 . A C 3819.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.423;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.88;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3833,411,0 1 95294089 . T C 775.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;CNN_1D=-0.140;DP=77;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-1.204;SOR=0.783 GT:AD:DP:GQ:PL 0/1:40,37:77:99:783,0,891 1 95330372 . G A 1149.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;CNN_1D=-1.722;DP=112;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=0.516;SOR=0.460 GT:AD:DP:GQ:PL 0/1:58,54:112:99:1157,0,1249 1 95530539 . C T 1001.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;CNN_1D=0.278;DP=82;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=0.889;SOR=0.823 GT:AD:DP:GQ:PL 0/1:39,42:81:99:1009,0,877 1 95709821 . T C 5174.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.940;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.57;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5188,525,0 1 95709939 . T G 4541.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.082;CNN_1D=0.485;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.49;ReadPosRankSum=0.223;SOR=0.719 GT:AD:DP:GQ:PL 1/1:2,152:154:99:4555,412,0 1 98348885 . G A 2897.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.296;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.10;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2911,333,0 1 99127392 . T C 2146.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.555;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.24;SOR=0.920 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2160,228,0 1 99164434 . G A 735.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;CNN_1D=0.769;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=1.464;SOR=0.804 GT:AD:DP:GQ:PL 0/1:34,36:70:99:743,0,764 1 99203837 . T C 755.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;CNN_1D=0.666;DP=73;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-1.867;SOR=0.569 GT:AD:DP:GQ:PL 0/1:38,35:73:99:763,0,935 1 99225627 . G A 3339.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.814;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.30;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3353,352,0 1 100203648 . C T 819.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;CNN_1D=-3.079;DP=120;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-0.725;SOR=0.551 GT:AD:DP:GQ:PL 0/1:76,44:120:99:827,0,1784 1 100203693 . G A 1538.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;CNN_1D=-4.994;DP=161;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-1.019;SOR=0.781 GT:AD:DP:GQ:PL 0/1:89,72:161:99:1546,0,1938 1 100316589 . A G 894.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;CNN_1D=-1.124;DP=86;ExcessHet=3.0103;FS=4.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-0.778;SOR=1.147 GT:AD:DP:GQ:PL 0/1:45,41:86:99:902,0,915 1 100336361 . C T 509.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;CNN_1D=2.501;DP=50;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=1.617;SOR=0.514 GT:AD:DP:GQ:PL 0/1:27,23:50:99:517,0,653 1 100346741 . T C 1115.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;CNN_1D=-0.330;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=1.238;SOR=0.684 GT:AD:DP:GQ:PL 0/1:45,47:92:99:1123,0,943 1 100575933 . G A 724.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;CNN_1D=1.112;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=0.432;SOR=0.651 GT:AD:DP:GQ:PL 0/1:38,33:71:99:732,0,791 1 100598866 . G A 4136.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;CNN_1D=1.855;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.13;ReadPosRankSum=-0.709;SOR=1.099 GT:AD:DP:GQ:PL 1/1:2,97:99:99:4150,199,0 1 100598867 . C T 4136.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.648;CNN_1D=2.860;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=32.70;ReadPosRankSum=-0.691;SOR=1.132 GT:AD:DP:GQ:PL 1/1:2,96:98:99:4150,199,0 1 100671867 . A T 148.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;CNN_1D=-1.362;DP=29;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-0.499;SOR=0.744 GT:AD:DP:GQ:PL 0/1:14,13:27:99:269,0,242 1 100672060 . T C 1792.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.727;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.57;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1806,194,0 1 101005090 . G A 296.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;CNN_1D=2.116;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=2.583;SOR=0.602 GT:AD:DP:GQ:PL 0/1:19,12:31:99:304,0,449 1 101203827 . G A 1938.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.664;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.93;SOR=0.990 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1952,201,0 1 101704532 . G T 594.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.259;CNN_1D=1.911;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=0.671;SOR=0.892 GT:AD:DP:GQ:PL 0/1:25,24:49:99:602,0,702 1 103352451 . A G 795.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;CNN_1D=-0.649;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.238;SOR=0.704 GT:AD:DP:GQ:PL 0/1:45,39:84:99:803,0,1013 1 103354138 . A G 972.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.574;CNN_1D=1.739;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=1.088;SOR=0.611 GT:AD:DP:GQ:PL 0/1:31,39:70:99:980,0,681 1 103354428 . A G 1703.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;CNN_1D=-0.084;DP=110;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=0.570;SOR=0.512 GT:AD:DP:GQ:PL 0/1:43,67:110:99:1711,0,882 1 103379918 . G A 742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.101;CNN_1D=3.136;DP=45;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.50;ReadPosRankSum=0.244;SOR=0.489 GT:AD:DP:GQ:PL 0/1:12,33:45:99:750,0,235 1 103496805 . GA G 788.68 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;CNN_1D=-0.036;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.24;ReadPosRankSum=-0.778;SOR=0.532 GT:AD:DP:GQ:PL 0/1:5,36:41:10:796,0,10 1 104076462 . C T 1088.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.416;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.22;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1102,108,0 1 104114358 . G A 958.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;CNN_1D=-9.473;DP=199;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=49.88;MQRankSum=0.330;QD=4.82;ReadPosRankSum=0.067;SOR=0.600 GT:AD:DP:GQ:PL 0/1:140,59:199:99:966,0,3140 1 104117921 . G A 1167.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;CNN_1D=-5.702;DP=189;ExcessHet=3.0103;FS=2.749;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=1.993;QD=6.28;ReadPosRankSum=1.467;SOR=0.625 GT:AD:DP:GQ:PL 0/1:126,60:186:99:1175,0,2982 1 104160069 . T C 763.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.276;CNN_1D=-5.183;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=37.81;MQRankSum=1.325;QD=8.12;ReadPosRankSum=-1.063;SOR=0.683 GT:AD:DP:GQ:PL 0/1:70,24:94:99:771,0,3975 1 104160076 . T G 773.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;CNN_1D=-5.859;DP=109;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=38.17;MQRankSum=0.867;QD=7.10;ReadPosRankSum=-0.718;SOR=0.581 GT:AD:DP:GQ:PL 0/1:83,26:109:99:781,0,4221 1 104166496 . T C 2276.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.588;CNN_1D=-1.067;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQRankSum=-0.064;QD=27.10;ReadPosRankSum=0.825;SOR=0.767 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2290,215,0 1 107979396 . A C 3614.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.038;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.15;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3628,372,0 1 108160260 . GA G 1838.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.379;CNN_1D=1.701;DP=82;ExcessHet=3.0103;FS=4.767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=24.51;ReadPosRankSum=-1.109;SOR=0.542 GT:AD:DP:GQ:PL 1/1:4,71:75:99:1852,118,0 1 108307727 . T A 1643.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.859;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.93;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1657,183,0 1 108313258 . C T 1101.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.644;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.23;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1115,117,0 1 108742632 . C T 2393.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;CNN_1D=-9.744;DP=238;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.460;SOR=0.771 GT:AD:DP:GQ:PL 0/1:121,115:236:99:2401,0,2752 1 109001689 . G A 63.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;CNN_1D=-3.822;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=27.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=0.414;SOR=0.368 GT:AD:DP:GQ:PL 0/1:5,3:8:71:71,0,135 1 109242056 . G A 1556.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.293;CNN_1D=-3.188;DP=143;ExcessHet=3.0103;FS=3.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-0.517;SOR=0.831 GT:AD:DP:GQ:PL 0/1:74,69:143:99:1564,0,1943 1 109261509 . A G 1657.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;CNN_1D=-5.796;DP=174;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-0.107;SOR=0.557 GT:AD:DP:GQ:PL 0/1:94,80:174:99:1665,0,2210 1 109265029 . G T 4168.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.043;CNN_1D=0.251;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.24;ReadPosRankSum=0.544;SOR=0.256 GT:AD:DP:GQ:PL 1/1:1,152:153:99:4182,424,0 1 109268573 . T C 2678.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;CNN_1D=-4.237;DP=183;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=0.419;SOR=0.808 GT:AD:DP:GQ:PL 0/1:73,110:183:99:2686,0,1648 1 109273456 . A G 1492.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;CNN_1D=-2.173;DP=124;ExcessHet=3.0103;FS=4.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=-0.203;SOR=0.568 GT:AD:DP:GQ:PL 0/1:56,67:123:99:1500,0,1246 1 109289353 . C G 3885.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.881;CNN_1D=0.091;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.57;ReadPosRankSum=0.624;SOR=0.921 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3899,359,0 1 109338861 . G C 340.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;CNN_1D=0.763;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=-0.011;SOR=0.776 GT:AD:DP:GQ:PL 0/1:27,19:46:99:348,0,625 1 109366286 . C T 774.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;CNN_1D=-0.180;DP=71;ExcessHet=3.0103;FS=3.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=0.040;SOR=1.194 GT:AD:DP:GQ:PL 0/1:37,34:71:99:782,0,870 1 109369915 . G T 2832.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.339;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.23;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2846,312,0 1 109377157 . TA T 1425.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;CNN_1D=0.725;DP=86;ExcessHet=3.0103;FS=3.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.53;ReadPosRankSum=1.620;SOR=1.406 GT:AD:DP:GQ:PL 0/1:11,62:73:57:1433,0,57 1 109377159 . A G 546.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;CNN_1D=-2.535;DP=83;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=0.805;SOR=0.871 GT:AD:DP:GQ:PL 0/1:44,32:76:99:554,0,1309 1 109385750 . T C 1392.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;CNN_1D=-2.773;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.304;SOR=0.719 GT:AD:DP:GQ:PL 0/1:64,65:129:99:1400,0,1424 1 109394593 . A C 1074.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;CNN_1D=-4.109;DP=140;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-1.455;SOR=0.571 GT:AD:DP:GQ:PL 0/1:90,50:140:99:1082,0,2084 1 109394609 . T A 980.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;CNN_1D=-4.262;DP=131;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-2.722;SOR=0.547 GT:AD:DP:GQ:PL 0/1:82,48:130:99:988,0,1843 1 109394978 . G A 1381.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;CNN_1D=-3.352;DP=138;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=1.740;SOR=0.606 GT:AD:DP:GQ:PL 0/1:76,62:138:99:1389,0,1726 1 109395105 . C T 3787.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.768;CNN_1D=2.464;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.30;ReadPosRankSum=0.818;SOR=0.236 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3801,337,0 1 109461341 . C T 1538.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;CNN_1D=-4.958;DP=153;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=1.350;SOR=0.847 GT:AD:DP:GQ:PL 0/1:80,73:153:99:1546,0,1754 1 109465165 . ACTT A 1150.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;CNN_1D=-0.381;DP=81;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-0.657;SOR=0.982 GT:AD:DP:GQ:PL 0/1:44,31:75:99:1158,0,2102 1 109479978 . G T 1435.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;CNN_1D=-2.295;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=1.232;SOR=0.706 GT:AD:DP:GQ:PL 0/1:65,63:128:99:1443,0,1602 1 109486196 . A G 2924.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.207;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.07;SOR=0.730 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2938,323,0 1 109486240 . TA T 2568.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.141;CNN_1D=2.563;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=33.35;ReadPosRankSum=1.080;SOR=0.268 GT:AD:DP:GQ:PL 1/1:1,76:77:99:2582,198,0 1 109656946 . T C 3327.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.032;CNN_1D=0.623;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=24.83;ReadPosRankSum=0.880;SOR=0.459 GT:AD:DP:GQ:PL 1/1:3,131:134:99:3341,314,0 1 109704618 . A G 2082.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.252;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.04;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2096,230,0 1 109735298 . T C 2172.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;CNN_1D=-5.854;DP=180;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=-1.830;SOR=0.773 GT:AD:DP:GQ:PL 0/1:88,92:180:99:2180,0,2049 1 109735416 . A C 2217.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.293;CNN_1D=-4.814;DP=180;ExcessHet=3.0103;FS=7.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=1.309;SOR=0.414 GT:AD:DP:GQ:PL 0/1:89,91:180:99:2225,0,2031 1 109735504 . T C 1055.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.200;CNN_1D=0.555;DP=81;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=0.785;SOR=0.906 GT:AD:DP:GQ:PL 0/1:42,39:81:99:1063,0,970 1 109737063 . C T 1930.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;CNN_1D=-6.686;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.483;SOR=0.654 GT:AD:DP:GQ:PL 0/1:101,90:191:99:1938,0,2255 1 109737090 . G A 2305.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;CNN_1D=-9.356;DP=236;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-0.509;SOR=0.738 GT:AD:DP:GQ:PL 0/1:127,109:236:99:2313,0,2723 1 109737132 . T C 2419.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;CNN_1D=-9.325;DP=245;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=0.712;SOR=0.782 GT:AD:DP:GQ:PL 0/1:129,115:244:99:2427,0,2784 1 109737172 . C T 1842.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;CNN_1D=-6.118;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=1.587;SOR=0.649 GT:AD:DP:GQ:PL 0/1:97,83:180:99:1850,0,2251 1 109742485 . G A 826.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;CNN_1D=-0.260;DP=84;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.424;SOR=0.551 GT:AD:DP:GQ:PL 0/1:50,34:84:99:834,0,1145 1 109745618 . T C 3380.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.966;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.48;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3394,369,0 1 109771063 . T C 992.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;CNN_1D=0.068;DP=86;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.559;SOR=0.650 GT:AD:DP:GQ:PL 0/1:40,45:85:99:1000,0,869 1 109780501 . C T 2135.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;CNN_1D=-4.458;DP=162;ExcessHet=3.0103;FS=8.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=-1.850;SOR=0.682 GT:AD:DP:GQ:PL 0/1:70,92:162:99:2143,0,1473 1 109792735 . A ACGC 1984.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;CNN_1D=0.610;DP=88;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.81;ReadPosRankSum=1.582;SOR=0.516 GT:AD:DP:GQ:PL 0/1:36,51:87:99:1992,0,1399 1 109794252 . T C 2599.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;CNN_1D=-7.592;DP=218;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-0.880;SOR=0.806 GT:AD:DP:GQ:PL 0/1:108,110:218:99:2607,0,2485 1 109795026 . T C 1798.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;CNN_1D=-5.288;DP=167;ExcessHet=3.0103;FS=1.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-0.283;SOR=0.854 GT:AD:DP:GQ:PL 0/1:92,75:167:99:1806,0,2310 1 109795608 . T C 1863.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;CNN_1D=-3.317;DP=152;ExcessHet=3.0103;FS=7.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=1.254;SOR=0.815 GT:AD:DP:GQ:PL 0/1:79,73:152:99:1871,0,1944 1 109815252 . A G 548.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.111;CNN_1D=1.267;DP=55;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=0.008;SOR=0.649 GT:AD:DP:GQ:PL 0/1:28,27:55:99:556,0,722 1 109816176 . A C 2236.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.088;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.67;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2250,234,0 1 109838918 . C T 3785.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.359;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.43;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3799,414,0 1 109839433 . A G 2345.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.713;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.25;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2359,249,0 1 109940503 . G C 599.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.794;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.23;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,22:22:66:613,66,0 1 110201699 . T C 7160.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.166;CNN_1D=-5.837;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.06;MQRankSum=-1.032;QD=29.34;ReadPosRankSum=-0.826;SOR=0.477 GT:AD:DP:GQ:PL 1/1:5,239:244:99:7174,599,0 1 110210780 . C G 4569.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;CNN_1D=-1.472;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.96;MQRankSum=-0.118;QD=27.86;ReadPosRankSum=1.821;SOR=0.823 GT:AD:DP:GQ:PL 1/1:2,162:164:99:4583,440,0 1 110211956 . C T 2367.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;CNN_1D=-11.835;DP=225;ExcessHet=3.0103;FS=4.573;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-3.446;QD=10.62;ReadPosRankSum=1.910;SOR=0.924 GT:AD:DP:GQ:PL 0/1:112,111:223:99:2375,0,2406 1 110279701 . C T 1162.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;CNN_1D=-0.490;DP=95;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=0.727;SOR=0.789 GT:AD:DP:GQ:PL 0/1:42,53:95:99:1170,0,883 1 110295772 . T C 4207.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.636;CNN_1D=-2.022;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.97;ReadPosRankSum=-0.023;SOR=0.693 GT:AD:DP:GQ:PL 1/1:2,160:162:99:4221,435,0 1 110299691 . G A 2060.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.394;CNN_1D=-5.146;DP=172;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=-0.196;SOR=0.878 GT:AD:DP:GQ:PL 0/1:82,90:172:99:2068,0,2008 1 110300441 . G A 1613.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;CNN_1D=-2.640;DP=137;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=2.257;SOR=0.509 GT:AD:DP:GQ:PL 0/1:68,69:137:99:1621,0,1626 1 110301260 . C T 1056.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;CNN_1D=-2.411;DP=119;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=2.235;SOR=0.485 GT:AD:DP:GQ:PL 0/1:69,50:119:99:1064,0,1725 1 110466338 . C A 2937.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;CNN_1D=-9.928;DP=262;ExcessHet=3.0103;FS=4.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.992;SOR=0.986 GT:AD:DP:GQ:PL 0/1:140,122:262:99:2945,0,3225 1 110466709 . T C 4143.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.339;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.18;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4157,426,0 1 110709719 . T C 1485.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;CNN_1D=0.639;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.08;ReadPosRankSum=-1.699;SOR=0.662 GT:AD:DP:GQ:PL 0/1:48,39:87:99:1493,0,2294 1 110709720 . G A 1485.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;CNN_1D=0.312;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.08;ReadPosRankSum=-1.618;SOR=0.662 GT:AD:DP:GQ:PL 0/1:48,39:87:99:1493,0,2294 1 110738296 . G A 4187.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.381;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.29;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4201,444,0 1 110740688 . C T 2120.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.463;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.12;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2134,198,0 1 110766454 . G A 1842.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;CNN_1D=-5.945;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.282;SOR=0.715 GT:AD:DP:GQ:PL 0/1:98,86:184:99:1850,0,2151 1 110882444 . A G 5493.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.012;CNN_1D=-2.848;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.47;ReadPosRankSum=-0.384;SOR=0.500 GT:AD:DP:GQ:PL 1/1:5,195:200:99:5507,440,0 1 110883569 . A T 2397.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;CNN_1D=-5.637;DP=182;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=-0.810;SOR=0.886 GT:AD:DP:GQ:PL 0/1:83,98:181:99:2405,0,1962 1 110921824 . T C 1395.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;CNN_1D=-4.790;DP=159;ExcessHet=3.0103;FS=3.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.753;SOR=0.631 GT:AD:DP:GQ:PL 0/1:93,65:158:99:1403,0,2071 1 110924353 . G A 1304.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;CNN_1D=-2.087;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=3.209;SOR=0.669 GT:AD:DP:GQ:PL 0/1:67,62:129:99:1312,0,1362 1 110950277 . G A 2271.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;CNN_1D=-5.443;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=1.082;SOR=0.735 GT:AD:DP:GQ:PL 0/1:97,97:194:99:2279,0,2122 1 110950439 . C T 1296.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;CNN_1D=-2.696;DP=119;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=1.092;SOR=1.018 GT:AD:DP:GQ:PL 0/1:68,50:118:99:1304,0,1781 1 110998854 . G A 754.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;CNN_1D=0.079;DP=71;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-0.138;SOR=0.880 GT:AD:DP:GQ:PL 0/1:37,34:71:99:762,0,882 1 111060669 . T C 1479.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;CNN_1D=-1.356;DP=108;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=0.432;SOR=0.713 GT:AD:DP:GQ:PL 0/1:50,58:108:99:1487,0,1111 1 111061011 . C A 1302.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.321;CNN_1D=-2.578;DP=131;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.314;SOR=0.776 GT:AD:DP:GQ:PL 0/1:73,57:130:99:1310,0,2003 1 111061062 . T C 1438.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;CNN_1D=-4.302;DP=142;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-1.150;SOR=0.768 GT:AD:DP:GQ:PL 0/1:79,63:142:99:1446,0,1853 1 111726213 . A G 1233.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.802;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.62;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1247,117,0 1 111726869 . G A 1080.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;CNN_1D=-0.388;DP=92;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=1.008;SOR=0.844 GT:AD:DP:GQ:PL 0/1:42,50:92:99:1088,0,830 1 111773568 . G C 1208.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;CNN_1D=-1.749;DP=106;ExcessHet=3.0103;FS=3.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=1.053;SOR=1.068 GT:AD:DP:GQ:PL 0/1:54,52:106:99:1216,0,1339 1 111778325 . C T 582.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;CNN_1D=0.815;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-1.911;SOR=0.665 GT:AD:DP:GQ:PL 0/1:34,29:63:99:590,0,831 1 111783982 . C A 624.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;CNN_1D=3.182;DP=46;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=2.032;SOR=0.495 GT:AD:DP:GQ:PL 0/1:16,30:46:99:632,0,312 1 111783996 . A G 1435.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.381;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.08;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1449,159,0 1 111857154 . T C 2128.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.446;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.76;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2142,222,0 1 111857208 . G A 921.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;CNN_1D=-0.924;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=-0.712;SOR=0.623 GT:AD:DP:GQ:PL 0/1:48,44:92:99:929,0,1033 1 111861841 . A G 2862.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.731;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.79;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2876,309,0 1 111861974 . T C 1449.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;CNN_1D=-3.616;DP=138;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.680;SOR=0.561 GT:AD:DP:GQ:PL 0/1:75,63:138:99:1457,0,1746 1 111862074 . C T 1083.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;CNN_1D=-2.624;DP=111;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.059;SOR=0.826 GT:AD:DP:GQ:PL 0/1:59,52:111:99:1091,0,1290 1 111862952 . T G 4946.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.866;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4960,507,0 1 111893958 . A G 901.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;CNN_1D=-0.608;DP=91;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=1.883;SOR=0.747 GT:AD:DP:GQ:PL 0/1:47,44:91:99:909,0,972 1 111957097 . C G 1772.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.124;CNN_1D=3.784;DP=63;ExcessHet=3.0103;FS=2.609;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.13;ReadPosRankSum=0.000;SOR=0.326 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1786,110,0 1 111957501 . CTCACAGACTGATGACTCACAGGGG C 1633.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;CNN_1D=-12.114;DP=216;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.820;QD=8.64;ReadPosRankSum=-1.442;SOR=0.600 GT:AD:DP:GQ:PL 0/1:118,71:189:99:1641,0,5352 1 111957547 . GGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA G 2433.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;CNN_1D=-13.250;DP=240;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.025;QD=11.06;ReadPosRankSum=-5.172;SOR=0.724 GT:AD:DP:GQ:PL 0/1:148,72:220:99:2441,0,6575 1 111957688 . T C 2728.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;CNN_1D=-9.319;DP=238;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-1.607;SOR=0.762 GT:AD:DP:GQ:PL 0/1:119,119:238:99:2736,0,2717 1 111957693 . A G 8947.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.994;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,249:249:99:8961,748,0 1 111962256 . G T 1163.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;CNN_1D=1.004;DP=77;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=0.526;SOR=0.984 GT:AD:DP:GQ:PL 0/1:29,48:77:99:1171,0,563 1 111964262 . G A 1993.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;CNN_1D=-5.557;DP=179;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.442;SOR=0.857 GT:AD:DP:GQ:PL 0/1:89,90:179:99:2001,0,2092 1 111969719 . A G 1470.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;CNN_1D=-2.208;DP=120;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-1.705;SOR=0.799 GT:AD:DP:GQ:PL 0/1:58,62:120:99:1478,0,1334 1 111991768 . G A 2098.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;CNN_1D=-4.582;DP=156;ExcessHet=3.0103;FS=4.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=0.428;SOR=0.679 GT:AD:DP:GQ:PL 0/1:67,88:155:99:2106,0,1508 1 112042632 . A G 1210.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;CNN_1D=-2.081;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.911;SOR=0.710 GT:AD:DP:GQ:PL 0/1:54,50:104:99:1218,0,1433 1 112269872 . G A 1892.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;CNN_1D=-5.334;DP=178;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-0.143;SOR=0.622 GT:AD:DP:GQ:PL 0/1:95,83:178:99:1900,0,2243 1 112298582 . A G 486.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;CNN_1D=0.737;DP=62;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-0.103;SOR=0.380 GT:AD:DP:GQ:PL 0/1:40,22:62:99:494,0,964 1 112298829 . T C 1241.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.784;CNN_1D=3.451;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.40;ReadPosRankSum=0.475;SOR=0.737 GT:AD:DP:GQ:PL 1/1:2,45:47:90:1255,90,0 1 112305406 . TA T 94.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.135;CNN_1D=-2.284;DP=77;ExcessHet=3.0103;FS=3.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=1.107;SOR=1.431 GT:AD:DP:GQ:PL 0/1:56,15:71:99:102,0,1085 1 112308953 . T C 4242.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;CNN_1D=0.338;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.91;ReadPosRankSum=0.537;SOR=0.476 GT:AD:DP:GQ:PL 1/1:5,147:152:99:4256,319,0 1 112308972 . G A 4224.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.342;CNN_1D=-0.203;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.79;ReadPosRankSum=-0.320;SOR=0.476 GT:AD:DP:GQ:PL 1/1:5,147:152:99:4238,325,0 1 112991698 . T C 2999.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.857;CNN_1D=1.633;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.51;ReadPosRankSum=-1.457;SOR=0.830 GT:AD:DP:GQ:PL 1/1:2,107:109:99:3013,277,0 1 112999227 . G A 6417.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.868;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.00;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6431,621,0 1 113063125 . A G 4923.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.198;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.66;SOR=1.053 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4937,497,0 1 113098534 . C T 2463.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;CNN_1D=1.913;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=24.88;ReadPosRankSum=-1.008;SOR=0.714 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2477,247,0 1 113255389 . C T 5354.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.696;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.10;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5368,551,0 1 113657092 . A C 2401.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.184;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.28;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2415,246,0 1 113659065 . ACT A 2180.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.890;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.41;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,49:49:99:2194,148,0 1 114196495 . A G 875.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;CNN_1D=-1.275;DP=103;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=1.606;SOR=0.601 GT:AD:DP:GQ:PL 0/1:59,43:102:99:883,0,1318 1 114240319 . T TA 559.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;CNN_1D=-2.578;DP=74;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-1.178;SOR=0.943 GT:AD:DP:GQ:PL 0/1:51,21:72:99:567,0,1668 1 114355011 . C T 906.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;CNN_1D=-2.322;DP=102;ExcessHet=3.0103;FS=2.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=1.093;SOR=0.991 GT:AD:DP:GQ:PL 0/1:60,41:101:99:914,0,1357 1 114372332 . TA T 393.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;CNN_1D=-0.033;DP=54;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-0.099;SOR=0.465 GT:AD:DP:GQ:PL 0/1:24,22:46:99:401,0,455 1 114377568 . A G 2392.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.816;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.88;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2406,267,0 1 114424601 . C T 2339.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.259;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.99;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2353,234,0 1 114448389 . C T 654.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;CNN_1D=1.888;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=0.420;SOR=0.559 GT:AD:DP:GQ:PL 0/1:23,31:54:99:662,0,523 1 114449662 . T C 2036.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;CNN_1D=-5.099;DP=174;ExcessHet=3.0103;FS=1.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.760;SOR=0.691 GT:AD:DP:GQ:PL 0/1:78,96:174:99:2044,0,1559 1 114515717 . G A 4850.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.868;CNN_1D=-1.847;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.25;ReadPosRankSum=-1.779;SOR=0.564 GT:AD:DP:GQ:PL 1/1:5,173:178:99:4864,399,0 1 114680310 . G A 1838.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191;CNN_1D=-6.634;DP=192;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=0.517;SOR=0.795 GT:AD:DP:GQ:PL 0/1:107,85:192:99:1846,0,2674 1 114948281 . A G 4894.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.519;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.79;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4908,510,0 1 114973429 . T C 563.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;CNN_1D=1.107;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.616;SOR=0.830 GT:AD:DP:GQ:PL 0/1:29,26:55:99:571,0,689 1 115168097 . T C 1651.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;CNN_1D=-2.126;DP=128;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=1.073;SOR=0.763 GT:AD:DP:GQ:PL 0/1:65,63:128:99:1659,0,1614 1 115280193 . C CA 37.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;CNN_1D=-2.228;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.280;SOR=0.777 GT:AD:DP:GQ:PL 0/1:57,11:68:45:45,0,1259 1 115399884 . C G 258.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;CNN_1D=0.376;DP=43;ExcessHet=3.0103;FS=4.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-0.519;SOR=1.455 GT:AD:DP:GQ:PL 0/1:29,14:43:99:266,0,681 1 115576023 . A G 3371.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.874;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.31;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3385,345,0 1 115601528 . C G 978.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;CNN_1D=-3.028;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=2.270;SOR=0.665 GT:AD:DP:GQ:PL 0/1:69,46:115:99:986,0,1705 1 115604798 . C T 1183.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306;CNN_1D=-3.186;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=0.168;SOR=0.665 GT:AD:DP:GQ:PL 0/1:63,62:125:99:1191,0,1412 1 115829313 . G A 1766.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906;CNN_1D=-4.718;DP=149;ExcessHet=3.0103;FS=7.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-2.072;SOR=1.232 GT:AD:DP:GQ:PL 0/1:73,76:149:99:1774,0,1910 1 116243877 . G A 907.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;CNN_1D=-2.010;DP=98;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-1.217;SOR=0.970 GT:AD:DP:GQ:PL 0/1:57,40:97:99:915,0,1226 1 116268178 . GAAA G,GA 816.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.279;CNN_1D=-3.156;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.93;ReadPosRankSum=-1.505;SOR=0.693 GT:AD:DP:GQ:PL 1/2:4,14,21:39:99:833,301,387,130,0,117 1 116283343 . A G 787.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.840;CNN_1D=-1.926;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-0.225;SOR=0.736 GT:AD:DP:GQ:PL 0/1:56,34:90:99:795,0,1256 1 116310967 . T C 1404.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;CNN_1D=-3.365;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.565;SOR=0.719 GT:AD:DP:GQ:PL 0/1:77,64:141:99:1412,0,1708 1 116569530 . G C 1394.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.314;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.04;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1408,144,0 1 116666710 . C T 418.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;CNN_1D=1.537;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-1.622;SOR=0.693 GT:AD:DP:GQ:PL 0/1:19,19:38:99:426,0,500 1 116670774 . A G 1944.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.396;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.91;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1958,195,0 1 116675909 . A G 1294.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;CNN_1D=-1.585;DP=118;ExcessHet=3.0103;FS=3.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.666;SOR=0.778 GT:AD:DP:GQ:PL 0/1:60,57:117:99:1302,0,1340 1 117122285 . G GTCC 1033.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;CNN_1D=0.449;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.27;ReadPosRankSum=1.508;SOR=1.157 GT:AD:DP:GQ:PL 0/1:13,38:51:99:1041,0,294 1 117122288 . G C 2622.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.132;CNN_1D=1.479;DP=80;ExcessHet=3.0103;FS=3.628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.51;ReadPosRankSum=1.846;SOR=2.352 GT:AD:DP:GQ:PL 1/1:2,70:72:99:2880,167,0 1 117142613 . C T 1812.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;CNN_1D=-14.514;DP=218;ExcessHet=3.0103;FS=10.508;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-8.310;QD=8.31;ReadPosRankSum=2.000;SOR=1.300 GT:AD:DP:GQ:PL 0/1:135,83:218:99:1820,0,3179 1 117142641 . G A 2267.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;CNN_1D=-16.031;DP=264;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-10.504;QD=8.62;ReadPosRankSum=-0.060;SOR=0.875 GT:AD:DP:GQ:PL 0/1:152,111:263:99:2275,0,3412 1 117142700 . C A 1511.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;CNN_1D=-16.004;DP=279;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-7.889;QD=5.44;ReadPosRankSum=2.423;SOR=0.538 GT:AD:DP:GQ:PL 0/1:196,82:278:99:1519,0,5521 1 117142707 . G A 368.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.394;CNN_1D=-16.099;DP=275;ExcessHet=3.0103;FS=15.089;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=-8.100;QD=1.35;ReadPosRankSum=-1.960;SOR=1.780 GT:AD:DP:GQ:PL 0/1:238,36:274:99:376,0,7272 1 117142736 . A G 3130.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.976;CNN_1D=-16.115;DP=300;ExcessHet=3.0103;FS=3.179;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-13.475;QD=10.47;ReadPosRankSum=0.822;SOR=0.533 GT:AD:DP:GQ:PL 0/1:175,124:299:99:3138,0,4189 1 117142751 . C A 1437.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;CNN_1D=-15.953;DP=304;ExcessHet=3.0103;FS=4.378;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-6.509;QD=4.74;ReadPosRankSum=0.531;SOR=0.530 GT:AD:DP:GQ:PL 0/1:222,81:303:99:1445,0,5720 1 117142855 . C T 1333.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;CNN_1D=-16.118;DP=353;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-8.944;QD=3.82;ReadPosRankSum=0.404;SOR=0.790 GT:AD:DP:GQ:PL 0/1:266,83:349:99:1341,0,6367 1 117142868 . C T 5811.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;CNN_1D=-15.826;DP=321;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-7.160;QD=18.33;ReadPosRankSum=1.606;SOR=0.866 GT:AD:DP:GQ:PL 0/1:166,151:317:99:5819,0,7515 1 117142869 . A G 5811.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;CNN_1D=-15.901;DP=321;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-7.160;QD=18.33;ReadPosRankSum=1.638;SOR=0.866 GT:AD:DP:GQ:PL 0/1:166,151:317:99:5819,0,7515 1 117142977 . A C 845.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.212;CNN_1D=-8.316;DP=135;ExcessHet=3.0103;FS=4.245;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-4.444;QD=7.48;ReadPosRankSum=-0.643;SOR=1.177 GT:AD:DP:GQ:PL 0/1:78,35:113:99:853,0,2078 1 117146504 . G A 821.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.929;CNN_1D=-15.928;DP=213;ExcessHet=3.0103;FS=8.930;MLEAC=1;MLEAF=0.500;MQ=55.92;MQRankSum=-12.142;QD=3.88;ReadPosRankSum=1.903;SOR=0.662 GT:AD:DP:GQ:PL 0/1:153,59:212:99:829,0,3906 1 117146545 . C A 344.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;CNN_1D=-15.349;DP=196;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-9.442;QD=1.76;ReadPosRankSum=0.621;SOR=0.533 GT:AD:DP:GQ:PL 0/1:158,38:196:99:352,0,4103 1 117146563 . G A 1467.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.560;CNN_1D=-14.605;DP=180;ExcessHet=3.0103;FS=2.992;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-12.000;QD=8.15;ReadPosRankSum=-0.437;SOR=0.475 GT:AD:DP:GQ:PL 0/1:131,49:180:99:1475,0,5541 1 117146571 . A G 1324.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;CNN_1D=-15.135;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-11.931;QD=7.93;ReadPosRankSum=0.077;SOR=0.713 GT:AD:DP:GQ:PL 0/1:127,40:167:99:1332,0,5413 1 117146592 . C G 309.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.133;CNN_1D=-15.334;DP=151;ExcessHet=3.0103;FS=1.679;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-9.759;QD=2.05;ReadPosRankSum=-0.285;SOR=0.871 GT:AD:DP:GQ:PL 0/1:123,28:151:99:317,0,3264 1 117146629 . T C 43.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;CNN_1D=-11.380;DP=107;ExcessHet=3.0103;FS=6.310;MLEAC=1;MLEAF=0.500;MQ=54.08;MQRankSum=-6.170;QD=0.41;ReadPosRankSum=-2.612;SOR=1.602 GT:AD:DP:GQ:PL 0/1:95,12:107:51:51,0,2427 1 117150617 . A G 604.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;CNN_1D=-15.802;DP=193;ExcessHet=3.0103;FS=4.097;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-11.382;QD=3.13;ReadPosRankSum=3.765;SOR=1.055 GT:AD:DP:GQ:PL 0/1:150,43:193:99:612,0,3861 1 117150628 . G C 463.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;CNN_1D=-15.760;DP=189;ExcessHet=3.0103;FS=6.764;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-11.358;QD=2.45;ReadPosRankSum=3.919;SOR=0.948 GT:AD:DP:GQ:PL 0/1:151,38:189:99:471,0,3861 1 117150736 . C G 355.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;CNN_1D=-16.032;DP=194;ExcessHet=3.0103;FS=17.286;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-10.594;QD=1.83;ReadPosRankSum=0.122;SOR=2.030 GT:AD:DP:GQ:PL 0/1:163,31:194:99:363,0,4381 1 117150928 . C T 1781.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;CNN_1D=-14.408;DP=183;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-11.106;QD=9.74;ReadPosRankSum=-0.516;SOR=0.836 GT:AD:DP:GQ:PL 0/1:128,55:183:99:1789,0,6193 1 117150933 . G A 1675.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;CNN_1D=-13.989;DP=168;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-11.089;QD=9.97;ReadPosRankSum=0.659;SOR=0.872 GT:AD:DP:GQ:PL 0/1:121,47:168:99:1683,0,6069 1 117156418 . G A 182.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;CNN_1D=-12.291;DP=175;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-4.988;QD=1.04;ReadPosRankSum=-1.614;SOR=0.813 GT:AD:DP:GQ:PL 0/1:151,24:175:99:190,0,3737 1 117156459 . C T 1574.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;CNN_1D=-15.942;DP=211;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-11.371;QD=7.46;ReadPosRankSum=0.137;SOR=0.651 GT:AD:DP:GQ:PL 0/1:131,80:211:99:1582,0,3419 1 117156490 . T C 1559.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;CNN_1D=-16.061;DP=230;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-13.002;QD=6.81;ReadPosRankSum=2.820;SOR=0.763 GT:AD:DP:GQ:PL 0/1:148,81:229:99:1567,0,3567 1 117156584 . T C 1224.64 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;CNN_1D=-16.012;DP=189;ExcessHet=3.0103;FS=11.384;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-13.322;QD=6.48;ReadPosRankSum=2.011;SOR=1.565 GT:AD:DP:GQ:PL 0/1:149,40:189:99:1232,0,6677 1 117156585 . G A 1224.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;CNN_1D=-15.990;DP=188;ExcessHet=3.0103;FS=11.384;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-13.322;QD=6.51;ReadPosRankSum=1.961;SOR=1.565 GT:AD:DP:GQ:PL 0/1:148,40:188:99:1232,0,6677 1 117156600 . T C 425.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;CNN_1D=-16.041;DP=173;ExcessHet=3.0103;FS=19.563;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-13.020;QD=2.46;ReadPosRankSum=0.916;SOR=2.185 GT:AD:DP:GQ:PL 0/1:140,33:173:99:433,0,3693 1 117158898 . C T 427.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;CNN_1D=-16.024;DP=203;ExcessHet=3.0103;FS=4.842;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-8.768;QD=2.11;ReadPosRankSum=-1.349;SOR=1.136 GT:AD:DP:GQ:PL 0/1:173,30:203:99:435,0,4439 1 117158909 . C T 630.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;CNN_1D=-16.090;DP=219;ExcessHet=3.0103;FS=5.377;MLEAC=1;MLEAF=0.500;MQ=46.33;MQRankSum=-9.838;QD=2.89;ReadPosRankSum=-0.979;SOR=1.061 GT:AD:DP:GQ:PL 0/1:179,39:218:99:638,0,4346 1 117158934 . C T 1021.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840;CNN_1D=-16.107;DP=230;ExcessHet=3.0103;FS=6.566;MLEAC=1;MLEAF=0.500;MQ=44.97;MQRankSum=-10.532;QD=4.44;ReadPosRankSum=-0.598;SOR=0.704 GT:AD:DP:GQ:PL 0/1:173,57:230:99:1029,0,4073 1 117158972 . A G 1352.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.932;CNN_1D=-16.110;DP=244;ExcessHet=3.0103;FS=5.538;MLEAC=1;MLEAF=0.500;MQ=45.86;MQRankSum=-11.756;QD=5.54;ReadPosRankSum=1.384;SOR=0.427 GT:AD:DP:GQ:PL 0/1:159,85:244:99:1360,0,3820 1 117159024 . C T 1270.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.433;CNN_1D=-15.116;DP=178;ExcessHet=3.0103;FS=6.720;MLEAC=1;MLEAF=0.500;MQ=48.31;MQRankSum=-10.312;QD=7.14;ReadPosRankSum=2.386;SOR=0.365 GT:AD:DP:GQ:PL 0/1:108,70:178:99:1278,0,2510 1 117487710 . A G 4261.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.204;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.38;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,95:95:99:4275,286,0 1 117487711 . T A 4261.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.002;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.03;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,95:95:99:4275,286,0 1 117529458 . G A 4187.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.743;CNN_1D=-0.358;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.19;ReadPosRankSum=-0.471;SOR=0.803 GT:AD:DP:GQ:PL 1/1:2,152:154:99:4201,412,0 1 117554421 . A G 2898.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;CNN_1D=-8.599;DP=232;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=-1.322;SOR=0.870 GT:AD:DP:GQ:PL 0/1:107,124:231:99:2906,0,2485 1 117559726 . A G 2124.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.793;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.23;SOR=1.040 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2138,234,0 1 117560818 . A G 1518.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.533;CNN_1D=-2.885;DP=136;ExcessHet=3.0103;FS=2.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=1.879;SOR=0.911 GT:AD:DP:GQ:PL 0/1:72,63:135:99:1526,0,1621 1 117560929 . C A 2683.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;CNN_1D=-5.582;DP=199;ExcessHet=3.0103;FS=3.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=1.361;SOR=0.506 GT:AD:DP:GQ:PL 0/1:89,110:199:99:2691,0,2079 1 117602960 . C A 4783.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;CNN_1D=-2.641;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.04;ReadPosRankSum=2.538;SOR=0.501 GT:AD:DP:GQ:PL 1/1:3,188:191:99:4797,503,0 1 117603188 . G T 853.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.266;CNN_1D=0.171;DP=82;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-1.270;SOR=0.886 GT:AD:DP:GQ:PL 0/1:44,38:82:99:861,0,1171 1 117617705 . A G 1989.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.436;CNN_1D=-5.408;DP=186;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=2.138;SOR=0.562 GT:AD:DP:GQ:PL 0/1:96,87:183:99:1997,0,2073 1 117618067 . C T 1681.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;CNN_1D=-4.328;DP=153;ExcessHet=3.0103;FS=7.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.105;SOR=0.594 GT:AD:DP:GQ:PL 0/1:77,75:152:99:1689,0,1729 1 117690272 . G A 3338.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.177;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.05;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3352,356,0 1 118165973 . C T 2729.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;CNN_1D=-6.154;DP=211;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=0.678;SOR=0.623 GT:AD:DP:GQ:PL 0/1:98,113:211:99:2737,0,2152 1 118166096 . C T 2974.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;CNN_1D=-7.705;DP=234;ExcessHet=3.0103;FS=2.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=0.109;SOR=0.545 GT:AD:DP:GQ:PL 0/1:109,125:234:99:2982,0,2570 1 119427467 . A C 1482.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;CNN_1D=-5.611;DP=163;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=2.056;SOR=0.790 GT:AD:DP:GQ:PL 0/1:97,66:163:99:1490,0,2301 1 120057158 . C T 1134.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;CNN_1D=-6.784;DP=154;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-1.391;QD=7.37;ReadPosRankSum=-0.443;SOR=0.782 GT:AD:DP:GQ:PL 0/1:101,53:154:99:1142,0,2438 1 120057246 . C A 2894.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.465;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.46;QD=30.46;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2908,285,0 1 120165826 . C T 2862.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.236;CNN_1D=2.631;DP=104;ExcessHet=3.0103;FS=2.167;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.52;ReadPosRankSum=-0.923;SOR=0.506 GT:AD:DP:GQ:PL 1/1:3,101:104:99:2876,228,0 1 120166681 . G A 4511.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.684;CNN_1D=-0.155;DP=156;ExcessHet=3.0103;FS=3.066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.92;ReadPosRankSum=-1.244;SOR=0.285 GT:AD:DP:GQ:PL 1/1:1,155:156:99:4525,434,0 1 120285546 . G A 4248.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.188;CNN_1D=0.067;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.72;ReadPosRankSum=1.318;SOR=0.504 GT:AD:DP:GQ:PL 1/1:5,154:159:99:4262,337,0 1 120458004 . A T 2924.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;CNN_1D=-9.753;DP=251;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-1.564;SOR=0.748 GT:AD:DP:GQ:PL 0/1:127,122:249:99:2932,0,3044 1 120572547 . T C 115.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;CNN_1D=-3.235;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=34.12;MQRankSum=0.568;QD=6.42;ReadPosRankSum=-1.086;SOR=0.616 GT:AD:DP:GQ:PL 0/1:13,5:18:99:123,0,363 1 120572572 . C T 132.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.882;CNN_1D=-3.615;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=33.59;MQRankSum=0.270;QD=5.53;ReadPosRankSum=0.468;SOR=0.473 GT:AD:DP:GQ:PL 0/1:18,6:24:99:140,0,569 1 120611960 . C T 77.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;CNN_1D=-15.586;DP=171;ExcessHet=3.0103;FS=22.945;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-7.626;QD=0.49;ReadPosRankSum=-0.511;SOR=3.198 GT:AD:DP:GQ:PL 0/1:139,19:158:85:85,0,4447 1 120611964 . G C 794.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;CNN_1D=-9.194;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.86;MQRankSum=-1.743;QD=4.23;ReadPosRankSum=-1.229;SOR=0.712 GT:AD:DP:GQ:PL 0/1:141,47:188:99:802,0,3787 1 120612002 . CGG C 122.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;CNN_1D=-16.022;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.50;MQRankSum=-3.288;QD=0.48;ReadPosRankSum=1.357;SOR=0.730 GT:AD:DP:GQ:PL 0/1:222,31:253:99:130,0,9107 1 120612006 . G A 989.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;CNN_1D=-14.217;DP=258;ExcessHet=3.0103;FS=3.341;MLEAC=1;MLEAF=0.500;MQ=53.61;MQRankSum=-2.866;QD=3.84;ReadPosRankSum=-0.082;SOR=0.479 GT:AD:DP:GQ:PL 0/1:196,62:258:99:997,0,5223 1 121115958 . T C 409.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.491;CNN_1D=-15.326;DP=113;ExcessHet=3.0103;FS=21.700;MLEAC=1;MLEAF=0.500;MQ=44.49;MQRankSum=-7.460;QD=3.62;ReadPosRankSum=-5.098;SOR=2.620 GT:AD:DP:GQ:PL 0/1:92,21:113:99:417,0,2246 1 121116678 . C T 832.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.780;CNN_1D=-8.652;DP=186;ExcessHet=3.0103;FS=5.142;MLEAC=1;MLEAF=0.500;MQ=53.04;MQRankSum=0.401;QD=4.48;ReadPosRankSum=-1.418;SOR=1.130 GT:AD:DP:GQ:PL 0/1:140,46:186:99:840,0,6049 1 121116688 . A G 1826.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;CNN_1D=-10.412;DP=208;ExcessHet=3.0103;FS=5.463;MLEAC=1;MLEAF=0.500;MQ=52.98;MQRankSum=-1.379;QD=8.82;ReadPosRankSum=-3.126;SOR=1.123 GT:AD:DP:GQ:PL 0/1:146,61:207:99:1834,0,3308 1 121116733 . A G 1351.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;CNN_1D=-16.049;DP=270;ExcessHet=3.0103;FS=16.332;MLEAC=1;MLEAF=0.500;MQ=54.12;MQRankSum=-9.428;QD=5.01;ReadPosRankSum=4.636;SOR=0.945 GT:AD:DP:GQ:PL 0/1:190,80:270:99:1359,0,4644 1 121129557 . T C 491.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.377;CNN_1D=-10.765;DP=56;ExcessHet=3.0103;FS=34.869;MLEAC=1;MLEAF=0.500;MQ=26.90;MQRankSum=0.811;QD=8.78;ReadPosRankSum=-0.245;SOR=5.642 GT:AD:DP:GQ:PL 0/1:35,21:56:99:499,0,936 1 121129722 . G A 578.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;CNN_1D=-2.252;DP=60;ExcessHet=3.0103;FS=5.455;MLEAC=1;MLEAF=0.500;MQ=34.23;MQRankSum=2.050;QD=9.64;ReadPosRankSum=0.969;SOR=0.246 GT:AD:DP:GQ:PL 0/1:31,29:60:99:586,0,708 1 143767513 . A T 1652.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;CNN_1D=-16.118;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.30;MQRankSum=-2.972;QD=3.46;ReadPosRankSum=0.487;SOR=0.622 GT:AD:DP:GQ:PL 0/1:407,70:477:99:1660,0,16562 1 143767522 . A G 1664.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;CNN_1D=-16.118;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.88;MQRankSum=-2.827;QD=3.63;ReadPosRankSum=0.916;SOR=0.698 GT:AD:DP:GQ:PL 0/1:391,67:458:99:1672,0,16183 1 143767547 . G A 393.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;CNN_1D=-16.115;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.45;MQRankSum=-1.183;QD=0.96;ReadPosRankSum=2.559;SOR=0.676 GT:AD:DP:GQ:PL 0/1:351,58:409:99:401,0,8865 1 143767643 . T C 1698.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.399;CNN_1D=-16.118;DP=275;ExcessHet=3.0103;FS=7.321;MLEAC=1;MLEAF=0.500;MQ=43.99;MQRankSum=-13.074;QD=6.18;ReadPosRankSum=0.016;SOR=0.947 GT:AD:DP:GQ:PL 0/1:196,79:275:99:1706,0,4634 1 143767778 . T A 2168.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;CNN_1D=-16.104;DP=241;ExcessHet=3.0103;FS=4.512;MLEAC=1;MLEAF=0.500;MQ=48.82;MQRankSum=-13.282;QD=9.00;ReadPosRankSum=4.629;SOR=0.996 GT:AD:DP:GQ:PL 0/1:138,103:241:99:2176,0,3121 1 143767833 . T C 964.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.584;CNN_1D=-14.933;DP=125;ExcessHet=3.0103;FS=24.815;MLEAC=1;MLEAF=0.500;MQ=51.65;MQRankSum=-10.795;QD=7.72;ReadPosRankSum=-1.698;SOR=2.707 GT:AD:DP:GQ:PL 0/1:80,45:125:99:972,0,1977 1 143906122 . C A 219.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;CNN_1D=-7.643;DP=40;ExcessHet=3.0103;FS=2.919;MLEAC=1;MLEAF=0.500;MQ=34.66;MQRankSum=-3.442;QD=5.49;ReadPosRankSum=-0.433;SOR=1.138 GT:AD:DP:GQ:PL 0/1:27,13:40:99:227,0,551 1 144014051 . G A 4120.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;CNN_1D=-16.118;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-0.906;SOR=0.680 GT:AD:DP:GQ:PL 0/1:449,220:669:99:4128,0,14809 1 144014068 . T C 12598.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;CNN_1D=-16.118;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.35;ReadPosRankSum=-1.849;SOR=0.674 GT:AD:DP:GQ:PL 0/1:217,402:619:99:12606,0,4051 1 144816621 . A G 582.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;CNN_1D=-16.112;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.37;MQRankSum=-7.064;QD=1.96;ReadPosRankSum=-6.168;SOR=0.676 GT:AD:DP:GQ:PL 0/1:242,55:297:99:590,0,5721 1 144823868 . T G 37.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.503;CNN_1D=-15.892;DP=84;ExcessHet=3.0103;FS=26.986;MLEAC=1;MLEAF=0.500;MQ=40.14;MQRankSum=-7.274;QD=0.45;ReadPosRankSum=-2.461;SOR=4.804 GT:AD:DP:GQ:PL 0/1:74,10:84:45:45,0,1643 1 144825519 . T A 582.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;CNN_1D=-7.509;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.38;MQRankSum=-4.062;QD=6.13;ReadPosRankSum=-0.800;SOR=0.708 GT:AD:DP:GQ:PL 0/1:63,32:95:99:590,0,1470 1 144852390 . C T 4362.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-2.489;CNN_1D=-16.118;DP=393;ExcessHet=3.0103;FS=0.363;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-9.070;QD=11.13;ReadPosRankSum=1.504;SOR=0.671 GT:AD:DP:GQ:PL 0/1:188,204:392:99:4370,0,4255 1 144852476 . T C 6722.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;CNN_1D=-16.107;DP=443;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-2.208;QD=15.18;ReadPosRankSum=-1.542;SOR=0.724 GT:AD:DP:GQ:PL 0/1:179,264:443:99:6730,0,3838 1 144852508 . AAACAT A 2662.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.382;CNN_1D=-16.048;DP=375;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=0.073;QD=7.22;ReadPosRankSum=4.832;SOR=0.556 GT:AD:DP:GQ:PL 0/1:285,84:369:99:2670,0,11711 1 144854180 . T C 2386.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;CNN_1D=-16.118;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-9.688;QD=5.21;ReadPosRankSum=-0.606;SOR=0.664 GT:AD:DP:GQ:PL 0/1:324,134:458:99:2394,0,7835 1 144854528 . A G 6785.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;CNN_1D=-16.118;DP=394;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-12.559;QD=17.22;ReadPosRankSum=-2.568;SOR=0.563 GT:AD:DP:GQ:PL 0/1:216,178:394:99:6793,0,8942 1 144854537 . T C 6857.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.210;CNN_1D=-16.118;DP=419;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-12.842;QD=16.37;ReadPosRankSum=-1.411;SOR=0.616 GT:AD:DP:GQ:PL 0/1:236,183:419:99:6865,0,9178 1 144854581 . T C 2386.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=5.284;CNN_1D=-16.118;DP=486;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-10.668;QD=4.91;ReadPosRankSum=0.912;SOR=0.762 GT:AD:DP:GQ:PL 0/1:366,120:486:99:2394,0,9024 1 144854594 . G T 2286.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;CNN_1D=-16.118;DP=497;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-10.398;QD=4.60;ReadPosRankSum=2.269;SOR=0.767 GT:AD:DP:GQ:PL 0/1:368,129:497:99:2294,0,14241 1 144854597 . T C 14724.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;CNN_1D=-16.111;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-4.525;QD=29.87;ReadPosRankSum=1.184;SOR=0.679 GT:AD:DP:GQ:PL 0/1:101,392:493:99:14732,0,1508 1 144854598 . C T 3308.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;CNN_1D=-16.024;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=6.531;QD=6.75;ReadPosRankSum=-1.257;SOR=0.691 GT:AD:DP:GQ:PL 0/1:319,171:490:99:3316,0,11845 1 144855782 . C T 1439.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;CNN_1D=-14.369;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-1.549;QD=4.95;ReadPosRankSum=-1.000;SOR=0.689 GT:AD:DP:GQ:PL 0/1:207,84:291:99:1447,0,4836 1 144855812 . T C 4409.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.856;CNN_1D=-14.637;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-6.203;QD=15.64;ReadPosRankSum=1.527;SOR=0.705 GT:AD:DP:GQ:PL 0/1:95,187:282:99:4417,0,1680 1 144855866 . A G 1432.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.307;CNN_1D=-14.989;DP=225;ExcessHet=3.0103;FS=5.112;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=-5.674;QD=6.40;ReadPosRankSum=-1.419;SOR=1.049 GT:AD:DP:GQ:PL 0/1:157,67:224:99:1440,0,3778 1 144856852 . C T 570.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;CNN_1D=-7.391;DP=157;ExcessHet=3.0103;FS=1.555;MLEAC=1;MLEAF=0.500;MQ=52.05;MQRankSum=0.219;QD=3.63;ReadPosRankSum=1.477;SOR=0.906 GT:AD:DP:GQ:PL 0/1:121,36:157:99:578,0,3073 1 144859889 . G T 1437.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;CNN_1D=-13.025;DP=287;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=-0.497;SOR=0.646 GT:AD:DP:GQ:PL 0/1:203,84:287:99:1445,0,4914 1 144863401 . T C 1344.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;CNN_1D=-13.001;DP=331;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=2.059;QD=4.07;ReadPosRankSum=1.506;SOR=0.543 GT:AD:DP:GQ:PL 0/1:244,86:330:99:1352,0,5766 1 144865850 . G T 3819.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;CNN_1D=-14.994;DP=339;ExcessHet=3.0103;FS=0.394;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-2.422;QD=11.30;ReadPosRankSum=-0.843;SOR=0.740 GT:AD:DP:GQ:PL 0/1:166,172:338:99:3827,0,3638 1 144866643 . G A 4134.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;CNN_1D=-15.423;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.646;SOR=0.684 GT:AD:DP:GQ:PL 0/1:194,189:383:99:4142,0,4207 1 144866662 . T C 6705.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;CNN_1D=-14.368;DP=389;ExcessHet=3.0103;FS=0.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=1.265;SOR=0.729 GT:AD:DP:GQ:PL 0/1:104,285:389:99:6713,0,1553 1 144868170 . C T 3253.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;CNN_1D=-7.713;DP=235;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.633;SOR=0.599 GT:AD:DP:GQ:PL 0/1:100,135:235:99:3261,0,2414 1 144871738 . C A 2933.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;CNN_1D=-2.456;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.360;QD=17.89;ReadPosRankSum=-0.904;SOR=0.653 GT:AD:DP:GQ:PL 0/1:86,78:164:99:2941,0,4195 1 144871755 . A T 3215.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;CNN_1D=-5.205;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.078;QD=16.58;ReadPosRankSum=-0.360;SOR=0.697 GT:AD:DP:GQ:PL 0/1:102,92:194:99:3223,0,4508 1 144871782 . A G 2329.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;CNN_1D=-9.125;DP=225;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.523;QD=10.35;ReadPosRankSum=1.529;SOR=0.686 GT:AD:DP:GQ:PL 0/1:121,104:225:99:2337,0,2750 1 144871889 . A C 1266.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300;CNN_1D=-3.555;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.526;SOR=0.680 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1274,0,1779 1 144873887 . C T 3795.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;CNN_1D=-13.997;DP=340;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-0.039;SOR=0.622 GT:AD:DP:GQ:PL 0/1:169,171:340:99:3803,0,3753 1 144873962 . CT C 3590.60 CNN_1D_INDEL_Tranche_99.40_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;CNN_1D=-16.118;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-2.756;SOR=0.700 GT:AD:DP:GQ:PL 0/1:327,125:452:99:3598,0,11777 1 144874038 . T C 3002.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;CNN_1D=-12.583;DP=287;ExcessHet=3.0103;FS=3.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.069;QD=10.46;ReadPosRankSum=-0.428;SOR=0.919 GT:AD:DP:GQ:PL 0/1:154,133:287:99:3010,0,3571 1 144874760 . T C 5738.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;CNN_1D=-16.118;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.671;QD=11.57;ReadPosRankSum=-0.947;SOR=0.691 GT:AD:DP:GQ:PL 0/1:239,257:496:99:5746,0,5240 1 144874815 . T C 1538.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;CNN_1D=-16.118;DP=506;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.145;QD=3.05;ReadPosRankSum=0.406;SOR=0.776 GT:AD:DP:GQ:PL 0/1:394,111:505:99:1546,0,9270 1 144877176 . C T 2440.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;CNN_1D=-13.675;DP=216;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-7.659;QD=11.35;ReadPosRankSum=-1.285;SOR=0.741 GT:AD:DP:GQ:PL 0/1:104,111:215:99:2448,0,2088 1 144879090 . T C 1012.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;CNN_1D=-7.354;DP=201;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-0.023;SOR=0.833 GT:AD:DP:GQ:PL 0/1:143,58:201:99:1020,0,3547 1 144879264 . A G 4765.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;CNN_1D=-9.173;DP=278;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=17.27;ReadPosRankSum=2.273;SOR=0.801 GT:AD:DP:GQ:PL 0/1:82,194:276:99:4773,0,1484 1 144879375 . T C 4295.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;CNN_1D=-15.497;DP=377;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.403;QD=11.39;ReadPosRankSum=-0.045;SOR=0.795 GT:AD:DP:GQ:PL 0/1:186,191:377:99:4303,0,4169 1 144880832 . T C 848.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;CNN_1D=-12.666;DP=287;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=1.332;SOR=0.814 GT:AD:DP:GQ:PL 0/1:223,64:287:99:856,0,5408 1 144880864 . T A 1030.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.765;CNN_1D=-8.726;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.544;SOR=0.699 GT:AD:DP:GQ:PL 0/1:150,59:209:99:1038,0,3315 1 144882581 . A G 4166.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;CNN_1D=-15.175;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.988;QD=12.15;ReadPosRankSum=-0.478;SOR=0.703 GT:AD:DP:GQ:PL 0/1:162,181:343:99:4174,0,3693 1 144882823 . C T 4859.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;CNN_1D=-16.071;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=0.197;SOR=0.735 GT:AD:DP:GQ:PL 0/1:211,218:429:99:4867,0,4665 1 144886092 . C T 2200.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;CNN_1D=-6.928;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=1.165;SOR=0.668 GT:AD:DP:GQ:PL 0/1:113,95:208:99:2208,0,2930 1 144886197 . A T 3428.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;CNN_1D=-13.874;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-0.652;SOR=0.705 GT:AD:DP:GQ:PL 0/1:180,155:335:99:3436,0,4109 1 144912153 . A G 7106.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-6.239;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.76;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7120,767,0 1 144912233 . C T 2581.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;CNN_1D=-10.228;DP=258;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.200;QD=10.01;ReadPosRankSum=1.517;SOR=0.725 GT:AD:DP:GQ:PL 0/1:141,117:258:99:2589,0,3087 1 144915561 . G A 2702.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;CNN_1D=-14.715;DP=308;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-1.898;QD=8.80;ReadPosRankSum=0.077;SOR=0.732 GT:AD:DP:GQ:PL 0/1:178,129:307:99:2710,0,3830 1 144915624 . G A 1793.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;CNN_1D=-9.036;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-2.260;QD=8.79;ReadPosRankSum=0.470;SOR=0.703 GT:AD:DP:GQ:PL 0/1:123,81:204:99:1801,0,3001 1 144916676 . C T 681.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;CNN_1D=-9.870;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=2.229;SOR=0.710 GT:AD:DP:GQ:PL 0/1:187,49:236:99:689,0,4811 1 144916748 . C G 1252.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;CNN_1D=-4.121;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-1.663;SOR=0.748 GT:AD:DP:GQ:PL 0/1:79,57:136:99:1260,0,1910 1 144917546 . A G 3049.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;CNN_1D=-11.372;DP=294;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=1.060;SOR=0.617 GT:AD:DP:GQ:PL 0/1:150,144:294:99:3057,0,3222 1 144917827 . CA C 563.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;CNN_1D=-8.560;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.92;MQRankSum=-0.463;QD=4.21;ReadPosRankSum=-1.576;SOR=0.728 GT:AD:DP:GQ:PL 0/1:108,26:134:99:571,0,3630 1 144917841 . T C 1220.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;CNN_1D=-6.537;DP=145;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=-1.010;QD=8.42;ReadPosRankSum=0.971;SOR=0.761 GT:AD:DP:GQ:PL 0/1:87,58:145:99:1228,0,1956 1 144918957 . T A 2311.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;CNN_1D=-6.723;DP=201;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.198;QD=11.50;ReadPosRankSum=2.828;SOR=0.740 GT:AD:DP:GQ:PL 0/1:96,105:201:99:2319,0,2167 1 144922523 . C T 818.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;CNN_1D=-8.525;DP=195;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.096;SOR=0.708 GT:AD:DP:GQ:PL 0/1:143,52:195:99:826,0,3416 1 144922583 . G A 2770.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;CNN_1D=-6.068;DP=209;ExcessHet=3.0103;FS=3.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=1.185;SOR=0.933 GT:AD:DP:GQ:PL 0/1:89,120:209:99:2778,0,1850 1 144923823 . TAGGAAGAAACGGCA T 5837.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.700;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.50;SOR=1.119 GT:AD:DP:GQ:PL 1/1:0,132:132:99:5851,413,0 1 144930596 . C A 1884.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;CNN_1D=-5.744;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=1.233;SOR=0.674 GT:AD:DP:GQ:PL 0/1:97,79:176:99:1892,0,2434 1 144930940 . T C 3657.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.994;CNN_1D=-12.461;DP=306;ExcessHet=3.0103;FS=3.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.073;SOR=0.794 GT:AD:DP:GQ:PL 0/1:163,143:306:99:3665,0,3939 1 144931087 . T C 1354.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;CNN_1D=-15.766;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.965;SOR=0.680 GT:AD:DP:GQ:PL 0/1:290,82:372:99:1362,0,7284 1 144931330 . C T 4634.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;CNN_1D=-15.934;DP=420;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=1.669;SOR=0.649 GT:AD:DP:GQ:PL 0/1:213,204:417:99:4642,0,5077 1 144931392 . G A 4154.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.795;CNN_1D=-15.794;DP=385;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-1.663;SOR=0.792 GT:AD:DP:GQ:PL 0/1:208,174:382:99:4162,0,4837 1 144931461 . A T 1872.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;CNN_1D=-14.278;DP=328;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-0.127;SOR=0.769 GT:AD:DP:GQ:PL 0/1:231,96:327:99:1880,0,5969 1 144952207 . C T 431.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;CNN_1D=-16.116;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.01;MQRankSum=-1.389;QD=1.15;ReadPosRankSum=1.311;SOR=0.708 GT:AD:DP:GQ:PL 0/1:319,57:376:99:439,0,7890 1 144952220 . C T 2018.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;CNN_1D=-16.078;DP=361;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=40.93;MQRankSum=0.141;QD=5.59;ReadPosRankSum=1.836;SOR=0.623 GT:AD:DP:GQ:PL 0/1:247,114:361:99:2026,0,5849 1 144994658 . C A 4666.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;CNN_1D=-16.118;DP=610;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=-0.154;SOR=0.798 GT:AD:DP:GQ:PL 0/1:377,232:609:99:4674,0,8695 1 145015877 . G T 725.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;CNN_1D=-16.118;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.047;SOR=0.707 GT:AD:DP:GQ:PL 0/1:448,87:535:99:733,0,10867 1 145016020 . T G 7257.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.185;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.91;SOR=1.116 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7271,752,0 1 145021150 . T C 336.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;CNN_1D=-16.106;DP=429;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=1.972;SOR=0.579 GT:AD:DP:GQ:PL 0/1:366,63:429:99:344,0,8587 1 145075683 . C T 3750.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723;CNN_1D=-14.617;DP=352;ExcessHet=3.0103;FS=3.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=1.385;SOR=0.669 GT:AD:DP:GQ:PL 0/1:180,170:350:99:3758,0,4291 1 145075854 . G C 3052.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;CNN_1D=-14.296;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=2.319;SOR=0.689 GT:AD:DP:GQ:PL 0/1:216,135:351:99:3060,0,5638 1 145103928 . G A 583.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;CNN_1D=-10.295;DP=221;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-1.121;SOR=0.881 GT:AD:DP:GQ:PL 0/1:178,41:219:99:591,0,4390 1 145103947 . T C 1974.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;CNN_1D=-10.899;DP=268;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-1.494;SOR=0.604 GT:AD:DP:GQ:PL 0/1:170,96:266:99:1982,0,3880 1 145109549 . G T 1763.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;CNN_1D=-16.106;DP=438;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=1.135;SOR=0.738 GT:AD:DP:GQ:PL 0/1:323,114:437:99:1771,0,7717 1 145109583 . C A 6452.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;CNN_1D=-16.118;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-0.483;SOR=0.733 GT:AD:DP:GQ:PL 0/1:268,296:564:99:6460,0,5487 1 145109661 . G A 1520.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;CNN_1D=-16.111;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-1.041;SOR=0.678 GT:AD:DP:GQ:PL 0/1:346,100:446:99:1528,0,8154 1 145112414 . T C 2893.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;CNN_1D=-15.761;DP=377;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=0.803;SOR=0.854 GT:AD:DP:GQ:PL 0/1:288,89:377:99:2901,0,12505 1 145112420 . C T 1150.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;CNN_1D=-16.086;DP=409;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=1.972;SOR=0.757 GT:AD:DP:GQ:PL 0/1:323,86:409:99:1158,0,9432 1 145112428 . C T 3116.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;CNN_1D=-16.109;DP=434;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=-0.600;SOR=0.771 GT:AD:DP:GQ:PL 0/1:327,107:434:99:3124,0,13225 1 145112485 . C T 1391.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;CNN_1D=-16.033;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.779;SOR=0.702 GT:AD:DP:GQ:PL 0/1:294,95:389:99:1399,0,7435 1 145115810 . A G 9938.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;CNN_1D=-16.118;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-1.744;SOR=0.691 GT:AD:DP:GQ:PL 0/1:274,326:600:99:9946,0,5939 1 145115820 . T C 2758.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;CNN_1D=-16.118;DP=600;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.218;SOR=0.820 GT:AD:DP:GQ:PL 0/1:433,166:599:99:2766,0,16525 1 145273302 . A G 658.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;CNN_1D=-16.118;DP=872;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.17;MQRankSum=-0.140;QD=0.76;ReadPosRankSum=-0.455;SOR=0.704 GT:AD:DP:GQ:PL 0/1:754,117:871:99:666,0,18646 1 145273345 . T C 734.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;CNN_1D=-16.118;DP=1039;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-0.964;QD=0.71;ReadPosRankSum=0.599;SOR=0.717 GT:AD:DP:GQ:PL 0/1:900,139:1039:99:742,0,22144 1 145281361 . TC T 1245.60 CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;CNN_1D=-16.118;DP=655;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=50.52;MQRankSum=-1.493;QD=1.91;ReadPosRankSum=1.116;SOR=0.895 GT:AD:DP:GQ:PL 0/1:567,86:653:99:1253,0,19060 1 145281408 . C T 642.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;CNN_1D=-16.118;DP=958;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.90;MQRankSum=-1.778;QD=0.67;ReadPosRankSum=1.354;SOR=0.747 GT:AD:DP:GQ:PL 0/1:831,126:957:99:650,0,20973 1 145281543 . C T 5637.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;CNN_1D=-16.118;DP=1050;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-0.447;QD=5.37;ReadPosRankSum=2.295;SOR=0.808 GT:AD:DP:GQ:PL 0/1:750,300:1050:99:5645,0,18624 1 145281613 . C A 3118.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214;CNN_1D=-16.118;DP=850;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-5.429;QD=3.67;ReadPosRankSum=1.790;SOR=0.553 GT:AD:DP:GQ:PL 0/1:720,130:850:99:3126,0,30011 1 145281633 . C A 3053.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;CNN_1D=-16.118;DP=799;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-5.403;QD=3.82;ReadPosRankSum=3.664;SOR=0.565 GT:AD:DP:GQ:PL 0/1:679,120:799:99:3061,0,29913 1 145281656 . A T 2800.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;CNN_1D=-16.118;DP=667;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-4.943;QD=4.21;ReadPosRankSum=2.244;SOR=0.530 GT:AD:DP:GQ:PL 0/1:558,108:666:99:2808,0,24989 1 145293425 . C A 499.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;CNN_1D=-16.118;DP=767;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-1.973;QD=0.65;ReadPosRankSum=-0.243;SOR=0.772 GT:AD:DP:GQ:PL 0/1:664,103:767:99:507,0,16220 1 145293469 . G C 391.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;CNN_1D=-16.118;DP=778;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-7.229;QD=0.50;ReadPosRankSum=1.598;SOR=0.701 GT:AD:DP:GQ:PL 0/1:678,99:777:99:399,0,16230 1 145293490 . G C 1776.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-2.681;CNN_1D=-16.118;DP=730;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-7.698;QD=2.44;ReadPosRankSum=0.727;SOR=0.717 GT:AD:DP:GQ:PL 0/1:635,94:729:99:1784,0,25342 1 145293498 . G C 1745.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;CNN_1D=-16.118;DP=677;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-8.111;QD=2.58;ReadPosRankSum=0.959;SOR=0.652 GT:AD:DP:GQ:PL 0/1:591,85:676:99:1753,0,24608 1 145293510 . C G 379.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;CNN_1D=-16.118;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-7.115;QD=0.61;ReadPosRankSum=0.321;SOR=0.688 GT:AD:DP:GQ:PL 0/1:544,80:624:99:387,0,16460 1 145293515 . A G 2995.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;CNN_1D=-16.118;DP=606;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=1.544;QD=4.95;ReadPosRankSum=0.372;SOR=0.625 GT:AD:DP:GQ:PL 0/1:431,174:605:99:3003,0,11408 1 145293566 . G A 1030.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;CNN_1D=-16.097;DP=351;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-2.273;QD=2.95;ReadPosRankSum=-1.811;SOR=0.846 GT:AD:DP:GQ:PL 0/1:281,68:349:99:1038,0,7055 1 145296372 . A G 4079.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;CNN_1D=-15.650;DP=229;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.500;MQ=49.46;MQRankSum=-11.881;QD=17.81;ReadPosRankSum=1.662;SOR=0.501 GT:AD:DP:GQ:PL 0/1:69,160:229:99:4087,0,1283 1 145296478 . G T 4680.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;CNN_1D=-16.068;DP=357;ExcessHet=3.0103;FS=7.030;MLEAC=1;MLEAF=0.500;MQ=48.43;MQRankSum=-5.151;QD=13.11;ReadPosRankSum=0.907;SOR=0.696 GT:AD:DP:GQ:PL 0/1:148,209:357:99:4688,0,3044 1 145299758 . C T 112.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.170;CNN_1D=-16.092;DP=255;ExcessHet=3.0103;FS=5.482;MLEAC=1;MLEAF=0.500;MQ=34.59;MQRankSum=-3.203;QD=0.44;ReadPosRankSum=-0.250;SOR=0.589 GT:AD:DP:GQ:PL 0/1:219,36:255:99:120,0,5364 1 145299824 . C G 549.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;CNN_1D=-16.118;DP=378;ExcessHet=3.0103;FS=13.791;MLEAC=1;MLEAF=0.500;MQ=42.73;MQRankSum=-6.534;QD=1.45;ReadPosRankSum=2.502;SOR=1.363 GT:AD:DP:GQ:PL 0/1:312,66:378:99:557,0,7191 1 145301793 . A G 1916.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;CNN_1D=-9.723;DP=215;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=51.99;MQRankSum=-0.451;QD=8.96;ReadPosRankSum=-0.317;SOR=0.849 GT:AD:DP:GQ:PL 0/1:154,60:214:99:1924,0,6650 1 145301802 . C G 1825.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;CNN_1D=-8.534;DP=194;ExcessHet=3.0103;FS=3.771;MLEAC=1;MLEAF=0.500;MQ=51.81;MQRankSum=0.136;QD=9.41;ReadPosRankSum=-1.483;SOR=1.011 GT:AD:DP:GQ:PL 0/1:141,53:194:99:1833,0,6387 1 145301831 . A G 379.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;CNN_1D=-8.451;DP=119;ExcessHet=3.0103;FS=5.321;MLEAC=1;MLEAF=0.500;MQ=49.60;MQRankSum=-2.201;QD=3.19;ReadPosRankSum=-0.908;SOR=1.433 GT:AD:DP:GQ:PL 0/1:102,17:119:99:387,0,4564 1 145302704 . A G 813.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.031;CNN_1D=-14.564;DP=163;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=50.05;MQRankSum=-9.242;QD=4.99;ReadPosRankSum=0.400;SOR=0.883 GT:AD:DP:GQ:PL 0/1:126,37:163:99:821,0,2983 1 145311828 . C G 3151.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.624;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.15;QD=27.40;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3165,345,0 1 145352701 . C G 60.62 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;CNN_1D=-4.098;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=21.75;MQRankSum=1.150;QD=15.15;ReadPosRankSum=-1.150;SOR=1.609 GT:AD:DP:GQ:PL 0/1:1,3:4:14:68,0,14 1 145367748 . G T 697.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;CNN_1D=-6.366;DP=168;ExcessHet=3.0103;FS=4.107;MLEAC=1;MLEAF=0.500;MQ=48.48;MQRankSum=2.675;QD=4.15;ReadPosRankSum=1.240;SOR=0.690 GT:AD:DP:GQ:PL 0/1:123,45:168:99:705,0,2611 1 145368461 . A C 874.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;CNN_1D=-13.597;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=3.226;QD=2.68;ReadPosRankSum=0.626;SOR=0.726 GT:AD:DP:GQ:PL 0/1:262,64:326:99:882,0,6951 1 145368473 . G C 993.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.478;CNN_1D=-16.118;DP=356;ExcessHet=3.0103;FS=22.657;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-15.643;QD=2.81;ReadPosRankSum=-3.212;SOR=1.791 GT:AD:DP:GQ:PL 0/1:287,67:354:99:1001,0,6869 1 145368518 . C T 1145.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-3.008;CNN_1D=-16.118;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.41;MQRankSum=-9.829;QD=2.67;ReadPosRankSum=0.227;SOR=0.749 GT:AD:DP:GQ:PL 0/1:334,95:429:99:1153,0,9170 1 145368525 . C G 605.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.703;CNN_1D=-16.083;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.67;MQRankSum=3.522;QD=1.39;ReadPosRankSum=0.016;SOR=0.681 GT:AD:DP:GQ:PL 0/1:373,64:437:99:613,0,10618 1 145477257 . T C 566.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;CNN_1D=0.600;DP=44;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-1.675;SOR=1.270 GT:AD:DP:GQ:PL 0/1:20,24:44:99:574,0,472 1 145532549 . T C 5084.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.839;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.22;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5098,520,0 1 145533175 . T C 1990.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;CNN_1D=-5.193;DP=163;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-2.145;SOR=0.669 GT:AD:DP:GQ:PL 0/1:78,85:163:99:1998,0,1839 1 145536012 . G A 1745.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;CNN_1D=-4.605;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=-1.730;SOR=0.651 GT:AD:DP:GQ:PL 0/1:79,73:152:99:1753,0,1830 1 145561594 . C T 4217.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.031;CNN_1D=0.003;DP=150;ExcessHet=3.0103;FS=2.112;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.30;ReadPosRankSum=-1.379;SOR=0.444 GT:AD:DP:GQ:PL 1/1:3,146:149:99:4231,358,0 1 145562881 . T C 2305.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.236;CNN_1D=3.762;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.94;ReadPosRankSum=2.099;SOR=1.164 GT:AD:DP:GQ:PL 1/1:2,75:77:99:2319,181,0 1 145601861 . G A 1387.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.954;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.82;SOR=1.280 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1401,135,0 1 146395336 . G A 40.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.779;CNN_1D=-4.606;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=35.37;MQRankSum=-1.133;QD=2.39;ReadPosRankSum=0.756;SOR=0.069 GT:AD:DP:GQ:PL 0/1:14,3:17:48:48,0,393 1 146395447 . A G 311.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;CNN_1D=-4.525;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.57;MQRankSum=-2.512;QD=5.67;ReadPosRankSum=1.453;SOR=0.737 GT:AD:DP:GQ:PL 0/1:37,18:55:99:319,0,937 1 146395465 . T A 102.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;CNN_1D=-5.624;DP=56;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=47.28;MQRankSum=-2.224;QD=1.83;ReadPosRankSum=0.321;SOR=0.473 GT:AD:DP:GQ:PL 0/1:46,10:56:99:110,0,1147 1 146398387 . G C 441.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.851;CNN_1D=-13.165;DP=215;ExcessHet=3.0103;FS=24.829;MLEAC=1;MLEAF=0.500;MQ=35.33;MQRankSum=2.430;QD=2.05;ReadPosRankSum=-2.191;SOR=2.372 GT:AD:DP:GQ:PL 0/1:178,37:215:99:449,0,4275 1 146399562 . T C 103.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.007;CNN_1D=-9.100;DP=47;ExcessHet=3.0103;FS=3.479;MLEAC=1;MLEAF=0.500;MQ=42.08;MQRankSum=-4.533;QD=2.20;ReadPosRankSum=0.014;SOR=1.586 GT:AD:DP:GQ:PL 0/1:38,9:47:99:111,0,938 1 146672906 . C T 3790.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.297;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.71;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3804,396,0 1 146714392 . G C,T 1711.02 PASS AC=1,1;AF=0.500,0.500;AN=2;CNN_1D=2.654;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=24.10;SOR=0.971 GT:AD:DP:GQ:PL 1/2:0,31,40:71:99:1728,951,858,777,0,657 1 146736092 . C T 608.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;CNN_1D=-0.254;DP=75;ExcessHet=3.0103;FS=3.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=0.420;SOR=0.543 GT:AD:DP:GQ:PL 0/1:44,31:75:99:616,0,1033 1 146740502 . C G 501.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;CNN_1D=2.818;DP=41;ExcessHet=3.0103;FS=6.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=0.157;SOR=0.499 GT:AD:DP:GQ:PL 0/1:19,22:41:99:509,0,455 1 146751782 . A C 4852.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.171;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.57;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4866,526,0 1 146759306 . T C 888.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;CNN_1D=-1.040;DP=82;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-1.220;SOR=0.917 GT:AD:DP:GQ:PL 0/1:42,40:82:99:896,0,895 1 146767149 . G T 2404.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.710;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.95;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2418,258,0 1 147121977 . C T 4492.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.348;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.25;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4506,476,0 1 147595076 . C T 130.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;CNN_1D=0.010;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=21.77;ReadPosRankSum=0.431;SOR=1.329 GT:AD:DP:GQ:PL 0/1:2,4:6:53:138,0,53 1 148252049 . A C 290.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.069;CNN_1D=-15.523;DP=191;ExcessHet=3.0103;FS=9.008;MLEAC=1;MLEAF=0.500;MQ=45.19;MQRankSum=-6.638;QD=1.52;ReadPosRankSum=-0.074;SOR=0.701 GT:AD:DP:GQ:PL 0/1:157,34:191:99:298,0,3963 1 148252111 . C T 835.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.636;CNN_1D=-13.709;DP=148;ExcessHet=3.0103;FS=9.456;MLEAC=1;MLEAF=0.500;MQ=47.55;MQRankSum=-8.948;QD=5.65;ReadPosRankSum=-0.165;SOR=0.340 GT:AD:DP:GQ:PL 0/1:97,51:148:99:843,0,2239 1 148252777 . T TCTC 951.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;CNN_1D=-11.637;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.52;MQRankSum=-1.438;QD=7.32;ReadPosRankSum=-1.794;SOR=0.618 GT:AD:DP:GQ:PL 0/1:100,30:130:99:959,0,4469 1 148252811 . T A 266.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;CNN_1D=-10.811;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.46;MQRankSum=-1.428;QD=2.36;ReadPosRankSum=0.994;SOR=0.785 GT:AD:DP:GQ:PL 0/1:89,24:113:99:274,0,2502 1 148582481 . A G 35.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;CNN_1D=-5.728;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=33.59;MQRankSum=2.069;QD=0.59;ReadPosRankSum=-2.278;SOR=0.686 GT:AD:DP:GQ:PL 0/1:51,9:60:43:43,0,1196 1 148589005 . G A 237.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;CNN_1D=-11.026;DP=113;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.500;MQ=28.76;MQRankSum=-2.492;QD=2.14;ReadPosRankSum=1.056;SOR=0.869 GT:AD:DP:GQ:PL 0/1:88,23:111:99:245,0,1935 1 149906413 . T C 616.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;CNN_1D=0.145;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=2.458;SOR=0.665 GT:AD:DP:GQ:PL 0/1:43,29:72:99:624,0,1045 1 149939383 . T C 1006.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;CNN_1D=-4.367;DP=115;ExcessHet=3.0103;FS=4.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=0.443;SOR=1.116 GT:AD:DP:GQ:PL 0/1:65,50:115:99:1014,0,1457 1 150258838 . C G 3699.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.004;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.62;SOR=1.650 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3713,351,0 1 150531008 . T C 3880.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.102;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.53;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3894,408,0 1 150531050 . G A 1731.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;CNN_1D=-5.152;DP=171;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.777;SOR=0.860 GT:AD:DP:GQ:PL 0/1:93,78:171:99:1739,0,2033 1 150531170 . C T 3886.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.238;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.37;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3900,411,0 1 150676674 . TA T,TAA 182.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.560;CNN_1D=-1.715;DP=33;ExcessHet=3.0103;FS=4.099;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.233;SOR=1.219 GT:AD:DP:GQ:PL 1/2:8,10,13:31:48:199,71,298,48,0,244 1 150679033 . G A 1648.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.604;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.52;SOR=1.567 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1662,162,0 1 150727539 . G A 3450.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.442;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.51;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3464,363,0 1 150771703 . T C 3138.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.995;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.79;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3152,327,0 1 150808889 . C G 5000.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.241;CNN_1D=-2.450;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.88;ReadPosRankSum=1.179;SOR=0.374 GT:AD:DP:GQ:PL 1/1:3,183:186:99:5014,470,0 1 150923099 . T C 5733.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.542;CNN_1D=-1.456;DP=190;ExcessHet=3.0103;FS=2.975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.17;ReadPosRankSum=0.685;SOR=0.157 GT:AD:DP:GQ:PL 1/1:2,188:190:99:5747,495,0 1 150938616 . G A 2026.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.016;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.38;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2040,221,0 1 150940193 . G A 1452.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;CNN_1D=-4.173;DP=147;ExcessHet=3.0103;FS=2.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.356;SOR=0.474 GT:AD:DP:GQ:PL 0/1:84,63:147:99:1460,0,1979 1 150940357 . G T 4239.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.455;CNN_1D=2.094;DP=105;ExcessHet=3.0103;FS=4.243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.59;ReadPosRankSum=-1.054;SOR=1.154 GT:AD:DP:GQ:PL 1/1:5,100:105:87:4253,87,0 1 150940358 . C T 4239.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;CNN_1D=2.796;DP=105;ExcessHet=3.0103;FS=4.243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=33.22;ReadPosRankSum=-1.069;SOR=1.154 GT:AD:DP:GQ:PL 1/1:5,100:105:87:4253,87,0 1 150960350 . A C 2004.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.244;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.47;SOR=1.263 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2018,204,0 1 150970577 . G T 3437.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.170;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.64;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3451,359,0 1 150975108 . T C 4327.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.482;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.56;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4341,470,0 1 151006539 . C A 3906.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.757;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.05;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3920,390,0 1 151009208 . A G 1740.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;CNN_1D=-3.969;DP=155;ExcessHet=3.0103;FS=2.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-0.228;SOR=0.544 GT:AD:DP:GQ:PL 0/1:72,82:154:99:1748,0,1484 1 151104950 . G A 3085.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.942;CNN_1D=2.669;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.10;ReadPosRankSum=-0.719;SOR=0.364 GT:AD:DP:GQ:PL 1/1:1,105:106:99:3099,277,0 1 151105824 . C G 1543.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.156;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.11;SOR=1.287 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1557,159,0 1 151108137 . T G 3992.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.140;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.93;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4006,414,0 1 151115017 . G A 2184.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;CNN_1D=-7.799;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=-1.306;SOR=0.700 GT:AD:DP:GQ:PL 0/1:105,101:206:99:2192,0,2362 1 151209063 . C T 764.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;CNN_1D=0.831;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.303;QD=9.80;ReadPosRankSum=-0.844;SOR=0.788 GT:AD:DP:GQ:PL 0/1:43,35:78:99:772,0,995 1 151239051 . T C 1663.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;CNN_1D=-0.814;DP=118;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=-0.815;SOR=0.557 GT:AD:DP:GQ:PL 0/1:45,73:118:99:1671,0,1016 1 151259043 . C T 985.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;CNN_1D=-0.677;DP=94;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=0.567;SOR=0.495 GT:AD:DP:GQ:PL 0/1:52,42:94:99:993,0,1256 1 151259543 . G A 1360.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;CNN_1D=-1.989;DP=121;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=0.839;SOR=0.556 GT:AD:DP:GQ:PL 0/1:64,57:121:99:1368,0,1754 1 151288172 . G A 1364.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;CNN_1D=-1.531;DP=105;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-0.969;SOR=0.968 GT:AD:DP:GQ:PL 0/1:51,54:105:99:1372,0,1283 1 151288391 . A G 7053.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.422;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.44;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7067,744,0 1 151316161 . G A 2596.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.040;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.17;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2610,267,0 1 151372138 . G A 3540.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.517;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.44;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3554,387,0 1 151380725 . GA G 136.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;CNN_1D=-1.937;DP=86;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=2.192;SOR=0.702 GT:AD:DP:GQ:PL 0/1:62,13:75:99:144,0,1434 1 151396037 . A C 1651.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.349;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.07;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1665,183,0 1 151497140 . T C 349.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;CNN_1D=2.222;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=0.461;SOR=0.941 GT:AD:DP:GQ:PL 0/1:13,15:28:99:357,0,304 1 151733335 . T G 845.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;CNN_1D=1.062;DP=68;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=-2.165;SOR=0.472 GT:AD:DP:GQ:PL 0/1:29,39:68:99:853,0,584 1 151740666 . T C 3475.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.109;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.48;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3489,365,0 1 151747970 . A G 4124.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.266;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.05;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4138,441,0 1 151810527 . G A 2422.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;CNN_1D=-5.001;DP=187;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=-1.465;SOR=0.576 GT:AD:DP:GQ:PL 0/1:82,105:187:99:2430,0,1824 1 151811226 . G A 1723.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.939;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.72;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1737,180,0 1 151820298 . G C 4922.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.782;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.97;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4936,528,0 1 151820324 . T C 1787.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350;CNN_1D=-3.674;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=0.697;SOR=0.642 GT:AD:DP:GQ:PL 0/1:67,84:151:99:1795,0,1511 1 151825991 . G T 1890.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;CNN_1D=-3.717;DP=149;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-0.997;SOR=0.659 GT:AD:DP:GQ:PL 0/1:64,85:149:99:1898,0,1391 1 151867560 . G A 3427.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.831;CNN_1D=1.208;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQRankSum=-0.542;QD=27.20;ReadPosRankSum=2.265;SOR=0.759 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3441,328,0 1 151881885 . A C 1238.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.091;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.51;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1252,135,0 1 152079989 . T G 1152.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430;CNN_1D=-1.203;DP=99;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.168;SOR=0.658 GT:AD:DP:GQ:PL 0/1:48,51:99:99:1160,0,1172 1 152081921 . G C 1899.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;CNN_1D=-4.904;DP=166;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-1.164;SOR=0.805 GT:AD:DP:GQ:PL 0/1:87,79:166:99:1907,0,2163 1 152085505 . A C 3726.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.156;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.81;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3740,402,0 1 152128200 . G A 4099.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;CNN_1D=-16.059;DP=426;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.579;QD=9.76;ReadPosRankSum=-1.604;SOR=0.706 GT:AD:DP:GQ:PL 0/1:212,208:420:99:4107,0,5693 1 152185762 . C G 4046.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.278;CNN_1D=2.596;DP=101;ExcessHet=3.0103;FS=4.636;MLEAC=2;MLEAF=1.00;MQ=59.52;MQRankSum=-0.440;QD=29.27;ReadPosRankSum=0.523;SOR=0.456 GT:AD:DP:GQ:PL 1/1:4,97:101:99:4060,124,0 1 152185768 . T G 4021.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.236;CNN_1D=3.459;DP=95;ExcessHet=3.0103;FS=4.772;MLEAC=2;MLEAF=1.00;MQ=59.48;MQRankSum=-0.455;QD=35.32;ReadPosRankSum=-0.287;SOR=0.545 GT:AD:DP:GQ:PL 1/1:4,91:95:99:4035,121,0 1 152185774 . A G 3451.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.557;CNN_1D=2.993;DP=79;ExcessHet=3.0103;FS=2.408;MLEAC=2;MLEAF=1.00;MQ=59.38;MQRankSum=-0.425;QD=32.71;ReadPosRankSum=-1.720;SOR=0.835 GT:AD:DP:GQ:PL 1/1:3,76:79:99:3465,115,0 1 152185780 . G A 3001.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.081;CNN_1D=3.486;DP=70;ExcessHet=3.0103;FS=2.422;MLEAC=2;MLEAF=1.00;MQ=59.30;MQRankSum=-0.455;QD=34.94;ReadPosRankSum=-2.018;SOR=0.853 GT:AD:DP:GQ:PL 1/1:3,67:70:85:3015,85,0 1 152185790 . T C 2371.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.046;CNN_1D=2.772;DP=49;ExcessHet=3.0103;FS=2.448;MLEAC=2;MLEAF=1.00;MQ=59.00;MQRankSum=-0.556;QD=26.71;ReadPosRankSum=-2.799;SOR=0.877 GT:AD:DP:GQ:PL 1/1:3,46:49:43:2385,43,0 1 152185792 . G A 1921.10 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.468;CNN_1D=3.107;DP=47;ExcessHet=3.0103;FS=2.464;MLEAC=2;MLEAF=1.00;MQ=58.95;MQRankSum=-0.569;QD=31.07;ReadPosRankSum=-2.812;SOR=0.902 GT:AD:DP:GQ:PL 1/1:3,44:47:12:1935,12,0 1 152185796 . A G 1790.44 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.836;CNN_1D=2.954;DP=45;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-0.584;QD=32.26;ReadPosRankSum=-2.850;SOR=0.929 GT:AD:DP:GQ:PL 1/1:3,42:45:3:1800,3,0 1 152185812 . C CAG 1033.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;CNN_1D=0.928;DP=22;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-0.912;QD=27.11;ReadPosRankSum=-2.695;SOR=0.799 GT:AD:DP:GQ:PL 0/1:3,19:22:51:1041,0,51 1 152185817 . CCA C 529.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;CNN_1D=-0.044;DP=13;ExcessHet=3.0103;FS=6.929;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-1.135;QD=26.22;ReadPosRankSum=-2.482;SOR=2.245 GT:AD:DP:GQ:PL 0/1:3,10:13:87:537,0,87 1 152185823 . C T 319.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;CNN_1D=1.893;DP=11;ExcessHet=3.0103;FS=8.195;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-0.955;QD=29.05;ReadPosRankSum=-2.744;SOR=2.800 GT:AD:DP:GQ:PL 0/1:3,8:11:99:327,0,102 1 152186141 . C T 2397.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.393;CNN_1D=-0.847;DP=106;ExcessHet=3.0103;FS=19.971;MLEAC=2;MLEAF=1.00;MQ=35.92;MQRankSum=3.363;QD=22.83;ReadPosRankSum=-0.235;SOR=0.766 GT:AD:DP:GQ:PL 1/1:9,96:105:55:2411,55,0 1 152186178 . C T 1666.61 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;CNN_1D=-2.439;DP=77;ExcessHet=3.0103;FS=22.432;MLEAC=1;MLEAF=0.500;MQ=31.34;MQRankSum=2.002;QD=21.64;ReadPosRankSum=-3.013;SOR=1.855 GT:AD:DP:GQ:PL 0/1:9,68:77:17:1674,0,17 1 152186222 . T C 878.02 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.247;CNN_1D=-5.539;DP=37;ExcessHet=3.0103;FS=9.519;MLEAC=2;MLEAF=1.00;MQ=24.73;MQRankSum=-2.726;QD=23.73;ReadPosRankSum=-0.445;SOR=2.868 GT:AD:DP:GQ:PL 1/1:3,34:37:31:892,31,0 1 152186417 . C G 415.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;CNN_1D=-7.592;DP=45;ExcessHet=3.0103;FS=5.994;MLEAC=1;MLEAF=0.500;MQ=24.79;MQRankSum=-0.987;QD=9.24;ReadPosRankSum=1.851;SOR=2.494 GT:AD:DP:GQ:PL 0/1:26,19:45:99:423,0,635 1 152186443 . A G 102.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.499;CNN_1D=-7.450;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=24.53;MQRankSum=1.100;QD=1.45;ReadPosRankSum=-0.095;SOR=0.148 GT:AD:DP:GQ:PL 0/1:60,11:71:99:110,0,1539 1 152186614 . C G 426.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;CNN_1D=-16.118;DP=539;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=29.48;MQRankSum=0.054;QD=0.79;ReadPosRankSum=-0.548;SOR=0.469 GT:AD:DP:GQ:PL 0/1:464,75:539:99:434,0,11181 1 152186699 . T A 1465.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;CNN_1D=-16.118;DP=1082;ExcessHet=3.0103;FS=20.903;MLEAC=1;MLEAF=0.500;MQ=34.92;MQRankSum=8.520;QD=1.35;ReadPosRankSum=-10.107;SOR=2.203 GT:AD:DP:GQ:PL 0/1:918,164:1082:99:1473,0,22981 1 152186766 . G A 6875.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.555;CNN_1D=-16.118;DP=1340;ExcessHet=3.0103;FS=4.446;MLEAC=1;MLEAF=0.500;MQ=37.31;MQRankSum=5.834;QD=5.13;ReadPosRankSum=4.697;SOR=0.592 GT:AD:DP:GQ:PL 0/1:908,431:1339:99:6883,0,20815 1 152187183 . C A 5198.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;CNN_1D=-16.118;DP=793;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=36.31;MQRankSum=0.377;QD=6.56;ReadPosRankSum=0.995;SOR=0.771 GT:AD:DP:GQ:PL 0/1:532,261:793:99:5206,0,12778 1 152187297 . T A 896.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;CNN_1D=-14.777;DP=156;ExcessHet=3.0103;FS=37.191;MLEAC=1;MLEAF=0.500;MQ=27.78;MQRankSum=2.378;QD=5.75;ReadPosRankSum=-5.689;SOR=5.166 GT:AD:DP:GQ:PL 0/1:124,32:156:99:904,0,30643 1 152187302 . GATCC G 839.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.969;CNN_1D=-15.356;DP=151;ExcessHet=3.0103;FS=34.756;MLEAC=1;MLEAF=0.500;MQ=27.66;MQRankSum=2.315;QD=5.56;ReadPosRankSum=-5.940;SOR=5.066 GT:AD:DP:GQ:PL 0/1:124,27:151:99:847,0,31126 1 152187310 . C CATGT 676.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.856;CNN_1D=-14.655;DP=142;ExcessHet=3.0103;FS=35.789;MLEAC=1;MLEAF=0.500;MQ=27.54;MQRankSum=2.584;QD=4.77;ReadPosRankSum=-1.514;SOR=5.132 GT:AD:DP:GQ:PL 0/1:118,24:142:99:684,0,31344 1 152187314 . T C 427.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.196;CNN_1D=-13.955;DP=137;ExcessHet=3.0103;FS=28.059;MLEAC=1;MLEAF=0.500;MQ=27.40;MQRankSum=2.280;QD=3.12;ReadPosRankSum=-5.858;SOR=4.575 GT:AD:DP:GQ:PL 0/1:120,17:137:99:435,0,31196 1 152187317 . A C 256.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.392;CNN_1D=-14.114;DP=137;ExcessHet=3.0103;FS=26.083;MLEAC=1;MLEAF=0.500;MQ=27.33;MQRankSum=2.385;QD=1.87;ReadPosRankSum=-5.733;SOR=4.568 GT:AD:DP:GQ:PL 0/1:122,15:137:99:264,0,31191 1 152187320 . G C 123.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;CNN_1D=-13.680;DP=131;ExcessHet=3.0103;FS=18.605;MLEAC=1;MLEAF=0.500;MQ=27.20;MQRankSum=1.881;QD=0.94;ReadPosRankSum=-4.916;SOR=3.923 GT:AD:DP:GQ:PL 0/1:121,10:131:99:131,0,30923 1 152187322 . T C 45.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.714;CNN_1D=-13.655;DP=125;ExcessHet=3.0103;FS=16.131;MLEAC=1;MLEAF=0.500;MQ=27.23;MQRankSum=1.811;QD=0.36;ReadPosRankSum=-4.626;SOR=3.638 GT:AD:DP:GQ:PL 0/1:117,8:125:53:53,0,30505 1 152187554 . C T 4278.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.334;CNN_1D=-16.111;DP=470;ExcessHet=3.0103;FS=5.224;MLEAC=1;MLEAF=0.500;MQ=33.29;MQRankSum=4.837;QD=9.10;ReadPosRankSum=3.398;SOR=0.417 GT:AD:DP:GQ:PL 0/1:259,211:470:99:4286,0,5991 1 152187562 . A C 16482.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-16.102;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=32.91;QD=30.84;SOR=1.384 GT:AD:DP:GQ:PL 1/1:0,462:462:99:16496,1409,0 1 152187588 . C T 917.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;CNN_1D=-16.118;DP=955;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=37.94;MQRankSum=0.873;QD=0.96;ReadPosRankSum=-6.505;SOR=0.887 GT:AD:DP:GQ:PL 0/1:811,144:955:99:925,0,19319 1 152187810 . G A 1124.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-2.043;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=24.24;QD=27.42;SOR=2.726 GT:AD:DP:GQ:PL 1/1:0,41:41:80:1138,80,0 1 152187935 . C T 2407.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;CNN_1D=-13.949;DP=268;ExcessHet=3.0103;FS=17.374;MLEAC=1;MLEAF=0.500;MQ=39.71;MQRankSum=2.271;QD=8.98;ReadPosRankSum=-7.580;SOR=1.688 GT:AD:DP:GQ:PL 0/1:202,66:268:99:2415,0,9721 1 152187945 . C T 3040.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.305;CNN_1D=-13.959;DP=314;ExcessHet=3.0103;FS=13.252;MLEAC=1;MLEAF=0.500;MQ=40.58;MQRankSum=4.876;QD=9.68;ReadPosRankSum=-7.956;SOR=1.313 GT:AD:DP:GQ:PL 0/1:211,103:314:99:3048,0,9895 1 152188109 . T A 5544.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-5.158;CNN_1D=-16.118;DP=823;ExcessHet=3.0103;FS=19.345;MLEAC=1;MLEAF=0.500;MQ=44.07;MQRankSum=-4.983;QD=6.74;ReadPosRankSum=4.123;SOR=0.872 GT:AD:DP:GQ:PL 0/1:532,291:823:99:5552,0,14581 1 152188176 . G A 3680.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=7.532;CNN_1D=-16.118;DP=1233;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=45.02;MQRankSum=-2.732;QD=2.99;ReadPosRankSum=-3.740;SOR=0.588 GT:AD:DP:GQ:PL 0/1:982,250:1232:99:3688,0,22558 1 152188463 . G A 5529.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-3.146;CNN_1D=-16.118;DP=1774;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.50;MQRankSum=2.089;QD=3.12;ReadPosRankSum=0.233;SOR=0.694 GT:AD:DP:GQ:PL 0/1:1393,379:1772:99:5537,0,35175 1 152188847 . A G 465.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.603;CNN_1D=-16.118;DP=610;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=31.07;MQRankSum=-1.438;QD=0.76;ReadPosRankSum=-0.608;SOR=0.577 GT:AD:DP:GQ:PL 0/1:531,79:610:99:473,0,13630 1 152188920 . C T 4407.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;CNN_1D=-16.118;DP=936;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=32.88;MQRankSum=-1.124;QD=4.73;ReadPosRankSum=-0.515;SOR=0.668 GT:AD:DP:GQ:PL 0/1:667,265:932:99:4415,0,15250 1 152188998 . C T 3907.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.529;CNN_1D=-16.118;DP=669;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=33.52;MQRankSum=0.408;QD=5.84;ReadPosRankSum=-0.289;SOR=0.784 GT:AD:DP:GQ:PL 0/1:458,211:669:99:3915,0,10417 1 152189055 . G C 6806.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-11.058;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=28.26;QD=31.08;SOR=4.854 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6820,659,0 1 152189237 . C G 57.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.941;CNN_1D=-6.119;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=24.79;MQRankSum=1.282;QD=1.80;ReadPosRankSum=-0.797;SOR=0.065 GT:AD:DP:GQ:PL 0/1:26,6:32:65:65,0,670 1 152189956 . A C 35.44 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-0.557;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=27.00;QD=27.62;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,1:1:3:45,3,0 1 152189959 . G T 35.44 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=0.946;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=27.00;QD=35.18;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,1:1:3:45,3,0 1 152190004 . G A 65.80 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.582;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.46;QD=21.93;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,3:3:9:79,9,0 1 152190720 . C T 1532.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.750;CNN_1D=-0.994;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQRankSum=1.639;QD=28.91;ReadPosRankSum=0.621;SOR=2.833 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1546,130,0 1 152191709 . C G 6798.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.853;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.48;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6812,668,0 1 152191879 . G A 7418.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.032;CNN_1D=-5.614;DP=263;ExcessHet=3.0103;FS=3.162;MLEAC=2;MLEAF=1.00;MQ=59.74;MQRankSum=-0.093;QD=28.21;ReadPosRankSum=-0.349;SOR=0.346 GT:AD:DP:GQ:PL 1/1:1,262:263:99:7432,776,0 1 152192097 . C CGG 53.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;CNN_1D=-16.117;DP=278;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-8.954;QD=0.19;ReadPosRankSum=-5.474;SOR=1.107 GT:AD:DP:GQ:PL 0/1:258,20:278:61:61,0,10654 1 152192100 . A C 66.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.679;CNN_1D=-16.118;DP=286;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-10.693;QD=0.23;ReadPosRankSum=-6.372;SOR=0.877 GT:AD:DP:GQ:PL 0/1:259,27:286:74:74,0,10851 1 152192101 . ATC A 39.60 CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.705;CNN_1D=-16.118;DP=299;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-9.742;QD=0.13;ReadPosRankSum=-6.211;SOR=0.779 GT:AD:DP:GQ:PL 0/1:271,28:299:47:47,0,11098 1 152192114 . C T 6246.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.145;CNN_1D=-0.596;DP=347;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=13.897;QD=18.05;ReadPosRankSum=7.141;SOR=0.664 GT:AD:DP:GQ:PL 0/1:101,245:346:99:6254,0,2772 1 152192163 . G T 2536.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;CNN_1D=-16.118;DP=363;ExcessHet=3.0103;FS=0.398;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-13.551;QD=6.99;ReadPosRankSum=9.197;SOR=0.722 GT:AD:DP:GQ:PL 0/1:238,125:363:99:2544,0,5938 1 152192219 . G C 2622.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;CNN_1D=-16.118;DP=377;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=52.99;MQRankSum=-10.102;QD=6.96;ReadPosRankSum=0.024;SOR=0.719 GT:AD:DP:GQ:PL 0/1:252,125:377:99:2630,0,6473 1 152192259 . T C 501.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.103;CNN_1D=-16.116;DP=297;ExcessHet=3.0103;FS=15.654;MLEAC=1;MLEAF=0.500;MQ=52.57;MQRankSum=-7.448;QD=1.69;ReadPosRankSum=-7.424;SOR=1.724 GT:AD:DP:GQ:PL 0/1:257,40:297:99:509,0,6410 1 152192293 . C T 7696.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.079;CNN_1D=-6.629;DP=263;ExcessHet=3.0103;FS=3.060;MLEAC=2;MLEAF=1.00;MQ=53.94;MQRankSum=-0.958;QD=29.26;ReadPosRankSum=0.086;SOR=0.272 GT:AD:DP:GQ:PL 1/1:1,262:263:99:7710,782,0 1 152192395 . G A 3066.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.903;CNN_1D=-9.649;DP=261;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-0.471;QD=11.75;ReadPosRankSum=-1.070;SOR=0.537 GT:AD:DP:GQ:PL 0/1:127,134:261:99:3074,0,3103 1 152192631 . C T 8654.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.988;CNN_1D=-8.826;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.95;MQRankSum=-0.041;QD=28.75;ReadPosRankSum=-1.125;SOR=0.700 GT:AD:DP:GQ:PL 1/1:2,299:301:99:8668,829,0 1 152192687 . T C 8275.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-6.844;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.95;QD=29.87;SOR=0.700 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8289,830,0 1 152192825 . C T 5893.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.020;CNN_1D=-1.842;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.02;ReadPosRankSum=-0.884;SOR=0.305 GT:AD:DP:GQ:PL 1/1:1,189:190:99:5907,540,0 1 152192978 . T C 4950.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.026;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.95;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4964,512,0 1 152193052 . A G 4523.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.101;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.99;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4537,468,0 1 152193121 . G T 5920.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.455;CNN_1D=-1.989;DP=205;ExcessHet=3.0103;FS=3.031;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.88;ReadPosRankSum=0.222;SOR=0.107 GT:AD:DP:GQ:PL 1/1:2,203:205:99:5934,535,0 1 152193286 . G T 11404.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.458;CNN_1D=-5.159;DP=262;ExcessHet=3.0103;FS=6.071;MLEAC=2;MLEAF=1.00;MQ=59.99;MQRankSum=0.000;QD=28.11;ReadPosRankSum=1.528;SOR=0.147 GT:AD:DP:GQ:PL 1/1:2,259:261:99:11418,642,0 1 152193291 . G T 11445.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.450;CNN_1D=-4.742;DP=265;ExcessHet=3.0103;FS=6.103;MLEAC=2;MLEAF=1.00;MQ=59.99;MQRankSum=0.000;QD=32.46;ReadPosRankSum=1.799;SOR=0.160 GT:AD:DP:GQ:PL 1/1:2,262:264:99:11459,648,0 1 152193544 . A G 6484.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.274;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.54;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,148:148:99:6498,445,0 1 152193547 . G A 6475.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.662;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.12;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,141:141:99:6489,445,0 1 152193851 . C T 3024.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.868;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.94;SOR=0.930 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3038,302,0 1 152195728 . AT A 1732.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.610;CNN_1D=2.228;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.24;ReadPosRankSum=-0.244;SOR=0.402 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1746,170,0 1 152278434 . T G 546.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.834;CNN_1D=-2.896;DP=37;ExcessHet=3.0103;FS=6.303;MLEAC=1;MLEAF=0.500;MQ=38.50;MQRankSum=0.309;QD=14.77;ReadPosRankSum=1.648;SOR=2.833 GT:AD:DP:GQ:PL 0/1:20,17:37:99:554,0,640 1 152279406 . T G 104.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;CNN_1D=-6.389;DP=19;ExcessHet=3.0103;FS=14.211;MLEAC=1;MLEAF=0.500;MQ=35.76;MQRankSum=-2.213;QD=5.51;ReadPosRankSum=0.695;SOR=1.850 GT:AD:DP:GQ:PL 0/1:14,5:19:99:112,0,470 1 152286126 . A G 2135.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;CNN_1D=-6.905;DP=200;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-0.734;SOR=0.859 GT:AD:DP:GQ:PL 0/1:111,89:200:99:2143,0,2809 1 152328784 . C T 2779.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;CNN_1D=-9.661;DP=240;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=0.459;SOR=0.765 GT:AD:DP:GQ:PL 0/1:125,115:240:99:2787,0,3182 1 152383216 . G T 1418.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;CNN_1D=-4.420;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-0.366;SOR=0.703 GT:AD:DP:GQ:PL 0/1:89,61:150:99:1426,0,2124 1 152484129 . G A 6164.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.236;CNN_1D=-5.316;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=0.897;SOR=0.782 GT:AD:DP:GQ:PL 1/1:2,232:234:99:6178,621,0 1 152487979 . C T 4030.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.203;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.20;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4044,413,0 1 152488063 . C T 3389.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.120;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.73;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3403,342,0 1 152681543 . T C 3110.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.418;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.79;SOR=1.431 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3124,303,0 1 152681603 . A G 1857.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;CNN_1D=-5.819;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.485;SOR=0.690 GT:AD:DP:GQ:PL 0/1:97,82:179:99:1865,0,2206 1 152681680 . C CAGCTCTGGGGGCTGCTGT 3453.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;CNN_1D=-7.029;DP=214;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.19;ReadPosRankSum=-1.740;SOR=0.743 GT:AD:DP:GQ:PL 0/1:95,85:180:99:3461,0,3685 1 152692512 . G A 2207.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.097;CNN_1D=-6.198;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-0.057;SOR=0.653 GT:AD:DP:GQ:PL 0/1:95,95:190:99:2215,0,2440 1 152732174 . T C 2366.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;CNN_1D=-6.549;DP=198;ExcessHet=3.0103;FS=3.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=2.787;SOR=0.488 GT:AD:DP:GQ:PL 0/1:101,97:198:99:2374,0,2416 1 152732436 . G C 2208.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.650;CNN_1D=-4.763;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=1.719;SOR=0.702 GT:AD:DP:GQ:PL 0/1:95,87:182:99:2216,0,2225 1 152732567 . G A 1730.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.312;CNN_1D=-5.183;DP=170;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-0.075;SOR=0.800 GT:AD:DP:GQ:PL 0/1:97,72:169:99:1738,0,2285 1 152733301 . T A 2236.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;CNN_1D=-7.969;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=0.645;SOR=0.693 GT:AD:DP:GQ:PL 0/1:106,96:202:99:2244,0,2510 1 152749008 . C CCAGCTCTGGGGGCTGCTG 3326.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;CNN_1D=-13.556;DP=266;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-3.018;QD=18.48;ReadPosRankSum=-3.302;SOR=0.556 GT:AD:DP:GQ:PL 0/1:91,89:180:99:3334,0,4663 1 152944594 . C T 1240.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;CNN_1D=-1.343;DP=109;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=1.134;SOR=0.559 GT:AD:DP:GQ:PL 0/1:54,54:108:99:1248,0,1344 1 153233510 . A G 3415.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.237;CNN_1D=1.007;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.89;ReadPosRankSum=0.246;SOR=0.388 GT:AD:DP:GQ:PL 1/1:3,124:127:99:3429,294,0 1 153233991 . A ACTCTGGCGGCGG 3923.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.277;CNN_1D=0.651;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=0.000;SOR=0.531 GT:AD:DP:GQ:PL 1/1:3,95:98:99:3937,140,0 1 153277423 . C T 776.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;CNN_1D=-0.276;DP=80;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-1.674;SOR=0.813 GT:AD:DP:GQ:PL 0/1:43,36:79:99:784,0,1028 1 153314153 . C A 3461.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.942;CNN_1D=2.249;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.91;ReadPosRankSum=1.272;SOR=0.272 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3475,333,0 1 153315579 . A G 3313.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.921;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.61;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3327,360,0 1 153320372 . T G 2606.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.934;CNN_1D=2.387;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.02;ReadPosRankSum=-0.941;SOR=1.071 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2620,230,0 1 153391729 . G A 4504.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.743;CNN_1D=-2.211;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQRankSum=-0.685;QD=26.81;ReadPosRankSum=-1.360;SOR=0.767 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4518,454,0 1 153391786 . T C 3259.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;CNN_1D=0.666;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQRankSum=-0.578;QD=28.84;ReadPosRankSum=-0.283;SOR=1.189 GT:AD:DP:GQ:PL 1/1:2,111:113:99:3273,290,0 1 153431406 . C G 5070.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.924;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.93;QD=27.86;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5084,545,0 1 153509861 . C T 1387.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;CNN_1D=-4.322;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.491;SOR=0.665 GT:AD:DP:GQ:PL 0/1:81,63:144:99:1395,0,1882 1 153509890 . T C 1341.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;CNN_1D=-3.695;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.326;SOR=0.680 GT:AD:DP:GQ:PL 0/1:77,62:139:99:1349,0,1765 1 153588340 . C T 1544.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;CNN_1D=-3.762;DP=141;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=1.320;SOR=0.752 GT:AD:DP:GQ:PL 0/1:72,68:140:99:1552,0,1620 1 153907305 . G GC 1808.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;CNN_1D=-6.301;DP=159;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=13.70;ReadPosRankSum=4.408;SOR=0.877 GT:AD:DP:GQ:PL 0/1:75,57:132:99:1816,0,3280 1 153907306 . T TGC 2307.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;CNN_1D=-4.439;DP=156;ExcessHet=3.0103;FS=2.286;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=17.09;ReadPosRankSum=4.408;SOR=0.853 GT:AD:DP:GQ:PL 0/1:70,65:135:99:2315,0,3008 1 153913770 . A G 1194.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;CNN_1D=0.254;DP=90;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=-0.225;SOR=0.512 GT:AD:DP:GQ:PL 0/1:38,52:90:99:1202,0,898 1 154108387 . G A 2476.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.875;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.06;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2490,283,0 1 154178079 . G A 1182.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;CNN_1D=-2.083;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.547;SOR=0.687 GT:AD:DP:GQ:PL 0/1:64,55:119:99:1190,0,1433 1 154293675 . G A 1340.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;CNN_1D=0.030;DP=107;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=0.674;QD=12.53;ReadPosRankSum=-0.769;SOR=0.652 GT:AD:DP:GQ:PL 0/1:47,60:107:99:1348,0,964 1 154295592 . C T 1576.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;CNN_1D=-5.735;DP=161;ExcessHet=3.0103;FS=2.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-2.107;SOR=0.710 GT:AD:DP:GQ:PL 0/1:87,74:161:99:1584,0,1964 1 154296076 . T C 1579.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;CNN_1D=-2.599;DP=129;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=0.125;SOR=0.542 GT:AD:DP:GQ:PL 0/1:62,67:129:99:1587,0,1529 1 154296812 . C T 292.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;CNN_1D=-0.127;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.879;SOR=0.693 GT:AD:DP:GQ:PL 0/1:38,14:52:99:300,0,882 1 154303976 . T C 1874.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;CNN_1D=-5.320;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=0.575;SOR=0.652 GT:AD:DP:GQ:PL 0/1:86,84:170:99:1882,0,1941 1 154426970 . A C 914.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;CNN_1D=-3.470;DP=119;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.443;SOR=0.603 GT:AD:DP:GQ:PL 0/1:72,47:119:99:922,0,1696 1 154474131 . C G 2190.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.339;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.00;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2204,219,0 1 154516477 . G A 645.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;CNN_1D=-0.520;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=2.138;SOR=0.719 GT:AD:DP:GQ:PL 0/1:55,33:88:99:653,0,1249 1 154516571 . T C 1817.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.690;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.31;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1831,186,0 1 154557685 . C T 2257.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.709;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.52;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2271,245,0 1 154573967 . T C 5217.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.780;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.51;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5231,513,0 1 154574820 . T C 4704.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.132;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.40;SOR=0.770 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4718,479,0 1 154575040 . C T 4852.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.511;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.05;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4866,501,0 1 154744807 . C G 3035.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.608;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.76;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3049,306,0 1 154744852 . A G 1921.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.233;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.25;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1935,204,0 1 154842199 . G GGCTGCTGCTGCTGCT 2026.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;CNN_1D=-5.160;DP=170;ExcessHet=3.0103;FS=8.461;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.000;QD=17.78;ReadPosRankSum=0.346;SOR=1.053 GT:AD:DP:GQ:PL 0/1:56,58:114:99:2034,0,2321 1 154924015 . C T 718.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;CNN_1D=2.106;DP=50;ExcessHet=3.0103;FS=4.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=-1.516;SOR=0.247 GT:AD:DP:GQ:PL 0/1:20,30:50:99:726,0,414 1 154987526 . C T 3460.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.361;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.57;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3474,351,0 1 154988957 . A G 5936.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.969;CNN_1D=-3.417;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.40;ReadPosRankSum=-0.206;SOR=0.762 GT:AD:DP:GQ:PL 1/1:2,207:209:99:5950,577,0 1 155006091 . A G 2126.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;CNN_1D=-5.503;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=-0.365;SOR=0.664 GT:AD:DP:GQ:PL 0/1:93,87:180:99:2134,0,2194 1 155006999 . C T 1754.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;CNN_1D=-4.787;DP=162;ExcessHet=3.0103;FS=4.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=1.753;SOR=0.850 GT:AD:DP:GQ:PL 0/1:84,76:160:99:1762,0,1961 1 155019710 . A C 1521.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;CNN_1D=-4.150;DP=148;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=0.944;SOR=0.816 GT:AD:DP:GQ:PL 0/1:79,69:148:99:1529,0,1704 1 155026942 . A C 928.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;CNN_1D=-0.939;DP=95;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=0.781;SOR=0.596 GT:AD:DP:GQ:PL 0/1:51,44:95:99:936,0,1219 1 155030557 . A C 1556.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;CNN_1D=-3.480;DP=140;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-0.540;SOR=0.548 GT:AD:DP:GQ:PL 0/1:72,68:140:99:1564,0,1774 1 155033308 . G A 756.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;CNN_1D=2.822;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=2.514;SOR=0.566 GT:AD:DP:GQ:PL 0/1:17,31:48:99:764,0,573 1 155033317 . T C 223.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;CNN_1D=-0.005;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.907;SOR=0.897 GT:AD:DP:GQ:PL 0/1:29,14:43:99:231,0,1209 1 155106054 . A G 1590.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;CNN_1D=-4.736;DP=149;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-0.308;SOR=0.892 GT:AD:DP:GQ:PL 0/1:74,75:149:99:1598,0,1673 1 155106227 . A T 1049.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.327;CNN_1D=-1.349;DP=100;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=1.251;SOR=0.791 GT:AD:DP:GQ:PL 0/1:58,42:100:99:1057,0,1386 1 155106550 . A G 1210.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;CNN_1D=0.786;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-1.305;SOR=0.633 GT:AD:DP:GQ:PL 0/1:33,51:84:99:1218,0,726 1 155149718 . G A 1296.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;CNN_1D=-0.697;DP=111;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=1.797;SOR=0.439 GT:AD:DP:GQ:PL 0/1:52,58:110:99:1304,0,1105 1 155162067 . C T 1612.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.466;CNN_1D=-2.456;DP=132;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=1.861;SOR=0.850 GT:AD:DP:GQ:PL 0/1:70,62:132:99:1620,0,1615 1 155178782 . A T 1719.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;CNN_1D=-1.939;DP=121;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.733;SOR=0.573 GT:AD:DP:GQ:PL 0/1:54,67:121:99:1727,0,1223 1 155183047 . T C 118.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;CNN_1D=-1.518;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=34.12;MQRankSum=0.000;QD=19.77;ReadPosRankSum=-0.842;SOR=1.329 GT:AD:DP:GQ:PL 0/1:2,4:6:52:126,0,52 1 155294274 . A G 667.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.450;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.00;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,23:23:69:681,69,0 1 155408493 . G A 1375.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;CNN_1D=-0.341;DP=102;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=0.075;SOR=0.652 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1383,0,1061 1 155408635 . T C 3896.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.269;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.44;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3910,411,0 1 155658085 . T C 1924.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.514;CNN_1D=-4.504;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-0.033;SOR=0.718 GT:AD:DP:GQ:PL 0/1:86,79:165:99:1932,0,1907 1 155679584 . G A 738.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;CNN_1D=-2.707;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=1.425;SOR=0.685 GT:AD:DP:GQ:PL 0/1:68,39:107:99:746,0,1593 1 155699118 . T C 1162.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;CNN_1D=-2.617;DP=117;ExcessHet=3.0103;FS=3.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.716;SOR=0.413 GT:AD:DP:GQ:PL 0/1:62,55:117:99:1170,0,1460 1 155837865 . G C 3027.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.228;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.11;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3041,312,0 1 155838267 . T C 5974.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.646;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.45;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5988,630,0 1 155838284 . A G 2408.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;CNN_1D=-5.199;DP=186;ExcessHet=3.0103;FS=8.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=1.050;SOR=0.390 GT:AD:DP:GQ:PL 0/1:86,99:185:99:2416,0,2163 1 155870416 . G A 951.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;CNN_1D=0.194;DP=94;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=2.141;SOR=0.602 GT:AD:DP:GQ:PL 0/1:51,43:94:99:959,0,1236 1 155880573 . C G 1345.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;CNN_1D=-0.717;DP=102;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=0.412;SOR=0.710 GT:AD:DP:GQ:PL 0/1:49,53:102:99:1353,0,1111 1 155911589 . C T 1350.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;CNN_1D=-0.512;DP=107;ExcessHet=3.0103;FS=6.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=0.635;SOR=0.328 GT:AD:DP:GQ:PL 0/1:49,58:107:99:1358,0,1167 1 155912486 . T C 3735.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.191;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.87;SOR=1.153 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3749,402,0 1 156011444 . T C 1502.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;CNN_1D=-2.342;DP=111;ExcessHet=3.0103;FS=3.535;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-1.340;QD=13.66;ReadPosRankSum=1.083;SOR=0.856 GT:AD:DP:GQ:PL 0/1:49,61:110:99:1510,0,989 1 156025096 . C T 1404.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;CNN_1D=-2.674;DP=126;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=1.701;SOR=0.471 GT:AD:DP:GQ:PL 0/1:62,64:126:99:1412,0,1379 1 156105028 . T C 840.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;CNN_1D=-1.414;DP=87;ExcessHet=3.0103;FS=2.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-0.601;SOR=0.993 GT:AD:DP:GQ:PL 0/1:47,40:87:99:848,0,1071 1 156106185 . T C 878.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;CNN_1D=-2.087;DP=92;ExcessHet=3.0103;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=0.685;SOR=1.022 GT:AD:DP:GQ:PL 0/1:49,43:92:99:886,0,1100 1 156146218 . C T 1049.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;CNN_1D=-2.177;DP=91;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-1.891;SOR=0.983 GT:AD:DP:GQ:PL 0/1:47,44:91:99:1057,0,1112 1 156202173 . A G 1326.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;CNN_1D=-2.603;DP=126;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=1.734;SOR=0.841 GT:AD:DP:GQ:PL 0/1:65,61:126:99:1334,0,1468 1 156233189 . C T 877.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;CNN_1D=-2.791;DP=102;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-1.742;SOR=0.830 GT:AD:DP:GQ:PL 0/1:62,40:102:99:885,0,1504 1 156255456 . G A 1909.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;CNN_1D=-4.537;DP=171;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=0.344;SOR=0.632 GT:AD:DP:GQ:PL 0/1:92,78:170:99:1917,0,2220 1 156263940 . T C 1227.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;CNN_1D=-1.961;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=0.710;SOR=0.660 GT:AD:DP:GQ:PL 0/1:61,51:112:99:1235,0,1510 1 156264000 . G A 926.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;CNN_1D=0.138;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.420;SOR=0.633 GT:AD:DP:GQ:PL 0/1:41,37:78:99:934,0,1055 1 156347834 . T A 1008.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;CNN_1D=-0.446;DP=98;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.555;SOR=0.632 GT:AD:DP:GQ:PL 0/1:51,47:98:99:1016,0,1114 1 156351699 . G A 4231.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.738;CNN_1D=-0.474;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.95;ReadPosRankSum=-0.637;SOR=0.733 GT:AD:DP:GQ:PL 1/1:6,151:157:99:4245,323,0 1 156354293 . A G 2329.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855;CNN_1D=-6.486;DP=193;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=-1.320;SOR=0.625 GT:AD:DP:GQ:PL 0/1:88,105:193:99:2337,0,2030 1 156354347 . TC T 2536.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;CNN_1D=-10.622;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=-0.093;SOR=0.674 GT:AD:DP:GQ:PL 0/1:107,105:212:99:2544,0,2577 1 156354367 . A G 6003.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.591;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.45;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6017,633,0 1 156446903 . T C 3454.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.912;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.08;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3468,369,0 1 156450740 . G A 3681.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.275;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.32;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3695,390,0 1 156499969 . T C 925.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;CNN_1D=-0.533;DP=92;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-1.139;SOR=0.591 GT:AD:DP:GQ:PL 0/1:52,40:92:99:933,0,1153 1 156518379 . G A 997.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;CNN_1D=-1.244;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.505;SOR=0.723 GT:AD:DP:GQ:PL 0/1:59,45:104:99:1005,0,1431 1 156526387 . C G 1362.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;CNN_1D=-2.281;DP=117;ExcessHet=3.0103;FS=5.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.308;SOR=0.872 GT:AD:DP:GQ:PL 0/1:57,60:117:99:1370,0,1273 1 156526444 . T C 3096.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.262;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.15;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3110,329,0 1 156532977 . T C 2560.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.054;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.44;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2574,270,0 1 156536221 . G C 3336.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.119;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.80;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3350,360,0 1 156536251 . T C 3834.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.492;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.40;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3848,405,0 1 156551848 . A G 700.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;CNN_1D=0.048;DP=71;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-1.211;SOR=0.961 GT:AD:DP:GQ:PL 0/1:41,30:71:99:708,0,1040 1 156556321 . G A 3346.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.426;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.85;SOR=0.800 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3360,348,0 1 156561651 . G C 2283.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.240;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.04;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2297,228,0 1 156562008 . G A 1653.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.698;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.79;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1667,156,0 1 156563726 . A C 4183.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.009;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.05;SOR=0.840 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4197,431,0 1 156563813 . G A 4086.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.149;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.86;QD=27.80;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4100,439,0 1 156563852 . C T 3154.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.072;CNN_1D=1.093;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.50;ReadPosRankSum=-0.373;SOR=0.569 GT:AD:DP:GQ:PL 1/1:3,116:119:99:3168,274,0 1 156565049 . A AAC 7604.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.586;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.04;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,170:170:99:7618,515,0 1 156622252 . G A 1286.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;CNN_1D=-2.540;DP=118;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.969;SOR=0.771 GT:AD:DP:GQ:PL 0/1:63,55:118:99:1294,0,1630 1 156622525 . C A 1896.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800;CNN_1D=-4.730;DP=157;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=0.476;SOR=0.725 GT:AD:DP:GQ:PL 0/1:78,79:157:99:1904,0,1954 1 156639636 . G A 1892.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;CNN_1D=-3.485;DP=145;ExcessHet=3.0103;FS=2.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.992;SOR=0.836 GT:AD:DP:GQ:PL 0/1:69,76:145:99:1900,0,1587 1 156639753 . G A 1652.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;CNN_1D=-3.620;DP=142;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.501;SOR=0.769 GT:AD:DP:GQ:PL 0/1:75,67:142:99:1660,0,1807 1 156640156 . G A 2020.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;CNN_1D=-6.937;DP=191;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-1.039;SOR=0.593 GT:AD:DP:GQ:PL 0/1:104,86:190:99:2028,0,2578 1 156640308 . C T 1551.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;CNN_1D=-4.776;DP=151;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.844;SOR=0.922 GT:AD:DP:GQ:PL 0/1:82,69:151:99:1559,0,1873 1 156640503 . C T 1700.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;CNN_1D=-4.589;DP=155;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-1.108;SOR=0.594 GT:AD:DP:GQ:PL 0/1:84,71:155:99:1708,0,2064 1 156640678 . G A 954.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;CNN_1D=-4.008;DP=111;ExcessHet=3.0103;FS=5.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=1.005;SOR=1.302 GT:AD:DP:GQ:PL 0/1:59,52:111:99:962,0,1345 1 156641537 . C T 2029.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;CNN_1D=-4.665;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=0.715;SOR=0.708 GT:AD:DP:GQ:PL 0/1:76,89:165:99:2037,0,1709 1 156646668 . A G 1907.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.327;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.89;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1921,198,0 1 156705593 . G C 2373.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.079;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.92;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2387,254,0 1 156713512 . C T 3365.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.637;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.76;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3379,349,0 1 156737969 . C T 1565.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.498;CNN_1D=-4.725;DP=154;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.748;SOR=0.770 GT:AD:DP:GQ:PL 0/1:82,72:154:99:1573,0,2128 1 156784982 . T C 939.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;CNN_1D=1.404;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=-2.005;SOR=0.647 GT:AD:DP:GQ:PL 0/1:29,39:68:99:947,0,664 1 156785617 . G A 2337.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;CNN_1D=-9.904;DP=250;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-0.513;SOR=0.612 GT:AD:DP:GQ:PL 0/1:141,109:250:99:2345,0,3159 1 156848995 . C T 3990.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.443;CNN_1D=-0.323;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.78;ReadPosRankSum=-1.651;SOR=0.223 GT:AD:DP:GQ:PL 1/1:1,148:149:99:4004,407,0 1 156875107 . C A 4401.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.045;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.22;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,98:98:99:4415,298,0 1 156877457 . T C 4504.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.004;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.33;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4518,476,0 1 156883546 . A G 1159.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;CNN_1D=-1.900;DP=100;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=0.145;SOR=0.845 GT:AD:DP:GQ:PL 0/1:47,53:100:99:1167,0,1011 1 156902259 . G A 1661.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;CNN_1D=-3.718;DP=141;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-1.026;SOR=0.775 GT:AD:DP:GQ:PL 0/1:65,76:141:99:1669,0,1403 1 156907081 . T C 1444.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;CNN_1D=-2.350;DP=116;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-1.310;SOR=1.032 GT:AD:DP:GQ:PL 0/1:56,59:115:99:1452,0,1296 1 156907115 . T C 1751.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;CNN_1D=-3.192;DP=136;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=1.062;SOR=0.842 GT:AD:DP:GQ:PL 0/1:64,72:136:99:1759,0,1420 1 157062696 . G T 1379.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.583;CNN_1D=-3.672;DP=139;ExcessHet=3.0103;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-2.386;SOR=0.881 GT:AD:DP:GQ:PL 0/1:74,65:139:99:1387,0,1924 1 157095470 . A G 2442.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;CNN_1D=-6.163;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=3.199;SOR=0.723 GT:AD:DP:GQ:PL 0/1:90,108:198:99:2450,0,2035 1 157485561 . G A 3545.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.139;CNN_1D=1.075;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.48;ReadPosRankSum=0.833;SOR=0.948 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3559,340,0 1 157508882 . C T 2741.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.368;CNN_1D=2.775;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.55;ReadPosRankSum=0.596;SOR=0.541 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2755,249,0 1 157509025 . C T 4737.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.756;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.37;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4751,501,0 1 157514097 . A G 3225.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.368;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.14;SOR=1.380 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3239,321,0 1 157557701 . G A 2709.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.296;CNN_1D=2.492;DP=91;ExcessHet=3.0103;FS=2.690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.77;ReadPosRankSum=0.352;SOR=1.718 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2723,223,0 1 157566136 . G A 886.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;CNN_1D=0.113;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-1.894;SOR=0.606 GT:AD:DP:GQ:PL 0/1:42,38:80:99:894,0,970 1 157771880 . C T 6469.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.138;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.23;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6483,641,0 1 157802979 . C T 1785.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834;CNN_1D=2.983;DP=60;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.75;ReadPosRankSum=-0.896;SOR=1.493 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1799,138,0 1 158057633 . C G 1083.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;CNN_1D=-1.655;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.249;SOR=0.736 GT:AD:DP:GQ:PL 0/1:51,48:99:99:1091,0,1179 1 158058109 . C A 1350.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115;CNN_1D=-0.964;DP=108;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=0.382;SOR=0.519 GT:AD:DP:GQ:PL 0/1:48,59:107:99:1358,0,1143 1 158324425 . A G 949.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;CNN_1D=-1.793;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=0.749;SOR=0.673 GT:AD:DP:GQ:PL 0/1:52,45:97:99:957,0,1176 1 158436299 . T C 1412.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.456;CNN_1D=0.266;DP=99;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=0.409;SOR=0.865 GT:AD:DP:GQ:PL 0/1:44,55:99:99:1420,0,930 1 158450314 . A G 1789.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;CNN_1D=-3.371;DP=145;ExcessHet=3.0103;FS=4.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-0.900;SOR=0.935 GT:AD:DP:GQ:PL 0/1:71,74:145:99:1797,0,1756 1 158450382 . C T 1503.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;CNN_1D=-3.617;DP=131;ExcessHet=3.0103;FS=6.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=1.159;SOR=1.249 GT:AD:DP:GQ:PL 0/1:70,61:131:99:1511,0,1794 1 158517142 . C T 1265.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;CNN_1D=-3.299;DP=130;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=0.848;SOR=0.854 GT:AD:DP:GQ:PL 0/1:75,55:130:99:1273,0,1683 1 158517353 . G A 1445.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;CNN_1D=-1.160;DP=115;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-0.202;SOR=0.470 GT:AD:DP:GQ:PL 0/1:53,62:115:99:1453,0,1246 1 158532614 . G A 1198.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;CNN_1D=-3.451;DP=135;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-1.193;SOR=0.535 GT:AD:DP:GQ:PL 0/1:79,56:135:99:1206,0,1737 1 158533140 . A G 755.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;CNN_1D=-2.596;DP=119;ExcessHet=3.0103;FS=2.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=1.111;SOR=0.547 GT:AD:DP:GQ:PL 0/1:82,37:119:99:763,0,2006 1 158533224 . A G 1375.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;CNN_1D=-0.904;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-0.345;SOR=0.724 GT:AD:DP:GQ:PL 0/1:54,57:111:99:1383,0,1341 1 158549264 . G A 1800.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.360;CNN_1D=-4.201;DP=168;ExcessHet=3.0103;FS=3.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=1.958;SOR=0.650 GT:AD:DP:GQ:PL 0/1:88,80:168:99:1808,0,2214 1 158549420 . C T 2407.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;CNN_1D=-7.642;DP=215;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-0.336;SOR=0.791 GT:AD:DP:GQ:PL 0/1:108,105:213:99:2415,0,2403 1 158549492 . C T 4312.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;CNN_1D=-5.019;DP=204;ExcessHet=3.0103;FS=3.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.24;ReadPosRankSum=0.560;SOR=0.871 GT:AD:DP:GQ:PL 0/1:93,110:203:99:4320,0,3758 1 158549511 . A G 4554.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;CNN_1D=-4.302;DP=208;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.00;ReadPosRankSum=-0.210;SOR=0.644 GT:AD:DP:GQ:PL 0/1:85,122:207:99:4562,0,3550 1 158577109 . A C 2252.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.031;CNN_1D=-4.885;DP=167;ExcessHet=3.0103;FS=5.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=-0.748;SOR=1.099 GT:AD:DP:GQ:PL 0/1:75,92:167:99:2260,0,1491 1 158582646 . T C 1086.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;CNN_1D=-0.826;DP=96;ExcessHet=3.0103;FS=3.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-0.837;SOR=0.706 GT:AD:DP:GQ:PL 0/1:50,46:96:99:1094,0,1143 1 158584091 . A G 638.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.050;CNN_1D=-0.533;DP=64;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.484;SOR=1.149 GT:AD:DP:GQ:PL 0/1:35,28:63:99:646,0,1526 1 158584103 . G GAA 886.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;CNN_1D=1.090;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=1.933;SOR=0.818 GT:AD:DP:GQ:PL 0/1:33,26:59:99:894,0,1001 1 158619728 . A C 2237.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.553;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.96;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2251,239,0 1 158647495 . A T 3733.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.071;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.07;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3747,399,0 1 158647631 . T A 2984.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.654;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.89;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2998,320,0 1 158655036 . G A 4468.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.739;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.10;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4482,477,0 1 158656281 . T C 1228.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.850;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.70;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1242,120,0 1 158687163 . G A 1061.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;CNN_1D=-4.607;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-2.235;SOR=0.712 GT:AD:DP:GQ:PL 0/1:95,49:144:99:1069,0,2334 1 158687224 . G A 1531.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;CNN_1D=-4.332;DP=152;ExcessHet=3.0103;FS=2.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=1.142;SOR=0.880 GT:AD:DP:GQ:PL 0/1:88,64:152:99:1539,0,2287 1 158735595 . C T 1158.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;CNN_1D=-3.560;DP=131;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=1.441;SOR=0.630 GT:AD:DP:GQ:PL 0/1:77,54:131:99:1166,0,1812 1 158735691 . T C 1582.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;CNN_1D=-4.750;DP=156;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=2.244;SOR=0.706 GT:AD:DP:GQ:PL 0/1:84,72:156:99:1590,0,1994 1 158735740 . A G 1758.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;CNN_1D=-4.023;DP=149;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=0.372;SOR=0.753 GT:AD:DP:GQ:PL 0/1:75,73:148:99:1766,0,1786 1 158735892 . A G 2188.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;CNN_1D=-4.827;DP=161;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-1.934;SOR=0.641 GT:AD:DP:GQ:PL 0/1:73,88:161:99:2196,0,1751 1 158736215 . G A 4589.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;CNN_1D=-0.919;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.86;ReadPosRankSum=-0.864;SOR=0.934 GT:AD:DP:GQ:PL 1/1:4,155:159:99:4603,377,0 1 158736445 . C T 1574.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.511;CNN_1D=-5.580;DP=170;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-1.474;SOR=0.602 GT:AD:DP:GQ:PL 0/1:96,74:170:99:1582,0,2419 1 158813819 . A G 2102.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;CNN_1D=-5.096;DP=164;ExcessHet=3.0103;FS=5.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-0.527;SOR=1.049 GT:AD:DP:GQ:PL 0/1:70,94:164:99:2110,0,1462 1 158986477 . G C 3389.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.677;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.01;SOR=1.052 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3403,362,0 1 159002377 . C A 4612.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.192;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.95;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4626,494,0 1 159002389 . T A 4546.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;CNN_1D=-1.088;DP=168;ExcessHet=3.0103;FS=3.142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.22;ReadPosRankSum=1.629;SOR=0.339 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4560,490,0 1 159032486 . GT G 1383.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;CNN_1D=-0.007;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=1.216;SOR=0.741 GT:AD:DP:GQ:PL 0/1:41,59:100:99:1391,0,822 1 159169641 . T C 3156.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.307;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.30;SOR=0.910 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3170,360,0 1 159175354 . G A 2332.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;CNN_1D=-7.889;DP=214;ExcessHet=3.0103;FS=4.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-0.163;SOR=1.015 GT:AD:DP:GQ:PL 0/1:115,99:214:99:2340,0,2716 1 159409734 . G T 4048.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.635;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.31;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4062,428,0 1 159409857 . A G 3924.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.178;CNN_1D=1.505;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.42;ReadPosRankSum=-1.859;SOR=0.709 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3938,338,0 1 159505297 . C T 4176.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.351;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.04;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4190,417,0 1 159558258 . A G 2121.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;CNN_1D=-5.568;DP=181;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-0.729;SOR=0.772 GT:AD:DP:GQ:PL 0/1:92,89:181:99:2129,0,2162 1 159683438 . C G 1528.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;CNN_1D=-4.638;DP=158;ExcessHet=3.0103;FS=2.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.700;SOR=0.911 GT:AD:DP:GQ:PL 0/1:92,66:158:99:1536,0,2374 1 159752066 . G A 2351.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;CNN_1D=-4.268;DP=174;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.036;SOR=0.625 GT:AD:DP:GQ:PL 0/1:75,99:174:99:2359,0,1599 1 159824967 . G C 3681.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.338;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.93;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3695,368,0 1 159827747 . G A 1278.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.144;CNN_1D=0.516;DP=94;ExcessHet=3.0103;FS=3.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=2.274;SOR=0.564 GT:AD:DP:GQ:PL 0/1:44,50:94:99:1286,0,1219 1 159897681 . TAA T,TA 695.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.737;CNN_1D=-0.337;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=1.187;SOR=0.570 GT:AD:DP:GQ:PL 1/2:7,16,21:44:99:712,342,492,160,0,188 1 159912899 . C T 1816.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910;CNN_1D=-5.020;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=1.858;SOR=0.653 GT:AD:DP:GQ:PL 0/1:73,80:153:99:1824,0,1745 1 159923111 . T G 3373.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.894;CNN_1D=2.551;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.39;ReadPosRankSum=-1.139;SOR=0.368 GT:AD:DP:GQ:PL 1/1:1,110:111:99:3387,322,0 1 160098543 . G A 5007.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.148;CNN_1D=-2.609;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQRankSum=-0.322;QD=27.36;ReadPosRankSum=0.019;SOR=0.251 GT:AD:DP:GQ:PL 1/1:1,182:183:99:5021,515,0 1 160124875 . G A 3605.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.016;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.31;SOR=1.000 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3619,396,0 1 160134205 . C T 2002.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.278;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.88;SOR=1.410 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2016,201,0 1 160136350 . G A 2008.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;CNN_1D=-5.004;DP=162;ExcessHet=3.0103;FS=4.627;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-0.950;QD=12.40;ReadPosRankSum=2.141;SOR=1.046 GT:AD:DP:GQ:PL 0/1:74,88:162:99:2016,0,1566 1 160141196 . C T 4044.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.144;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.48;SOR=0.780 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4058,424,0 1 160160801 . T C 1325.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;CNN_1D=-3.032;DP=128;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=1.336;SOR=0.925 GT:AD:DP:GQ:PL 0/1:70,58:128:99:1333,0,1653 1 160268981 . G A 1015.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;CNN_1D=-4.072;DP=131;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=1.509;SOR=0.876 GT:AD:DP:GQ:PL 0/1:81,48:129:99:1023,0,1825 1 160303416 . G A 1338.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;CNN_1D=-1.036;DP=111;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=0.949;SOR=0.521 GT:AD:DP:GQ:PL 0/1:52,59:111:99:1346,0,1174 1 160321065 . A G 863.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.600;CNN_1D=-2.060;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=0.112;SOR=0.727 GT:AD:DP:GQ:PL 0/1:58,38:96:99:871,0,1277 1 160321499 . C T 1056.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;CNN_1D=-0.694;DP=95;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-0.063;SOR=0.513 GT:AD:DP:GQ:PL 0/1:48,47:95:99:1064,0,1130 1 160323903 . C G 907.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;CNN_1D=-2.723;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-1.728;SOR=0.615 GT:AD:DP:GQ:PL 0/1:59,44:103:99:915,0,1393 1 160393905 . A G 1717.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;CNN_1D=-6.155;DP=178;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=0.636;SOR=0.997 GT:AD:DP:GQ:PL 0/1:103,75:178:99:1725,0,2480 1 160394937 . A C 1377.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.255;CNN_1D=-2.202;DP=110;ExcessHet=3.0103;FS=4.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-2.016;SOR=1.199 GT:AD:DP:GQ:PL 0/1:54,56:110:99:1385,0,1196 1 160395003 . G A 1715.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;CNN_1D=-3.113;DP=154;ExcessHet=3.0103;FS=3.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=0.916;SOR=0.538 GT:AD:DP:GQ:PL 0/1:78,76:154:99:1723,0,1699 1 160654786 . G A 1213.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;CNN_1D=-3.181;DP=124;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-2.586;SOR=0.800 GT:AD:DP:GQ:PL 0/1:70,54:124:99:1221,0,1664 1 160793442 . A G 2351.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;CNN_1D=-4.572;DP=170;ExcessHet=3.0103;FS=2.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=1.353;SOR=0.698 GT:AD:DP:GQ:PL 0/1:68,101:169:99:2359,0,1437 1 160793560 . A G 1245.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;CNN_1D=-1.323;DP=109;ExcessHet=3.0103;FS=2.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.768;SOR=0.941 GT:AD:DP:GQ:PL 0/1:57,52:109:99:1253,0,1272 1 160793962 . G C 1353.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;CNN_1D=-4.164;DP=140;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-1.515;SOR=0.814 GT:AD:DP:GQ:PL 0/1:79,61:140:99:1361,0,1863 1 160850936 . T C 797.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;CNN_1D=-0.975;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=1.638;SOR=0.625 GT:AD:DP:GQ:PL 0/1:50,36:86:99:805,0,1113 1 160851826 . A T 1440.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;CNN_1D=-5.491;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-3.928;QD=10.29;ReadPosRankSum=-1.342;SOR=0.710 GT:AD:DP:GQ:PL 0/1:73,67:140:99:1448,0,1598 1 160851894 . G A 1212.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;CNN_1D=-1.567;DP=114;ExcessHet=3.0103;FS=4.576;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=0.092;QD=10.64;ReadPosRankSum=0.935;SOR=0.643 GT:AD:DP:GQ:PL 0/1:58,56:114:99:1220,0,1339 1 160920966 . C T 3127.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.237;CNN_1D=0.848;DP=120;ExcessHet=3.0103;FS=1.695;MLEAC=2;MLEAF=1.00;MQ=59.71;MQRankSum=-0.340;QD=26.06;ReadPosRankSum=-0.053;SOR=0.513 GT:AD:DP:GQ:PL 1/1:5,115:120:99:3141,221,0 1 160969930 . A C 1114.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.270;CNN_1D=-0.912;DP=84;ExcessHet=3.0103;FS=2.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=0.761;SOR=0.920 GT:AD:DP:GQ:PL 0/1:43,41:84:99:1122,0,992 1 160971146 . A G 4268.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.152;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.34;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,117:117:99:4282,352,0 1 161019040 . G C 2247.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372;CNN_1D=-5.440;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=0.111;SOR=0.740 GT:AD:DP:GQ:PL 0/1:79,99:178:99:2255,0,1880 1 161023133 . G A 600.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.433;CNN_1D=-1.494;DP=88;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=0.808;SOR=0.867 GT:AD:DP:GQ:PL 0/1:59,29:88:99:608,0,1299 1 161068836 . A C 676.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;CNN_1D=0.132;DP=67;ExcessHet=3.0103;FS=2.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.874;SOR=1.032 GT:AD:DP:GQ:PL 0/1:38,29:67:99:684,0,921 1 161088583 . T G 1161.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;CNN_1D=-1.613;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=1.119;SOR=0.656 GT:AD:DP:GQ:PL 0/1:54,55:109:99:1169,0,1300 1 161094190 . A G 844.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;CNN_1D=-3.560;DP=124;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-0.546;SOR=0.794 GT:AD:DP:GQ:PL 0/1:81,43:124:99:852,0,1926 1 161145005 . C T 678.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;CNN_1D=-1.190;DP=72;ExcessHet=3.0103;FS=6.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-1.028;SOR=1.563 GT:AD:DP:GQ:PL 0/1:42,30:72:99:686,0,990 1 161161284 . G C 1417.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;CNN_1D=-0.622;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=1.955;SOR=0.639 GT:AD:DP:GQ:PL 0/1:53,58:111:99:1425,0,1310 1 161163037 . T C 2365.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.451;CNN_1D=3.143;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.88;ReadPosRankSum=1.655;SOR=0.319 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2379,229,0 1 161166338 . G C 2118.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;CNN_1D=-3.490;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=0.253;SOR=0.660 GT:AD:DP:GQ:PL 0/1:69,91:160:99:2126,0,1565 1 161172233 . C A 1170.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;CNN_1D=-1.995;DP=111;ExcessHet=3.0103;FS=7.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.884;SOR=0.895 GT:AD:DP:GQ:PL 0/1:59,52:111:99:1178,0,1371 1 161198530 . C T 1428.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;CNN_1D=-2.781;DP=131;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=0.194;SOR=0.586 GT:AD:DP:GQ:PL 0/1:70,61:131:99:1436,0,1655 1 161479745 . A G 1832.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;CNN_1D=-10.377;DP=229;ExcessHet=3.0103;FS=3.781;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.695;QD=8.07;ReadPosRankSum=-1.517;SOR=0.953 GT:AD:DP:GQ:PL 0/1:134,93:227:99:1840,0,3026 1 161495477 . A T 2094.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;CNN_1D=-5.483;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=0.557;QD=11.83;ReadPosRankSum=1.117;SOR=0.684 GT:AD:DP:GQ:PL 0/1:92,85:177:99:2102,0,2202 1 161495885 . T C 5954.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.058;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.24;QD=29.33;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5968,608,0 1 161514542 . A C 4272.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.402;CNN_1D=-1.717;DP=149;ExcessHet=3.0103;FS=2.829;MLEAC=2;MLEAF=1.00;MQ=51.90;MQRankSum=-1.401;QD=28.67;ReadPosRankSum=0.841;SOR=0.230 GT:AD:DP:GQ:PL 1/1:2,147:149:99:4286,398,0 1 161518333 . A T 2014.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;CNN_1D=-6.730;DP=223;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=2.024;QD=9.07;ReadPosRankSum=0.424;SOR=0.581 GT:AD:DP:GQ:PL 0/1:127,95:222:99:2022,0,2871 1 161599693 . T C 3341.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.936;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=42.54;QD=28.08;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3355,356,0 1 161680258 . G A 1523.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.178;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.29;SOR=0.770 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1537,156,0 1 161683136 . G A 2143.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.396;CNN_1D=4.177;DP=77;ExcessHet=3.0103;FS=2.804;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.83;ReadPosRankSum=-0.160;SOR=0.241 GT:AD:DP:GQ:PL 1/1:2,75:77:99:2157,153,0 1 161695639 . G T 1730.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.347;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.46;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1744,188,0 1 161696782 . G C 1986.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.266;CNN_1D=3.640;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.37;ReadPosRankSum=-0.347;SOR=0.348 GT:AD:DP:GQ:PL 1/1:1,69:70:99:2000,171,0 1 161721707 . C T 535.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;CNN_1D=-0.251;DP=71;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=0.622;SOR=0.821 GT:AD:DP:GQ:PL 0/1:44,27:71:99:543,0,1037 1 161751741 . A G 958.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;CNN_1D=0.654;DP=84;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=0.139;SOR=0.793 GT:AD:DP:GQ:PL 0/1:43,41:84:99:966,0,902 1 161823011 . T A 1647.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.940;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.41;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1661,168,0 1 161928327 . A G 3955.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;CNN_1D=0.831;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.05;ReadPosRankSum=0.898;SOR=0.767 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3969,373,0 1 161967681 . A G 2475.91 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.200;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.13;SOR=1.552 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2494,254,0 1 161976234 . A G 3160.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.998;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.21;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3174,334,0 1 161976272 . G GA,GAA 1122.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.162;CNN_1D=1.556;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=21.17;ReadPosRankSum=-1.264;SOR=0.818 GT:AD:DP:GQ:PL 1/2:5,41,7:53:30:1139,48,30,887,0,1034 1 162344390 . A G 4700.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.780;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.13;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4714,453,0 1 162345091 . G A 3037.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.361;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.65;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3051,318,0 1 162345199 . T G 876.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;CNN_1D=-0.847;DP=92;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-1.517;SOR=0.929 GT:AD:DP:GQ:PL 0/1:52,40:92:99:884,0,1149 1 162766476 . C T 1919.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.767;CNN_1D=2.705;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQRankSum=0.000;QD=26.29;ReadPosRankSum=-0.237;SOR=0.971 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1933,169,0 1 163309219 . A T 1476.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.816;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.84;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1490,165,0 1 165173216 . A G 3989.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.031;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.29;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4003,422,0 1 165218792 . G A 1301.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;CNN_1D=-3.842;DP=139;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=1.426;SOR=0.790 GT:AD:DP:GQ:PL 0/1:76,63:139:99:1309,0,1665 1 165376043 . T C 2224.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.162;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.15;SOR=0.770 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2238,237,0 1 165377552 . G A 1449.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;CNN_1D=-0.118;DP=103;ExcessHet=3.0103;FS=3.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=0.605;SOR=0.386 GT:AD:DP:GQ:PL 0/1:38,65:103:99:1457,0,785 1 165389129 . G A 1951.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;CNN_1D=-4.649;DP=165;ExcessHet=3.0103;FS=6.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.912;SOR=0.775 GT:AD:DP:GQ:PL 0/1:78,87:165:99:1959,0,1661 1 165533005 . C A 3711.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.129;CNN_1D=-0.194;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.70;ReadPosRankSum=0.258;SOR=1.089 GT:AD:DP:GQ:PL 1/1:4,135:139:99:3725,317,0 1 165652273 . A G 2635.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.141;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.03;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2649,282,0 1 167095163 . G C 1682.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;CNN_1D=-3.023;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=0.163;SOR=0.656 GT:AD:DP:GQ:PL 0/1:63,72:135:99:1690,0,1407 1 167096931 . A C 1787.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;CNN_1D=-3.812;DP=146;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-2.691;SOR=0.853 GT:AD:DP:GQ:PL 0/1:75,70:145:99:1795,0,1770 1 167522938 . G T 322.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.544;CNN_1D=3.027;DP=22;ExcessHet=3.0103;FS=4.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=1.334;SOR=0.169 GT:AD:DP:GQ:PL 0/1:8,14:22:99:330,0,219 1 167817639 . A G 1572.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.679;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.64;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1586,177,0 1 167825485 . T C 1328.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;CNN_1D=-4.270;DP=154;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=-0.738;SOR=0.829 GT:AD:DP:GQ:PL 0/1:89,65:154:99:1336,0,2087 1 167871297 . GA G 109.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;CNN_1D=-1.859;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.539;SOR=0.681 GT:AD:DP:GQ:PL 0/1:55,12:67:99:117,0,1088 1 167906239 . A C 2454.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.503;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.93;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2468,246,0 1 168013850 . T C 2091.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.667;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.64;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2105,218,0 1 168262522 . A AGT 363.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.322;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.26;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,12:12:34:377,34,0 1 168510366 . G A 931.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;CNN_1D=-7.114;DP=97;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=53.76;MQRankSum=-6.707;QD=9.60;ReadPosRankSum=-1.709;SOR=0.538 GT:AD:DP:GQ:PL 0/1:51,46:97:99:939,0,1165 1 168549422 . C T 675.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;CNN_1D=0.313;DP=89;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=1.574;QD=7.59;ReadPosRankSum=1.309;SOR=0.554 GT:AD:DP:GQ:PL 0/1:56,33:89:99:683,0,1323 1 168698173 . C T 1682.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;CNN_1D=-6.337;DP=167;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-1.663;SOR=0.979 GT:AD:DP:GQ:PL 0/1:90,77:167:99:1690,0,2168 1 169100596 . C T 2102.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;CNN_1D=-5.366;DP=179;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-0.798;SOR=0.753 GT:AD:DP:GQ:PL 0/1:88,91:179:99:2110,0,2067 1 169391154 . A G 2985.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.858;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.10;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2999,278,0 1 169438025 . A G 1259.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;CNN_1D=-3.589;DP=121;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-1.631;SOR=0.887 GT:AD:DP:GQ:PL 0/1:64,57:121:99:1267,0,1455 1 169455008 . G A 733.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;CNN_1D=0.847;DP=65;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.131;SOR=0.446 GT:AD:DP:GQ:PL 0/1:33,32:65:99:741,0,784 1 169510233 . G A 4661.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421;CNN_1D=-16.118;DP=541;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-0.882;QD=9.83;ReadPosRankSum=1.298;SOR=0.798 GT:AD:DP:GQ:PL 0/1:253,221:474:99:4669,0,5855 1 169510475 . G T 3806.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.802;CNN_1D=-16.021;DP=396;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-0.334;QD=9.64;ReadPosRankSum=-1.157;SOR=0.818 GT:AD:DP:GQ:PL 0/1:210,185:395:99:3814,0,4864 1 169519049 . T C 3214.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.022;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.70;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3228,336,0 1 169521849 . T C 930.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.246;CNN_1D=-0.404;DP=93;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.331;SOR=0.573 GT:AD:DP:GQ:PL 0/1:52,40:92:99:938,0,1173 1 169529826 . C A 949.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;CNN_1D=-0.092;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=0.043;SOR=0.756 GT:AD:DP:GQ:PL 0/1:41,40:81:99:957,0,985 1 169529973 . C T 1098.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;CNN_1D=-1.268;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=-0.577;SOR=0.714 GT:AD:DP:GQ:PL 0/1:46,49:95:99:1106,0,1010 1 169562904 . C T 948.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;CNN_1D=-0.881;DP=90;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=-0.971;SOR=0.546 GT:AD:DP:GQ:PL 0/1:48,42:90:99:956,0,1012 1 169566313 . C T 1473.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;CNN_1D=-2.120;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.969;SOR=0.639 GT:AD:DP:GQ:PL 0/1:54,67:121:99:1481,0,1135 1 169580885 . C T 1508.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;CNN_1D=-4.694;DP=155;ExcessHet=3.0103;FS=5.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=1.090;SOR=0.378 GT:AD:DP:GQ:PL 0/1:85,70:155:99:1516,0,2037 1 169677709 . A G 2170.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;CNN_1D=-3.287;DP=150;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=-0.810;SOR=0.634 GT:AD:DP:GQ:PL 0/1:64,86:150:99:2178,0,1517 1 169697076 . A G 1077.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;CNN_1D=0.440;DP=86;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=1.696;SOR=0.866 GT:AD:DP:GQ:PL 0/1:38,48:86:99:1085,0,835 1 169698789 . A G 1395.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;CNN_1D=-1.678;DP=119;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=2.071;SOR=0.793 GT:AD:DP:GQ:PL 0/1:59,60:119:99:1403,0,1331 1 169701060 . T G 613.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;CNN_1D=0.079;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.053;SOR=0.705 GT:AD:DP:GQ:PL 0/1:39,31:70:99:621,0,902 1 169701901 . T C 3242.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;CNN_1D=-3.423;DP=189;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.16;ReadPosRankSum=1.189;SOR=0.569 GT:AD:DP:GQ:PL 0/1:103,86:189:99:3250,0,5424 1 169701904 . T C 3292.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;CNN_1D=-4.338;DP=188;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.51;ReadPosRankSum=0.990;SOR=0.590 GT:AD:DP:GQ:PL 0/1:102,86:188:99:3300,0,5418 1 169768080 . C A 353.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;CNN_1D=0.059;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-0.242;SOR=0.738 GT:AD:DP:GQ:PL 0/1:37,19:56:99:361,0,880 1 169799880 . G T 1001.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;CNN_1D=0.739;DP=82;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=1.342;SOR=0.719 GT:AD:DP:GQ:PL 0/1:39,43:82:99:1009,0,947 1 169823718 . T C 1897.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;CNN_1D=-2.851;DP=148;ExcessHet=3.0103;FS=2.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=2.262;SOR=0.776 GT:AD:DP:GQ:PL 0/1:68,79:147:99:1905,0,1610 1 169823790 . C G 1123.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;CNN_1D=-3.908;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.815;SOR=0.707 GT:AD:DP:GQ:PL 0/1:75,51:126:99:1131,0,1820 1 169824068 . A G 594.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;CNN_1D=0.665;DP=63;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.056;SOR=0.886 GT:AD:DP:GQ:PL 0/1:37,26:63:99:602,0,945 1 169824104 . G A 445.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;CNN_1D=1.890;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.420;SOR=0.763 GT:AD:DP:GQ:PL 0/1:27,20:47:99:453,0,676 1 169828327 . G A 724.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;CNN_1D=1.227;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.546;SOR=0.641 GT:AD:DP:GQ:PL 0/1:34,33:67:99:732,0,817 1 170135669 . C T 941.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.194;CNN_1D=0.323;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=1.355;SOR=0.597 GT:AD:DP:GQ:PL 0/1:44,41:85:99:949,0,1143 1 170135760 . T C 2456.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;CNN_1D=-0.701;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.90;ReadPosRankSum=-0.373;SOR=0.706 GT:AD:DP:GQ:PL 0/1:67,63:130:99:2464,0,3450 1 170135765 . T C 2477.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;CNN_1D=-1.399;DP=133;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.63;ReadPosRankSum=-1.006;SOR=0.611 GT:AD:DP:GQ:PL 0/1:67,66:133:99:2485,0,3447 1 170501385 . A C 3413.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.158;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.75;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3427,365,0 1 170934394 . T C 778.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;CNN_1D=0.852;DP=68;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.753;SOR=0.761 GT:AD:DP:GQ:PL 0/1:33,34:67:99:786,0,810 1 170959029 . C T 772.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;CNN_1D=-3.625;DP=115;ExcessHet=3.0103;FS=13.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=0.833;SOR=1.643 GT:AD:DP:GQ:PL 0/1:77,38:115:99:780,0,1838 1 170959088 . C T 1012.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;CNN_1D=-4.601;DP=141;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-0.312;SOR=0.483 GT:AD:DP:GQ:PL 0/1:86,53:139:99:1020,0,2057 1 171250044 . C T 1511.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;CNN_1D=-4.348;DP=147;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-0.343;SOR=0.673 GT:AD:DP:GQ:PL 0/1:77,69:146:99:1519,0,1795 1 171252287 . A G 713.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;CNN_1D=2.536;DP=52;ExcessHet=3.0103;FS=5.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=1.393;SOR=0.401 GT:AD:DP:GQ:PL 0/1:25,27:52:99:721,0,571 1 171509327 . G A 2883.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.196;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.03;SOR=1.251 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2897,288,0 1 171511039 . C G 3943.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.071;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.43;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3957,401,0 1 171514731 . C G 2256.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.335;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.35;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2270,266,0 1 171526570 . G A 7441.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.666;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.29;SOR=0.780 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7455,789,0 1 171526910 . G A 1776.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;CNN_1D=-5.372;DP=168;ExcessHet=3.0103;FS=1.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=0.114;SOR=0.531 GT:AD:DP:GQ:PL 0/1:86,82:168:99:1784,0,1851 1 171556165 . G C 3492.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.687;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.50;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3506,381,0 1 171605539 . A G 3231.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.844;CNN_1D=-9.313;DP=264;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-0.303;SOR=0.613 GT:AD:DP:GQ:PL 0/1:118,145:263:99:3239,0,2746 1 171679958 . G A 141.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;CNN_1D=2.296;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.152;SOR=0.735 GT:AD:DP:GQ:PL 0/1:11,6:17:99:149,0,290 1 171751236 . T C 1166.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;CNN_1D=-1.253;DP=98;ExcessHet=3.0103;FS=0.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=1.002;SOR=0.856 GT:AD:DP:GQ:PL 0/1:48,50:98:99:1174,0,1049 1 171753039 . A G 1781.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;CNN_1D=-5.357;DP=178;ExcessHet=3.0103;FS=2.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=0.717;SOR=0.552 GT:AD:DP:GQ:PL 0/1:95,83:178:99:1789,0,2237 1 171755170 . G A 1473.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;CNN_1D=-2.304;DP=123;ExcessHet=3.0103;FS=6.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=0.777;SOR=0.854 GT:AD:DP:GQ:PL 0/1:56,67:123:99:1481,0,1168 1 171810960 . A G 2236.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.943;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.63;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2250,219,0 1 172356437 . A G 2522.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.177;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.66;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2536,264,0 1 172410967 . G A 2182.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;CNN_1D=-4.477;DP=168;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.658;SOR=0.928 GT:AD:DP:GQ:PL 0/1:77,91:168:99:2190,0,1710 1 172411496 . A G 4731.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.280;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.57;QD=31.13;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4745,456,0 1 172411768 . T C 871.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;CNN_1D=1.296;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-0.100;SOR=0.686 GT:AD:DP:GQ:PL 0/1:35,32:67:99:879,0,849 1 172422209 . C T 1416.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;CNN_1D=-4.373;DP=147;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=1.669;SOR=0.784 GT:AD:DP:GQ:PL 0/1:80,67:147:99:1424,0,1673 1 172437592 . G A 1234.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;CNN_1D=3.747;DP=44;ExcessHet=3.0103;FS=3.647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.05;ReadPosRankSum=0.551;SOR=0.753 GT:AD:DP:GQ:PL 1/1:1,43:44:87:1248,87,0 1 172501643 . T C 3034.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.019;CNN_1D=1.526;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.36;ReadPosRankSum=-1.691;SOR=1.168 GT:AD:DP:GQ:PL 1/1:2,105:107:99:3048,272,0 1 172502340 . T C 2246.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.693;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.80;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2260,234,0 1 172502479 . T C 2644.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.078;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.24;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2658,246,0 1 172547465 . A G 2270.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.363;CNN_1D=3.522;DP=84;ExcessHet=3.0103;FS=6.285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.02;ReadPosRankSum=0.969;SOR=0.278 GT:AD:DP:GQ:PL 1/1:2,82:84:99:2284,178,0 1 173474429 . T C 1208.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;CNN_1D=-0.794;DP=102;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=0.074;SOR=0.540 GT:AD:DP:GQ:PL 0/1:46,56:102:99:1216,0,973 1 173490547 . GA G 34.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;CNN_1D=-1.806;DP=49;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-1.248;SOR=1.022 GT:AD:DP:GQ:PL 0/1:39,7:46:42:42,0,876 1 173516871 . G C 1074.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;CNN_1D=-0.719;DP=99;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=1.177;SOR=0.545 GT:AD:DP:GQ:PL 0/1:52,47:99:99:1082,0,1285 1 173516903 . A G 898.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;CNN_1D=0.309;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=1.355;SOR=0.635 GT:AD:DP:GQ:PL 0/1:46,40:86:99:906,0,1105 1 173794400 . C T 938.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;CNN_1D=-1.243;DP=96;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.316;SOR=0.378 GT:AD:DP:GQ:PL 0/1:50,46:96:99:946,0,1156 1 173878832 . T C 2358.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;CNN_1D=-7.917;DP=214;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.850;SOR=0.586 GT:AD:DP:GQ:PL 0/1:115,99:214:99:2366,0,2731 1 173878862 . T C 2525.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;CNN_1D=-7.775;DP=217;ExcessHet=3.0103;FS=3.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.248;SOR=0.492 GT:AD:DP:GQ:PL 0/1:112,105:217:99:2533,0,2587 1 174959108 . G A 1170.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;CNN_1D=-2.653;DP=124;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.310;SOR=0.687 GT:AD:DP:GQ:PL 0/1:67,56:123:99:1178,0,1495 1 175049379 . G A 1502.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;CNN_1D=-2.313;DP=127;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.697;SOR=0.938 GT:AD:DP:GQ:PL 0/1:64,63:127:99:1510,0,1537 1 175087884 . C T 3948.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;CNN_1D=-9.977;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.681;QD=15.73;ReadPosRankSum=1.329;SOR=0.725 GT:AD:DP:GQ:PL 0/1:146,105:251:99:3956,0,6838 1 175087885 . A G 3948.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.927;CNN_1D=-9.863;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.681;QD=15.73;ReadPosRankSum=1.319;SOR=0.698 GT:AD:DP:GQ:PL 0/1:146,105:251:99:3956,0,6838 1 175092674 . C T 6511.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.859;CNN_1D=-4.093;DP=232;ExcessHet=3.0103;FS=3.028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.19;ReadPosRankSum=0.112;SOR=0.107 GT:AD:DP:GQ:PL 1/1:2,229:231:99:6525,614,0 1 175113578 . T C 4521.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.592;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.40;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4535,494,0 1 175299301 . T C 3249.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.468;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.01;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3263,336,0 1 175324651 . A G 2796.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.569;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.15;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2810,309,0 1 175324711 . G A 1612.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.222;CNN_1D=-4.326;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-0.689;SOR=0.686 GT:AD:DP:GQ:PL 0/1:71,75:146:99:1620,0,1793 1 175348723 . C T 968.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;CNN_1D=-2.726;DP=108;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-1.962;SOR=0.600 GT:AD:DP:GQ:PL 0/1:59,48:107:99:976,0,1358 1 175355391 . A G 3821.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.256;CNN_1D=1.228;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.10;ReadPosRankSum=0.074;SOR=0.606 GT:AD:DP:GQ:PL 1/1:3,133:136:99:3835,320,0 1 175375635 . G A 1602.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;CNN_1D=-3.124;DP=139;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-0.992;SOR=0.686 GT:AD:DP:GQ:PL 0/1:70,69:139:99:1610,0,1657 1 175375683 . T C 1679.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;CNN_1D=-3.652;DP=143;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-0.141;SOR=0.752 GT:AD:DP:GQ:PL 0/1:72,71:143:99:1687,0,1680 1 175375802 . T C 1479.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;CNN_1D=-3.562;DP=145;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.594;SOR=0.508 GT:AD:DP:GQ:PL 0/1:76,68:144:99:1487,0,1703 1 176050430 . GA G 87.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;CNN_1D=-2.009;DP=37;ExcessHet=3.0103;FS=4.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.429;SOR=1.863 GT:AD:DP:GQ:PL 0/1:22,8:30:95:95,0,370 1 176118219 . G A 446.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;CNN_1D=0.544;DP=49;ExcessHet=3.0103;FS=4.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-1.771;SOR=1.414 GT:AD:DP:GQ:PL 0/1:29,20:49:99:454,0,647 1 176659463 . C T 1737.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;CNN_1D=-3.942;DP=162;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=1.140;SOR=0.829 GT:AD:DP:GQ:PL 0/1:86,76:162:99:1745,0,2079 1 176671881 . T TTGTGTGTG 287.84 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.141;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.05;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,8:8:16:302,16,0 1 176809368 . C T 2004.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;CNN_1D=-6.027;DP=174;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=-1.612;SOR=0.766 GT:AD:DP:GQ:PL 0/1:79,95:174:99:2012,0,1581 1 176857347 . A G 3162.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.478;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.75;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3176,330,0 1 176863836 . G C 4093.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.263;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.03;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4107,423,0 1 176863867 . T C 3833.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.005;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.18;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3847,408,0 1 176992553 . A G 1215.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;CNN_1D=-1.233;DP=101;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.917;SOR=0.625 GT:AD:DP:GQ:PL 0/1:49,51:100:99:1223,0,1155 1 176992676 . C T 1492.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;CNN_1D=-2.742;DP=123;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=-0.709;SOR=0.786 GT:AD:DP:GQ:PL 0/1:59,64:123:99:1500,0,1408 1 177247900 . G A 806.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;CNN_1D=0.554;DP=78;ExcessHet=3.0103;FS=4.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-2.711;SOR=0.359 GT:AD:DP:GQ:PL 0/1:45,33:78:99:814,0,1091 1 177901619 . G A 1182.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;CNN_1D=0.410;DP=90;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-0.004;SOR=0.469 GT:AD:DP:GQ:PL 0/1:39,51:90:99:1190,0,897 1 177901655 . G A 2534.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;CNN_1D=-0.111;DP=119;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.30;ReadPosRankSum=-1.048;SOR=0.604 GT:AD:DP:GQ:PL 0/1:53,66:119:99:2542,0,2377 1 177901658 . C T 2484.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800;CNN_1D=0.620;DP=119;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.88;ReadPosRankSum=-0.371;SOR=0.621 GT:AD:DP:GQ:PL 0/1:55,64:119:99:2492,0,2426 1 177901713 . T C 1394.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;CNN_1D=-1.927;DP=111;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-0.782;SOR=0.582 GT:AD:DP:GQ:PL 0/1:54,57:111:99:1402,0,1375 1 177902387 . C A 1292.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;CNN_1D=-5.510;DP=159;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=1.097;SOR=0.775 GT:AD:DP:GQ:PL 0/1:98,61:159:99:1300,0,2196 1 177902725 . C T 856.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;CNN_1D=-2.494;DP=120;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=2.222;SOR=0.580 GT:AD:DP:GQ:PL 0/1:81,39:120:99:864,0,1993 1 177902753 . G C 762.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.501;CNN_1D=-1.872;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=0.476;SOR=0.785 GT:AD:DP:GQ:PL 0/1:65,32:97:99:770,0,1637 1 177905469 . C A 1323.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;CNN_1D=-1.973;DP=126;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=1.470;SOR=0.766 GT:AD:DP:GQ:PL 0/1:65,61:126:99:1331,0,1510 1 177906657 . G A 851.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;CNN_1D=2.807;DP=57;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.541;SOR=0.516 GT:AD:DP:GQ:PL 0/1:22,35:57:99:859,0,493 1 177929940 . G A 1058.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;CNN_1D=-3.005;DP=113;ExcessHet=3.0103;FS=4.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-2.202;SOR=1.124 GT:AD:DP:GQ:PL 0/1:65,48:113:99:1066,0,1566 1 177929987 . T C 1586.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;CNN_1D=-5.438;DP=175;ExcessHet=3.0103;FS=4.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=1.171;SOR=0.794 GT:AD:DP:GQ:PL 0/1:98,77:175:99:1594,0,2140 1 178489978 . T G 2029.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;CNN_1D=-7.340;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.930;SOR=0.659 GT:AD:DP:GQ:PL 0/1:108,93:201:99:2037,0,2470 1 179310262 . C T 1169.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;CNN_1D=-1.644;DP=118;ExcessHet=3.0103;FS=3.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=1.331;SOR=0.489 GT:AD:DP:GQ:PL 0/1:66,51:117:99:1177,0,1624 1 179310439 . C T 1057.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;CNN_1D=-0.020;DP=72;ExcessHet=3.0103;FS=9.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-1.424;SOR=1.795 GT:AD:DP:GQ:PL 0/1:32,40:72:99:1065,0,1197 1 179310449 . A G 683.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;CNN_1D=1.570;DP=66;ExcessHet=3.0103;FS=9.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=1.122;SOR=0.148 GT:AD:DP:GQ:PL 0/1:36,30:66:99:691,0,1422 1 179347832 . T C 530.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;CNN_1D=0.576;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=-0.174;SOR=0.690 GT:AD:DP:GQ:PL 0/1:39,26:65:99:538,0,841 1 179503015 . A G 663.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;CNN_1D=0.185;DP=65;ExcessHet=3.0103;FS=3.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-1.152;SOR=0.865 GT:AD:DP:GQ:PL 0/1:35,30:65:99:671,0,753 1 179504025 . AAAG A 1124.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;CNN_1D=0.972;DP=73;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.30;ReadPosRankSum=2.041;SOR=0.557 GT:AD:DP:GQ:PL 0/1:39,30:69:99:1132,0,2670 1 179504043 . C G 1136.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.365;CNN_1D=0.748;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=0.733;SOR=0.711 GT:AD:DP:GQ:PL 0/1:39,31:70:99:1144,0,2738 1 179520506 . G A 2031.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;CNN_1D=-2.691;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=1.237;SOR=0.689 GT:AD:DP:GQ:PL 0/1:64,82:146:99:2039,0,1353 1 179544898 . T C 2877.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.475;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.49;SOR=0.930 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2891,303,0 1 179562740 . G C 2362.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;CNN_1D=-8.434;DP=237;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.801;SOR=0.604 GT:AD:DP:GQ:PL 0/1:126,110:236:99:2370,0,3062 1 179604864 . C T 5561.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.383;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.94;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5575,597,0 1 179852074 . T C 1582.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.239;CNN_1D=3.805;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.28;ReadPosRankSum=-0.021;SOR=0.384 GT:AD:DP:GQ:PL 1/1:2,56:58:98:1596,98,0 1 179858444 . G A 1845.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.858;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.13;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1859,203,0 1 179876988 . C G 916.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.732;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=24.11;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,38:38:99:930,113,0 1 179887125 . G A 4386.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.368;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.04;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4400,438,0 1 179989742 . G C 3932.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.029;CNN_1D=2.499;DP=126;ExcessHet=3.0103;FS=3.080;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.21;ReadPosRankSum=1.719;SOR=0.299 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3946,344,0 1 180145088 . A G 2395.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.148;CNN_1D=1.744;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=-1.520;SOR=0.807 GT:AD:DP:GQ:PL 1/1:4,91:95:99:2409,186,0 1 180235728 . C T 535.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;CNN_1D=-0.565;DP=65;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-0.102;SOR=0.926 GT:AD:DP:GQ:PL 0/1:41,24:65:99:543,0,1007 1 180243524 . A G 2825.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.194;CNN_1D=-10.339;DP=265;ExcessHet=3.0103;FS=4.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.381;SOR=0.515 GT:AD:DP:GQ:PL 0/1:142,121:263:99:2833,0,3231 1 180793944 . G T 963.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;CNN_1D=-2.332;DP=104;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=0.052;SOR=0.789 GT:AD:DP:GQ:PL 0/1:55,49:104:99:971,0,1296 1 180885430 . T C 5245.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.795;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.30;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5259,537,0 1 180897569 . C T 652.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;CNN_1D=1.924;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=0.402;SOR=0.600 GT:AD:DP:GQ:PL 0/1:22,27:49:99:660,0,497 1 180905694 . C T 2928.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.724;CNN_1D=1.669;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=2.297;SOR=0.846 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2942,283,0 1 180913597 . A G 1988.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.453;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.24;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2002,204,0 1 180953853 . A G 1164.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.605;CNN_1D=-1.762;DP=109;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-1.372;SOR=0.522 GT:AD:DP:GQ:PL 0/1:52,57:109:99:1172,0,1197 1 181018236 . A G 1397.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;CNN_1D=-2.561;DP=110;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-0.851;QD=12.71;ReadPosRankSum=-0.195;SOR=1.022 GT:AD:DP:GQ:PL 0/1:50,60:110:99:1405,0,1149 1 181024404 . G A 3475.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.797;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.58;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3489,377,0 1 181058313 . G A 358.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;CNN_1D=2.385;DP=30;ExcessHet=3.0103;FS=3.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.645;SOR=1.410 GT:AD:DP:GQ:PL 0/1:16,14:30:99:366,0,388 1 181058618 . C G 489.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;CNN_1D=0.815;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=0.018;SOR=0.586 GT:AD:DP:GQ:PL 0/1:29,23:52:99:497,0,741 1 181058643 . A G 1652.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.177;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.60;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1666,141,0 1 181752923 . AAGCTT A 901.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;CNN_1D=0.371;DP=77;ExcessHet=3.0103;FS=2.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=0.846;SOR=0.910 GT:AD:DP:GQ:PL 0/1:47,25:72:99:909,0,3068 1 181759657 . G A 1789.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;CNN_1D=-2.875;DP=134;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=-0.344;SOR=0.772 GT:AD:DP:GQ:PL 0/1:56,77:133:99:1797,0,1209 1 182026813 . G C 2065.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.809;CNN_1D=-3.447;DP=150;ExcessHet=3.0103;FS=8.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=0.882;SOR=1.241 GT:AD:DP:GQ:PL 0/1:74,76:150:99:2073,0,1811 1 182027022 . C T 1516.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;CNN_1D=-4.996;DP=142;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=1.312;SOR=0.605 GT:AD:DP:GQ:PL 0/1:75,67:142:99:1524,0,1831 1 182356399 . A G 1123.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;CNN_1D=-2.450;DP=113;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-0.980;SOR=0.741 GT:AD:DP:GQ:PL 0/1:61,52:113:99:1131,0,1405 1 182369078 . G A 2277.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;CNN_1D=-4.476;DP=176;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=2.233;SOR=0.743 GT:AD:DP:GQ:PL 0/1:79,96:175:99:2285,0,1729 1 182369233 . A G 2370.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.877;CNN_1D=-4.563;DP=169;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=1.842;SOR=0.611 GT:AD:DP:GQ:PL 0/1:78,91:169:99:2378,0,1723 1 182443014 . G C 2449.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;CNN_1D=-7.014;DP=216;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=-0.140;SOR=0.571 GT:AD:DP:GQ:PL 0/1:113,103:216:99:2457,0,2703 1 182443462 . T C 3859.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.508;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.37;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3873,369,0 1 182551337 . A C 3491.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.697;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.38;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3505,369,0 1 182554557 . C T 1709.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;CNN_1D=-5.100;DP=165;ExcessHet=3.0103;FS=4.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=1.917;SOR=1.034 GT:AD:DP:GQ:PL 0/1:90,75:165:99:1717,0,2056 1 182569626 . T C 3268.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.302;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.93;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3282,351,0 1 182835662 . C T 479.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;CNN_1D=0.461;DP=66;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=0.458;SOR=0.595 GT:AD:DP:GQ:PL 0/1:43,23:66:99:487,0,1018 1 182850727 . T C 3243.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.005;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.45;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3257,342,0 1 182993025 . C T 1611.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;CNN_1D=-2.767;DP=129;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-1.011;SOR=0.481 GT:AD:DP:GQ:PL 0/1:62,67:129:99:1619,0,1452 1 183072590 . T C 2299.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;CNN_1D=-6.590;DP=197;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-0.060;SOR=0.861 GT:AD:DP:GQ:PL 0/1:96,100:196:99:2307,0,2073 1 183085755 . A G 1103.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.642;CNN_1D=-0.191;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=1.151;SOR=0.675 GT:AD:DP:GQ:PL 0/1:55,45:100:99:1111,0,1247 1 183086757 . A C 2136.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;CNN_1D=-6.402;DP=194;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-1.425;SOR=0.615 GT:AD:DP:GQ:PL 0/1:97,97:194:99:2144,0,2224 1 183093875 . T C 1598.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;CNN_1D=-5.005;DP=164;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=0.284;SOR=0.801 GT:AD:DP:GQ:PL 0/1:88,76:164:99:1606,0,1971 1 183094547 . T C 1003.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;CNN_1D=-0.298;DP=87;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=0.124;SOR=0.652 GT:AD:DP:GQ:PL 0/1:39,48:87:99:1011,0,795 1 183105534 . T C 401.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;CNN_1D=0.952;DP=52;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=-0.162;SOR=1.055 GT:AD:DP:GQ:PL 0/1:33,19:52:99:409,0,903 1 183105705 . G A 940.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437;CNN_1D=-1.775;DP=102;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=0.651;SOR=0.508 GT:AD:DP:GQ:PL 0/1:55,47:102:99:948,0,1270 1 183155482 . C A 773.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;CNN_1D=2.241;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=0.181;SOR=0.542 GT:AD:DP:GQ:PL 0/1:16,33:49:99:781,0,304 1 183201898 . G A 661.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;CNN_1D=-0.508;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-1.066;SOR=0.693 GT:AD:DP:GQ:PL 0/1:48,32:80:99:669,0,1075 1 183486859 . G A 4830.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.502;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.08;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4844,515,0 1 183542387 . T C 3154.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.270;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.67;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3168,330,0 1 183616926 . T C 767.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;CNN_1D=-0.805;DP=92;ExcessHet=3.0103;FS=2.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=1.064;SOR=0.427 GT:AD:DP:GQ:PL 0/1:56,36:92:99:775,0,1375 1 183617105 . A G 1627.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;CNN_1D=-3.077;DP=130;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.720;SOR=0.909 GT:AD:DP:GQ:PL 0/1:67,63:130:99:1635,0,1768 1 183852914 . G C 848.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;CNN_1D=-0.577;DP=85;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.667;SOR=0.511 GT:AD:DP:GQ:PL 0/1:46,39:85:99:856,0,1087 1 184006380 . C T 1515.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;CNN_1D=-1.798;DP=114;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=0.962;SOR=0.951 GT:AD:DP:GQ:PL 0/1:49,65:114:99:1523,0,1027 1 184692999 . T TA 101.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;CNN_1D=-3.509;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.681;SOR=0.527 GT:AD:DP:GQ:PL 0/1:11,10:21:99:109,0,126 1 184801065 . T C 1024.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;CNN_1D=-0.383;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=1.807;SOR=0.673 GT:AD:DP:GQ:PL 0/1:49,46:95:99:1032,0,1111 1 185135745 . A G 1645.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.893;CNN_1D=3.877;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.88;ReadPosRankSum=0.999;SOR=0.399 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1659,140,0 1 185143721 . A G 893.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.144;CNN_1D=0.388;DP=80;ExcessHet=3.0103;FS=5.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-1.820;SOR=0.942 GT:AD:DP:GQ:PL 0/1:46,34:80:99:901,0,1084 1 185171869 . A G 593.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;CNN_1D=-0.012;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.973;SOR=0.593 GT:AD:DP:GQ:PL 0/1:36,30:66:99:601,0,835 1 185240474 . A G 1167.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.896;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.46;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1181,123,0 1 185950199 . G A 957.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;CNN_1D=-1.185;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=0.589;SOR=0.701 GT:AD:DP:GQ:PL 0/1:54,43:97:99:965,0,1150 1 185958737 . A G 1484.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;CNN_1D=-3.822;DP=136;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=0.727;SOR=0.488 GT:AD:DP:GQ:PL 0/1:68,68:136:99:1492,0,1410 1 186024643 . G A 2275.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;CNN_1D=-7.512;DP=217;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=2.136;SOR=0.626 GT:AD:DP:GQ:PL 0/1:109,107:216:99:2283,0,2485 1 186026474 . T C 1437.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;CNN_1D=-3.273;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.375;SOR=0.635 GT:AD:DP:GQ:PL 0/1:65,65:130:99:1445,0,1409 1 186031041 . C T 2554.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.343;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.33;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2568,289,0 1 186050417 . A G 1519.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;CNN_1D=-4.596;DP=155;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.244;SOR=0.727 GT:AD:DP:GQ:PL 0/1:83,72:155:99:1527,0,1867 1 186055371 . A G 2125.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.041;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.72;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2139,222,0 1 186064616 . T C 937.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;CNN_1D=-0.685;DP=91;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-1.599;SOR=0.546 GT:AD:DP:GQ:PL 0/1:46,44:90:99:945,0,1057 1 186092076 . A C 1547.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.223;CNN_1D=2.939;DP=53;ExcessHet=3.0103;FS=2.653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.19;ReadPosRankSum=-0.163;SOR=1.702 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1561,110,0 1 186092103 . C T 920.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;CNN_1D=-0.052;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-0.690;SOR=0.631 GT:AD:DP:GQ:PL 0/1:44,40:84:99:928,0,985 1 186099180 . C T 871.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;CNN_1D=-1.615;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-1.437;SOR=0.705 GT:AD:DP:GQ:PL 0/1:59,43:102:99:879,0,1307 1 186101539 . A G 2854.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.340;CNN_1D=2.147;DP=110;ExcessHet=3.0103;FS=3.027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=0.929;SOR=0.129 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2868,252,0 1 186113727 . G A 1742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;CNN_1D=-4.491;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-1.499;SOR=0.675 GT:AD:DP:GQ:PL 0/1:83,80:163:99:1750,0,2010 1 186134246 . A T 1247.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;CNN_1D=-1.326;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=1.419;SOR=0.773 GT:AD:DP:GQ:PL 0/1:48,55:103:99:1255,0,1165 1 186158725 . C G 1730.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.599;CNN_1D=-6.250;DP=179;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=1.556;SOR=0.940 GT:AD:DP:GQ:PL 0/1:105,73:178:99:1738,0,2477 1 186273994 . C T 554.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;CNN_1D=0.251;DP=58;ExcessHet=3.0103;FS=3.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=0.662;SOR=0.573 GT:AD:DP:GQ:PL 0/1:30,28:58:99:562,0,654 1 186275760 . G A 1350.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;CNN_1D=-2.257;DP=129;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=0.721;SOR=0.891 GT:AD:DP:GQ:PL 0/1:71,55:126:99:1358,0,1663 1 186276661 . A G 2700.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;CNN_1D=-12.630;DP=331;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=2.085;QD=8.26;ReadPosRankSum=1.411;SOR=0.744 GT:AD:DP:GQ:PL 0/1:191,136:327:99:2708,0,3802 1 186277088 . G C 6685.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.641;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.37;QD=28.33;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,236:236:99:6699,708,0 1 186277989 . A G 1592.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;CNN_1D=-4.215;DP=150;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.844;SOR=0.974 GT:AD:DP:GQ:PL 0/1:76,72:148:99:1600,0,1843 1 186316488 . C T 1942.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;CNN_1D=-5.705;DP=176;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=2.080;SOR=0.853 GT:AD:DP:GQ:PL 0/1:85,91:176:99:1950,0,1753 1 186363119 . C G 63.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;CNN_1D=1.041;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.306;SOR=0.458 GT:AD:DP:GQ:PL 0/1:20,5:25:71:71,0,546 1 186418600 . C T 199.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;CNN_1D=1.610;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-2.397;SOR=0.766 GT:AD:DP:GQ:PL 0/1:15,11:26:99:207,0,336 1 186946912 . G A 2368.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.866;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.86;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2382,255,0 1 193051685 . G A 744.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;CNN_1D=0.648;DP=74;ExcessHet=3.0103;FS=3.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=1.486;SOR=1.085 GT:AD:DP:GQ:PL 0/1:40,34:74:99:752,0,810 1 193074651 . T A 827.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;CNN_1D=1.957;DP=61;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=0.251;SOR=0.467 GT:AD:DP:GQ:PL 0/1:24,37:61:99:835,0,481 1 196227526 . A G 3444.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.848;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.94;SOR=1.258 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3458,354,0 1 196874356 . G T 1687.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.802;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.59;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1701,177,0 1 196876458 . A G 2535.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.201;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.86;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2549,272,0 1 196887457 . G A 277.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;CNN_1D=1.281;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.028;SOR=0.807 GT:AD:DP:GQ:PL 0/1:26,14:40:99:285,0,614 1 197009798 . A G 1704.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.825;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.88;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1718,177,0 1 197030201 . T C 414.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.402;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.60;SOR=1.911 GT:AD:DP:GQ:PL 1/1:0,15:15:45:428,45,0 1 197031021 . C T 1962.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.270;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.88;SOR=0.720 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1976,218,0 1 197055925 . T C 1038.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.302;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.83;SOR=1.547 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1052,108,0 1 197070815 . T C 3440.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.438;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.08;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3454,312,0 1 197070901 . A G 3939.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.128;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.77;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3953,383,0 1 197091537 . A T 2371.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.323;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.79;SOR=1.150 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2385,231,0 1 197094030 . C T 1460.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.589;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.20;SOR=1.802 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1474,150,0 1 197112533 . G A 3498.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.420;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.68;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3512,342,0 1 197390368 . A G 5310.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.086;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.66;SOR=0.750 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5324,536,0 1 197480927 . C T 849.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;CNN_1D=-1.531;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=2.193;SOR=0.631 GT:AD:DP:GQ:PL 0/1:55,42:97:99:857,0,1218 1 197576307 . A AT 1882.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.742;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=22.97;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1896,159,0 1 197704717 . C T 925.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;CNN_1D=0.791;DP=77;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-2.135;SOR=0.817 GT:AD:DP:GQ:PL 0/1:36,41:77:99:933,0,777 1 197872019 . G T 1680.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.607;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.11;SOR=1.697 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1694,162,0 1 198509732 . G A 2130.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980;CNN_1D=-4.079;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.208;SOR=0.672 GT:AD:DP:GQ:PL 0/1:62,96:158:99:2138,0,1326 1 198704294 . C T 450.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;CNN_1D=1.961;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=1.033;SOR=0.784 GT:AD:DP:GQ:PL 0/1:20,21:41:99:458,0,388 1 200618238 . T C 2099.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.317;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.62;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2113,227,0 1 200776641 . C T 701.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;CNN_1D=0.880;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.196;SOR=0.752 GT:AD:DP:GQ:PL 0/1:38,33:71:99:709,0,820 1 200867552 . C T 1667.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;CNN_1D=-4.564;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-1.527;SOR=0.647 GT:AD:DP:GQ:PL 0/1:79,73:152:99:1675,0,1689 1 200880869 . A C 1070.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;CNN_1D=-3.636;DP=110;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-0.610;QD=9.73;ReadPosRankSum=-0.282;SOR=0.787 GT:AD:DP:GQ:PL 0/1:60,50:110:99:1078,0,1500 1 200880978 . C T 2775.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.776;CNN_1D=-1.323;DP=89;ExcessHet=3.0103;FS=3.159;MLEAC=2;MLEAF=1.00;MQ=43.61;MQRankSum=-1.589;QD=31.18;ReadPosRankSum=-0.818;SOR=0.368 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2789,227,0 1 200959105 . G A 444.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;CNN_1D=0.025;DP=54;ExcessHet=3.0103;FS=2.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-1.430;SOR=0.949 GT:AD:DP:GQ:PL 0/1:33,21:54:99:452,0,741 1 201020105 . A G 1289.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;CNN_1D=-1.312;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-0.574;SOR=0.765 GT:AD:DP:GQ:PL 0/1:50,55:105:99:1297,0,1139 1 201038687 . A G 1035.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;CNN_1D=-0.596;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=0.055;SOR=0.691 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1043,0,903 1 201044748 . A G 2512.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.477;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.23;SOR=1.080 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2526,267,0 1 201047075 . A G 1442.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;CNN_1D=-1.683;DP=122;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=-0.182;SOR=0.499 GT:AD:DP:GQ:PL 0/1:57,65:122:99:1450,0,1292 1 201047111 . A G 1479.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;CNN_1D=-3.714;DP=142;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=0.495;SOR=0.827 GT:AD:DP:GQ:PL 0/1:76,66:142:99:1487,0,1700 1 201052310 . A T 2071.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;CNN_1D=-2.085;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.44;ReadPosRankSum=-0.757;SOR=0.691 GT:AD:DP:GQ:PL 0/1:72,54:126:99:2079,0,3495 1 201052312 . A C 2071.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;CNN_1D=-1.866;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.744;SOR=0.748 GT:AD:DP:GQ:PL 0/1:76,56:132:99:2079,0,3495 1 201060865 . G A 4275.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.275;CNN_1D=0.222;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.94;ReadPosRankSum=-0.362;SOR=0.419 GT:AD:DP:GQ:PL 1/1:3,150:153:99:4289,369,0 1 201083930 . A G 1026.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.415;CNN_1D=-2.594;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=-1.483;SOR=0.693 GT:AD:DP:GQ:PL 0/1:68,42:110:99:1034,0,1636 1 201112981 . A G 1775.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;CNN_1D=-4.322;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=-1.995;SOR=0.696 GT:AD:DP:GQ:PL 0/1:66,81:147:99:1783,0,1382 1 201123019 . C T 1538.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;CNN_1D=-4.935;DP=152;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.748;SOR=0.604 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1546,0,1884 1 201166383 . G A 3307.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.462;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.46;SOR=0.810 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3321,375,0 1 201166435 . T C 2416.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.705;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.84;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2430,269,0 1 201168499 . G A 903.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;CNN_1D=-2.115;DP=109;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.626;SOR=0.858 GT:AD:DP:GQ:PL 0/1:67,42:109:99:911,0,1566 1 201174204 . C T 1477.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;CNN_1D=-1.056;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=0.772;SOR=0.753 GT:AD:DP:GQ:PL 0/1:50,60:110:99:1485,0,1191 1 201175227 . C A 1224.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;CNN_1D=-0.343;DP=96;ExcessHet=3.0103;FS=3.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=-0.055;SOR=0.374 GT:AD:DP:GQ:PL 0/1:45,51:96:99:1232,0,1043 1 201175274 . A G 3692.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.224;CNN_1D=0.410;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.75;ReadPosRankSum=-0.482;SOR=0.687 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3706,326,0 1 201175715 . G T 2489.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;CNN_1D=-8.087;DP=218;ExcessHet=3.0103;FS=3.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-1.429;SOR=0.608 GT:AD:DP:GQ:PL 0/1:109,109:218:99:2497,0,2416 1 201176018 . A G 2330.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;CNN_1D=-6.527;DP=203;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=0.998;SOR=0.640 GT:AD:DP:GQ:PL 0/1:103,100:203:99:2338,0,2364 1 201178926 . G GGCAGGTTATAGGAAGGATTTGGGGGCTCCTAAGGGAATGGGTTCAGGGAGTAAGGCAAGTTTTAGGGATGGTTTAGGGGGTTCTGGAGAAATGGGGTCAGTGAATGAA 2141.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.965;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.73;QD=36.28;SOR=0.223 GT:AD:DP:GQ:PL 1/1:3,0:3:63:2155,63,0 1 201179050 . A G 2218.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;CNN_1D=-16.118;DP=388;ExcessHet=3.0103;FS=12.685;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=-14.012;QD=6.06;ReadPosRankSum=5.084;SOR=1.039 GT:AD:DP:GQ:PL 0/1:290,76:366:99:2226,0,14432 1 201179068 . G A 2079.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;CNN_1D=-16.118;DP=393;ExcessHet=3.0103;FS=17.472;MLEAC=1;MLEAF=0.500;MQ=53.72;MQRankSum=-11.824;QD=5.61;ReadPosRankSum=1.222;SOR=1.240 GT:AD:DP:GQ:PL 0/1:299,72:371:99:2087,0,15387 1 201179082 . G A 1492.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;CNN_1D=-16.118;DP=402;ExcessHet=3.0103;FS=14.758;MLEAC=1;MLEAF=0.500;MQ=52.27;MQRankSum=-8.729;QD=3.93;ReadPosRankSum=-0.248;SOR=1.401 GT:AD:DP:GQ:PL 0/1:321,59:380:99:1500,0,15424 1 201179205 . C T 61.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;CNN_1D=-7.223;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.46;MQRankSum=1.283;QD=0.58;ReadPosRankSum=-0.284;SOR=0.547 GT:AD:DP:GQ:PL 0/1:97,9:106:69:69,0,4601 1 201179274 . T G 50.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;CNN_1D=-1.415;DP=50;ExcessHet=3.0103;FS=10.692;MLEAC=1;MLEAF=0.500;MQ=41.92;MQRankSum=4.537;QD=1.01;ReadPosRankSum=-3.538;SOR=0.092 GT:AD:DP:GQ:PL 0/1:35,15:50:58:58,0,1518 1 201179599 . G C 433.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;CNN_1D=-1.317;DP=31;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=37.65;MQRankSum=-0.488;QD=13.99;ReadPosRankSum=0.278;SOR=0.425 GT:AD:DP:GQ:PL 0/1:17,14:31:99:441,0,563 1 201180340 . A G 3416.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;CNN_1D=-11.784;DP=301;ExcessHet=3.0103;FS=5.250;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=0.594;QD=11.43;ReadPosRankSum=-1.283;SOR=0.867 GT:AD:DP:GQ:PL 0/1:148,151:299:99:3424,0,3240 1 201181223 . A G 5704.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.165;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.34;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5718,546,0 1 201187764 . T C 4386.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.984;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.07;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4400,485,0 1 201190732 . G A 1232.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;CNN_1D=-2.833;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-0.509;SOR=0.700 GT:AD:DP:GQ:PL 0/1:67,57:124:99:1240,0,1547 1 201195119 . C T 1651.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;CNN_1D=-5.689;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-1.066;SOR=0.707 GT:AD:DP:GQ:PL 0/1:94,70:164:99:1659,0,2200 1 201197531 . C T 1542.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;CNN_1D=-2.797;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=1.412;SOR=0.692 GT:AD:DP:GQ:PL 0/1:61,63:124:99:1550,0,1345 1 201252866 . C T 1070.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;CNN_1D=-0.755;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-0.411;SOR=0.708 GT:AD:DP:GQ:PL 0/1:49,47:96:99:1078,0,1100 1 201285759 . A G 5364.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.295;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.23;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5378,568,0 1 201286771 . C T 1357.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;CNN_1D=-2.990;DP=129;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-1.026;SOR=0.622 GT:AD:DP:GQ:PL 0/1:67,62:129:99:1365,0,1475 1 201288955 . G A 1204.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;CNN_1D=-4.768;DP=143;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=-0.515;SOR=0.587 GT:AD:DP:GQ:PL 0/1:87,56:143:99:1212,0,1932 1 201334382 . G A 4542.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.045;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.75;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4556,474,0 1 201341175 . CAGAAG C 9656.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.191;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.28;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,215:215:99:9670,649,0 1 201355522 . T C 2086.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;CNN_1D=-5.659;DP=182;ExcessHet=3.0103;FS=3.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-0.146;SOR=0.894 GT:AD:DP:GQ:PL 0/1:93,89:182:99:2094,0,2020 1 201355943 . C T 958.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.179;CNN_1D=-2.989;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-0.269;SOR=0.632 GT:AD:DP:GQ:PL 0/1:70,48:118:99:966,0,1760 1 201383643 . A C 566.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;CNN_1D=0.755;DP=49;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.070;SOR=0.476 GT:AD:DP:GQ:PL 0/1:24,25:49:99:574,0,527 1 201837934 . CGT C 616.65 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;CNN_1D=0.448;DP=50;ExcessHet=3.0103;FS=4.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.27;ReadPosRankSum=2.533;SOR=1.828 GT:AD:DP:GQ:PL 0/1:7,25:32:8:624,0,8 1 201840464 . T C 598.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.395;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.48;SOR=0.990 GT:AD:DP:GQ:PL 1/1:0,21:21:63:612,63,0 1 201860626 . A G 7395.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-6.924;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.44;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7409,779,0 1 201970562 . T C 5384.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.857;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.64;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5398,564,0 1 201973565 . G A 2025.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;CNN_1D=-6.465;DP=191;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.687;SOR=0.847 GT:AD:DP:GQ:PL 0/1:95,96:191:99:2033,0,1958 1 201974712 . G C 1711.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;CNN_1D=-2.925;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=-0.094;SOR=0.674 GT:AD:DP:GQ:PL 0/1:64,72:136:99:1719,0,1335 1 201981862 . T C 5056.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;CNN_1D=-2.343;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.63;ReadPosRankSum=2.061;SOR=0.726 GT:AD:DP:GQ:PL 1/1:2,181:183:99:5070,499,0 1 202092360 . G A 6405.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.336;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.07;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6419,639,0 1 202092415 . A G 6991.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.415;CNN_1D=-4.056;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.40;ReadPosRankSum=-0.173;SOR=0.249 GT:AD:DP:GQ:PL 1/1:1,229:230:99:7005,653,0 1 202092580 . T C 4526.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.125;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.78;SOR=0.923 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4540,456,0 1 202129826 . T C 4452.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;CNN_1D=-1.291;DP=165;ExcessHet=3.0103;FS=3.144;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.98;ReadPosRankSum=-1.554;SOR=0.340 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4466,471,0 1 202183308 . C T 1055.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;CNN_1D=-1.791;DP=105;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=-0.055;SOR=0.737 GT:AD:DP:GQ:PL 0/1:57,48:105:99:1063,0,1369 1 202276494 . C T 1723.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.422;CNN_1D=-5.500;DP=160;ExcessHet=3.0103;FS=2.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-1.087;SOR=0.684 GT:AD:DP:GQ:PL 0/1:78,82:160:99:1731,0,1775 1 202287156 . C T 1935.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;CNN_1D=-3.409;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=1.136;SOR=0.720 GT:AD:DP:GQ:PL 0/1:60,86:146:99:1943,0,1256 1 202287206 . T C 3430.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.530;CNN_1D=2.475;DP=117;ExcessHet=3.0103;FS=3.200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.32;ReadPosRankSum=1.377;SOR=0.389 GT:AD:DP:GQ:PL 1/1:1,116:117:99:3444,314,0 1 202287537 . G A 1213.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;CNN_1D=-2.714;DP=129;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.754;SOR=0.584 GT:AD:DP:GQ:PL 0/1:72,57:129:99:1221,0,1629 1 202287754 . G A 1889.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;CNN_1D=-4.674;DP=163;ExcessHet=3.0103;FS=6.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-1.090;SOR=1.120 GT:AD:DP:GQ:PL 0/1:89,74:163:99:1897,0,2097 1 202287813 . T C 4555.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.328;CNN_1D=-1.508;DP=172;ExcessHet=3.0103;FS=5.612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.48;ReadPosRankSum=0.899;SOR=0.320 GT:AD:DP:GQ:PL 1/1:7,165:172:99:4569,302,0 1 202288293 . C T 1531.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;CNN_1D=-6.732;DP=176;ExcessHet=3.0103;FS=3.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-0.410;SOR=0.955 GT:AD:DP:GQ:PL 0/1:100,75:175:99:1539,0,2236 1 202304868 . T C 2376.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.501;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.11;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2390,273,0 1 202569600 . C T 576.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;CNN_1D=-1.005;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-0.479;SOR=0.652 GT:AD:DP:GQ:PL 0/1:46,30:76:99:584,0,1060 1 202574784 . G A 2647.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.086;CNN_1D=2.095;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQRankSum=-0.073;QD=27.29;ReadPosRankSum=-0.071;SOR=0.223 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2661,251,0 1 202705455 . G C 2891.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.580;CNN_1D=3.204;DP=107;ExcessHet=3.0103;FS=3.134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.02;ReadPosRankSum=0.275;SOR=0.343 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2905,296,0 1 202715284 . G A 2519.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.479;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.30;SOR=1.080 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2533,266,0 1 202718202 . G A 3020.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.506;CNN_1D=3.270;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.96;ReadPosRankSum=1.364;SOR=0.263 GT:AD:DP:GQ:PL 1/1:1,107:108:99:3034,286,0 1 202733238 . C T 1714.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.662;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.37;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1728,195,0 1 202887295 . G A 891.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;CNN_1D=2.177;DP=58;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=0.770;SOR=1.179 GT:AD:DP:GQ:PL 0/1:25,33:58:99:899,0,555 1 202888947 . T C 1067.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;CNN_1D=-3.183;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-2.348;SOR=0.699 GT:AD:DP:GQ:PL 0/1:61,55:116:99:1075,0,1307 1 203053768 . T C 2230.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.672;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.96;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2244,231,0 1 203098275 . T G 1399.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;CNN_1D=-1.369;DP=109;ExcessHet=3.0103;FS=3.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-0.760;SOR=0.444 GT:AD:DP:GQ:PL 0/1:48,61:109:99:1407,0,1028 1 203137784 . A ACT 4076.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.324;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.80;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,91:91:99:4090,277,0 1 203143725 . G C 1142.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;CNN_1D=-1.867;DP=101;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-1.892;SOR=0.994 GT:AD:DP:GQ:PL 0/1:50,51:101:99:1150,0,1214 1 203148633 . A G 3659.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.453;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.81;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3673,381,0 1 203194186 . C T 742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;CNN_1D=-0.679;DP=82;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.533;SOR=0.733 GT:AD:DP:GQ:PL 0/1:46,36:82:99:750,0,971 1 203317162 . C T 7059.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.039;CNN_1D=-6.435;DP=253;ExcessHet=3.0103;FS=3.276;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.90;ReadPosRankSum=-1.082;SOR=0.430 GT:AD:DP:GQ:PL 1/1:1,252:253:99:7073,715,0 1 203652444 . A G 4353.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.753;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.21;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4367,480,0 1 203667409 . T C 5063.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.835;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.44;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5077,534,0 1 203669371 . G A 1203.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;CNN_1D=-1.996;DP=117;ExcessHet=3.0103;FS=4.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=1.459;SOR=0.465 GT:AD:DP:GQ:PL 0/1:60,57:117:99:1211,0,1364 1 203740615 . T C 1233.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;CNN_1D=0.371;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=0.839;SOR=0.716 GT:AD:DP:GQ:PL 0/1:41,53:94:99:1241,0,864 1 203743122 . G A 1323.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;CNN_1D=-2.099;DP=124;ExcessHet=3.0103;FS=4.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-1.592;SOR=0.388 GT:AD:DP:GQ:PL 0/1:63,61:124:99:1331,0,1317 1 203743653 . C T 1546.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;CNN_1D=-5.648;DP=178;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.336;SOR=0.596 GT:AD:DP:GQ:PL 0/1:107,71:178:99:1554,0,2687 1 203766827 . T C 1223.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;CNN_1D=-0.488;DP=111;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.275;SOR=0.751 GT:AD:DP:GQ:PL 0/1:58,53:111:99:1231,0,1496 1 203787700 . T C 2589.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.362;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.54;SOR=0.780 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2603,282,0 1 203818973 . C A 2836.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;CNN_1D=-8.031;DP=259;ExcessHet=3.0103;FS=2.080;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=1.877;QD=10.95;ReadPosRankSum=0.876;SOR=0.813 GT:AD:DP:GQ:PL 0/1:133,126:259:99:2844,0,2974 1 203821314 . G A 1603.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;CNN_1D=-3.734;DP=134;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=53.62;MQRankSum=0.039;QD=11.97;ReadPosRankSum=0.204;SOR=0.610 GT:AD:DP:GQ:PL 0/1:60,74:134:99:1611,0,1209 1 204119089 . C T 494.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;CNN_1D=1.202;DP=49;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=1.765;SOR=0.783 GT:AD:DP:GQ:PL 0/1:31,18:49:99:502,0,799 1 204120952 . G T 1373.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;CNN_1D=-3.579;DP=133;ExcessHet=3.0103;FS=4.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-1.500;SOR=1.085 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1381,0,1720 1 204131186 . T G 845.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;CNN_1D=-3.123;DP=111;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=0.609;SOR=0.968 GT:AD:DP:GQ:PL 0/1:72,39:111:99:853,0,1717 1 204159611 . CT C 831.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.038;CNN_1D=-0.601;DP=75;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.236;SOR=0.413 GT:AD:DP:GQ:PL 0/1:47,27:74:99:839,0,1649 1 204159787 . G C 1931.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;CNN_1D=-5.624;DP=176;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=0.315;SOR=0.569 GT:AD:DP:GQ:PL 0/1:88,88:176:99:1939,0,2077 1 204161947 . C T 690.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;CNN_1D=-0.549;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-0.696;SOR=0.736 GT:AD:DP:GQ:PL 0/1:46,30:76:99:698,0,1174 1 204197346 . C T 1102.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;CNN_1D=-0.258;DP=86;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.622;SOR=0.823 GT:AD:DP:GQ:PL 0/1:38,48:86:99:1110,0,760 1 204379617 . T C 6346.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.214;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.79;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6360,639,0 1 204396830 . G A 1056.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;CNN_1D=-1.802;DP=97;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=1.206;SOR=0.860 GT:AD:DP:GQ:PL 0/1:50,47:97:99:1064,0,1168 1 204399061 . A G 1266.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;CNN_1D=-1.501;DP=104;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.091;SOR=0.672 GT:AD:DP:GQ:PL 0/1:69,35:104:99:1274,0,3452 1 204399064 . G A 1266.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;CNN_1D=-0.718;DP=104;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.156;SOR=0.672 GT:AD:DP:GQ:PL 0/1:69,35:104:99:1274,0,3452 1 204403659 . A G 4552.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.806;CNN_1D=-1.366;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.10;ReadPosRankSum=-1.602;SOR=0.819 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4566,454,0 1 204413297 . C T 1518.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;CNN_1D=1.488;DP=90;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=0.487;SOR=0.793 GT:AD:DP:GQ:PL 0/1:50,40:90:99:1526,0,2533 1 204413299 . G A 1518.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;CNN_1D=1.282;DP=91;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=0.724;SOR=0.760 GT:AD:DP:GQ:PL 0/1:51,40:91:99:1526,0,2533 1 204425028 . G A 3265.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;CNN_1D=0.469;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.21;ReadPosRankSum=-2.112;SOR=1.085 GT:AD:DP:GQ:PL 1/1:2,118:120:99:3279,309,0 1 204438334 . C T 4750.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.498;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.45;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4764,468,0 1 204438643 . G T 5236.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.891;CNN_1D=-1.595;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.09;ReadPosRankSum=-0.347;SOR=0.256 GT:AD:DP:GQ:PL 1/1:1,179:180:99:5250,500,0 1 204501383 . C T 2121.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.130;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.19;SOR=1.040 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2135,233,0 1 204518699 . G A 1556.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;CNN_1D=-4.757;DP=166;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-0.619;SOR=0.600 GT:AD:DP:GQ:PL 0/1:94,71:165:99:1564,0,2189 1 204587047 . G A 1882.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;CNN_1D=-1.691;DP=124;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.892;SOR=0.881 GT:AD:DP:GQ:PL 0/1:50,74:124:99:1890,0,1173 1 204587569 . G C 1753.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;CNN_1D=-4.311;DP=143;ExcessHet=3.0103;FS=2.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.408;SOR=0.909 GT:AD:DP:GQ:PL 0/1:73,70:143:99:1761,0,1897 1 204588140 . G A 1810.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;CNN_1D=-6.660;DP=180;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-0.507;SOR=0.829 GT:AD:DP:GQ:PL 0/1:100,80:180:99:1818,0,2549 1 204589101 . G A 2220.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;CNN_1D=-8.547;DP=218;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-2.328;SOR=0.891 GT:AD:DP:GQ:PL 0/1:117,101:218:99:2228,0,2709 1 204943947 . C A 1598.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;CNN_1D=-3.617;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=0.978;SOR=0.746 GT:AD:DP:GQ:PL 0/1:69,73:142:99:1606,0,1602 1 204970302 . T C 1603.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;CNN_1D=-3.059;DP=135;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.487;SOR=0.832 GT:AD:DP:GQ:PL 0/1:60,75:135:99:1611,0,1186 1 205031116 . C T 1056.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;CNN_1D=-2.237;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=0.065;SOR=0.735 GT:AD:DP:GQ:PL 0/1:54,47:101:99:1064,0,1214 1 205052939 . G A 1018.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;CNN_1D=-0.417;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.787;SOR=0.751 GT:AD:DP:GQ:PL 0/1:55,42:97:99:1026,0,1379 1 205053219 . C T 5194.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.211;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.37;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5208,513,0 1 205069404 . G A 618.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;CNN_1D=1.250;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-0.176;SOR=0.598 GT:AD:DP:GQ:PL 0/1:42,29:71:99:626,0,1018 1 205129319 . G A 1384.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;CNN_1D=-0.397;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.57;ReadPosRankSum=-0.156;SOR=0.665 GT:AD:DP:GQ:PL 0/1:38,57:95:99:1392,0,851 1 205130413 . A G 3006.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.325;CNN_1D=1.894;DP=117;ExcessHet=3.0103;FS=3.278;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=-1.674;SOR=0.446 GT:AD:DP:GQ:PL 1/1:1,116:117:99:3020,315,0 1 205180629 . G A 1016.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.878;CNN_1D=2.626;DP=66;ExcessHet=3.0103;FS=12.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=1.150;SOR=0.114 GT:AD:DP:GQ:PL 0/1:25,41:66:99:1024,0,697 1 205238275 . A G 1569.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;CNN_1D=-5.136;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-2.084;SOR=0.672 GT:AD:DP:GQ:PL 0/1:93,72:165:99:1577,0,2162 1 205238530 . C T 1139.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;CNN_1D=-3.812;DP=123;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-1.048;SOR=0.659 GT:AD:DP:GQ:PL 0/1:73,50:123:99:1147,0,1813 1 205240251 . C T 1292.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;CNN_1D=-4.430;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=0.099;SOR=0.633 GT:AD:DP:GQ:PL 0/1:67,60:127:99:1300,0,1481 1 205272918 . G A 1205.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;CNN_1D=-1.646;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=0.338;SOR=0.696 GT:AD:DP:GQ:PL 0/1:57,53:110:99:1213,0,1289 1 205275421 . A G 4484.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.594;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.38;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4498,473,0 1 205290794 . G A 1317.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;CNN_1D=-5.978;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=0.572;SOR=0.701 GT:AD:DP:GQ:PL 0/1:91,61:152:99:1325,0,2209 1 205290814 . T C 1345.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;CNN_1D=-6.081;DP=163;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=0.687;SOR=0.571 GT:AD:DP:GQ:PL 0/1:98,65:163:99:1353,0,2335 1 205308335 . G A 1399.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;CNN_1D=0.108;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-0.170;SOR=0.706 GT:AD:DP:GQ:PL 0/1:44,59:103:99:1407,0,991 1 205308368 . C T 1769.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;CNN_1D=-2.638;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=-0.586;SOR=0.747 GT:AD:DP:GQ:PL 0/1:52,77:129:99:1777,0,1171 1 205492756 . A G 3796.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.726;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.66;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3810,384,0 1 205628428 . C G 1369.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;CNN_1D=-3.993;DP=152;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=1.949;SOR=0.596 GT:AD:DP:GQ:PL 0/1:91,61:152:99:1377,0,2282 1 205740668 . G C 1862.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;CNN_1D=-3.334;DP=150;ExcessHet=3.0103;FS=3.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=1.053;SOR=0.430 GT:AD:DP:GQ:PL 0/1:66,84:150:99:1870,0,1461 1 205811828 . A T 1608.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;CNN_1D=-2.627;DP=128;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=0.350;SOR=0.622 GT:AD:DP:GQ:PL 0/1:57,71:128:99:1616,0,1172 1 205812912 . A G 1323.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;CNN_1D=0.588;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=-0.126;SOR=0.747 GT:AD:DP:GQ:PL 0/1:35,54:89:99:1331,0,713 1 205814497 . T C 2384.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.536;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.07;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2398,246,0 1 205884188 . G T 1617.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;CNN_1D=-8.711;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=0.736;SOR=0.704 GT:AD:DP:GQ:PL 0/1:128,81:209:99:1625,0,3118 1 206327510 . T C 1297.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;CNN_1D=-3.666;DP=135;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.366;SOR=0.618 GT:AD:DP:GQ:PL 0/1:72,62:134:99:1305,0,1659 1 206328803 . T C 1603.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;CNN_1D=-2.291;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-0.318;SOR=0.651 GT:AD:DP:GQ:PL 0/1:62,67:129:99:1611,0,1442 1 206516261 . C T 1004.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807;CNN_1D=-0.909;DP=87;ExcessHet=3.0103;FS=2.940;MLEAC=1;MLEAF=0.500;MQ=51.55;MQRankSum=1.396;QD=11.55;ReadPosRankSum=-1.417;SOR=0.434 GT:AD:DP:GQ:PL 0/1:41,46:87:99:1012,0,1023 1 206566048 . G C 328.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;CNN_1D=-15.750;DP=100;ExcessHet=3.0103;FS=29.003;MLEAC=1;MLEAF=0.500;MQ=46.57;MQRankSum=-6.289;QD=3.29;ReadPosRankSum=-4.549;SOR=4.861 GT:AD:DP:GQ:PL 0/1:81,19:100:99:336,0,2162 1 206566195 . C T 349.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968;CNN_1D=-16.118;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.02;MQRankSum=-2.248;QD=0.85;ReadPosRankSum=-0.712;SOR=0.708 GT:AD:DP:GQ:PL 0/1:349,63:412:99:357,0,7884 1 206566903 . G A 188.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.598;CNN_1D=-15.878;DP=210;ExcessHet=3.0103;FS=32.162;MLEAC=1;MLEAF=0.500;MQ=52.19;MQRankSum=-6.537;QD=0.90;ReadPosRankSum=-1.783;SOR=3.672 GT:AD:DP:GQ:PL 0/1:186,24:210:99:196,0,7305 1 206566904 . T C 2915.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.937;CNN_1D=-15.751;DP=214;ExcessHet=3.0103;FS=14.311;MLEAC=1;MLEAF=0.500;MQ=52.19;MQRankSum=-12.998;QD=13.62;ReadPosRankSum=-3.118;SOR=1.449 GT:AD:DP:GQ:PL 0/1:104,110:214:99:2923,0,2222 1 206579798 . T C 1013.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.257;CNN_1D=-12.429;DP=62;ExcessHet=3.0103;FS=78.523;MLEAC=1;MLEAF=0.500;MQ=27.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=0.752;SOR=7.327 GT:AD:DP:GQ:PL 0/1:24,38:62:99:1021,0,576 1 206579936 . A G 940.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.209;CNN_1D=-11.066;DP=146;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=31.41;MQRankSum=-1.559;QD=6.44;ReadPosRankSum=-0.485;SOR=0.905 GT:AD:DP:GQ:PL 0/1:98,48:146:99:948,0,2297 1 206603535 . G A 2902.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.516;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.90;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2916,312,0 1 206634429 . A G 5194.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.430;CNN_1D=-2.338;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.86;ReadPosRankSum=0.514;SOR=1.090 GT:AD:DP:GQ:PL 1/1:4,176:180:99:5208,441,0 1 206647742 . A G 4034.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.264;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.01;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4048,431,0 1 206647787 . T C 3237.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.760;CNN_1D=2.115;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.20;ReadPosRankSum=-0.204;SOR=0.237 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3251,319,0 1 206651107 . G A 4839.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.633;CNN_1D=-2.267;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.73;ReadPosRankSum=-0.197;SOR=0.774 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4853,493,0 1 206680983 . A C 1364.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.970;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.28;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1378,150,0 1 206711610 . G A 1331.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;CNN_1D=-1.728;DP=121;ExcessHet=3.0103;FS=4.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=0.880;SOR=0.387 GT:AD:DP:GQ:PL 0/1:58,63:121:99:1339,0,1312 1 206773659 . A G 3304.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.184;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.53;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3318,359,0 1 206905043 . C T 1521.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;CNN_1D=-2.997;DP=146;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=2.465;SOR=0.736 GT:AD:DP:GQ:PL 0/1:76,69:145:99:1529,0,1672 1 207015957 . T C 2214.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.693;CNN_1D=3.352;DP=74;ExcessHet=3.0103;FS=3.378;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.92;ReadPosRankSum=-0.445;SOR=0.533 GT:AD:DP:GQ:PL 1/1:1,73:74:99:2228,182,0 1 207109116 . C T 860.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;CNN_1D=-2.342;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-0.891;SOR=0.699 GT:AD:DP:GQ:PL 0/1:58,42:100:99:868,0,1368 1 207109167 . G A 614.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;CNN_1D=0.236;DP=64;ExcessHet=3.0103;FS=3.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.656;SOR=1.234 GT:AD:DP:GQ:PL 0/1:38,26:64:99:622,0,958 1 207110936 . T C 992.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;CNN_1D=-0.604;DP=88;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.806;SOR=0.902 GT:AD:DP:GQ:PL 0/1:46,42:88:99:1000,0,1156 1 207134104 . G T 1745.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;CNN_1D=-4.178;DP=160;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=1.845;SOR=0.527 GT:AD:DP:GQ:PL 0/1:86,74:160:99:1753,0,2097 1 207140440 . C T 1270.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;CNN_1D=-5.596;DP=168;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=2.502;SOR=0.736 GT:AD:DP:GQ:PL 0/1:103,65:168:99:1278,0,2353 1 207143422 . A G 1137.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;CNN_1D=-2.966;DP=125;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=0.933;SOR=0.869 GT:AD:DP:GQ:PL 0/1:67,57:124:99:1145,0,1467 1 207195779 . A G 3913.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.909;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.87;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3927,393,0 1 207238419 . C T 1003.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;CNN_1D=-0.407;DP=86;ExcessHet=3.0103;FS=2.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-1.098;SOR=0.828 GT:AD:DP:GQ:PL 0/1:41,45:86:99:1011,0,917 1 207297680 . T C 2932.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.908;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.41;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2946,332,0 1 207300070 . G A 1118.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;CNN_1D=0.725;DP=84;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=-0.468;SOR=0.923 GT:AD:DP:GQ:PL 0/1:38,46:84:99:1126,0,837 1 207304900 . T C 1214.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;CNN_1D=-1.540;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=0.417;SOR=0.623 GT:AD:DP:GQ:PL 0/1:47,52:99:99:1222,0,1061 1 207653364 . A G 1267.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.982;CNN_1D=-0.195;DP=91;ExcessHet=3.0103;FS=3.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=0.109;SOR=0.821 GT:AD:DP:GQ:PL 0/1:37,54:91:99:1275,0,705 1 207653395 . C A 642.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;CNN_1D=-0.018;DP=78;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=1.072;SOR=0.458 GT:AD:DP:GQ:PL 0/1:45,33:78:99:650,0,1124 1 207679307 . A G 4238.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.027;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.56;QD=28.64;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4252,443,0 1 207715740 . T C 81.80 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-1.320;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=27.00;QD=27.27;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:95,9,0 1 207726161 . G T 101.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;CNN_1D=-6.039;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=25.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.245;SOR=0.518 GT:AD:DP:GQ:PL 0/1:17,6:23:99:109,0,436 1 207753621 . A G 2576.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;CNN_1D=-6.990;DP=212;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.215;QD=12.15;ReadPosRankSum=0.781;SOR=0.785 GT:AD:DP:GQ:PL 0/1:96,116:212:99:2584,0,2142 1 207760773 . C T 1196.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;CNN_1D=-3.111;DP=123;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=0.074;SOR=0.578 GT:AD:DP:GQ:PL 0/1:68,55:123:99:1204,0,1493 1 207782916 . A T 4537.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.747;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.72;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4551,474,0 1 207782931 . A G 1603.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;CNN_1D=-3.223;DP=143;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=2.048;SOR=0.616 GT:AD:DP:GQ:PL 0/1:67,75:142:99:1611,0,1449 1 207790088 . C G 2414.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;CNN_1D=-9.835;DP=234;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.488;QD=10.32;ReadPosRankSum=-1.113;SOR=0.730 GT:AD:DP:GQ:PL 0/1:120,114:234:99:2422,0,2746 1 207795320 . A G 870.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.851;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.00;SOR=0.760 GT:AD:DP:GQ:PL 1/1:0,29:29:87:884,87,0 1 207881557 . A G 1989.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;CNN_1D=-6.855;DP=184;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.913;QD=10.81;ReadPosRankSum=-1.508;SOR=0.784 GT:AD:DP:GQ:PL 0/1:94,90:184:99:1997,0,2089 1 207890866 . T C 1434.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.941;CNN_1D=-3.613;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-2.086;QD=11.96;ReadPosRankSum=-1.101;SOR=0.735 GT:AD:DP:GQ:PL 0/1:62,58:120:99:1442,0,1483 1 208062973 . A T 907.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;CNN_1D=0.984;DP=74;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=0.065;SOR=0.498 GT:AD:DP:GQ:PL 0/1:36,38:74:99:915,0,821 1 208207839 . G A 1245.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;CNN_1D=-3.319;DP=120;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-2.352;SOR=0.937 GT:AD:DP:GQ:PL 0/1:63,57:120:99:1253,0,1322 1 208390155 . C T 4745.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.448;CNN_1D=1.608;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.58;ReadPosRankSum=-0.027;SOR=0.564 GT:AD:DP:GQ:PL 1/1:3,111:114:99:4759,168,0 1 208390162 . T C 4794.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.116;CNN_1D=2.285;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.30;ReadPosRankSum=-0.474;SOR=0.547 GT:AD:DP:GQ:PL 1/1:3,112:115:99:4808,171,0 1 209799253 . A G 1115.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;CNN_1D=-1.325;DP=99;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=0.238;SOR=0.878 GT:AD:DP:GQ:PL 0/1:49,49:98:99:1123,0,1074 1 209807972 . G A 4423.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.134;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=0.800 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4437,467,0 1 209811886 . T G 2886.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.689;CNN_1D=2.149;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.97;ReadPosRankSum=-0.679;SOR=0.876 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2900,271,0 1 209823354 . G A 855.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;CNN_1D=-1.485;DP=104;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=1.283;SOR=0.892 GT:AD:DP:GQ:PL 0/1:62,42:104:99:863,0,1479 1 209933528 . G A 1622.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;CNN_1D=-4.525;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-0.236;SOR=0.720 GT:AD:DP:GQ:PL 0/1:79,76:155:99:1630,0,1688 1 209948711 . A C 999.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;CNN_1D=-2.115;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=0.136;SOR=0.637 GT:AD:DP:GQ:PL 0/1:70,46:116:99:1007,0,1628 1 209950760 . C G 3135.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.328;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.26;SOR=0.820 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3149,344,0 1 209956542 . C A 1857.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;CNN_1D=-5.292;DP=173;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=0.602;SOR=0.846 GT:AD:DP:GQ:PL 0/1:98,75:173:99:1865,0,2568 1 209964080 . C T 1859.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;CNN_1D=-4.861;DP=159;ExcessHet=3.0103;FS=6.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-0.783;SOR=1.193 GT:AD:DP:GQ:PL 0/1:79,79:158:99:1867,0,1885 1 209968684 . C A 4613.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.174;CNN_1D=-1.902;DP=167;ExcessHet=3.0103;FS=3.225;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.79;ReadPosRankSum=-0.052;SOR=0.399 GT:AD:DP:GQ:PL 1/1:1,165:166:99:4627,457,0 1 209969902 . G C 601.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;CNN_1D=2.799;DP=50;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=2.123;SOR=0.356 GT:AD:DP:GQ:PL 0/1:22,28:50:99:609,0,549 1 210004199 . C G 949.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;CNN_1D=-1.612;DP=97;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=1.057;SOR=0.841 GT:AD:DP:GQ:PL 0/1:54,43:97:99:957,0,1328 1 210004332 . G A 1219.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679;CNN_1D=-2.834;DP=119;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.437;SOR=0.849 GT:AD:DP:GQ:PL 0/1:62,56:118:99:1227,0,1512 1 210006603 . C T 1710.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;CNN_1D=-5.054;DP=169;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=1.003;SOR=0.610 GT:AD:DP:GQ:PL 0/1:86,82:168:99:1718,0,1864 1 210577873 . G C 4831.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.943;CNN_1D=0.812;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.17;ReadPosRankSum=0.063;SOR=0.851 GT:AD:DP:GQ:PL 1/1:2,134:136:99:4845,362,0 1 210577884 . G A 1436.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;CNN_1D=-3.096;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-0.152;SOR=0.643 GT:AD:DP:GQ:PL 0/1:71,63:134:99:1444,0,1642 1 210857457 . A G 2719.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.279;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.62;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2733,285,0 1 211280724 . TA T 937.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.936;CNN_1D=0.512;DP=57;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.37;ReadPosRankSum=-0.644;SOR=0.405 GT:AD:DP:GQ:PL 1/1:3,43:46:86:916,86,0 1 212142054 . GA G 795.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;CNN_1D=0.522;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.89;ReadPosRankSum=-0.409;SOR=0.793 GT:AD:DP:GQ:PL 0/1:5,35:40:10:803,0,10 1 212273639 . C T 3220.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.781;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.01;SOR=1.350 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3234,332,0 1 212274413 . A C 3441.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.942;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.72;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3455,336,0 1 212515613 . C T 808.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;CNN_1D=2.580;DP=59;ExcessHet=3.0103;FS=5.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.71;ReadPosRankSum=-1.135;SOR=0.275 GT:AD:DP:GQ:PL 0/1:23,36:59:99:816,0,475 1 212560327 . A G 4771.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.322;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4785,489,0 1 212619339 . T C 1273.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;CNN_1D=-1.677;DP=116;ExcessHet=3.0103;FS=4.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-1.231;SOR=0.387 GT:AD:DP:GQ:PL 0/1:53,63:116:99:1281,0,1129 1 212798977 . A G 1725.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;CNN_1D=-4.252;DP=150;ExcessHet=3.0103;FS=2.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=1.561;SOR=0.480 GT:AD:DP:GQ:PL 0/1:74,75:149:99:1733,0,1904 1 212799870 . A G 1469.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;CNN_1D=-3.802;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=1.537;SOR=0.685 GT:AD:DP:GQ:PL 0/1:78,63:141:99:1477,0,1877 1 212799949 . C T 1470.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;CNN_1D=-3.430;DP=137;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=0.153;SOR=0.787 GT:AD:DP:GQ:PL 0/1:72,65:137:99:1478,0,1564 1 212911836 . T C 3300.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.180;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.21;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3314,350,0 1 213009469 . A G 1455.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.545;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.96;SOR=1.659 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1469,141,0 1 213031948 . G C 1465.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;CNN_1D=-1.427;DP=115;ExcessHet=3.0103;FS=5.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=3.036;SOR=0.824 GT:AD:DP:GQ:PL 0/1:58,57:115:99:1473,0,1393 1 213068595 . C T 1085.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;CNN_1D=-2.253;DP=109;ExcessHet=3.0103;FS=4.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.631;SOR=0.807 GT:AD:DP:GQ:PL 0/1:55,54:109:99:1093,0,1163 1 213124992 . G C 1245.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;CNN_1D=-3.580;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=1.347;SOR=0.682 GT:AD:DP:GQ:PL 0/1:81,53:134:99:1253,0,2091 1 213186531 . G A 1143.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;CNN_1D=-2.140;DP=119;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=2.039;SOR=0.614 GT:AD:DP:GQ:PL 0/1:67,52:119:99:1151,0,1682 1 214492286 . G A 3963.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.845;CNN_1D=1.060;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.91;ReadPosRankSum=-0.502;SOR=0.812 GT:AD:DP:GQ:PL 1/1:2,140:142:99:3977,376,0 1 214571251 . A C 1711.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.568;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.00;SOR=0.950 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1725,177,0 1 214826196 . G A 1924.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.884;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.29;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1938,204,0 1 214830617 . A G 3935.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.069;CNN_1D=1.547;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.37;ReadPosRankSum=1.368;SOR=0.962 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3949,353,0 1 214837110 . C G 3099.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.416;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.38;SOR=1.454 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3113,306,0 1 215741053 . T G 2998.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.260;CNN_1D=1.786;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.53;ReadPosRankSum=0.188;SOR=0.686 GT:AD:DP:GQ:PL 1/1:3,110:113:99:3012,251,0 1 215848587 . T C 2889.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.488;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2903,294,0 1 215848641 . T C 3317.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.129;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.88;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3331,332,0 1 215914883 . G GA 33.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;CNN_1D=-1.301;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=2.178;SOR=0.906 GT:AD:DP:GQ:PL 0/1:41,7:48:41:41,0,933 1 215960167 . T G 3432.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.908;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.84;SOR=1.169 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3446,345,0 1 216172380 . A G 2123.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.660;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.69;SOR=1.457 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2137,221,0 1 216219781 . A G 1783.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.421;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.72;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1797,180,0 1 216348764 . C T 3063.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.994;CNN_1D=1.697;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.36;ReadPosRankSum=-2.006;SOR=0.941 GT:AD:DP:GQ:PL 1/1:2,106:108:99:3077,275,0 1 216592003 . T C 1955.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.888;CNN_1D=2.738;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-0.390;SOR=1.288 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1969,178,0 1 217856626 . G A 509.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.727;CNN_1D=1.222;DP=51;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=-0.801;SOR=0.786 GT:AD:DP:GQ:PL 0/1:25,26:51:99:517,0,603 1 217915324 . C T 752.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.267;CNN_1D=-1.954;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=0.209;SOR=0.710 GT:AD:DP:GQ:PL 0/1:61,39:100:99:760,0,1379 1 217947738 . G A 2824.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.567;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.42;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2838,308,0 1 219383867 . T C 883.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.813;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.97;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,34:34:99:897,101,0 1 219383905 . A G 1390.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.721;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.73;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1404,156,0 1 220154768 . C T 555.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;CNN_1D=0.418;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.591;SOR=0.641 GT:AD:DP:GQ:PL 0/1:35,26:61:99:563,0,742 1 220197625 . G T 1763.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.360;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.98;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1777,189,0 1 220275762 . T A 1205.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;CNN_1D=1.902;DP=76;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=3.145;SOR=0.511 GT:AD:DP:GQ:PL 0/1:29,47:76:99:1213,0,675 1 221057646 . C T 2725.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149;CNN_1D=-0.717;DP=133;ExcessHet=3.0103;FS=5.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.65;ReadPosRankSum=-2.045;SOR=0.483 GT:AD:DP:GQ:PL 0/1:58,74:132:99:2733,0,3186 1 221057662 . G A 2528.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.660;CNN_1D=-0.731;DP=128;ExcessHet=3.0103;FS=6.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.75;ReadPosRankSum=-0.506;SOR=0.587 GT:AD:DP:GQ:PL 0/1:62,66:128:99:2536,0,3266 1 221912361 . T C 4760.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.293;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.91;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4774,462,0 1 221912808 . T C 2273.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.461;CNN_1D=-5.427;DP=179;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=-0.730;SOR=0.886 GT:AD:DP:GQ:PL 0/1:89,89:178:99:2281,0,2203 1 222721288 . C T 1377.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;CNN_1D=-4.794;DP=142;ExcessHet=3.0103;FS=6.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.082;SOR=1.061 GT:AD:DP:GQ:PL 0/1:81,61:142:99:1385,0,2048 1 222732027 . T C 331.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;CNN_1D=0.854;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=1.262;SOR=0.807 GT:AD:DP:GQ:PL 0/1:31,17:48:99:339,0,721 1 222734803 . G C 1296.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;CNN_1D=-3.826;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.517;SOR=0.705 GT:AD:DP:GQ:PL 0/1:74,60:134:99:1304,0,1768 1 222798106 . G A 785.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.633;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.07;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,29:29:87:799,87,0 1 222800913 . A G 793.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;CNN_1D=0.879;DP=56;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=0.127;SOR=1.179 GT:AD:DP:GQ:PL 0/1:24,31:55:99:801,0,566 1 222802006 . A G 3602.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.371;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.75;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3616,329,0 1 222802803 . T G 1744.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.400;CNN_1D=-3.570;DP=147;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=0.971;SOR=0.733 GT:AD:DP:GQ:PL 0/1:76,71:147:99:1752,0,1750 1 222802926 . C T 1550.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;CNN_1D=-3.430;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-0.712;SOR=0.728 GT:AD:DP:GQ:PL 0/1:73,68:141:99:1558,0,1683 1 222826481 . G A 1327.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;CNN_1D=1.148;DP=84;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=-1.704;SOR=0.571 GT:AD:DP:GQ:PL 0/1:28,56:84:99:1335,0,527 1 222833601 . T C 3118.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.351;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.88;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3132,347,0 1 222923351 . A G 1660.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;CNN_1D=-4.756;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.103;SOR=0.654 GT:AD:DP:GQ:PL 0/1:82,76:158:99:1668,0,1810 1 223116472 . G A 3371.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.029;CNN_1D=-5.562;DP=201;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=-1.010;SOR=0.613 GT:AD:DP:GQ:PL 0/1:112,89:201:99:3379,0,5851 1 223116474 . G T 3371.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000;CNN_1D=-5.587;DP=201;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=-0.732;SOR=0.613 GT:AD:DP:GQ:PL 0/1:113,88:201:99:3379,0,5851 1 223177574 . A G 1717.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;CNN_1D=-4.835;DP=156;ExcessHet=3.0103;FS=3.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=0.257;SOR=0.621 GT:AD:DP:GQ:PL 0/1:77,79:156:99:1725,0,1813 1 223178561 . A C 2691.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;CNN_1D=-8.427;DP=233;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-1.059;SOR=0.642 GT:AD:DP:GQ:PL 0/1:115,118:233:99:2699,0,2688 1 223283910 . A G 4164.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.005;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.32;SOR=0.780 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4178,426,0 1 223284069 . G A 1802.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;CNN_1D=-3.358;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=1.389;SOR=0.669 GT:AD:DP:GQ:PL 0/1:74,73:147:99:1810,0,1836 1 223284528 . A G 2263.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.589;CNN_1D=-5.679;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-0.872;SOR=0.687 GT:AD:DP:GQ:PL 0/1:88,92:180:99:2271,0,1946 1 223567803 . G A 1800.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;CNN_1D=-5.997;DP=177;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.867;SOR=0.821 GT:AD:DP:GQ:PL 0/1:96,81:177:99:1808,0,2355 1 223717484 . G A 3817.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.964;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.27;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3831,405,0 1 223718651 . G A 1229.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;CNN_1D=-2.199;DP=114;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=0.020;SOR=0.785 GT:AD:DP:GQ:PL 0/1:59,55:114:99:1237,0,1431 1 223718670 . G A 1042.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;CNN_1D=-1.520;DP=97;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-0.766;SOR=0.941 GT:AD:DP:GQ:PL 0/1:51,46:97:99:1050,0,1253 1 223722780 . G A 908.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;CNN_1D=-1.483;DP=90;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.632;SOR=0.816 GT:AD:DP:GQ:PL 0/1:49,41:90:99:916,0,1126 1 223813586 . G T 1153.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;CNN_1D=-3.058;DP=125;ExcessHet=3.0103;FS=3.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=1.147;SOR=0.942 GT:AD:DP:GQ:PL 0/1:72,53:125:99:1161,0,1736 1 223900408 . C G 3336.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.531;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.26;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3350,342,0 1 223905532 . G A 1291.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;CNN_1D=-1.772;DP=124;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=1.332;SOR=0.522 GT:AD:DP:GQ:PL 0/1:62,62:124:99:1299,0,1370 1 223934720 . G A 2775.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.583;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.03;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2789,297,0 1 223940605 . T C 1379.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;CNN_1D=-5.585;DP=159;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=-0.633;SOR=0.636 GT:AD:DP:GQ:PL 0/1:90,69:159:99:1387,0,2030 1 223971862 . C T 1100.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;CNN_1D=-2.337;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-0.485;SOR=0.732 GT:AD:DP:GQ:PL 0/1:64,48:112:99:1108,0,1552 1 224492746 . C T 1916.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.260;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.18;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1930,204,0 1 224495852 . C T 4336.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.673;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.62;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4350,469,0 1 224505570 . T TAA 2363.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.511;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.94;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,52:52:99:2377,162,0 1 225600351 . TA T 52.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;CNN_1D=-1.571;DP=36;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.214;SOR=0.768 GT:AD:DP:GQ:PL 0/1:21,7:28:60:60,0,415 1 225607144 . C T 1998.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.924;CNN_1D=3.029;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.14;ReadPosRankSum=-0.956;SOR=1.478 GT:AD:DP:GQ:PL 1/1:2,69:71:99:2012,178,0 1 225609884 . A G 3665.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.539;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.95;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3679,408,0 1 225611661 . C T 2857.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.270;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.95;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2871,317,0 1 225707271 . G GA 84.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;CNN_1D=-2.892;DP=90;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.377;SOR=0.706 GT:AD:DP:GQ:PL 0/1:58,17:75:92:92,0,1035 1 226019633 . T C 1628.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;CNN_1D=-3.468;DP=148;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=0.816;SOR=0.541 GT:AD:DP:GQ:PL 0/1:72,76:148:99:1636,0,1458 1 226059727 . G A 1102.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;CNN_1D=-1.004;DP=103;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=0.961;SOR=0.719 GT:AD:DP:GQ:PL 0/1:51,51:102:99:1110,0,1114 1 226074563 . T G 1458.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;CNN_1D=-5.330;DP=136;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-2.810;QD=10.73;ReadPosRankSum=0.393;SOR=0.596 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1466,0,1688 1 226352498 . T G 929.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;CNN_1D=-1.074;DP=87;ExcessHet=3.0103;FS=2.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-0.770;SOR=0.418 GT:AD:DP:GQ:PL 0/1:41,46:87:99:937,0,854 1 226474132 . G A 1683.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.048;CNN_1D=3.389;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.59;ReadPosRankSum=0.597;SOR=0.314 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1697,142,0 1 226570840 . T C 3780.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.917;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.00;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3794,405,0 1 226573364 . A G 1536.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;CNN_1D=-2.940;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=0.293;SOR=0.657 GT:AD:DP:GQ:PL 0/1:67,72:139:99:1544,0,1468 1 226580021 . G T 1213.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;CNN_1D=-1.495;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=0.529;SOR=0.664 GT:AD:DP:GQ:PL 0/1:57,56:113:99:1221,0,1271 1 226923264 . G A 3922.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.007;CNN_1D=-0.423;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.32;ReadPosRankSum=-0.090;SOR=0.654 GT:AD:DP:GQ:PL 1/1:5,144:149:99:3936,307,0 1 226923505 . G T 3790.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.108;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.08;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3804,378,0 1 226923938 . A C 3584.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.206;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.19;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3598,324,0 1 226924875 . ACTGCCGCTG A 4991.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;CNN_1D=0.962;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=32.11;ReadPosRankSum=0.765;SOR=0.745 GT:AD:DP:GQ:PL 1/1:2,117:119:99:5005,233,0 1 227069677 . T C 1475.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;CNN_1D=-1.736;DP=112;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=-1.484;SOR=0.575 GT:AD:DP:GQ:PL 0/1:45,67:112:99:1483,0,1019 1 227149203 . G A 1807.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;CNN_1D=-3.890;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=2.378;SOR=0.724 GT:AD:DP:GQ:PL 0/1:82,79:161:99:1815,0,1779 1 227172290 . C T 2499.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;CNN_1D=-8.447;DP=235;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=2.044;SOR=0.615 GT:AD:DP:GQ:PL 0/1:120,113:233:99:2507,0,2597 1 227174145 . T C 823.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;CNN_1D=-0.558;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.948;SOR=0.756 GT:AD:DP:GQ:PL 0/1:47,34:81:99:831,0,1201 1 227174210 . T C 1679.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.641;CNN_1D=-4.722;DP=164;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-1.479;SOR=0.489 GT:AD:DP:GQ:PL 0/1:84,80:164:99:1687,0,2150 1 227182033 . G A 5334.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.731;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.78;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5348,573,0 1 227182575 . A G 594.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;CNN_1D=-2.569;DP=94;ExcessHet=3.0103;FS=2.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-0.519;SOR=1.005 GT:AD:DP:GQ:PL 0/1:63,31:94:99:602,0,1492 1 227216662 . T C 1776.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;CNN_1D=-4.276;DP=152;ExcessHet=3.0103;FS=3.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-1.021;SOR=0.444 GT:AD:DP:GQ:PL 0/1:80,72:152:99:1784,0,1965 1 227387361 . A G 1125.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.536;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.79;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1139,125,0 1 227922918 . A C 546.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;CNN_1D=1.617;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=0.039;SOR=0.715 GT:AD:DP:GQ:PL 0/1:27,23:50:99:554,0,709 1 227923081 . G A 1844.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.788;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.37;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1858,194,0 1 227935444 . A G 3659.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;CNN_1D=-3.508;DP=179;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.44;ReadPosRankSum=0.435;SOR=0.855 GT:AD:DP:GQ:PL 0/1:85,94:179:99:3667,0,4247 1 227935448 . A G 3601.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.954;CNN_1D=-3.296;DP=177;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.35;ReadPosRankSum=0.836;SOR=0.859 GT:AD:DP:GQ:PL 0/1:85,92:177:99:3609,0,4253 1 227935762 . G A 2141.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968;CNN_1D=-5.083;DP=179;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-2.303;SOR=0.641 GT:AD:DP:GQ:PL 0/1:84,95:179:99:2149,0,2027 1 228033197 . A G 1800.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;CNN_1D=-3.692;DP=141;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=-0.576;SOR=0.605 GT:AD:DP:GQ:PL 0/1:61,80:141:99:1808,0,1304 1 228113046 . C T 1592.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;CNN_1D=-4.177;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=1.593;SOR=0.698 GT:AD:DP:GQ:PL 0/1:80,72:152:99:1600,0,1827 1 228113135 . G C 1442.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;CNN_1D=-1.380;DP=120;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=1.832;SOR=0.552 GT:AD:DP:GQ:PL 0/1:57,63:120:99:1450,0,1284 1 228113163 . A G 3117.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.503;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.41;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3131,318,0 1 228353651 . G C 910.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;CNN_1D=1.555;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-1.027;SOR=0.743 GT:AD:DP:GQ:PL 0/1:24,39:63:99:918,0,531 1 228362682 . G A 959.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;CNN_1D=0.033;DP=86;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=0.696;SOR=0.795 GT:AD:DP:GQ:PL 0/1:45,41:86:99:967,0,1107 1 228399482 . C G 643.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;CNN_1D=1.823;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=1.241;SOR=0.693 GT:AD:DP:GQ:PL 0/1:23,28:51:99:651,0,547 1 228399766 . T C 1332.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;CNN_1D=-2.561;DP=118;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.971;SOR=0.883 GT:AD:DP:GQ:PL 0/1:59,58:117:99:1340,0,1311 1 228402047 . A G 2276.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;CNN_1D=-8.400;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-1.853;SOR=0.719 GT:AD:DP:GQ:PL 0/1:119,98:217:99:2284,0,2842 1 228402121 . A G 1139.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.499;CNN_1D=-3.666;DP=121;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=0.513;SOR=1.084 GT:AD:DP:GQ:PL 0/1:74,47:121:99:1147,0,1844 1 228402508 . C T 1255.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;CNN_1D=-1.061;DP=105;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=1.760;SOR=0.616 GT:AD:DP:GQ:PL 0/1:51,53:104:99:1263,0,1102 1 228407260 . G A 1707.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;CNN_1D=-3.851;DP=149;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-1.301;SOR=0.619 GT:AD:DP:GQ:PL 0/1:75,74:149:99:1715,0,1762 1 228412227 . T C 5706.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;CNN_1D=-10.735;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.959;QD=19.88;ReadPosRankSum=-1.785;SOR=0.700 GT:AD:DP:GQ:PL 0/1:140,147:287:99:5714,0,6017 1 228412228 . G A 5706.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;CNN_1D=-10.253;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.972;QD=19.88;ReadPosRankSum=-1.649;SOR=0.675 GT:AD:DP:GQ:PL 0/1:141,146:287:99:5714,0,6017 1 228412308 . G A 3220.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;CNN_1D=-14.230;DP=313;ExcessHet=3.0103;FS=4.382;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.210;QD=10.29;ReadPosRankSum=0.812;SOR=0.897 GT:AD:DP:GQ:PL 0/1:166,147:313:99:3228,0,3690 1 228431095 . A G 2035.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;CNN_1D=-7.519;DP=208;ExcessHet=3.0103;FS=1.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.321;SOR=0.793 GT:AD:DP:GQ:PL 0/1:115,93:208:99:2043,0,2673 1 228433217 . A G 2831.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;CNN_1D=-10.437;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.411;QD=10.98;ReadPosRankSum=0.456;SOR=0.693 GT:AD:DP:GQ:PL 0/1:129,129:258:99:2839,0,2794 1 228434395 . T C 1958.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;CNN_1D=-7.216;DP=208;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=2.156;SOR=0.818 GT:AD:DP:GQ:PL 0/1:119,89:208:99:1966,0,2874 1 228434467 . T C 1717.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;CNN_1D=-6.447;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.641;SOR=0.699 GT:AD:DP:GQ:PL 0/1:98,84:182:99:1725,0,2280 1 228444565 . T A 5594.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.392;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.84;SOR=0.800 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5608,582,0 1 228461129 . A G 2670.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;CNN_1D=-12.011;DP=288;ExcessHet=3.0103;FS=4.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-1.450;SOR=0.769 GT:AD:DP:GQ:PL 0/1:159,129:288:99:2678,0,3717 1 228461757 . G A 1086.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;CNN_1D=-1.008;DP=85;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-0.850;SOR=1.028 GT:AD:DP:GQ:PL 0/1:40,45:85:99:1094,0,943 1 228464248 . T G 1575.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.056;CNN_1D=-3.307;DP=141;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=0.475;SOR=0.925 GT:AD:DP:GQ:PL 0/1:74,67:141:99:1583,0,1651 1 228464276 . T C 1826.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;CNN_1D=-4.596;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=-1.461;SOR=0.692 GT:AD:DP:GQ:PL 0/1:77,81:158:99:1834,0,1699 1 228465346 . A G 1438.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;CNN_1D=-3.768;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=0.397;SOR=0.677 GT:AD:DP:GQ:PL 0/1:70,61:131:99:1446,0,1747 1 228465370 . T G 1426.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;CNN_1D=-1.996;DP=119;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-0.789;SOR=0.819 GT:AD:DP:GQ:PL 0/1:60,59:119:99:1434,0,1441 1 228471379 . G C 1448.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;CNN_1D=-4.311;DP=149;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.253;SOR=0.613 GT:AD:DP:GQ:PL 0/1:84,65:149:99:1456,0,2107 1 228480282 . A G 1891.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.741;CNN_1D=-3.447;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=-0.788;SOR=0.719 GT:AD:DP:GQ:PL 0/1:61,85:146:99:1899,0,1441 1 228482028 . G C 3818.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;CNN_1D=-14.384;DP=343;ExcessHet=3.0103;FS=0.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=0.510;SOR=0.728 GT:AD:DP:GQ:PL 0/1:170,173:343:99:3826,0,3878 1 228486404 . C T 1343.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;CNN_1D=-4.067;DP=132;ExcessHet=3.0103;FS=3.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-0.521;SOR=1.014 GT:AD:DP:GQ:PL 0/1:71,61:132:99:1351,0,1630 1 228494696 . G A 1975.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;CNN_1D=-0.282;DP=115;ExcessHet=3.0103;FS=11.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.18;ReadPosRankSum=-1.389;SOR=0.265 GT:AD:DP:GQ:PL 0/1:40,75:115:99:1983,0,817 1 228496014 . G A 1261.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;CNN_1D=-2.429;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-1.031;SOR=0.700 GT:AD:DP:GQ:PL 0/1:65,53:118:99:1269,0,1567 1 228503677 . A G 2067.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;CNN_1D=-3.226;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=0.011;SOR=0.693 GT:AD:DP:GQ:PL 0/1:60,92:152:99:2075,0,1283 1 228504472 . T C 1139.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182;CNN_1D=-1.493;DP=107;ExcessHet=3.0103;FS=6.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=0.408;SOR=0.322 GT:AD:DP:GQ:PL 0/1:54,53:107:99:1147,0,1331 1 228504591 . C A 837.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;CNN_1D=-2.494;DP=112;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=1.069;SOR=0.616 GT:AD:DP:GQ:PL 0/1:72,40:112:99:845,0,1666 1 228504669 . G A 393.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;CNN_1D=0.548;DP=53;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-0.772;SOR=0.373 GT:AD:DP:GQ:PL 0/1:36,17:53:99:401,0,1133 1 228505204 . G A 1166.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;CNN_1D=-1.486;DP=103;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.013;SOR=0.750 GT:AD:DP:GQ:PL 0/1:52,51:103:99:1174,0,1181 1 228505668 . C G 904.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;CNN_1D=-0.827;DP=86;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=-0.981;SOR=0.590 GT:AD:DP:GQ:PL 0/1:48,37:85:99:912,0,1167 1 228505699 . T C 944.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;CNN_1D=-1.610;DP=110;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=0.946;SOR=0.509 GT:AD:DP:GQ:PL 0/1:62,44:106:99:952,0,1504 1 228505739 . G A 1219.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;CNN_1D=-4.787;DP=146;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=1.125;SOR=0.842 GT:AD:DP:GQ:PL 0/1:86,59:145:99:1227,0,1929 1 228506661 . G A 1692.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;CNN_1D=-6.222;DP=183;ExcessHet=3.0103;FS=3.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.846;SOR=0.493 GT:AD:DP:GQ:PL 0/1:107,76:183:99:1700,0,2548 1 228509427 . A G 2249.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.449;CNN_1D=-2.742;DP=150;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=0.289;SOR=0.479 GT:AD:DP:GQ:PL 0/1:64,86:150:99:2257,0,1420 1 228525008 . G A 1537.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;CNN_1D=-5.741;DP=171;ExcessHet=3.0103;FS=3.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.729;SOR=0.970 GT:AD:DP:GQ:PL 0/1:96,75:171:99:1545,0,2174 1 228526011 . C T 1587.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;CNN_1D=-1.468;DP=119;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=-0.067;SOR=0.565 GT:AD:DP:GQ:PL 0/1:53,66:119:99:1595,0,1191 1 228547901 . C T 3092.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;CNN_1D=-8.222;DP=223;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=-0.729;SOR=0.845 GT:AD:DP:GQ:PL 0/1:98,125:223:99:3100,0,2171 1 228559654 . G A 3081.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;CNN_1D=-11.072;DP=287;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=0.356;SOR=0.782 GT:AD:DP:GQ:PL 0/1:150,135:285:99:3089,0,3418 1 228559994 . C T 1967.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;CNN_1D=-2.304;DP=140;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=-0.556;SOR=0.693 GT:AD:DP:GQ:PL 0/1:62,78:140:99:1975,0,1375 1 228560139 . A G 4995.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.042;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.38;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5009,528,0 1 228560700 . T C 1854.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.148;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.27;SOR=0.880 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1868,204,0 1 228612838 . G T 6927.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-4.790;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.62;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,242:242:99:6941,723,0 1 228871693 . C T 715.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;CNN_1D=-1.899;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=0.083;SOR=0.749 GT:AD:DP:GQ:PL 0/1:62,35:97:99:723,0,1490 1 229623292 . G A 877.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;CNN_1D=-2.503;DP=108;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.661;SOR=0.822 GT:AD:DP:GQ:PL 0/1:63,45:108:99:885,0,1387 1 229663064 . GAGGAA G 1295.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.923;CNN_1D=2.164;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.43;ReadPosRankSum=1.745;SOR=0.735 GT:AD:DP:GQ:PL 1/1:2,47:49:98:1309,98,0 1 229730452 . G A 3728.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.213;CNN_1D=1.091;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.46;ReadPosRankSum=-1.251;SOR=1.033 GT:AD:DP:GQ:PL 1/1:4,127:131:99:3742,270,0 1 229738170 . T G 4089.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.201;CNN_1D=0.592;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.59;ReadPosRankSum=1.018;SOR=0.235 GT:AD:DP:GQ:PL 1/1:1,142:143:99:4103,390,0 1 229738236 . G A 4270.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.184;CNN_1D=0.721;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.85;ReadPosRankSum=0.476;SOR=0.412 GT:AD:DP:GQ:PL 1/1:3,145:148:99:4284,355,0 1 229772693 . T G 3360.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.840;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.55;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3374,330,0 1 229790048 . A G 4073.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.893;CNN_1D=-0.273;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.28;ReadPosRankSum=-0.674;SOR=0.780 GT:AD:DP:GQ:PL 1/1:2,142:144:99:4087,382,0 1 230841687 . T C 1983.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.321;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.05;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1997,198,0 1 230845794 . A G 1808.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;CNN_1D=-2.822;DP=151;ExcessHet=3.0103;FS=6.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=0.872;SOR=0.362 GT:AD:DP:GQ:PL 0/1:72,79:151:99:1816,0,1732 1 230845977 . G A 1684.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;CNN_1D=-1.966;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-0.527;SOR=0.740 GT:AD:DP:GQ:PL 0/1:56,68:124:99:1692,0,1411 1 230895340 . C A 1996.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.237;CNN_1D=3.757;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.26;ReadPosRankSum=1.733;SOR=0.281 GT:AD:DP:GQ:PL 1/1:1,75:76:99:2010,193,0 1 230914729 . A C 1856.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.141;CNN_1D=3.255;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.29;ReadPosRankSum=-1.429;SOR=0.389 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1870,167,0 1 230933898 . C T 722.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;CNN_1D=-0.651;DP=71;ExcessHet=3.0103;FS=6.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-0.531;SOR=1.071 GT:AD:DP:GQ:PL 0/1:38,33:71:99:730,0,845 1 231042732 . T A 781.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;CNN_1D=1.846;DP=64;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=0.149;SOR=0.543 GT:AD:DP:GQ:PL 0/1:28,36:64:99:789,0,547 1 231057247 . A T 202.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;CNN_1D=3.044;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=0.609;SOR=0.693 GT:AD:DP:GQ:PL 0/1:9,9:18:99:210,0,233 1 231094050 . GA G 612.66 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;CNN_1D=-0.840;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=0.210;SOR=0.765 GT:AD:DP:GQ:PL 0/1:8,36:44:39:620,0,39 1 231114465 . C G 1160.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.081;CNN_1D=3.115;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.36;ReadPosRankSum=-1.015;SOR=0.892 GT:AD:DP:GQ:PL 1/1:2,42:44:83:1174,83,0 1 231401902 . G A 1714.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.809;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.16;SOR=0.970 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1728,165,0 1 231408091 . A G 857.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.528;CNN_1D=3.895;DP=33;ExcessHet=3.0103;FS=3.724;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.97;ReadPosRankSum=0.788;SOR=0.829 GT:AD:DP:GQ:PL 1/1:1,32:33:60:871,60,0 1 231488524 . C T 2902.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.104;CNN_1D=3.196;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.02;ReadPosRankSum=0.911;SOR=0.820 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2916,250,0 1 231502230 . T TA 115.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;CNN_1D=-1.884;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.091;SOR=0.600 GT:AD:DP:GQ:PL 0/1:59,14:73:99:123,0,1554 1 231830295 . G A 2306.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;CNN_1D=-4.985;DP=183;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=2.253;SOR=0.741 GT:AD:DP:GQ:PL 0/1:88,95:183:99:2314,0,2060 1 231931048 . T C 1176.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;CNN_1D=-0.316;DP=90;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-1.083;SOR=1.109 GT:AD:DP:GQ:PL 0/1:37,53:90:99:1184,0,804 1 232144598 . A T 1806.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;CNN_1D=-4.413;DP=161;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-1.532;SOR=0.595 GT:AD:DP:GQ:PL 0/1:77,84:161:99:1814,0,1814 1 232564297 . T A 802.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;CNN_1D=1.232;DP=71;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=2.389;SOR=0.558 GT:AD:DP:GQ:PL 0/1:34,37:71:99:810,0,782 1 232574921 . T C 888.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.916;CNN_1D=-1.481;DP=91;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-1.988;SOR=0.595 GT:AD:DP:GQ:PL 0/1:54,37:91:99:896,0,1244 1 232581436 . G A 1587.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767;CNN_1D=-3.380;DP=133;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=0.968;SOR=0.575 GT:AD:DP:GQ:PL 0/1:60,73:133:99:1595,0,1414 1 232650750 . A G 5258.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.005;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.89;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5272,546,0 1 232650867 . C T 5548.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.536;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.51;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5562,562,0 1 232941153 . C T 1201.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;CNN_1D=-1.845;DP=107;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=-1.095;SOR=0.880 GT:AD:DP:GQ:PL 0/1:56,50:106:99:1209,0,1434 1 232941390 . C G 1140.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;CNN_1D=-2.704;DP=117;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=0.477;SOR=0.510 GT:AD:DP:GQ:PL 0/1:67,50:117:99:1148,0,1628 1 232942355 . A G 1676.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;CNN_1D=-2.518;DP=127;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=0.719;SOR=0.795 GT:AD:DP:GQ:PL 0/1:63,64:127:99:1684,0,1555 1 233086456 . T C 1304.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;CNN_1D=-2.051;DP=113;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-1.237;SOR=0.622 GT:AD:DP:GQ:PL 0/1:55,57:112:99:1312,0,1266 1 233120192 . G A 1181.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;CNN_1D=-1.167;DP=105;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=0.540;SOR=0.616 GT:AD:DP:GQ:PL 0/1:51,53:104:99:1189,0,1072 1 233122127 . C T 1869.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;CNN_1D=-2.581;DP=133;ExcessHet=3.0103;FS=9.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=0.978;SOR=0.844 GT:AD:DP:GQ:PL 0/1:56,77:133:99:1877,0,1166 1 233134086 . C T 1297.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;CNN_1D=-1.544;DP=107;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=0.235;SOR=0.855 GT:AD:DP:GQ:PL 0/1:49,58:107:99:1305,0,1081 1 233489707 . G T 1569.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;CNN_1D=1.877;DP=58;ExcessHet=3.0103;FS=3.485;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.05;ReadPosRankSum=0.060;SOR=0.621 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1583,164,0 1 233497920 . A C 1175.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;CNN_1D=-1.920;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-0.011;SOR=0.722 GT:AD:DP:GQ:PL 0/1:63,53:116:99:1183,0,1487 1 233515413 . G A 1241.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;CNN_1D=-3.346;DP=139;ExcessHet=3.0103;FS=2.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=1.860;SOR=0.595 GT:AD:DP:GQ:PL 0/1:80,59:139:99:1249,0,1938 1 234041422 . G C 1788.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;CNN_1D=-5.377;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-1.124;SOR=0.694 GT:AD:DP:GQ:PL 0/1:83,83:166:99:1796,0,1820 1 234563060 . T C 507.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;CNN_1D=1.254;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-1.666;SOR=0.770 GT:AD:DP:GQ:PL 0/1:27,26:53:99:515,0,587 1 234582651 . T C 1540.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;CNN_1D=-4.796;DP=156;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.110;SOR=0.758 GT:AD:DP:GQ:PL 0/1:85,71:156:99:1548,0,1920 1 234584231 . C T 856.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;CNN_1D=0.304;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-0.337;SOR=0.634 GT:AD:DP:GQ:PL 0/1:36,37:73:99:864,0,772 1 234593403 . T C 142.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;CNN_1D=2.472;DP=13;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.138;SOR=0.654 GT:AD:DP:GQ:PL 0/1:6,7:13:99:150,0,169 1 234601456 . TA T 74.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;CNN_1D=-2.800;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.657;SOR=0.446 GT:AD:DP:GQ:PL 0/1:12,6:18:82:82,0,195 1 234603386 . G T 1975.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.839;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.43;SOR=1.394 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1989,216,0 1 234744413 . C A 718.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.804;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.92;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,24:24:72:732,72,0 1 234745009 . A G 889.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.607;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.75;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,28:28:84:903,84,0 1 235301496 . CA C 454.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;CNN_1D=-0.504;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=2.352;SOR=0.602 GT:AD:DP:GQ:PL 0/1:14,26:40:99:462,0,225 1 235324298 . T C 1500.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.541;CNN_1D=-3.046;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.017;SOR=0.728 GT:AD:DP:GQ:PL 0/1:73,64:137:99:1508,0,1578 1 235324545 . T A 1147.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;CNN_1D=-1.211;DP=103;ExcessHet=3.0103;FS=2.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=0.917;SOR=0.465 GT:AD:DP:GQ:PL 0/1:52,51:103:99:1155,0,1116 1 235345346 . C T 1087.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;CNN_1D=-4.455;DP=130;ExcessHet=3.0103;FS=3.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-0.388;SOR=0.618 GT:AD:DP:GQ:PL 0/1:82,48:130:99:1095,0,2202 1 235345877 . A G 1609.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;CNN_1D=0.489;DP=97;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=-0.023;SOR=0.453 GT:AD:DP:GQ:PL 0/1:34,63:97:99:1617,0,730 1 235383188 . A G 2245.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.747;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.73;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2259,251,0 1 235392546 . T C 2002.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.552;CNN_1D=2.438;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.03;ReadPosRankSum=-0.015;SOR=0.976 GT:AD:DP:GQ:PL 1/1:2,78:80:99:2016,189,0 1 235394510 . TA T 259.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;CNN_1D=0.863;DP=24;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.062;SOR=0.330 GT:AD:DP:GQ:PL 0/1:11,12:23:99:267,0,334 1 235647631 . G T 992.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;CNN_1D=1.985;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-1.288;SOR=0.713 GT:AD:DP:GQ:PL 0/1:23,41:64:99:1000,0,525 1 235652513 . T C 1263.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;CNN_1D=-0.940;DP=110;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-1.270;SOR=0.600 GT:AD:DP:GQ:PL 0/1:52,58:110:99:1271,0,1092 1 235715523 . A G 1259.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;CNN_1D=-0.683;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-1.030;SOR=0.770 GT:AD:DP:GQ:PL 0/1:45,54:99:99:1267,0,963 1 235826382 . TA T 1687.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.294;CNN_1D=1.165;DP=95;ExcessHet=3.0103;FS=2.537;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=21.63;ReadPosRankSum=0.214;SOR=1.092 GT:AD:DP:GQ:PL 1/1:6,72:78:99:1701,122,0 1 235940450 . C T 2329.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;CNN_1D=3.217;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.08;ReadPosRankSum=0.760;SOR=0.897 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2343,208,0 1 235945294 . T C 1873.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.120;CNN_1D=3.665;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=1.854;SOR=0.811 GT:AD:DP:GQ:PL 1/1:4,70:74:99:1887,123,0 1 235972435 . T C 3685.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.773;CNN_1D=2.309;DP=126;ExcessHet=3.0103;FS=9.348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.25;ReadPosRankSum=0.864;SOR=0.212 GT:AD:DP:GQ:PL 1/1:3,123:126:99:3699,268,0 1 235972867 . T C 3836.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.518;CNN_1D=2.529;DP=128;ExcessHet=3.0103;FS=3.219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.97;ReadPosRankSum=1.381;SOR=0.401 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3850,345,0 1 236175327 . C A 1070.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;CNN_1D=-2.631;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-0.345;SOR=0.738 GT:AD:DP:GQ:PL 0/1:62,50:112:99:1078,0,1346 1 236175339 . T C 940.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;CNN_1D=-0.856;DP=94;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-1.607;SOR=0.600 GT:AD:DP:GQ:PL 0/1:50,43:93:99:948,0,1075 1 236175351 . A G 986.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;CNN_1D=1.077;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=1.714;SOR=0.622 GT:AD:DP:GQ:PL 0/1:34,44:78:99:994,0,725 1 236180580 . C G 740.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;CNN_1D=2.277;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=0.323;SOR=0.671 GT:AD:DP:GQ:PL 0/1:24,33:57:99:748,0,475 1 236187365 . T C 1675.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;CNN_1D=-3.345;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=1.663;SOR=0.646 GT:AD:DP:GQ:PL 0/1:60,74:134:99:1683,0,1325 1 236208773 . C T 1073.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;CNN_1D=1.091;DP=74;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=0.477;SOR=0.563 GT:AD:DP:GQ:PL 0/1:31,43:74:99:1081,0,744 1 236413230 . T A 1326.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.723;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.52;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1340,150,0 1 236444973 . C T 528.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;CNN_1D=0.741;DP=61;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-0.954;SOR=0.678 GT:AD:DP:GQ:PL 0/1:36,25:61:99:536,0,905 1 236557771 . G A 2629.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.701;CNN_1D=2.405;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.56;ReadPosRankSum=-0.062;SOR=0.892 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2643,247,0 1 236645670 . C T 3693.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.155;CNN_1D=0.289;DP=137;ExcessHet=3.0103;FS=2.294;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.96;ReadPosRankSum=-1.986;SOR=0.671 GT:AD:DP:GQ:PL 1/1:3,134:137:99:3707,327,0 1 236721731 . T C 4318.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.155;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.04;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4332,462,0 1 236729956 . T C 870.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;CNN_1D=-0.706;DP=90;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.190;SOR=0.579 GT:AD:DP:GQ:PL 0/1:48,42:90:99:878,0,1105 1 236882303 . T C 3306.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.095;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.32;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3320,362,0 1 236883421 . C T 2013.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.345;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.96;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2027,216,0 1 236899899 . TC T 1810.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;CNN_1D=-7.540;DP=169;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-2.078;SOR=0.750 GT:AD:DP:GQ:PL 0/1:94,70:164:99:1818,0,2564 1 236902594 . C G 2303.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.979;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.99;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2317,216,0 1 236925844 . G A 1204.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;CNN_1D=-0.315;DP=98;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=1.921;SOR=0.777 GT:AD:DP:GQ:PL 0/1:47,51:98:99:1212,0,969 1 237048500 . A G 2603.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.110;CNN_1D=2.884;DP=92;ExcessHet=3.0103;FS=3.908;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.60;ReadPosRankSum=-0.286;SOR=0.900 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2617,233,0 1 237058828 . C T 2655.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.837;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.86;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2669,275,0 1 237060945 . CT C 819.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;CNN_1D=-0.363;DP=65;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-1.151;SOR=0.495 GT:AD:DP:GQ:PL 0/1:16,43:59:99:827,0,194 1 237167594 . T A 1943.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;CNN_1D=-4.992;DP=179;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=1.108;SOR=0.672 GT:AD:DP:GQ:PL 0/1:88,91:179:99:1951,0,2097 1 237617757 . C T 3985.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.737;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.87;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3999,428,0 1 237711797 . A G 3808.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.706;CNN_1D=0.474;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.01;ReadPosRankSum=-0.639;SOR=0.247 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3822,386,0 1 237801770 . T C 2264.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.158;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.30;SOR=1.031 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2278,240,0 1 237863718 . T G 1409.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.525;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.18;SOR=1.157 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1423,149,0 1 237881770 . C T 1661.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.151;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.68;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1675,180,0 1 237890437 . C T 2494.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.117;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.34;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2508,267,0 1 237957161 . A G 2030.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.095;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.85;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2044,204,0 1 240255568 . GGGC G 1113.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.085;CNN_1D=-0.379;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=0.163;SOR=0.818 GT:AD:DP:GQ:PL 0/1:42,30:72:99:1121,0,1682 1 240256822 . C A 1403.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.119;CNN_1D=-3.027;DP=120;ExcessHet=3.0103;FS=2.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-0.150;SOR=0.963 GT:AD:DP:GQ:PL 0/1:63,57:120:99:1411,0,1414 1 240370629 . C G 2559.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;CNN_1D=-4.483;DP=177;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=0.360;SOR=0.673 GT:AD:DP:GQ:PL 0/1:70,106:176:99:2567,0,1727 1 240370702 . A G 1750.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;CNN_1D=-6.105;DP=184;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-0.740;SOR=0.787 GT:AD:DP:GQ:PL 0/1:103,80:183:99:1758,0,2494 1 240371106 . C T 601.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;CNN_1D=-4.367;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.05;MQRankSum=-0.487;QD=7.71;ReadPosRankSum=-1.255;SOR=0.798 GT:AD:DP:GQ:PL 0/1:45,33:78:99:609,0,1020 1 240371328 . G A 186.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;CNN_1D=-6.036;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.23;MQRankSum=-2.788;QD=6.22;ReadPosRankSum=0.568;SOR=0.627 GT:AD:DP:GQ:PL 0/1:21,9:30:99:194,0,489 1 240371554 . A G 1161.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.468;CNN_1D=0.092;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.46;MQRankSum=-0.942;QD=25.80;ReadPosRankSum=-0.193;SOR=1.445 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1175,108,0 1 240975213 . T C 837.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;CNN_1D=0.186;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-0.175;SOR=0.786 GT:AD:DP:GQ:PL 0/1:47,36:83:99:845,0,1102 1 241755348 . C T 3665.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.829;CNN_1D=0.753;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.35;ReadPosRankSum=0.523;SOR=0.854 GT:AD:DP:GQ:PL 1/1:2,132:134:99:3679,352,0 1 241798443 . G A 899.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;CNN_1D=-2.520;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-0.542;SOR=0.709 GT:AD:DP:GQ:PL 0/1:67,43:110:99:907,0,1669 1 241798631 . C T 2912.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.953;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.33;SOR=0.870 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2926,288,0 1 242030151 . A G 1235.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;CNN_1D=-0.353;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=0.897;SOR=0.631 GT:AD:DP:GQ:PL 0/1:43,54:97:99:1243,0,1017 1 242035438 . G A 1044.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;CNN_1D=-1.811;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=0.003;SOR=0.733 GT:AD:DP:GQ:PL 0/1:58,49:107:99:1052,0,1301 1 242042301 . G A 1665.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;CNN_1D=-5.085;DP=163;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=1.298;SOR=0.807 GT:AD:DP:GQ:PL 0/1:90,72:162:99:1673,0,2224 1 242042545 . A G 1966.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;CNN_1D=-4.656;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-1.655;SOR=0.741 GT:AD:DP:GQ:PL 0/1:85,85:170:99:1974,0,1933 1 242045275 . C T 1240.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.663;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.18;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1254,132,0 1 242121061 . C T 1129.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;CNN_1D=2.294;DP=65;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.65;ReadPosRankSum=-0.384;SOR=0.520 GT:AD:DP:GQ:PL 0/1:34,30:64:99:1137,0,1837 1 242121540 . G A 1522.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;CNN_1D=-1.298;DP=113;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=0.768;SOR=0.577 GT:AD:DP:GQ:PL 0/1:54,59:113:99:1530,0,1193 1 242121796 . G T 1294.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.462;CNN_1D=0.502;DP=91;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-0.376;SOR=0.726 GT:AD:DP:GQ:PL 0/1:37,54:91:99:1302,0,950 1 243328887 . G T 332.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;CNN_1D=-15.120;DP=209;ExcessHet=3.0103;FS=23.487;MLEAC=1;MLEAF=0.500;MQ=47.37;MQRankSum=-3.260;QD=1.59;ReadPosRankSum=-1.840;SOR=2.505 GT:AD:DP:GQ:PL 0/1:180,29:209:99:340,0,4650 1 243329049 . G A 1882.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923;CNN_1D=-14.861;DP=261;ExcessHet=3.0103;FS=4.358;MLEAC=1;MLEAF=0.500;MQ=54.41;MQRankSum=-6.476;QD=7.24;ReadPosRankSum=1.909;SOR=0.607 GT:AD:DP:GQ:PL 0/1:167,93:260:99:1890,0,4281 1 243329075 . T C 1301.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;CNN_1D=-15.439;DP=249;ExcessHet=3.0103;FS=3.149;MLEAC=1;MLEAF=0.500;MQ=54.17;MQRankSum=-6.112;QD=5.23;ReadPosRankSum=0.224;SOR=0.563 GT:AD:DP:GQ:PL 0/1:178,71:249:99:1309,0,4497 1 243329211 . G T 44.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.621;CNN_1D=-16.080;DP=213;ExcessHet=3.0103;FS=15.646;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-10.677;QD=0.21;ReadPosRankSum=1.432;SOR=2.374 GT:AD:DP:GQ:PL 0/1:194,19:213:52:52,0,5057 1 243354791 . C T 609.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=0.151;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.72;QD=30.45;SOR=1.721 GT:AD:DP:GQ:PL 1/1:0,20:20:60:623,60,0 1 243579112 . G A 4356.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.561;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.23;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4370,479,0 1 244583585 . T C 330.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;CNN_1D=1.326;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=-1.002;SOR=0.616 GT:AD:DP:GQ:PL 0/1:23,16:39:99:338,0,535 1 244724092 . G A 1580.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;CNN_1D=0.544;DP=103;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=1.004;SOR=0.524 GT:AD:DP:GQ:PL 0/1:37,66:103:99:1588,0,730 1 244735858 . A G 1593.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;CNN_1D=-3.368;DP=137;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-0.379;SOR=0.455 GT:AD:DP:GQ:PL 0/1:70,66:136:99:1601,0,1800 1 245027349 . C T 955.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;CNN_1D=-0.861;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=-1.783;SOR=0.786 GT:AD:DP:GQ:PL 0/1:36,45:81:99:963,0,832 1 245775265 . C T 1312.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;CNN_1D=-5.283;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=1.049;SOR=0.735 GT:AD:DP:GQ:PL 0/1:91,63:154:99:1320,0,2007 1 245849969 . C T 3123.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;CNN_1D=-13.248;DP=302;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.444;SOR=0.810 GT:AD:DP:GQ:PL 0/1:173,129:302:99:3131,0,4116 1 245851304 . A G 4747.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.054;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.43;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4761,501,0 1 246021941 . T C 2510.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.426;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.99;SOR=1.119 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2524,278,0 1 246670481 . C G 1221.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;CNN_1D=-3.426;DP=113;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.550;SOR=0.932 GT:AD:DP:GQ:PL 0/1:61,52:113:99:1229,0,1322 1 246714587 . G A 113.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;CNN_1D=0.077;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=2.062;SOR=0.836 GT:AD:DP:GQ:PL 0/1:39,9:48:99:121,0,837 1 246720798 . G A 1787.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.939;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.73;QD=27.08;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1801,198,0 1 246755124 . T C 2382.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;CNN_1D=-5.823;DP=189;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-0.341;SOR=0.883 GT:AD:DP:GQ:PL 0/1:80,109:189:99:2390,0,1862 1 247006051 . G C 532.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;CNN_1D=1.355;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=-0.232;SOR=0.776 GT:AD:DP:GQ:PL 0/1:27,26:53:99:540,0,589 1 247012943 . G A 662.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;CNN_1D=1.483;DP=63;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-0.092;SOR=0.963 GT:AD:DP:GQ:PL 0/1:34,28:62:99:670,0,769 1 247021085 . G C 723.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;CNN_1D=1.197;DP=59;ExcessHet=3.0103;FS=5.293;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-1.286;QD=12.26;ReadPosRankSum=0.822;SOR=0.494 GT:AD:DP:GQ:PL 0/1:27,32:59:99:731,0,588 1 247048834 . T C 1354.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.987;CNN_1D=1.808;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQRankSum=-0.907;QD=28.21;ReadPosRankSum=-0.506;SOR=0.289 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1368,104,0 1 247150631 . T C 151.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;CNN_1D=1.316;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-1.240;SOR=0.773 GT:AD:DP:GQ:PL 0/1:17,9:26:99:159,0,378 1 247150740 . T C 1285.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.704;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.56;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1299,135,0 1 247151557 . A G 1441.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.376;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.66;SOR=1.378 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1455,141,0 1 247162658 . C T 2101.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.601;CNN_1D=3.351;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.01;ReadPosRankSum=0.901;SOR=0.295 GT:AD:DP:GQ:PL 1/1:1,74:75:99:2115,185,0 1 247322298 . G T 685.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;CNN_1D=0.553;DP=66;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.173;SOR=0.836 GT:AD:DP:GQ:PL 0/1:34,32:66:99:693,0,868 1 247587477 . G A 2267.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;CNN_1D=-2.220;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=-0.122;SOR=0.671 GT:AD:DP:GQ:PL 0/1:58,88:146:99:2275,0,1248 1 247587531 . A G 1936.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;CNN_1D=-2.150;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=2.024;SOR=0.726 GT:AD:DP:GQ:PL 0/1:56,76:132:99:1944,0,1241 1 247588053 . C T 1329.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.311;CNN_1D=-3.658;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-0.045;SOR=0.671 GT:AD:DP:GQ:PL 0/1:70,59:129:99:1337,0,1822 1 247614386 . T C 1345.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;CNN_1D=-2.949;DP=119;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=0.356;SOR=0.892 GT:AD:DP:GQ:PL 0/1:61,58:119:99:1353,0,1370 1 247614407 . G A 1523.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;CNN_1D=-3.628;DP=144;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.126;SOR=0.832 GT:AD:DP:GQ:PL 0/1:75,69:144:99:1531,0,1729 1 247614553 . C T 1337.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.935;CNN_1D=-4.207;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=0.882;SOR=0.641 GT:AD:DP:GQ:PL 0/1:84,58:142:99:1345,0,1886 1 247614657 . A G 1024.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;CNN_1D=-2.648;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-1.460;SOR=0.697 GT:AD:DP:GQ:PL 0/1:65,45:110:99:1032,0,1599 1 247614693 . C T 1626.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;CNN_1D=-0.884;DP=109;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=0.129;SOR=0.814 GT:AD:DP:GQ:PL 0/1:42,66:108:99:1634,0,980 1 247614925 . G A 1349.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;CNN_1D=-3.608;DP=141;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=0.161;SOR=0.758 GT:AD:DP:GQ:PL 0/1:83,58:141:99:1357,0,2001 1 247695612 . G A 6311.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.803;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.77;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6325,635,0 1 247695756 . T C 4562.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.415;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.06;SOR=1.060 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4576,471,0 1 247751731 . C G 1340.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;CNN_1D=1.186;DP=84;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=0.005;SOR=0.450 GT:AD:DP:GQ:PL 0/1:32,52:84:99:1348,0,829 1 247752019 . G C 4647.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.690;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.78;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4661,452,0 1 247752367 . A G 1283.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;CNN_1D=-1.684;DP=120;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=0.520;SOR=0.767 GT:AD:DP:GQ:PL 0/1:63,57:120:99:1291,0,1496 1 247835674 . G A 1424.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;CNN_1D=-3.395;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-1.082;SOR=0.693 GT:AD:DP:GQ:PL 0/1:82,60:142:99:1432,0,1999 1 247835908 . T A 2443.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;CNN_1D=-6.346;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-0.658;SOR=0.657 GT:AD:DP:GQ:PL 0/1:90,105:195:99:2451,0,2020 1 247836008 . G A 2073.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.392;CNN_1D=-3.745;DP=149;ExcessHet=3.0103;FS=2.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=0.200;SOR=0.948 GT:AD:DP:GQ:PL 0/1:63,86:149:99:2081,0,1535 1 247836207 . T A 1592.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;CNN_1D=-1.732;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=-0.254;SOR=0.697 GT:AD:DP:GQ:PL 0/1:46,67:113:99:1600,0,1084 1 247921100 . T G 4592.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.069;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.82;SOR=0.920 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4606,462,0 1 247921352 . C T 3088.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.890;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.57;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3102,303,0 1 247921717 . C A 1229.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.688;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.51;SOR=1.236 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1243,117,0 1 247978319 . A G 3797.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.540;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.90;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3811,380,0 1 247978541 . AAGG A 5426.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.429;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=23.58;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,122:122:99:5440,368,0 1 247978996 . A G 2328.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.967;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.23;SOR=1.463 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2342,231,0 1 248004614 . G A 4998.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.948;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.40;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5012,510,0 1 248004687 . C G 4630.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.077;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.46;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4644,456,0 1 248004775 . C T 4373.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.038;CNN_1D=-0.579;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.21;ReadPosRankSum=1.800;SOR=0.706 GT:AD:DP:GQ:PL 1/1:2,153:155:99:4387,415,0 1 248004848 . G C 4534.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;CNN_1D=0.160;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.03;ReadPosRankSum=-2.328;SOR=0.706 GT:AD:DP:GQ:PL 1/1:2,149:151:99:4548,404,0 1 248004877 . C T 6679.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.895;CNN_1D=0.438;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=32.16;ReadPosRankSum=-0.682;SOR=0.845 GT:AD:DP:GQ:PL 1/1:2,153:155:99:6693,374,0 1 248004884 . T C 6802.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;CNN_1D=0.532;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.48;ReadPosRankSum=-0.244;SOR=0.719 GT:AD:DP:GQ:PL 1/1:2,154:156:99:6816,389,0 1 248020556 . G C 2703.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.418;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.37;SOR=1.408 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2717,267,0 1 248028219 . G A 1070.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;CNN_1D=0.265;DP=83;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=1.452;SOR=0.892 GT:AD:DP:GQ:PL 0/1:39,44:83:99:1078,0,900 1 248039294 . G A 1824.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.815;CNN_1D=-2.936;DP=159;ExcessHet=3.0103;FS=5.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=0.939;SOR=0.392 GT:AD:DP:GQ:PL 0/1:77,82:159:99:1832,0,1915 1 248039713 . A G 2038.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;CNN_1D=-5.505;DP=178;ExcessHet=3.0103;FS=4.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=-0.127;SOR=1.041 GT:AD:DP:GQ:PL 0/1:92,86:178:99:2046,0,2141 1 248058879 . A T 1696.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.490;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.29;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1710,168,0 1 248059423 . C T 1434.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;CNN_1D=-3.847;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=2.402;SOR=0.703 GT:AD:DP:GQ:PL 0/1:81,59:140:99:1442,0,1876 1 248059456 . G A 1657.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;CNN_1D=-2.733;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=0.437;SOR=0.702 GT:AD:DP:GQ:PL 0/1:75,67:142:99:1665,0,1756 1 248059476 . A C 1573.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;CNN_1D=-4.287;DP=148;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-0.611;SOR=0.756 GT:AD:DP:GQ:PL 0/1:78,70:148:99:1581,0,1912 1 248059703 . T A 2631.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;CNN_1D=-0.979;DP=136;ExcessHet=3.0103;FS=4.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.35;ReadPosRankSum=-1.389;SOR=0.856 GT:AD:DP:GQ:PL 0/1:66,70:136:99:2639,0,3294 1 248059712 . T C 2715.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;CNN_1D=-1.194;DP=144;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.86;ReadPosRankSum=-0.162;SOR=0.784 GT:AD:DP:GQ:PL 0/1:72,72:144:99:2723,0,3424 1 248084434 . G A 1063.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;CNN_1D=-2.287;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.09;MQRankSum=2.540;QD=9.25;ReadPosRankSum=1.058;SOR=0.636 GT:AD:DP:GQ:PL 0/1:66,49:115:99:1071,0,1681 1 248084464 . T C 2799.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.268;CNN_1D=-2.642;DP=124;ExcessHet=3.0103;FS=5.261;MLEAC=1;MLEAF=0.500;MQ=46.34;MQRankSum=-0.933;QD=22.58;ReadPosRankSum=6.132;SOR=1.280 GT:AD:DP:GQ:PL 0/1:32,92:124:99:2807,0,500 1 248084471 . A G 1165.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.087;CNN_1D=-4.778;DP=125;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=45.57;MQRankSum=2.350;QD=9.32;ReadPosRankSum=-0.555;SOR=0.779 GT:AD:DP:GQ:PL 0/1:91,34:125:99:1173,0,3714 1 248084473 . C A 1165.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;CNN_1D=-5.338;DP=125;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=45.40;MQRankSum=2.009;QD=9.32;ReadPosRankSum=-1.063;SOR=0.914 GT:AD:DP:GQ:PL 0/1:91,34:125:99:1173,0,3714 1 248084511 . T C 2917.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.791;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.18;QD=30.39;SOR=1.659 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2931,288,0 1 248084579 . G A 185.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.761;CNN_1D=-2.251;DP=51;ExcessHet=3.0103;FS=15.642;MLEAC=1;MLEAF=0.500;MQ=41.42;MQRankSum=1.467;QD=3.64;ReadPosRankSum=-1.976;SOR=0.047 GT:AD:DP:GQ:PL 0/1:37,14:51:99:193,0,1125 1 248084609 . C T 449.02 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=0.579;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=37.21;QD=27.62;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,12:12:36:463,36,0 1 248084625 . C G 145.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;CNN_1D=-2.153;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=37.19;MQRankSum=1.085;QD=16.18;ReadPosRankSum=-0.936;SOR=2.712 GT:AD:DP:GQ:PL 0/1:5,4:9:99:153,0,186 1 248084627 . C T 145.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;CNN_1D=-2.047;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=36.83;MQRankSum=1.242;QD=18.20;ReadPosRankSum=-1.718;SOR=3.258 GT:AD:DP:GQ:PL 0/1:4,4:8:99:153,0,186 1 248084631 . A C 148.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;CNN_1D=-2.053;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=36.83;MQRankSum=1.242;QD=18.58;ReadPosRankSum=-1.718;SOR=3.258 GT:AD:DP:GQ:PL 0/1:4,4:8:99:156,0,156 1 248084825 . C T 518.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;CNN_1D=-7.637;DP=87;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=41.72;MQRankSum=-2.549;QD=5.96;ReadPosRankSum=-4.208;SOR=0.585 GT:AD:DP:GQ:PL 0/1:56,31:87:99:526,0,1306 1 248084980 . G T 242.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.255;CNN_1D=-5.942;DP=57;ExcessHet=3.0103;FS=14.292;MLEAC=1;MLEAF=0.500;MQ=36.93;MQRankSum=1.372;QD=4.26;ReadPosRankSum=1.113;SOR=3.121 GT:AD:DP:GQ:PL 0/1:46,11:57:99:250,0,1249 1 248085011 . C G 1726.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.237;CNN_1D=1.621;DP=82;ExcessHet=3.0103;FS=5.270;MLEAC=1;MLEAF=0.500;MQ=42.61;MQRankSum=2.748;QD=21.06;ReadPosRankSum=-0.286;SOR=0.294 GT:AD:DP:GQ:PL 0/1:20,62:82:99:1734,0,511 1 248085108 . C T 822.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;CNN_1D=-10.094;DP=155;ExcessHet=3.0103;FS=6.722;MLEAC=1;MLEAF=0.500;MQ=53.19;MQRankSum=-3.521;QD=5.31;ReadPosRankSum=-1.393;SOR=1.030 GT:AD:DP:GQ:PL 0/1:111,44:155:99:830,0,2799 1 248085124 . G A 2598.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;CNN_1D=-0.579;DP=153;ExcessHet=3.0103;FS=7.799;MLEAC=1;MLEAF=0.500;MQ=54.17;MQRankSum=3.627;QD=16.98;ReadPosRankSum=0.785;SOR=0.655 GT:AD:DP:GQ:PL 0/1:48,105:153:99:2606,0,896 1 248112627 . T C 1480.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;CNN_1D=-7.749;DP=179;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.500;MQ=54.88;MQRankSum=0.090;QD=8.32;ReadPosRankSum=-0.503;SOR=0.914 GT:AD:DP:GQ:PL 0/1:109,69:178:99:1488,0,2590 1 248112745 . G T 4779.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.674;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=46.94;QD=31.24;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4793,459,0 1 248112762 . T C 6885.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.008;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.95;QD=26.35;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,150:150:99:6899,470,0 1 248112763 . G A 6934.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.372;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.15;QD=27.01;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,147:147:99:6948,476,0 1 248112771 . C T 6897.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.608;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.70;QD=32.24;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,158:158:99:6911,478,0 1 248112809 . A G 5344.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.497;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.36;QD=29.53;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5358,543,0 1 248112836 . A G 5210.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.824;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.11;QD=28.94;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5224,539,0 1 248112915 . A G 2495.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;CNN_1D=-6.856;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.945;QD=13.64;ReadPosRankSum=-0.322;SOR=0.662 GT:AD:DP:GQ:PL 0/1:78,105:183:99:2503,0,1815 1 248113026 . T A 4353.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.969;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.44;QD=27.90;SOR=1.045 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4367,465,0 1 248113040 . A G 4225.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.919;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.14;QD=29.14;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4239,435,0 1 248128929 . G A 2362.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.897;CNN_1D=-3.081;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=0.860;SOR=0.735 GT:AD:DP:GQ:PL 0/1:60,92:152:99:2370,0,1498 1 248129240 . G A 1389.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;CNN_1D=-3.586;DP=133;ExcessHet=3.0103;FS=4.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.807;SOR=0.824 GT:AD:DP:GQ:PL 0/1:72,60:132:99:1397,0,1759 1 248129304 . T C 1786.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;CNN_1D=-2.461;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=0.939;SOR=0.649 GT:AD:DP:GQ:PL 0/1:62,73:135:99:1794,0,1476 1 248343543 . C T 6248.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.192;CNN_1D=-4.461;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQRankSum=-0.556;QD=28.14;ReadPosRankSum=1.210;SOR=0.274 GT:AD:DP:GQ:PL 1/1:1,221:222:99:6262,626,0 1 248343945 . C G 5389.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.390;CNN_1D=-3.325;DP=176;ExcessHet=3.0103;FS=3.110;MLEAC=2;MLEAF=1.00;MQ=52.00;MQRankSum=-1.070;QD=30.62;ReadPosRankSum=0.246;SOR=0.315 GT:AD:DP:GQ:PL 1/1:1,175:176:99:5403,487,0 1 248343990 . T C 5232.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.097;CNN_1D=-4.243;DP=187;ExcessHet=3.0103;FS=2.178;MLEAC=2;MLEAF=1.00;MQ=52.50;MQRankSum=-1.779;QD=27.98;ReadPosRankSum=-0.113;SOR=0.522 GT:AD:DP:GQ:PL 1/1:3,184:187:99:5246,472,0 1 248366702 . G A 4918.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.419;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.85;QD=30.55;SOR=1.017 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4932,482,0 1 248402758 . C T 5551.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.861;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.68;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5565,560,0 1 248436611 . G A 6747.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-5.324;CNN_1D=-1.415;DP=248;ExcessHet=3.0103;FS=16.441;MLEAC=2;MLEAF=1.00;MQ=53.92;MQRankSum=4.899;QD=27.21;ReadPosRankSum=2.032;SOR=0.023 GT:AD:DP:GQ:PL 1/1:8,240:248:99:6761,488,0 1 248436616 . A G 11284.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-7.174;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.11;QD=27.78;SOR=1.170 GT:AD:DP:GQ:PL 1/1:0,257:257:99:11298,782,0 1 248436805 . T G 12220.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.386;CNN_1D=-15.568;DP=441;ExcessHet=3.0103;FS=0.915;MLEAC=2;MLEAF=1.00;MQ=46.18;MQRankSum=2.539;QD=27.71;ReadPosRankSum=-1.725;SOR=0.663 GT:AD:DP:GQ:PL 1/1:44,397:441:99:12234,227,0 1 248436809 . G A 2137.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-3.392;CNN_1D=-16.118;DP=445;ExcessHet=3.0103;FS=5.878;MLEAC=1;MLEAF=0.500;MQ=46.08;MQRankSum=-5.354;QD=4.80;ReadPosRankSum=-0.212;SOR=1.294 GT:AD:DP:GQ:PL 0/1:368,77:445:99:2145,0,15949 1 248436811 . G C 2137.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;CNN_1D=-16.118;DP=446;ExcessHet=3.0103;FS=5.887;MLEAC=1;MLEAF=0.500;MQ=46.05;MQRankSum=-5.359;QD=4.79;ReadPosRankSum=-0.570;SOR=1.318 GT:AD:DP:GQ:PL 0/1:368,78:446:99:2145,0,15949 1 248457979 . C A 3857.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.326;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.13;SOR=1.092 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3871,384,0 1 248458571 . T A 2999.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;CNN_1D=-0.485;DP=94;ExcessHet=3.0103;FS=2.377;MLEAC=2;MLEAF=1.00;MQ=34.09;MQRankSum=-0.598;QD=31.90;ReadPosRankSum=1.162;SOR=0.788 GT:AD:DP:GQ:PL 1/1:3,91:94:99:3013,181,0 1 248458676 . T C 3785.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.406;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.84;QD=30.77;SOR=1.323 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3799,369,0 1 248458689 . A G 4532.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.118;CNN_1D=-1.874;DP=145;ExcessHet=3.0103;FS=3.552;MLEAC=2;MLEAF=1.00;MQ=51.01;MQRankSum=-0.951;QD=31.26;ReadPosRankSum=1.183;SOR=0.637 GT:AD:DP:GQ:PL 1/1:1,144:145:99:4546,397,0 1 248458717 . C G 5110.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.880;CNN_1D=-2.684;DP=175;ExcessHet=3.0103;FS=3.035;MLEAC=2;MLEAF=1.00;MQ=53.89;MQRankSum=-0.748;QD=29.20;ReadPosRankSum=0.356;SOR=0.260 GT:AD:DP:GQ:PL 1/1:1,174:175:99:5124,486,0 1 248487300 . C T 5049.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.170;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.57;QD=29.53;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5063,513,0 1 248487338 . C A 5547.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.590;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.60;QD=30.48;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5561,546,0 1 248487638 . A G 5495.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.598;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.52;QD=29.39;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5509,560,0 1 248487768 . A G 4975.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.523;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.89;QD=28.11;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4989,530,0 1 248512094 . C T 3494.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.218;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.12;SOR=1.266 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3508,360,0 1 248512637 . C T 4005.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.244;CNN_1D=0.353;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.81;ReadPosRankSum=1.112;SOR=0.540 GT:AD:DP:GQ:PL 1/1:3,141:144:99:4019,341,0 1 248512749 . G A 3442.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.874;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.42;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3456,351,0 1 248512767 . G T 3021.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.554;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.91;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3035,303,0 1 248513023 . G A 1003.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.091;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.34;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,32:32:96:1017,96,0 1 248525135 . G A 892.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.258;CNN_1D=-16.115;DP=307;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-8.736;QD=2.91;ReadPosRankSum=-1.868;SOR=0.753 GT:AD:DP:GQ:PL 0/1:267,40:307:99:900,0,13538 1 248525138 . C T 889.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980;CNN_1D=-16.117;DP=309;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-9.043;QD=2.88;ReadPosRankSum=-1.811;SOR=0.798 GT:AD:DP:GQ:PL 0/1:266,43:309:99:897,0,13569 1 248525638 . CA C 9516.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;CNN_1D=-6.935;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQRankSum=-0.046;QD=28.09;ReadPosRankSum=0.031;SOR=0.817 GT:AD:DP:GQ:PL 1/1:2,238:240:99:9530,633,0 1 248550976 . T G 7122.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.093;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.95;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7136,735,0 1 248569369 . A G 4806.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.600;CNN_1D=-1.042;DP=176;ExcessHet=3.0103;FS=2.822;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.46;ReadPosRankSum=-1.671;SOR=0.233 GT:AD:DP:GQ:PL 1/1:2,173:175:99:4820,447,0 1 248616401 . G A 4648.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.836;CNN_1D=-16.118;DP=614;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=52.50;MQRankSum=-22.467;QD=7.58;ReadPosRankSum=2.557;SOR=0.755 GT:AD:DP:GQ:PL 0/1:466,147:613:99:4656,0,24909 1 248616408 . C T 4635.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.888;CNN_1D=-16.118;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.46;MQRankSum=-22.328;QD=7.46;ReadPosRankSum=3.106;SOR=0.747 GT:AD:DP:GQ:PL 0/1:474,147:621:99:4643,0,24946 1 248637046 . G A 1169.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;CNN_1D=-13.724;DP=253;ExcessHet=3.0103;FS=4.863;MLEAC=1;MLEAF=0.500;MQ=39.47;MQRankSum=0.745;QD=4.62;ReadPosRankSum=-1.048;SOR=1.020 GT:AD:DP:GQ:PL 0/1:182,71:253:99:1177,0,4535 1 248637065 . A G 889.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.907;CNN_1D=-13.637;DP=212;ExcessHet=3.0103;FS=17.935;MLEAC=1;MLEAF=0.500;MQ=38.23;MQRankSum=0.534;QD=4.20;ReadPosRankSum=-0.675;SOR=1.769 GT:AD:DP:GQ:PL 0/1:160,52:212:99:897,0,3926 1 248637115 . T C 346.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;CNN_1D=-11.122;DP=155;ExcessHet=3.0103;FS=13.142;MLEAC=1;MLEAF=0.500;MQ=39.15;MQRankSum=-2.323;QD=2.24;ReadPosRankSum=-0.117;SOR=2.005 GT:AD:DP:GQ:PL 0/1:129,26:155:99:354,0,3505 1 248637362 . C T 1121.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;CNN_1D=-16.118;DP=412;ExcessHet=3.0103;FS=4.237;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-6.250;QD=2.73;ReadPosRankSum=1.096;SOR=1.099 GT:AD:DP:GQ:PL 0/1:326,85:411:99:1129,0,8070 1 248637543 . C T 1513.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.414;CNN_1D=-16.117;DP=387;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=45.30;MQRankSum=-2.425;QD=3.91;ReadPosRankSum=-0.329;SOR=0.634 GT:AD:DP:GQ:PL 0/1:297,90:387:99:1521,0,7152 1 248651927 . A G 641.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.097;CNN_1D=-12.134;DP=111;ExcessHet=3.0103;FS=5.444;MLEAC=1;MLEAF=0.500;MQ=51.82;MQRankSum=-8.992;QD=5.78;ReadPosRankSum=1.188;SOR=1.253 GT:AD:DP:GQ:PL 0/1:78,33:111:99:649,0,1976 1 248652023 . G A 32.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;CNN_1D=-13.398;DP=185;ExcessHet=3.0103;FS=5.745;MLEAC=1;MLEAF=0.500;MQ=42.73;MQRankSum=-1.544;QD=0.18;ReadPosRankSum=0.724;SOR=1.110 GT:AD:DP:GQ:PL 0/1:162,23:185:40:40,0,3977 1 248652058 . G A 402.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;CNN_1D=-10.243;DP=148;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=40.04;MQRankSum=-1.465;QD=2.72;ReadPosRankSum=-0.502;SOR=0.514 GT:AD:DP:GQ:PL 0/1:129,19:148:99:410,0,5325 1 248652061 . C T 402.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822;CNN_1D=-10.799;DP=145;ExcessHet=3.0103;FS=4.900;MLEAC=1;MLEAF=0.500;MQ=39.73;MQRankSum=-1.327;QD=2.78;ReadPosRankSum=-0.730;SOR=0.500 GT:AD:DP:GQ:PL 0/1:126,19:145:99:410,0,5325 1 248652071 . G C 354.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;CNN_1D=-9.687;DP=129;ExcessHet=3.0103;FS=5.309;MLEAC=1;MLEAF=0.500;MQ=37.96;MQRankSum=-1.032;QD=2.75;ReadPosRankSum=-1.041;SOR=0.488 GT:AD:DP:GQ:PL 0/1:112,17:129:99:362,0,4821 1 248652175 . G A 39.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;CNN_1D=-6.509;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=30.80;MQRankSum=-1.569;QD=1.52;ReadPosRankSum=-0.995;SOR=0.046 GT:AD:DP:GQ:PL 0/1:22,4:26:47:47,0,649 1 248685253 . T C 4786.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.572;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.36;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4800,489,0 1 248722611 . C G 232.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;CNN_1D=-0.468;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=31.03;MQRankSum=-0.241;QD=25.84;ReadPosRankSum=-0.366;SOR=1.402 GT:AD:DP:GQ:PL 0/1:3,6:9:99:240,0,150 1 248722621 . G A 274.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;CNN_1D=-0.551;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=30.33;MQRankSum=-0.129;QD=24.96;ReadPosRankSum=0.179;SOR=1.270 GT:AD:DP:GQ:PL 0/1:4,7:11:99:282,0,147 1 248722624 . C T 274.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;CNN_1D=-1.106;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=30.33;MQRankSum=-0.129;QD=24.96;ReadPosRankSum=0.269;SOR=1.270 GT:AD:DP:GQ:PL 0/1:4,7:11:99:282,0,147 1 248722659 . C T 220.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;CNN_1D=-2.139;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=31.05;MQRankSum=0.417;QD=13.79;ReadPosRankSum=2.135;SOR=0.693 GT:AD:DP:GQ:PL 0/1:8,8:16:99:228,0,217 1 248722671 . T A 218.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;CNN_1D=-1.827;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=31.05;MQRankSum=0.417;QD=13.66;ReadPosRankSum=1.348;SOR=0.693 GT:AD:DP:GQ:PL 0/1:8,8:16:99:226,0,218 1 248722722 . T C 924.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=0.199;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=34.19;QD=33.00;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,28:28:84:938,84,0 1 248722777 . T A 463.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;CNN_1D=-2.564;DP=54;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.500;MQ=43.58;MQRankSum=-0.395;QD=8.59;ReadPosRankSum=-1.031;SOR=0.732 GT:AD:DP:GQ:PL 0/1:34,20:54:99:471,0,820 1 248737095 . T C 118.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;CNN_1D=-3.084;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=38.72;MQRankSum=-1.834;QD=19.77;ReadPosRankSum=-1.282;SOR=3.258 GT:AD:DP:GQ:PL 0/1:2,4:6:31:126,0,31 1 248737259 . C G 1197.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-3.098;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=36.31;QD=31.50;SOR=5.892 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1211,114,0 1 248737343 . C T 1519.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;CNN_1D=-8.248;DP=148;ExcessHet=3.0103;FS=7.227;MLEAC=1;MLEAF=0.500;MQ=52.62;MQRankSum=-1.683;QD=10.27;ReadPosRankSum=-1.836;SOR=1.375 GT:AD:DP:GQ:PL 0/1:105,43:148:99:1527,0,4271 1 248737348 . G A 1598.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;CNN_1D=-7.834;DP=164;ExcessHet=3.0103;FS=5.275;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=-2.273;QD=9.75;ReadPosRankSum=-1.874;SOR=1.184 GT:AD:DP:GQ:PL 0/1:114,50:164:99:1606,0,4519 1 248737595 . A G 676.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.908;CNN_1D=-7.479;DP=108;ExcessHet=3.0103;FS=18.922;MLEAC=1;MLEAF=0.500;MQ=40.73;MQRankSum=0.937;QD=6.26;ReadPosRankSum=-0.243;SOR=2.494 GT:AD:DP:GQ:PL 0/1:79,29:108:99:684,0,2279 1 248737645 . T C 67.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;CNN_1D=-13.688;DP=118;ExcessHet=3.0103;FS=32.803;MLEAC=1;MLEAF=0.500;MQ=39.93;MQRankSum=-0.952;QD=0.57;ReadPosRankSum=-0.473;SOR=5.172 GT:AD:DP:GQ:PL 0/1:105,13:118:75:75,0,2793 1 248789504 . T C 2124.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.288;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.10;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2138,219,0 1 248790075 . A G 2968.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.687;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.54;SOR=0.900 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2982,312,0 1 248801778 . A T 1290.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.207;CNN_1D=0.975;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=35.74;MQRankSum=0.891;QD=29.32;ReadPosRankSum=-0.394;SOR=0.242 GT:AD:DP:GQ:PL 1/1:1,43:44:99:1304,100,0 1 248801944 . TCAGCACG T 5976.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.017;CNN_1D=-3.346;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQRankSum=1.118;QD=24.76;ReadPosRankSum=-1.290;SOR=0.235 GT:AD:DP:GQ:PL 1/1:1,137:138:99:5990,324,0 1 248802469 . C T 117.10 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-0.891;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=30.77;QD=29.27;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,4:4:12:131,12,0 1 248813547 . G C 1240.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-5.414;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.82;QD=32.63;SOR=7.328 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1254,114,0 1 248813827 . T C 268.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.584;CNN_1D=-7.080;DP=36;ExcessHet=3.0103;FS=18.553;MLEAC=1;MLEAF=0.500;MQ=36.60;MQRankSum=-2.725;QD=7.46;ReadPosRankSum=0.873;SOR=2.627 GT:AD:DP:GQ:PL 0/1:24,12:36:99:276,0,559 1 248813901 . A T 504.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;CNN_1D=-9.495;DP=59;ExcessHet=3.0103;FS=12.329;MLEAC=1;MLEAF=0.500;MQ=32.64;MQRankSum=-2.632;QD=8.55;ReadPosRankSum=-2.799;SOR=2.584 GT:AD:DP:GQ:PL 0/1:37,22:59:99:512,0,902 1 248814052 . T A 4823.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.063;CNN_1D=-3.602;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.10;MQRankSum=1.773;QD=27.72;ReadPosRankSum=-0.856;SOR=0.257 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4837,512,0 1 248814080 . A C 5436.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.277;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.18;QD=28.61;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5450,570,0 1 248814126 . G A 6092.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.960;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.03;QD=27.08;SOR=1.099 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6106,674,0 1 248844959 . T C 1625.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.608;CNN_1D=-2.176;DP=129;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=0.224;SOR=0.857 GT:AD:DP:GQ:PL 0/1:65,64:129:99:1633,0,1509 1 248845097 . C T 1790.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;CNN_1D=-5.429;DP=179;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-0.175;SOR=0.544 GT:AD:DP:GQ:PL 0/1:95,83:178:99:1798,0,2253 1 248845356 . G T 2239.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.077;CNN_1D=-6.003;DP=190;ExcessHet=3.0103;FS=3.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.555;SOR=0.831 GT:AD:DP:GQ:PL 0/1:89,101:190:99:2247,0,2050 1 248845411 . G A 1858.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;CNN_1D=-6.161;DP=176;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.987;SOR=0.761 GT:AD:DP:GQ:PL 0/1:95,81:176:99:1866,0,2189 1 248845458 . C T 1582.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;CNN_1D=-4.173;DP=153;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-1.108;SOR=0.605 GT:AD:DP:GQ:PL 0/1:84,69:153:99:1590,0,2008 1 248845471 . T C 4265.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.536;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.62;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4279,447,0 1 248845499 . A G 4095.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.141;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.64;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4109,428,0 2 45895 . A G 2682.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.872;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.93;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2696,251,0 2 224919 . A G 837.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;CNN_1D=1.160;DP=67;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=1.315;SOR=0.839 GT:AD:DP:GQ:PL 0/1:31,36:67:99:845,0,698 2 242793 . G C 709.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;CNN_1D=-0.047;DP=69;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.313;SOR=0.883 GT:AD:DP:GQ:PL 0/1:33,36:69:99:717,0,747 2 272203 . C T 1863.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;CNN_1D=-6.603;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=0.679;SOR=0.702 GT:AD:DP:GQ:PL 0/1:116,88:204:99:1871,0,2702 2 277003 . A G 940.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;CNN_1D=2.093;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=-0.857;SOR=0.656 GT:AD:DP:GQ:PL 0/1:26,39:65:99:948,0,597 2 677295 . C T 1074.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;CNN_1D=-2.127;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.629;SOR=0.673 GT:AD:DP:GQ:PL 0/1:58,51:109:99:1082,0,1343 2 1168781 . C A 968.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;CNN_1D=-2.159;DP=107;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-0.252;SOR=0.697 GT:AD:DP:GQ:PL 0/1:61,46:107:99:976,0,1445 2 1204796 . C T 1053.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;CNN_1D=-3.337;DP=117;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=-1.419;SOR=0.564 GT:AD:DP:GQ:PL 0/1:66,51:117:99:1061,0,1508 2 1271230 . A G 1890.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.989;CNN_1D=-5.788;DP=180;ExcessHet=3.0103;FS=4.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.844;SOR=0.916 GT:AD:DP:GQ:PL 0/1:94,86:180:99:1898,0,1957 2 1320143 . C T 2917.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.825;CNN_1D=1.355;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.01;ReadPosRankSum=-0.205;SOR=0.896 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2931,274,0 2 1418192 . C G 2315.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.834;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.30;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2329,237,0 2 1460004 . G T 6386.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.085;CNN_1D=-4.753;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.38;ReadPosRankSum=-1.717;SOR=0.355 GT:AD:DP:GQ:PL 1/1:1,224:225:99:6400,634,0 2 1497803 . C T 1742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;CNN_1D=-1.823;DP=129;ExcessHet=3.0103;FS=3.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.518;SOR=0.428 GT:AD:DP:GQ:PL 0/1:56,73:129:99:1750,0,1228 2 1499899 . C T 3037.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;CNN_1D=-9.675;DP=260;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=2.635;SOR=0.602 GT:AD:DP:GQ:PL 0/1:127,133:260:99:3045,0,2780 2 1499927 . A C 2883.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;CNN_1D=-7.574;DP=233;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=2.862;SOR=0.503 GT:AD:DP:GQ:PL 0/1:110,123:233:99:2891,0,2520 2 1520676 . T C 1511.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;CNN_1D=-6.044;DP=181;ExcessHet=3.0103;FS=3.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=0.572;SOR=0.960 GT:AD:DP:GQ:PL 0/1:103,76:179:99:1519,0,2376 2 1647171 . T C 5015.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.953;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.02;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5029,537,0 2 1647242 . C A 1459.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;CNN_1D=-4.886;DP=168;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=0.949;SOR=0.876 GT:AD:DP:GQ:PL 0/1:100,68:168:99:1467,0,2316 2 1652660 . G A 1562.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;CNN_1D=-2.700;DP=132;ExcessHet=3.0103;FS=4.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=1.641;SOR=0.402 GT:AD:DP:GQ:PL 0/1:67,65:132:99:1570,0,1607 2 1652822 . T G 2314.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.203;CNN_1D=3.207;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.22;ReadPosRankSum=-1.310;SOR=0.233 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2328,209,0 2 1664654 . A G 3018.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.874;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.44;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3032,330,0 2 1926437 . G T 4815.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.368;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.28;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4829,477,0 2 3392075 . T C 1129.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;CNN_1D=-3.045;DP=122;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-1.098;SOR=0.550 GT:AD:DP:GQ:PL 0/1:71,51:122:99:1137,0,1667 2 3392295 . A G 955.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;CNN_1D=-2.839;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-1.670;SOR=0.713 GT:AD:DP:GQ:PL 0/1:73,43:116:99:963,0,1666 2 3469463 . G C 1234.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;CNN_1D=-0.895;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-0.957;SOR=0.621 GT:AD:DP:GQ:PL 0/1:43,52:95:99:1242,0,883 2 3483205 . C T 742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;CNN_1D=-2.065;DP=89;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.364;SOR=0.554 GT:AD:DP:GQ:PL 0/1:53,36:89:99:750,0,1247 2 3504687 . A G 3317.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;CNN_1D=-10.598;DP=284;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=0.705;SOR=0.794 GT:AD:DP:GQ:PL 0/1:134,150:284:99:3325,0,3029 2 3518643 . T C 550.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;CNN_1D=2.309;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.118;SOR=0.586 GT:AD:DP:GQ:PL 0/1:20,27:47:99:558,0,382 2 3800383 . C T 1186.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;CNN_1D=-2.451;DP=110;ExcessHet=3.0103;FS=3.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=0.897;SOR=1.027 GT:AD:DP:GQ:PL 0/1:56,54:110:99:1194,0,1162 2 3800496 . C T 1401.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;CNN_1D=1.182;DP=91;ExcessHet=3.0103;FS=1.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=1.734;SOR=0.970 GT:AD:DP:GQ:PL 0/1:32,59:91:99:1409,0,711 2 6990020 . C T 655.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;CNN_1D=-0.455;DP=75;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=1.695;SOR=0.892 GT:AD:DP:GQ:PL 0/1:44,31:75:99:663,0,938 2 7005369 . A G 3336.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.268;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.89;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3350,324,0 2 7137067 . A G 2790.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.565;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.76;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2804,291,0 2 7154632 . T C 2322.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.344;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.64;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2336,252,0 2 7164578 . A G 1014.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;CNN_1D=1.347;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=-0.918;SOR=0.724 GT:AD:DP:GQ:PL 0/1:29,40:69:99:1022,0,610 2 7179843 . CTGCAAG C 2386.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;CNN_1D=-1.411;DP=125;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.40;ReadPosRankSum=2.017;SOR=0.546 GT:AD:DP:GQ:PL 0/1:56,61:117:99:2394,0,3898 2 9491017 . C T 3133.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.276;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.01;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3147,347,0 2 9634856 . A G 584.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;CNN_1D=-1.230;DP=89;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-0.299;SOR=0.538 GT:AD:DP:GQ:PL 0/1:57,32:89:99:592,0,1359 2 9770589 . G GCGGGGC 1340.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;CNN_1D=0.684;DP=74;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.11;ReadPosRankSum=-0.869;SOR=0.397 GT:AD:DP:GQ:PL 0/1:24,34:58:99:1348,0,1296 2 10045014 . C T 3287.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.714;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.83;SOR=1.257 GT:AD:DP:GQ:PL 1/1:0,73:73:99:3301,223,0 2 10045024 . G A 3425.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.220;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.45;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,78:78:99:3439,238,0 2 10050947 . T C 3026.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.900;CNN_1D=1.827;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.02;ReadPosRankSum=0.023;SOR=0.811 GT:AD:DP:GQ:PL 1/1:2,106:108:99:3040,274,0 2 10050960 . A G 2943.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.829;CNN_1D=1.988;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.50;ReadPosRankSum=-0.449;SOR=0.833 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2957,271,0 2 10059770 . G T 3006.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.074;CNN_1D=2.179;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.58;ReadPosRankSum=0.238;SOR=0.420 GT:AD:DP:GQ:PL 1/1:1,108:109:99:3020,286,0 2 10186419 . A G 2318.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;CNN_1D=-7.195;DP=206;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=-0.423;SOR=0.810 GT:AD:DP:GQ:PL 0/1:97,109:206:99:2326,0,2120 2 10188649 . A T 4888.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.351;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.42;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4902,515,0 2 10262920 . T G 3120.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.993;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.16;SOR=1.106 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3134,321,0 2 10580967 . G A 1104.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;CNN_1D=-1.475;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-0.060;SOR=0.696 GT:AD:DP:GQ:PL 0/1:54,52:106:99:1112,0,1072 2 10712278 . C T 788.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;CNN_1D=-0.307;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=-0.023;SOR=0.633 GT:AD:DP:GQ:PL 0/1:44,38:82:99:796,0,1040 2 10784491 . A G 490.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.849;CNN_1D=1.952;DP=45;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.195;SOR=1.093 GT:AD:DP:GQ:PL 0/1:26,19:45:99:498,0,596 2 10808776 . C CAA 2011.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.653;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.19;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,45:45:99:2025,135,0 2 10908893 . A G 2746.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.919;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.74;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2760,296,0 2 10923353 . T C 508.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;CNN_1D=0.670;DP=56;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-0.182;SOR=0.766 GT:AD:DP:GQ:PL 0/1:32,24:56:99:516,0,712 2 10929867 . T C 413.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;CNN_1D=2.254;DP=45;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=0.333;SOR=0.437 GT:AD:DP:GQ:PL 0/1:26,19:45:99:421,0,674 2 10942687 . C T 1273.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;CNN_1D=-3.871;DP=127;ExcessHet=3.0103;FS=6.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.324;SOR=0.998 GT:AD:DP:GQ:PL 0/1:69,58:127:99:1281,0,1599 2 11053020 . A G 4499.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.176;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.03;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4513,465,0 2 11053923 . G A 1454.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;CNN_1D=-0.390;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=1.370;SOR=0.667 GT:AD:DP:GQ:PL 0/1:40,59:99:99:1462,0,951 2 11312181 . G A 1926.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.179;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.34;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1940,227,0 2 11359120 . G T 1309.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.146;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.27;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1323,144,0 2 11389814 . G A 599.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;CNN_1D=-0.068;DP=84;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=0.878;SOR=0.454 GT:AD:DP:GQ:PL 0/1:56,28:84:99:607,0,1421 2 11702661 . A C 1472.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;CNN_1D=-3.416;DP=126;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-0.897;SOR=0.567 GT:AD:DP:GQ:PL 0/1:59,67:126:99:1480,0,1301 2 11727507 . G A 996.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;CNN_1D=-1.309;DP=97;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=1.560;SOR=0.826 GT:AD:DP:GQ:PL 0/1:48,47:95:99:1004,0,1075 2 11738091 . T C 2301.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.533;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.39;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2315,252,0 2 11752635 . T C 1667.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.184;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.25;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1681,177,0 2 11758429 . G A 1313.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933;CNN_1D=1.406;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=1.590;SOR=0.741 GT:AD:DP:GQ:PL 0/1:30,52:82:99:1321,0,714 2 11774324 . G A 1514.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;CNN_1D=-0.444;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=1.223;SOR=0.736 GT:AD:DP:GQ:PL 0/1:56,70:126:99:1522,0,1235 2 11810095 . G A 1966.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.807;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.77;SOR=0.760 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1980,180,0 2 11853913 . G A 2668.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.277;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.38;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2682,282,0 2 15601441 . C T 834.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;CNN_1D=1.624;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=0.932;SOR=0.603 GT:AD:DP:GQ:PL 0/1:26,39:65:99:842,0,512 2 15607842 . T C 602.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;CNN_1D=1.028;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-0.515;SOR=0.643 GT:AD:DP:GQ:PL 0/1:29,29:58:99:610,0,640 2 15614404 . T C 1018.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;CNN_1D=-0.321;DP=85;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=-1.090;SOR=0.941 GT:AD:DP:GQ:PL 0/1:42,43:85:99:1026,0,1000 2 15615910 . A G 1425.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;CNN_1D=-1.791;DP=112;ExcessHet=3.0103;FS=1.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=-1.219;SOR=0.540 GT:AD:DP:GQ:PL 0/1:46,66:112:99:1433,0,909 2 15616013 . C G 613.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;CNN_1D=1.678;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=-1.432;SOR=0.793 GT:AD:DP:GQ:PL 0/1:24,28:52:99:621,0,498 2 15674686 . T C 1275.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;CNN_1D=0.345;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-0.107;SOR=0.684 GT:AD:DP:GQ:PL 0/1:34,57:91:99:1283,0,665 2 17696573 . C T 1048.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;CNN_1D=-2.514;DP=131;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=0.956;SOR=0.466 GT:AD:DP:GQ:PL 0/1:83,48:131:99:1056,0,2054 2 17698678 . A G 684.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;CNN_1D=0.495;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.652;SOR=0.728 GT:AD:DP:GQ:PL 0/1:43,27:70:99:692,0,1097 2 17884495 . C T 531.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;CNN_1D=2.533;DP=43;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=1.739;SOR=0.931 GT:AD:DP:GQ:PL 0/1:19,24:43:99:539,0,418 2 17897488 . T C 975.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;CNN_1D=-1.493;DP=96;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-1.432;SOR=0.666 GT:AD:DP:GQ:PL 0/1:50,45:95:99:983,0,1148 2 17942775 . T A 1129.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;CNN_1D=-1.034;DP=101;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-0.330;SOR=0.586 GT:AD:DP:GQ:PL 0/1:51,50:101:99:1137,0,1133 2 17954027 . G A 1235.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.166;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.12;SOR=1.501 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1249,123,0 2 17962450 . A G 1849.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;CNN_1D=-4.153;DP=158;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=0.665;SOR=0.671 GT:AD:DP:GQ:PL 0/1:78,79:157:99:1857,0,1801 2 17962518 . C T 1104.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.605;CNN_1D=-2.602;DP=104;ExcessHet=3.0103;FS=9.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=1.072;SOR=1.457 GT:AD:DP:GQ:PL 0/1:55,49:104:99:1112,0,1433 2 17998025 . A T 2534.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.919;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.90;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2548,245,0 2 17998095 . C T 3583.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.063;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.11;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3597,357,0 2 17998331 . T C 4889.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.687;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.14;SOR=1.394 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4903,471,0 2 18112473 . G A 4612.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.534;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.56;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4626,465,0 2 18113623 . A G 3908.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.557;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.16;SOR=1.072 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3922,402,0 2 18757501 . G C 2259.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.608;CNN_1D=2.304;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.97;ReadPosRankSum=-1.771;SOR=0.922 GT:AD:DP:GQ:PL 1/1:2,85:87:99:2273,211,0 2 18766123 . C T 1235.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;CNN_1D=-3.794;DP=121;ExcessHet=3.0103;FS=6.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=0.257;SOR=0.632 GT:AD:DP:GQ:PL 0/1:69,52:121:99:1243,0,1669 2 18766156 . G T 1265.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;CNN_1D=-3.006;DP=129;ExcessHet=3.0103;FS=4.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=-1.367;SOR=0.532 GT:AD:DP:GQ:PL 0/1:73,56:129:99:1273,0,1797 2 18768850 . A G 2178.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.618;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.92;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2192,233,0 2 20131079 . T C 1852.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.284;CNN_1D=3.219;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.08;ReadPosRankSum=1.416;SOR=0.246 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1866,171,0 2 20403794 . A T 4994.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.110;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.20;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5008,513,0 2 20823724 . T C 3765.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.575;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.68;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3779,407,0 2 20824498 . C T 1394.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;CNN_1D=-1.093;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=-1.445;SOR=0.725 GT:AD:DP:GQ:PL 0/1:51,59:110:99:1402,0,1136 2 20824559 . C T 1341.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;CNN_1D=-5.433;DP=151;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.544;SOR=0.708 GT:AD:DP:GQ:PL 0/1:82,68:150:99:1349,0,1927 2 20824658 . G A 710.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;CNN_1D=0.180;DP=77;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.785;SOR=0.839 GT:AD:DP:GQ:PL 0/1:46,31:77:99:718,0,1207 2 20838318 . G A 957.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;CNN_1D=-1.107;DP=102;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=2.122;SOR=0.725 GT:AD:DP:GQ:PL 0/1:58,44:102:99:965,0,1466 2 20845273 . G A 1017.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680;CNN_1D=1.209;DP=83;ExcessHet=3.0103;FS=2.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=0.233;SOR=0.439 GT:AD:DP:GQ:PL 0/1:38,45:83:99:1025,0,956 2 20867122 . G GGGCGGCGGC,GGGCGGCGGCGGCGGCGGC 1035.10 PASS AC=1,1;AF=0.500,0.500;AN=2;CNN_1D=0.795;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.88;QD=27.22;SOR=0.963 GT:AD:DP:GQ:PL 1/2:0,14,9:23:99:1052,405,354,592,0,560 2 20870579 . G A 387.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;CNN_1D=3.029;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=1.677;SOR=0.765 GT:AD:DP:GQ:PL 0/1:10,13:23:99:395,0,239 2 20871190 . A C 1252.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.938;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.54;SOR=1.845 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1266,123,0 2 21230101 . G T 1401.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;CNN_1D=-2.261;DP=124;ExcessHet=3.0103;FS=2.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=1.323;SOR=0.970 GT:AD:DP:GQ:PL 0/1:68,55:123:99:1409,0,1694 2 21231524 . G A 5451.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.756;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.15;SOR=0.890 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5465,561,0 2 21232803 . T C 3372.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.683;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.58;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3386,341,0 2 21235475 . T C 4093.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.244;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.45;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4107,417,0 2 21250914 . G A 1549.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.883;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.61;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1563,147,0 2 21360583 . A G 927.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;CNN_1D=-0.431;DP=94;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.461;SOR=0.521 GT:AD:DP:GQ:PL 0/1:53,41:94:99:935,0,1376 2 21364968 . T C 561.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;CNN_1D=2.863;DP=38;ExcessHet=3.0103;FS=4.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-0.852;SOR=0.248 GT:AD:DP:GQ:PL 0/1:15,23:38:99:569,0,349 2 23865260 . T C 4040.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.488;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.49;SOR=1.043 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4054,411,0 2 23919375 . C T 2629.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.995;CNN_1D=2.910;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.10;ReadPosRankSum=0.697;SOR=0.343 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2643,257,0 2 23926659 . T C 3943.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.161;CNN_1D=0.939;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.77;ReadPosRankSum=1.575;SOR=0.395 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3957,341,0 2 24108652 . T C 817.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.432;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.17;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,29:29:87:831,87,0 2 24149439 . G A 795.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;CNN_1D=1.402;DP=64;ExcessHet=3.0103;FS=3.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-1.417;SOR=0.330 GT:AD:DP:GQ:PL 0/1:29,35:64:99:803,0,722 2 24342505 . T C 1152.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;CNN_1D=0.319;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=-1.383;SOR=0.619 GT:AD:DP:GQ:PL 0/1:37,50:87:99:1160,0,790 2 24344060 . T G 1068.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;CNN_1D=-2.478;DP=109;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.704;SOR=0.988 GT:AD:DP:GQ:PL 0/1:56,53:109:99:1076,0,1184 2 24369674 . C T 3502.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.922;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.02;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3516,375,0 2 24384424 . T C 2468.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.029;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.73;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2482,266,0 2 24387178 . G GC 2769.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.417;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.68;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2783,226,0 2 24390517 . G A 667.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;CNN_1D=-1.190;DP=81;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=0.459;SOR=0.928 GT:AD:DP:GQ:PL 0/1:49,32:81:99:675,0,1200 2 24398446 . A T 1269.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;CNN_1D=0.037;DP=93;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=1.049;SOR=0.580 GT:AD:DP:GQ:PL 0/1:36,57:93:99:1277,0,746 2 24413298 . A G 890.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;CNN_1D=1.313;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-0.184;SOR=0.671 GT:AD:DP:GQ:PL 0/1:36,38:74:99:898,0,864 2 24431184 . C T 1366.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;CNN_1D=-2.776;DP=119;ExcessHet=3.0103;FS=3.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=-0.602;SOR=1.010 GT:AD:DP:GQ:PL 0/1:56,63:119:99:1374,0,1124 2 24432839 . A G 1226.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;CNN_1D=-4.151;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-1.742;SOR=0.639 GT:AD:DP:GQ:PL 0/1:76,59:135:99:1234,0,1791 2 24475205 . T C 2501.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.586;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.08;SOR=1.065 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2515,258,0 2 24524958 . C T 411.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;CNN_1D=-0.378;DP=56;ExcessHet=3.0103;FS=2.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-0.933;SOR=1.083 GT:AD:DP:GQ:PL 0/1:36,20:56:99:419,0,792 2 24905927 . G C 2854.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.526;CNN_1D=1.823;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=0.965;SOR=0.912 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2868,283,0 2 24974945 . T G 4687.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.219;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.75;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4701,489,0 2 25046090 . T C 873.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;CNN_1D=-2.037;DP=101;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.548;SOR=0.569 GT:AD:DP:GQ:PL 0/1:57,44:101:99:881,0,1337 2 25047408 . A G 677.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;CNN_1D=-0.009;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-1.949;SOR=0.683 GT:AD:DP:GQ:PL 0/1:39,30:69:99:685,0,915 2 25050977 . T C 1488.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;CNN_1D=-2.030;DP=119;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-0.132;SOR=0.619 GT:AD:DP:GQ:PL 0/1:58,60:118:99:1496,0,1253 2 25062852 . C T 2125.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;CNN_1D=-7.187;DP=198;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.839;SOR=0.589 GT:AD:DP:GQ:PL 0/1:101,97:198:99:2133,0,2253 2 25064193 . G A 970.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;CNN_1D=2.396;DP=66;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=0.959;SOR=0.567 GT:AD:DP:GQ:PL 0/1:27,39:66:99:978,0,573 2 25194741 . G A 1676.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.664;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.40;SOR=0.960 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1690,171,0 2 25314186 . T C 2274.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.361;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.53;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2288,231,0 2 25352966 . A C 1165.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;CNN_1D=-0.185;DP=95;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=1.090;SOR=0.544 GT:AD:DP:GQ:PL 0/1:44,51:95:99:1173,0,951 2 25377176 . T C 1695.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;CNN_1D=-5.145;DP=175;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-0.306;SOR=0.597 GT:AD:DP:GQ:PL 0/1:97,78:175:99:1703,0,2203 2 25469913 . C T 4290.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.104;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.79;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4304,446,0 2 25655772 . T C 1726.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.016;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.84;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1740,186,0 2 26174744 . C T 312.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;CNN_1D=1.579;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=-0.626;SOR=0.612 GT:AD:DP:GQ:PL 0/1:21,15:36:99:320,0,479 2 26177198 . A G 1472.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;CNN_1D=-2.215;DP=119;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-0.931;SOR=0.936 GT:AD:DP:GQ:PL 0/1:58,61:119:99:1480,0,1252 2 26203678 . T C 4223.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.946;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.53;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4237,429,0 2 26204640 . G A 1207.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;CNN_1D=-3.043;DP=123;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=2.730;SOR=0.985 GT:AD:DP:GQ:PL 0/1:67,54:121:99:1215,0,1515 2 26321526 . T C 583.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;CNN_1D=0.220;DP=58;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-1.923;SOR=0.859 GT:AD:DP:GQ:PL 0/1:30,28:58:99:591,0,708 2 26399214 . G A 2104.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.336;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.43;SOR=1.209 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2118,222,0 2 26408064 . T C 887.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.739;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.88;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,33:33:99:901,99,0 2 26477125 . G GACT 1381.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.094;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=37.42;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1395,93,0 2 26534801 . G A 3768.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.840;CNN_1D=1.593;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.14;ReadPosRankSum=-0.596;SOR=0.432 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3782,336,0 2 26536299 . C G 1051.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;CNN_1D=-0.494;DP=87;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-1.148;SOR=0.361 GT:AD:DP:GQ:PL 0/1:37,49:86:99:1059,0,843 2 26536694 . C T 1200.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;CNN_1D=-3.243;DP=125;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.557;SOR=0.677 GT:AD:DP:GQ:PL 0/1:70,55:125:99:1208,0,1622 2 26537499 . A C 3020.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.705;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.04;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3034,312,0 2 26539806 . A G 1901.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;CNN_1D=-4.637;DP=155;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=1.473;SOR=0.884 GT:AD:DP:GQ:PL 0/1:77,78:155:99:1909,0,1647 2 26590084 . T G 494.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;CNN_1D=0.187;DP=62;ExcessHet=3.0103;FS=3.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-1.263;SOR=1.197 GT:AD:DP:GQ:PL 0/1:37,24:61:99:502,0,857 2 26607992 . T C 686.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;CNN_1D=2.924;DP=42;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=-0.857;SOR=1.071 GT:AD:DP:GQ:PL 0/1:13,29:42:99:694,0,265 2 26647277 . T G 4011.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.692;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.85;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4025,432,0 2 26667615 . T C 2757.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.729;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.33;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2771,281,0 2 26676322 . A G 4693.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.702;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.93;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4707,502,0 2 26678040 . G T 984.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;CNN_1D=1.775;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=0.282;SOR=0.743 GT:AD:DP:GQ:PL 0/1:28,42:70:99:992,0,612 2 26680903 . G A 869.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;CNN_1D=-0.365;DP=82;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.919;SOR=0.917 GT:AD:DP:GQ:PL 0/1:42,40:82:99:877,0,943 2 26699126 . C G 1151.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;CNN_1D=0.539;DP=83;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=0.260;SOR=0.816 GT:AD:DP:GQ:PL 0/1:39,44:83:99:1159,0,906 2 26699855 . G C 1167.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;CNN_1D=-3.573;DP=122;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=1.953;SOR=0.911 GT:AD:DP:GQ:PL 0/1:72,50:122:99:1175,0,1639 2 26700700 . G A 1720.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;CNN_1D=-1.397;DP=120;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=-0.458;SOR=0.546 GT:AD:DP:GQ:PL 0/1:44,76:120:99:1728,0,921 2 26739423 . T C 687.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;CNN_1D=-1.649;DP=94;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-1.406;SOR=0.549 GT:AD:DP:GQ:PL 0/1:56,37:93:99:695,0,1240 2 26741961 . G A 785.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;CNN_1D=-2.438;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=2.952;SOR=0.690 GT:AD:DP:GQ:PL 0/1:68,35:103:99:793,0,1598 2 26750782 . G A 718.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;CNN_1D=-0.254;DP=73;ExcessHet=3.0103;FS=4.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.055;SOR=1.214 GT:AD:DP:GQ:PL 0/1:40,33:73:99:726,0,969 2 26798893 . A T 1963.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;CNN_1D=-7.511;DP=202;ExcessHet=3.0103;FS=4.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.731;SOR=0.997 GT:AD:DP:GQ:PL 0/1:114,88:202:99:1971,0,2634 2 26799031 . G A 1318.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;CNN_1D=-0.048;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=-0.718;SOR=0.716 GT:AD:DP:GQ:PL 0/1:42,51:93:99:1326,0,1037 2 26800422 . G A 1844.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;CNN_1D=-6.256;DP=182;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.870;SOR=0.793 GT:AD:DP:GQ:PL 0/1:97,85:182:99:1852,0,2098 2 26804247 . T C 1674.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;CNN_1D=-5.037;DP=173;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-0.202;SOR=0.780 GT:AD:DP:GQ:PL 0/1:90,83:173:99:1682,0,1915 2 27015118 . G A 2005.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.372;CNN_1D=3.441;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.38;ReadPosRankSum=0.661;SOR=0.336 GT:AD:DP:GQ:PL 1/1:1,75:76:99:2019,188,0 2 27163044 . T C 2509.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.327;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.57;SOR=1.130 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2523,273,0 2 27169842 . C A 3195.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.030;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.27;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3209,338,0 2 27246285 . C T 4105.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.233;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.37;SOR=0.720 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4119,449,0 2 27293059 . G C 857.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;CNN_1D=-4.067;DP=131;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=0.109;SOR=0.864 GT:AD:DP:GQ:PL 0/1:85,44:129:99:865,0,1968 2 27303755 . A G 3333.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.810;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.25;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3347,354,0 2 27324724 . G C 3300.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.218;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.21;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3314,351,0 2 27324751 . G T 2448.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.330;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.14;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2462,252,0 2 27351948 . T G 4209.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.488;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.63;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4223,441,0 2 27424636 . G A 1927.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;CNN_1D=-7.619;DP=207;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=1.541;SOR=0.781 GT:AD:DP:GQ:PL 0/1:119,88:207:99:1935,0,2843 2 27428295 . A G 5008.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.777;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.37;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5022,549,0 2 27435250 . A G 2686.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.215;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.23;SOR=1.259 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2700,258,0 2 27435268 . C T 874.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;CNN_1D=-0.394;DP=83;ExcessHet=3.0103;FS=7.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=-0.831;SOR=0.273 GT:AD:DP:GQ:PL 0/1:44,39:83:99:882,0,1067 2 27440785 . C T 5859.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.699;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.86;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5873,609,0 2 27447243 . C A 1379.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;CNN_1D=-3.666;DP=142;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=1.597;SOR=0.600 GT:AD:DP:GQ:PL 0/1:80,62:142:99:1387,0,1839 2 27460968 . A G 1348.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;CNN_1D=-4.168;DP=132;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-0.084;SOR=0.836 GT:AD:DP:GQ:PL 0/1:69,63:132:99:1356,0,1642 2 27462076 . C T 1307.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;CNN_1D=-3.353;DP=130;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=1.129;SOR=0.524 GT:AD:DP:GQ:PL 0/1:76,54:130:99:1315,0,1929 2 27528692 . T C 696.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;CNN_1D=-1.025;DP=83;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=0.093;SOR=0.894 GT:AD:DP:GQ:PL 0/1:49,34:83:99:704,0,1190 2 27550967 . A G 1409.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;CNN_1D=-0.564;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=2.316;SOR=0.749 GT:AD:DP:GQ:PL 0/1:41,60:101:99:1417,0,811 2 27589810 . T C 872.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;CNN_1D=1.722;DP=66;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-0.379;SOR=0.484 GT:AD:DP:GQ:PL 0/1:32,34:66:99:880,0,747 2 27592423 . C T 596.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;CNN_1D=-0.942;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=-1.196;SOR=0.657 GT:AD:DP:GQ:PL 0/1:47,30:77:99:604,0,1261 2 27667297 . A G 673.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;CNN_1D=0.888;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.128;SOR=0.693 GT:AD:DP:GQ:PL 0/1:32,32:64:99:681,0,739 2 27676287 . A T 965.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;CNN_1D=-1.877;DP=100;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-0.718;SOR=0.843 GT:AD:DP:GQ:PL 0/1:58,41:99:99:973,0,1473 2 27693802 . G C 1138.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;CNN_1D=-3.941;DP=131;ExcessHet=3.0103;FS=3.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=1.131;SOR=1.040 GT:AD:DP:GQ:PL 0/1:78,52:130:99:1146,0,1837 2 27722322 . G A 1640.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;CNN_1D=-4.407;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-2.297;SOR=0.745 GT:AD:DP:GQ:PL 0/1:71,75:146:99:1648,0,1594 2 27730940 . T C 1188.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;CNN_1D=-2.209;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.676;SOR=0.760 GT:AD:DP:GQ:PL 0/1:61,54:115:99:1196,0,1390 2 27801403 . C G 2905.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;CNN_1D=-2.502;DP=172;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.89;ReadPosRankSum=0.315;SOR=0.573 GT:AD:DP:GQ:PL 0/1:92,80:172:99:2913,0,4255 2 27801418 . C A 3054.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533;CNN_1D=-3.327;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.45;ReadPosRankSum=-0.152;SOR=0.674 GT:AD:DP:GQ:PL 0/1:92,83:175:99:3062,0,4147 2 27801493 . T C 2091.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;CNN_1D=-5.058;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-0.700;SOR=0.733 GT:AD:DP:GQ:PL 0/1:91,97:188:99:2099,0,2166 2 27801759 . A G 2188.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;CNN_1D=-6.459;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.063;SOR=0.694 GT:AD:DP:GQ:PL 0/1:97,91:188:99:2196,0,2210 2 27804432 . T C 5357.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.201;CNN_1D=-15.303;DP=390;ExcessHet=3.0103;FS=5.470;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.498;QD=14.03;ReadPosRankSum=1.193;SOR=0.835 GT:AD:DP:GQ:PL 0/1:165,217:382:99:5365,0,3577 2 27838058 . C A 686.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;CNN_1D=-0.708;DP=75;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-0.112;SOR=0.941 GT:AD:DP:GQ:PL 0/1:42,33:75:99:694,0,998 2 27851918 . G A 1400.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;CNN_1D=-3.816;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=1.192;SOR=0.719 GT:AD:DP:GQ:PL 0/1:74,66:140:99:1408,0,1787 2 27887034 . C A 1832.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;CNN_1D=-4.137;DP=161;ExcessHet=3.0103;FS=3.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-1.141;SOR=0.617 GT:AD:DP:GQ:PL 0/1:84,77:161:99:1840,0,2111 2 28761257 . A G 3563.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.740;CNN_1D=0.397;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.99;ReadPosRankSum=0.597;SOR=0.966 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3577,346,0 2 28761981 . G C 906.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;CNN_1D=-1.057;DP=95;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=1.099;SOR=0.495 GT:AD:DP:GQ:PL 0/1:52,42:94:99:914,0,1221 2 28814033 . A G 2508.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.299;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.40;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2522,285,0 2 29001691 . A G 2041.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.928;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.58;SOR=1.211 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2055,207,0 2 29135468 . C G 2697.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.059;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.09;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2711,287,0 2 29152456 . A G 2338.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.018;CNN_1D=2.967;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.51;ReadPosRankSum=-0.466;SOR=1.468 GT:AD:DP:GQ:PL 1/1:2,80:82:99:2352,197,0 2 29169516 . C T 2098.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;CNN_1D=-4.878;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-0.050;SOR=0.662 GT:AD:DP:GQ:PL 0/1:81,88:169:99:2106,0,1809 2 29169612 . T C 3291.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.717;CNN_1D=1.680;DP=114;ExcessHet=3.0103;FS=4.037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.87;ReadPosRankSum=-1.307;SOR=0.982 GT:AD:DP:GQ:PL 1/1:1,113:114:99:3305,303,0 2 29226498 . G A 4590.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.517;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.33;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4604,486,0 2 29226512 . A G 3877.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.297;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.09;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3891,414,0 2 29246044 . T C 1083.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.193;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.50;SOR=1.493 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1097,114,0 2 29274704 . C T 976.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;CNN_1D=-0.988;DP=84;ExcessHet=3.0103;FS=5.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-1.034;SOR=0.569 GT:AD:DP:GQ:PL 0/1:43,41:84:99:984,0,969 2 29274720 . A G 954.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.007;CNN_1D=-0.734;DP=85;ExcessHet=3.0103;FS=5.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=0.564;SOR=0.888 GT:AD:DP:GQ:PL 0/1:45,40:85:99:962,0,1005 2 29287926 . C CGCT 2383.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;CNN_1D=-3.233;DP=138;ExcessHet=3.0103;FS=5.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=-0.437;SOR=0.375 GT:AD:DP:GQ:PL 0/1:61,63:124:99:2391,0,2646 2 29294629 . C T 1088.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;CNN_1D=-4.336;DP=129;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-2.118;SOR=0.758 GT:AD:DP:GQ:PL 0/1:78,51:129:99:1096,0,1856 2 29294754 . G C 1071.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;CNN_1D=-1.925;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-0.789;SOR=0.732 GT:AD:DP:GQ:PL 0/1:61,43:104:99:1079,0,1616 2 29295016 . A G 1479.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;CNN_1D=-5.641;DP=174;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-0.384;SOR=0.608 GT:AD:DP:GQ:PL 0/1:106,68:174:99:1487,0,2698 2 29295676 . G A 1688.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;CNN_1D=-3.786;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=0.434;SOR=0.646 GT:AD:DP:GQ:PL 0/1:75,73:148:99:1696,0,1724 2 29296870 . C T 1514.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940;CNN_1D=-2.604;DP=132;ExcessHet=3.0103;FS=7.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=2.647;SOR=1.009 GT:AD:DP:GQ:PL 0/1:66,66:132:99:1522,0,1744 2 29297068 . C T 1121.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;CNN_1D=-0.665;DP=104;ExcessHet=3.0103;FS=3.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-0.062;SOR=0.388 GT:AD:DP:GQ:PL 0/1:53,51:104:99:1129,0,1332 2 29356669 . A G 489.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;CNN_1D=1.950;DP=34;ExcessHet=3.0103;FS=3.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-2.609;SOR=1.329 GT:AD:DP:GQ:PL 0/1:14,20:34:99:497,0,306 2 29383256 . G T 884.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;CNN_1D=-0.004;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.233;SOR=0.613 GT:AD:DP:GQ:PL 0/1:44,42:86:99:892,0,980 2 29416366 . G C 3365.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;CNN_1D=-9.557;DP=257;ExcessHet=3.0103;FS=3.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=-0.962;SOR=0.905 GT:AD:DP:GQ:PL 0/1:124,133:257:99:3373,0,3021 2 29416481 . T C 3043.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;CNN_1D=-6.949;DP=224;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=0.728;SOR=0.673 GT:AD:DP:GQ:PL 0/1:103,120:223:99:3051,0,2588 2 29416572 . T C 6779.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-4.024;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.73;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6793,684,0 2 29445458 . G T 1670.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;CNN_1D=-3.675;DP=155;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=1.980;SOR=0.948 GT:AD:DP:GQ:PL 0/1:78,77:155:99:1678,0,1680 2 29455267 . A G 4711.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.848;CNN_1D=-1.597;DP=175;ExcessHet=3.0103;FS=3.240;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.92;ReadPosRankSum=-0.515;SOR=0.409 GT:AD:DP:GQ:PL 1/1:1,174:175:99:4725,487,0 2 29543663 . T C 6165.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-4.258;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.28;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6179,654,0 2 29940529 . A T 2880.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.950;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.96;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2894,309,0 2 30143499 . G C 3429.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.042;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.89;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3443,333,0 2 30682470 . A T 1074.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437;CNN_1D=-0.162;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=0.810;SOR=0.627 GT:AD:DP:GQ:PL 0/1:40,47:87:99:1082,0,976 2 30976058 . C T 1404.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;CNN_1D=-0.325;DP=104;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-0.085;SOR=0.807 GT:AD:DP:GQ:PL 0/1:49,55:104:99:1412,0,1086 2 30980940 . C T 1985.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;CNN_1D=-4.233;DP=150;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=-0.959;SOR=0.606 GT:AD:DP:GQ:PL 0/1:61,87:148:99:1993,0,1284 2 30986989 . G T 2494.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.004;CNN_1D=3.328;DP=90;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.71;ReadPosRankSum=1.040;SOR=0.949 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2508,259,0 2 31135184 . G T 854.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;CNN_1D=-2.292;DP=98;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-1.996;SOR=0.735 GT:AD:DP:GQ:PL 0/1:58,40:98:99:862,0,1392 2 31178818 . C T 1263.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;CNN_1D=-2.951;DP=126;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-0.561;SOR=0.823 GT:AD:DP:GQ:PL 0/1:69,57:126:99:1271,0,1665 2 31414807 . C G 2050.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.403;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.87;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2064,213,0 2 31571786 . A G 3514.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.239;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.80;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3528,366,0 2 31610701 . C T 1025.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;CNN_1D=-3.630;DP=122;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-0.363;SOR=0.750 GT:AD:DP:GQ:PL 0/1:73,49:122:99:1033,0,1714 2 31611143 . C T 1518.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;CNN_1D=-0.862;DP=103;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=-0.949;SOR=0.526 GT:AD:DP:GQ:PL 0/1:39,64:103:99:1526,0,813 2 31805706 . G C 3996.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.598;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.96;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4010,414,0 2 31805880 . A AG 5756.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.361;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=24.03;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5770,487,0 2 32475109 . G A 1428.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;CNN_1D=-2.127;DP=123;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.772;SOR=0.963 GT:AD:DP:GQ:PL 0/1:63,60:123:99:1436,0,1500 2 32476390 . T G 1945.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.508;CNN_1D=-4.660;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.342;SOR=0.695 GT:AD:DP:GQ:PL 0/1:85,79:164:99:1953,0,1969 2 32582241 . T C 456.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;CNN_1D=0.845;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=1.057;SOR=0.805 GT:AD:DP:GQ:PL 0/1:31,22:53:99:464,0,698 2 32656153 . C T 377.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;CNN_1D=2.959;DP=27;ExcessHet=3.0103;FS=3.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.733;SOR=0.223 GT:AD:DP:GQ:PL 0/1:12,15:27:99:385,0,284 2 32667182 . G C 3352.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.649;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.65;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3366,349,0 2 32689842 . C T 1357.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;CNN_1D=-3.207;DP=136;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-0.301;SOR=0.512 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1365,0,1732 2 32702561 . G A 1192.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;CNN_1D=-2.395;DP=117;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=1.557;SOR=0.600 GT:AD:DP:GQ:PL 0/1:59,58:117:99:1200,0,1306 2 32712875 . A C 1556.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.604;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.82;SOR=1.220 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1570,162,0 2 32713706 . A T 1071.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.771;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.75;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1085,108,0 2 32718615 . T C 1100.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;CNN_1D=1.026;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=0.517;SOR=0.759 GT:AD:DP:GQ:PL 0/1:32,45:77:99:1108,0,658 2 32724715 . C G 1388.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;CNN_1D=-3.319;DP=134;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.801;SOR=0.763 GT:AD:DP:GQ:PL 0/1:71,62:133:99:1396,0,1701 2 32774505 . C T 933.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;CNN_1D=-0.590;DP=78;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=0.025;SOR=1.005 GT:AD:DP:GQ:PL 0/1:36,42:78:99:941,0,792 2 32819010 . G A 728.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;CNN_1D=1.532;DP=61;ExcessHet=3.0103;FS=3.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.022;SOR=1.274 GT:AD:DP:GQ:PL 0/1:28,32:60:99:736,0,567 2 32822957 . G A 1114.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;CNN_1D=-2.057;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-1.525;SOR=0.738 GT:AD:DP:GQ:PL 0/1:56,53:109:99:1122,0,1260 2 32855615 . A G 1805.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.259;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.59;SOR=1.197 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1819,183,0 2 32961858 . A G 847.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;CNN_1D=-1.537;DP=95;ExcessHet=3.0103;FS=2.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=2.206;SOR=0.822 GT:AD:DP:GQ:PL 0/1:55,40:95:99:855,0,1161 2 32983526 . C T 1088.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;CNN_1D=-0.708;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=-0.488;SOR=0.612 GT:AD:DP:GQ:PL 0/1:46,46:92:99:1096,0,1101 2 33046014 . GAAGCAGATTCTGGAA G 376.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;CNN_1D=1.242;DP=27;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.37;ReadPosRankSum=1.118;SOR=1.003 GT:AD:DP:GQ:PL 0/1:13,10:23:99:384,0,1889 2 33172679 . G A 866.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;CNN_1D=1.948;DP=57;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=-0.525;SOR=1.148 GT:AD:DP:GQ:PL 0/1:22,35:57:99:874,0,515 2 33488419 . G A 1540.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;CNN_1D=1.345;DP=95;ExcessHet=3.0103;FS=11.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=-1.310;SOR=0.446 GT:AD:DP:GQ:PL 0/1:26,67:93:99:1548,0,506 2 33540248 . G A 2130.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.466;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.96;SOR=0.770 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2144,236,0 2 33572555 . G A 1266.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;CNN_1D=-0.977;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-0.354;SOR=0.720 GT:AD:DP:GQ:PL 0/1:54,57:111:99:1274,0,1288 2 33585796 . T C 4137.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.151;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.40;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4151,452,0 2 33764286 . T C 595.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;CNN_1D=0.880;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-0.191;SOR=0.592 GT:AD:DP:GQ:PL 0/1:33,29:62:99:603,0,691 2 36668395 . T A 1096.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.853;CNN_1D=1.112;DP=74;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=-0.604;SOR=0.856 GT:AD:DP:GQ:PL 0/1:29,45:74:99:1104,0,560 2 36704144 . C T 953.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;CNN_1D=1.778;DP=68;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=1.524;SOR=0.564 GT:AD:DP:GQ:PL 0/1:27,41:68:99:961,0,587 2 36782886 . G A 699.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;CNN_1D=-1.011;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-0.359;SOR=0.722 GT:AD:DP:GQ:PL 0/1:50,36:86:99:707,0,1083 2 36810586 . T C 784.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;CNN_1D=0.731;DP=69;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.688;SOR=0.469 GT:AD:DP:GQ:PL 0/1:31,38:69:99:792,0,708 2 36825137 . G A 2885.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.96;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2899,320,0 2 36825170 . T C 2281.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.409;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.01;SOR=1.270 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2295,228,0 2 37035934 . A G 1660.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;CNN_1D=-4.496;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.748;SOR=0.713 GT:AD:DP:GQ:PL 0/1:93,70:163:99:1668,0,2370 2 37076594 . T C 1046.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;CNN_1D=0.010;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.396;SOR=0.648 GT:AD:DP:GQ:PL 0/1:46,47:93:99:1054,0,942 2 37230728 . T C 565.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;CNN_1D=2.552;DP=47;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=1.271;SOR=0.438 GT:AD:DP:GQ:PL 0/1:20,27:47:99:573,0,409 2 37241050 . G A 849.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;CNN_1D=1.645;DP=64;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=-1.641;SOR=0.484 GT:AD:DP:GQ:PL 0/1:26,37:63:99:857,0,544 2 37276993 . TAA T 75.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;CNN_1D=-3.198;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=1.465;SOR=1.022 GT:AD:DP:GQ:PL 0/1:5,5:10:83:83,0,107 2 37306343 . G A 1890.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.770;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.39;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1904,207,0 2 37317869 . C T 1624.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.661;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.00;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1638,174,0 2 37342007 . G GA 51.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;CNN_1D=-0.373;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.782;SOR=0.616 GT:AD:DP:GQ:PL 0/1:20,5:25:59:59,0,482 2 37406644 . A G 688.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;CNN_1D=0.991;DP=76;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=3.246;SOR=0.635 GT:AD:DP:GQ:PL 0/1:43,33:76:99:696,0,985 2 37406680 . C G 726.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;CNN_1D=1.882;DP=63;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=2.105;SOR=0.533 GT:AD:DP:GQ:PL 0/1:32,31:63:99:734,0,763 2 37456032 . C T 750.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.954;CNN_1D=-1.101;DP=90;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=0.046;SOR=0.507 GT:AD:DP:GQ:PL 0/1:56,34:90:99:758,0,1263 2 37458668 . G A 981.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;CNN_1D=-1.117;DP=92;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-0.737;SOR=0.591 GT:AD:DP:GQ:PL 0/1:52,40:92:99:989,0,1379 2 37505105 . T G 594.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;CNN_1D=1.286;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.675;SOR=0.809 GT:AD:DP:GQ:PL 0/1:29,26:55:99:602,0,636 2 37506939 . A G 887.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;CNN_1D=-0.110;DP=90;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=1.370;SOR=0.635 GT:AD:DP:GQ:PL 0/1:49,41:90:99:895,0,1039 2 37543371 . A G 560.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;CNN_1D=-0.006;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-0.683;SOR=0.570 GT:AD:DP:GQ:PL 0/1:41,27:68:99:568,0,1064 2 37579937 . C T 859.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;CNN_1D=-1.043;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.226;SOR=0.759 GT:AD:DP:GQ:PL 0/1:54,41:95:99:867,0,1216 2 37579971 . C T 1170.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;CNN_1D=-3.876;DP=130;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=0.983;SOR=0.864 GT:AD:DP:GQ:PL 0/1:73,57:130:99:1178,0,1563 2 38178406 . A G 2332.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.872;CNN_1D=3.192;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.44;ReadPosRankSum=-1.204;SOR=0.987 GT:AD:DP:GQ:PL 1/1:2,83:85:99:2346,206,0 2 38179134 . G A 4244.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.397;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.10;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4258,423,0 2 38216766 . C CT 373.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;CNN_1D=-0.118;DP=62;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-0.283;SOR=0.430 GT:AD:DP:GQ:PL 0/1:26,20:46:99:381,0,520 2 38298139 . T C 1535.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.053;CNN_1D=-2.381;DP=137;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.755;SOR=0.598 GT:AD:DP:GQ:PL 0/1:77,60:137:99:1543,0,1884 2 38298150 . A G 4134.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.659;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.74;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4148,417,0 2 38298203 . C G 4501.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.254;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.62;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4515,441,0 2 38302177 . C A 1035.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;CNN_1D=-1.411;DP=94;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.011;SOR=0.506 GT:AD:DP:GQ:PL 0/1:53,41:94:99:1043,0,1409 2 38302390 . G C 1355.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;CNN_1D=-2.844;DP=132;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=1.619;SOR=0.544 GT:AD:DP:GQ:PL 0/1:72,60:132:99:1363,0,1651 2 38536626 . T G 313.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;CNN_1D=2.473;DP=47;ExcessHet=3.0103;FS=2.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=3.402;SOR=0.532 GT:AD:DP:GQ:PL 0/1:30,17:47:99:321,0,699 2 38604351 . A G 848.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;CNN_1D=0.499;DP=68;ExcessHet=3.0103;FS=3.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=0.797;SOR=0.959 GT:AD:DP:GQ:PL 0/1:30,38:68:99:856,0,689 2 39025555 . G A 1085.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;CNN_1D=0.581;DP=90;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=0.692;SOR=0.586 GT:AD:DP:GQ:PL 0/1:42,48:90:99:1093,0,921 2 39050141 . A C 1393.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;CNN_1D=-0.298;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=0.474;SOR=0.696 GT:AD:DP:GQ:PL 0/1:47,58:105:99:1401,0,1142 2 39081247 . T C 397.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;CNN_1D=1.037;DP=41;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.553;SOR=1.071 GT:AD:DP:GQ:PL 0/1:23,18:41:99:405,0,514 2 39082344 . T C 947.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;CNN_1D=-2.023;DP=110;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=0.055;SOR=0.676 GT:AD:DP:GQ:PL 0/1:64,46:110:99:955,0,1516 2 39109558 . G A 292.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;CNN_1D=0.233;DP=46;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=-0.328;SOR=1.038 GT:AD:DP:GQ:PL 0/1:31,15:46:99:300,0,708 2 39187190 . T C 3159.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.148;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.23;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3173,294,0 2 39187519 . A G 947.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.924;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.66;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,29:29:87:961,87,0 2 39507417 . T A 1636.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.133;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.27;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1650,180,0 2 39583446 . A G 2853.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.631;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.72;SOR=1.313 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2867,288,0 2 42165754 . C T 2064.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;CNN_1D=0.624;DP=117;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.65;ReadPosRankSum=0.413;SOR=0.812 GT:AD:DP:GQ:PL 0/1:63,54:117:99:2072,0,3162 2 42165757 . C G 2064.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;CNN_1D=0.343;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=0.646;SOR=0.748 GT:AD:DP:GQ:PL 0/1:65,54:119:99:2072,0,3162 2 42275664 . T C 415.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.420;CNN_1D=0.861;DP=30;ExcessHet=3.0103;FS=3.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=0.523;SOR=1.609 GT:AD:DP:GQ:PL 0/1:17,13:30:99:423,0,417 2 42275819 . T C 2244.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.418;CNN_1D=-3.274;DP=148;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=0.781;SOR=0.828 GT:AD:DP:GQ:PL 0/1:60,88:148:99:2252,0,1258 2 42510018 . A G 2471.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.831;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.76;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2485,266,0 2 42515388 . A G 706.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;CNN_1D=2.476;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=0.411;SOR=0.709 GT:AD:DP:GQ:PL 0/1:24,29:53:99:714,0,530 2 42990101 . G C 1398.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;CNN_1D=-5.134;DP=177;ExcessHet=3.0103;FS=9.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=0.941;SOR=0.440 GT:AD:DP:GQ:PL 0/1:109,68:177:99:1406,0,2738 2 42990336 . T G 5900.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.342;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.06;SOR=0.850 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5914,609,0 2 42990522 . C T 1380.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;CNN_1D=-2.065;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=0.601;SOR=0.694 GT:AD:DP:GQ:PL 0/1:61,59:120:99:1388,0,1406 2 43015704 . T A 1317.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;CNN_1D=-5.164;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-1.906;SOR=0.664 GT:AD:DP:GQ:PL 0/1:97,63:160:99:1325,0,2277 2 43015719 . T C 4842.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.175;CNN_1D=-1.714;DP=178;ExcessHet=3.0103;FS=3.059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.20;ReadPosRankSum=-1.518;SOR=0.277 GT:AD:DP:GQ:PL 1/1:1,177:178:99:4856,501,0 2 43015757 . G A 4116.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.868;CNN_1D=-0.520;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.44;ReadPosRankSum=0.287;SOR=0.866 GT:AD:DP:GQ:PL 1/1:2,148:150:99:4130,400,0 2 43451761 . A C 966.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.621;CNN_1D=1.024;DP=69;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=-0.007;SOR=0.880 GT:AD:DP:GQ:PL 0/1:29,38:67:99:1010,0,646 2 43452183 . A G 715.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.467;CNN_1D=-1.679;DP=86;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-2.284;SOR=0.880 GT:AD:DP:GQ:PL 0/1:56,30:86:99:723,0,1386 2 43625184 . T A 1239.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;CNN_1D=-4.409;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=2.107;SOR=0.699 GT:AD:DP:GQ:PL 0/1:98,55:153:99:1247,0,2249 2 43725965 . C A 462.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;CNN_1D=0.685;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-1.156;SOR=0.678 GT:AD:DP:GQ:PL 0/1:31,22:53:99:470,0,706 2 43793963 . T TAA 194.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;CNN_1D=-0.420;DP=24;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=0.325;SOR=0.223 GT:AD:DP:GQ:PL 0/1:4,8:12:99:202,0,101 2 43797619 . C T 720.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.634;CNN_1D=1.322;DP=62;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.395;SOR=0.446 GT:AD:DP:GQ:PL 0/1:29,33:62:99:728,0,741 2 43801712 . A G 5442.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.894;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.23;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5456,539,0 2 43804229 . T C 3930.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.024;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.48;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3944,414,0 2 43805739 . C T 368.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;CNN_1D=2.815;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=2.220;SOR=0.660 GT:AD:DP:GQ:PL 0/1:19,16:35:99:376,0,482 2 43819139 . A G 697.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;CNN_1D=1.498;DP=66;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=1.871;SOR=0.536 GT:AD:DP:GQ:PL 0/1:33,32:65:99:705,0,733 2 43902511 . G C 1056.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;CNN_1D=0.362;DP=84;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-0.166;SOR=1.147 GT:AD:DP:GQ:PL 0/1:44,40:84:99:1064,0,998 2 43902757 . C G 1624.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;CNN_1D=-0.744;DP=108;ExcessHet=3.0103;FS=2.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=0.458;SOR=1.022 GT:AD:DP:GQ:PL 0/1:40,68:108:99:1632,0,815 2 43903066 . A G 1086.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;CNN_1D=-1.750;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=2.306;SOR=0.699 GT:AD:DP:GQ:PL 0/1:61,51:112:99:1094,0,1417 2 43903354 . T C 1495.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;CNN_1D=-1.560;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-0.557;SOR=0.668 GT:AD:DP:GQ:PL 0/1:53,59:112:99:1503,0,1270 2 43926943 . T A 1343.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;CNN_1D=-3.493;DP=135;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-0.468;SOR=1.022 GT:AD:DP:GQ:PL 0/1:72,63:135:99:1351,0,1591 2 43931176 . T C 424.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;CNN_1D=-0.305;DP=69;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-0.271;SOR=1.032 GT:AD:DP:GQ:PL 0/1:47,22:69:99:432,0,1047 2 43937723 . C CTT 170.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;CNN_1D=-5.291;DP=34;ExcessHet=3.0103;FS=18.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=0.423;SOR=3.092 GT:AD:DP:GQ:PL 0/1:11,16:27:76:178,0,76 2 43973099 . A G 592.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;CNN_1D=-0.248;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-0.142;SOR=0.719 GT:AD:DP:GQ:PL 0/1:38,30:68:99:600,0,854 2 43991357 . A C 467.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;CNN_1D=2.579;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=0.481;SOR=0.509 GT:AD:DP:GQ:PL 0/1:13,18:31:99:475,0,256 2 44004010 . T C 1173.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;CNN_1D=0.174;DP=84;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=-0.984;SOR=0.716 GT:AD:DP:GQ:PL 0/1:31,52:83:99:1181,0,634 2 44021826 . T A 752.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;CNN_1D=0.984;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=1.078;SOR=0.607 GT:AD:DP:GQ:PL 0/1:37,30:67:99:760,0,911 2 44028013 . A T 961.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;CNN_1D=0.829;DP=72;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=-0.896;SOR=0.848 GT:AD:DP:GQ:PL 0/1:27,45:72:99:969,0,518 2 44071639 . C T 734.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;CNN_1D=-0.955;DP=90;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.591;SOR=0.597 GT:AD:DP:GQ:PL 0/1:53,37:90:99:742,0,1279 2 44071743 . A G 658.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;CNN_1D=-2.791;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-3.550;SOR=0.690 GT:AD:DP:GQ:PL 0/1:64,33:97:99:666,0,1456 2 44101537 . A AT 1588.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.922;CNN_1D=0.828;DP=72;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.38;ReadPosRankSum=0.023;SOR=0.454 GT:AD:DP:GQ:PL 0/1:30,41:71:99:1596,0,1495 2 44101538 . C T 1588.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.308;CNN_1D=2.581;DP=70;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.69;ReadPosRankSum=0.297;SOR=0.424 GT:AD:DP:GQ:PL 0/1:30,40:70:99:1596,0,1495 2 44104925 . T C 5026.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.473;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.02;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5040,485,0 2 44209477 . C T 883.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;CNN_1D=-1.771;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-0.239;SOR=0.627 GT:AD:DP:GQ:PL 0/1:51,43:94:99:891,0,1143 2 44502788 . A C 4705.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.293;CNN_1D=-1.900;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.34;ReadPosRankSum=-2.344;SOR=1.031 GT:AD:DP:GQ:PL 1/1:4,162:166:99:4719,399,0 2 44531484 . C T 746.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;CNN_1D=-0.141;DP=72;ExcessHet=3.0103;FS=4.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.760;SOR=1.334 GT:AD:DP:GQ:PL 0/1:42,30:72:99:754,0,1064 2 44547574 . G A 2753.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.143;CNN_1D=2.677;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.68;ReadPosRankSum=-1.398;SOR=0.780 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2767,239,0 2 44569700 . AAAT A 2172.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.738;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.16;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,49:49:99:2186,148,0 2 45171842 . A G 899.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;CNN_1D=-5.553;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=1.036;SOR=0.713 GT:AD:DP:GQ:PL 0/1:91,49:140:99:907,0,2152 2 45640334 . T C 1265.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;CNN_1D=0.775;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=2.161;SOR=0.742 GT:AD:DP:GQ:PL 0/1:40,54:94:99:1273,0,819 2 45647043 . C G 671.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;CNN_1D=1.650;DP=56;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.352;SOR=0.460 GT:AD:DP:GQ:PL 0/1:28,28:56:99:679,0,651 2 46583281 . C T 1964.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.022;CNN_1D=1.251;DP=63;ExcessHet=3.0103;FS=24.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.18;ReadPosRankSum=1.011;SOR=0.326 GT:AD:DP:GQ:PL 0/1:13,50:63:99:1972,0,643 2 46770185 . C T 687.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;CNN_1D=1.677;DP=53;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=0.794;SOR=0.768 GT:AD:DP:GQ:PL 0/1:22,31:53:99:695,0,418 2 46803354 . C T 791.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;CNN_1D=-2.149;DP=98;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=0.511;QD=8.08;ReadPosRankSum=-1.099;SOR=0.913 GT:AD:DP:GQ:PL 0/1:57,41:98:99:799,0,1272 2 46839477 . T C 284.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;CNN_1D=-0.452;DP=41;ExcessHet=3.0103;FS=4.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=-1.197;SOR=0.706 GT:AD:DP:GQ:PL 0/1:27,14:41:99:292,0,706 2 46986416 . A G 3843.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.967;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.19;QD=28.26;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3857,408,0 2 47641559 . TA T 125.01 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.540;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.86;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,7:7:20:98,20,0 2 47703500 . T C 1060.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;CNN_1D=0.942;DP=80;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.433;SOR=0.426 GT:AD:DP:GQ:PL 0/1:40,40:80:99:1068,0,1025 2 47748292 . A G 552.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;CNN_1D=1.437;DP=43;ExcessHet=3.0103;FS=2.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-1.410;SOR=1.214 GT:AD:DP:GQ:PL 0/1:21,22:43:99:560,0,571 2 48010558 . C A 1397.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;CNN_1D=-2.287;DP=121;ExcessHet=3.0103;FS=3.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=1.367;SOR=0.451 GT:AD:DP:GQ:PL 0/1:62,59:121:99:1405,0,1522 2 48018081 . A G 1231.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040;CNN_1D=-2.164;DP=117;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.851;SOR=0.595 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1239,0,1374 2 48023115 . T C 943.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;CNN_1D=-3.321;DP=134;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-0.356;SOR=0.604 GT:AD:DP:GQ:PL 0/1:82,51:133:99:951,0,1849 2 48046012 . TA T 121.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;CNN_1D=-1.455;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=1.699;SOR=0.527 GT:AD:DP:GQ:PL 0/1:52,15:67:99:129,0,1018 2 48602252 . C T 2028.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;CNN_1D=-6.389;DP=189;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=1.362;SOR=0.630 GT:AD:DP:GQ:PL 0/1:98,90:188:99:2036,0,2441 2 48807796 . A C 1399.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;CNN_1D=-2.374;DP=124;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.181;SOR=0.907 GT:AD:DP:GQ:PL 0/1:67,57:124:99:1407,0,1575 2 48807976 . T C 2979.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;CNN_1D=-10.726;DP=262;ExcessHet=3.0103;FS=0.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.284;SOR=0.680 GT:AD:DP:GQ:PL 0/1:134,127:261:99:2987,0,3102 2 48808152 . G C 1721.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;CNN_1D=-2.603;DP=128;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=0.515;SOR=0.628 GT:AD:DP:GQ:PL 0/1:59,68:127:99:1729,0,1442 2 48808594 . C T 2813.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.291;CNN_1D=2.668;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.93;ReadPosRankSum=-0.170;SOR=0.737 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2827,232,0 2 48808882 . T A 2058.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;CNN_1D=-0.422;DP=127;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.21;ReadPosRankSum=2.760;SOR=0.514 GT:AD:DP:GQ:PL 0/1:48,79:127:99:2066,0,1104 2 48808898 . C T 2034.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;CNN_1D=-2.110;DP=133;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=2.569;SOR=0.604 GT:AD:DP:GQ:PL 0/1:51,82:133:99:2042,0,1244 2 48809593 . G T 3133.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.041;CNN_1D=2.440;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.48;ReadPosRankSum=0.229;SOR=0.889 GT:AD:DP:GQ:PL 1/1:3,107:110:99:3147,242,0 2 48822381 . G A 1324.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;CNN_1D=-2.432;DP=121;ExcessHet=3.0103;FS=4.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=1.855;SOR=1.094 GT:AD:DP:GQ:PL 0/1:62,58:120:99:1332,0,1341 2 48873582 . C T 261.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;CNN_1D=0.247;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=1.257;SOR=0.737 GT:AD:DP:GQ:PL 0/1:33,13:46:99:269,0,841 2 48898798 . T A 1579.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.665;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.79;SOR=0.730 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1593,159,0 2 48915871 . A G 1720.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;CNN_1D=-2.028;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=1.072;SOR=0.752 GT:AD:DP:GQ:PL 0/1:60,72:132:99:1728,0,1338 2 48921375 . T C 554.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.186;CNN_1D=1.151;DP=56;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.373;SOR=0.973 GT:AD:DP:GQ:PL 0/1:31,24:55:99:562,0,667 2 48925746 . C T 1571.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.137;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.64;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1585,159,0 2 48982755 . G GGCTGCA 896.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;CNN_1D=0.579;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.49;ReadPosRankSum=-2.814;SOR=0.839 GT:AD:DP:GQ:PL 0/1:21,25:46:99:904,0,1485 2 49003458 . C T 704.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;CNN_1D=-2.066;DP=92;ExcessHet=3.0103;FS=4.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=0.600;SOR=0.715 GT:AD:DP:GQ:PL 0/1:56,35:91:99:712,0,1175 2 49189921 . C T 1363.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;CNN_1D=-3.318;DP=126;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=0.611;SOR=0.821 GT:AD:DP:GQ:PL 0/1:67,59:126:99:1371,0,1658 2 49191041 . C T 1213.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;CNN_1D=-1.936;DP=116;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=0.354;SOR=0.613 GT:AD:DP:GQ:PL 0/1:62,54:116:99:1221,0,1515 2 50201110 . A G 3091.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.360;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.35;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3105,338,0 2 53955850 . C T 1504.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.875;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.35;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1518,165,0 2 54035447 . A G 2798.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.570;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.55;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2812,294,0 2 54115904 . A G 2010.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.044;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.71;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2024,209,0 2 54120025 . A T 3517.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.480;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.91;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3531,378,0 2 54120820 . G A 1161.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.238;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.03;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1175,120,0 2 54125495 . T C 1266.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.799;CNN_1D=4.045;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.52;ReadPosRankSum=1.056;SOR=0.324 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1280,102,0 2 54127041 . C T 2185.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.385;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.31;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2199,240,0 2 54133744 . T C 2390.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.224;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.45;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2404,251,0 2 54200930 . G A 469.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.801;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.59;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,17:17:51:483,51,0 2 54482964 . C T 1724.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;CNN_1D=-4.353;DP=168;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=1.965;SOR=0.614 GT:AD:DP:GQ:PL 0/1:95,73:168:99:1732,0,2353 2 54587596 . C T 1681.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;CNN_1D=-4.389;DP=137;ExcessHet=3.0103;FS=9.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=-0.715;SOR=1.266 GT:AD:DP:GQ:PL 0/1:68,69:137:99:1689,0,1528 2 54858511 . C T 1742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;CNN_1D=-5.497;DP=164;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=2.032;SOR=0.876 GT:AD:DP:GQ:PL 0/1:89,75:164:99:1750,0,2044 2 54886347 . G A 1658.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;CNN_1D=-4.698;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-0.249;SOR=0.651 GT:AD:DP:GQ:PL 0/1:79,73:152:99:1666,0,1697 2 55040426 . A G 824.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;CNN_1D=-1.361;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=1.437;SOR=0.663 GT:AD:DP:GQ:PL 0/1:50,41:91:99:832,0,1077 2 55071185 . C G 500.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;CNN_1D=1.474;DP=48;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=-0.950;SOR=0.402 GT:AD:DP:GQ:PL 0/1:23,25:48:99:508,0,544 2 55186394 . A C 2359.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.905;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.43;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2373,258,0 2 55214618 . A C 2319.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.606;CNN_1D=3.679;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.73;ReadPosRankSum=0.289;SOR=0.396 GT:AD:DP:GQ:PL 1/1:1,77:78:99:2333,195,0 2 55277226 . C T 747.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;CNN_1D=1.533;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=1.640;SOR=0.736 GT:AD:DP:GQ:PL 0/1:29,32:61:99:755,0,630 2 55404925 . C T 1125.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;CNN_1D=-1.402;DP=104;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-0.237;SOR=0.488 GT:AD:DP:GQ:PL 0/1:52,52:104:99:1133,0,1232 2 55407754 . C T 4038.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.028;CNN_1D=1.037;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.04;ReadPosRankSum=0.830;SOR=0.252 GT:AD:DP:GQ:PL 1/1:1,143:144:99:4052,391,0 2 55436934 . G A 303.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;CNN_1D=-1.433;DP=41;ExcessHet=3.0103;FS=10.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=-0.575;SOR=2.584 GT:AD:DP:GQ:PL 0/1:28,13:41:99:311,0,648 2 55470115 . C T 2232.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.294;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.76;QD=27.22;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2246,245,0 2 55481322 . T A 1415.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678;CNN_1D=0.929;DP=95;ExcessHet=3.0103;FS=4.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=-0.641;SOR=0.364 GT:AD:DP:GQ:PL 0/1:34,61:95:99:1423,0,794 2 55490819 . G T 2626.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.320;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.26;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2640,298,0 2 55566612 . C G 710.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;CNN_1D=2.418;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=0.342;SOR=0.786 GT:AD:DP:GQ:PL 0/1:17,29:46:99:718,0,339 2 55576720 . C T 381.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;CNN_1D=0.359;DP=55;ExcessHet=3.0103;FS=6.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.880;SOR=0.592 GT:AD:DP:GQ:PL 0/1:37,18:55:99:389,0,982 2 55589434 . T A 566.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;CNN_1D=2.248;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=1.525;SOR=0.742 GT:AD:DP:GQ:PL 0/1:21,24:45:99:574,0,447 2 55599655 . G A 363.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;CNN_1D=0.051;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-1.332;SOR=0.578 GT:AD:DP:GQ:PL 0/1:31,20:51:99:371,0,741 2 55771161 . A G 3947.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.337;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.80;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3961,426,0 2 55805440 . T C 2524.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.220;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.14;SOR=0.953 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2538,278,0 2 55883317 . G T 2020.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.005;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.15;SOR=1.230 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2034,201,0 2 55912120 . T C 502.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;CNN_1D=0.607;DP=56;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-1.193;SOR=0.859 GT:AD:DP:GQ:PL 0/1:32,24:56:99:510,0,700 2 56094201 . GA G 548.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;CNN_1D=0.217;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-0.920;SOR=0.687 GT:AD:DP:GQ:PL 0/1:28,21:49:99:556,0,793 2 56144930 . T C 1632.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;CNN_1D=-0.519;DP=117;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=1.166;SOR=0.532 GT:AD:DP:GQ:PL 0/1:52,65:117:99:1640,0,1246 2 56411817 . C T 881.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;CNN_1D=-0.454;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-0.005;SOR=0.601 GT:AD:DP:GQ:PL 0/1:41,41:82:99:889,0,984 2 58316814 . A G 570.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;CNN_1D=1.875;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.351;SOR=0.859 GT:AD:DP:GQ:PL 0/1:24,24:48:99:578,0,546 2 58388696 . A G 806.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;CNN_1D=-0.183;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=-0.375;SOR=0.749 GT:AD:DP:GQ:PL 0/1:41,35:76:99:814,0,998 2 60687959 . A G 1716.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;CNN_1D=-3.346;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-1.040;SOR=0.658 GT:AD:DP:GQ:PL 0/1:69,72:141:99:1724,0,1578 2 61009813 . T TTA 735.86 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.892;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.45;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,22:22:66:750,66,0 2 61009909 . C T 983.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.386;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.31;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,36:36:99:997,108,0 2 61175312 . T C 2273.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.195;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.41;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2287,240,0 2 61244889 . G C 665.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;CNN_1D=2.476;DP=44;ExcessHet=3.0103;FS=2.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=0.567;SOR=0.307 GT:AD:DP:GQ:PL 0/1:14,30:44:99:673,0,276 2 61244943 . A T 776.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;CNN_1D=0.911;DP=60;ExcessHet=3.0103;FS=5.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-0.045;SOR=0.619 GT:AD:DP:GQ:PL 0/1:25,35:60:99:784,0,503 2 61304271 . A G 976.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;CNN_1D=1.432;DP=73;ExcessHet=3.0103;FS=2.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.840;SOR=1.112 GT:AD:DP:GQ:PL 0/1:35,38:73:99:984,0,873 2 61390338 . G A 1330.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;CNN_1D=-1.792;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=-0.292;SOR=0.705 GT:AD:DP:GQ:PL 0/1:49,61:110:99:1338,0,1117 2 61415492 . A G 1261.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;CNN_1D=-3.356;DP=124;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=0.325;SOR=0.510 GT:AD:DP:GQ:PL 0/1:67,56:123:99:1269,0,1675 2 61522123 . T C 2001.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.656;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.00;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2015,207,0 2 61552595 . A G 430.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;CNN_1D=2.262;DP=38;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-1.592;SOR=0.850 GT:AD:DP:GQ:PL 0/1:19,19:38:99:438,0,416 2 61575090 . T C 1183.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.947;CNN_1D=-2.158;DP=116;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=0.730;SOR=0.884 GT:AD:DP:GQ:PL 0/1:67,49:116:99:1191,0,1433 2 61575308 . A G 4816.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.911;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.67;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4830,504,0 2 61577435 . T C 436.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;CNN_1D=2.039;DP=47;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=2.795;SOR=0.507 GT:AD:DP:GQ:PL 0/1:25,22:47:99:444,0,564 2 61726050 . TA T 86.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;CNN_1D=-1.367;DP=46;ExcessHet=3.0103;FS=3.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-2.523;SOR=0.223 GT:AD:DP:GQ:PL 0/1:37,8:45:94:94,0,805 2 62066927 . A G 4547.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.368;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.73;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4561,491,0 2 62067006 . A C 1950.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;CNN_1D=-2.590;DP=144;ExcessHet=3.0103;FS=2.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=0.386;SOR=0.800 GT:AD:DP:GQ:PL 0/1:64,80:144:99:1958,0,1517 2 62067099 . T G 1539.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;CNN_1D=-3.061;DP=125;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=0.291;SOR=0.933 GT:AD:DP:GQ:PL 0/1:62,63:125:99:1547,0,1544 2 62067433 . T C 1006.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;CNN_1D=-1.168;DP=97;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.931;SOR=0.538 GT:AD:DP:GQ:PL 0/1:53,44:97:99:1014,0,1237 2 62081012 . A C 2123.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.593;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.69;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2137,222,0 2 62729674 . T C 1243.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.231;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.25;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1257,132,0 2 62733253 . C T 1246.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;CNN_1D=0.410;DP=90;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=1.483;SOR=0.882 GT:AD:DP:GQ:PL 0/1:38,52:90:99:1254,0,783 2 63176139 . A C 931.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;CNN_1D=-2.176;DP=114;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=0.704;SOR=0.736 GT:AD:DP:GQ:PL 0/1:68,45:113:99:939,0,1443 2 64069311 . G C 2639.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.986;CNN_1D=2.604;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.93;ReadPosRankSum=-1.291;SOR=0.287 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2653,258,0 2 64685430 . T C 1120.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;CNN_1D=-1.201;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=0.167;SOR=0.685 GT:AD:DP:GQ:PL 0/1:55,50:105:99:1128,0,1315 2 64780144 . A G 1271.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;CNN_1D=-2.435;DP=120;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=-1.153;SOR=0.797 GT:AD:DP:GQ:PL 0/1:70,50:120:99:1279,0,1827 2 65296798 . G A 1809.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;CNN_1D=-3.079;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-0.695;SOR=0.693 GT:AD:DP:GQ:PL 0/1:71,75:146:99:1817,0,1668 2 65298839 . A G 1593.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;CNN_1D=-3.147;DP=138;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-0.166;SOR=0.537 GT:AD:DP:GQ:PL 0/1:69,69:138:99:1601,0,1652 2 65481008 . A C 576.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;CNN_1D=1.012;DP=61;ExcessHet=3.0103;FS=3.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.886;SOR=1.258 GT:AD:DP:GQ:PL 0/1:34,27:61:99:584,0,764 2 65540905 . C G 2583.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;CNN_1D=-9.466;DP=253;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=-1.725;SOR=0.643 GT:AD:DP:GQ:PL 0/1:138,114:252:99:2591,0,3321 2 65571889 . G C 656.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;CNN_1D=-1.374;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-2.434;SOR=0.646 GT:AD:DP:GQ:PL 0/1:51,29:80:99:664,0,1274 2 65571997 . A G 1474.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;CNN_1D=-1.774;DP=113;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-1.133;SOR=0.571 GT:AD:DP:GQ:PL 0/1:48,65:113:99:1482,0,1008 2 67630980 . G A 3025.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.017;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.95;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3039,303,0 2 67631831 . G A 1478.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;CNN_1D=-2.126;DP=121;ExcessHet=3.0103;FS=6.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-0.851;SOR=0.826 GT:AD:DP:GQ:PL 0/1:59,62:121:99:1486,0,1445 2 67632125 . C T 2391.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.758;CNN_1D=4.098;DP=74;ExcessHet=3.0103;FS=3.129;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=32.31;ReadPosRankSum=-1.358;SOR=0.353 GT:AD:DP:GQ:PL 1/1:1,73:74:99:2405,181,0 2 68270068 . A G 496.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;CNN_1D=1.473;DP=36;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=49.71;MQRankSum=0.974;QD=13.79;ReadPosRankSum=-0.524;SOR=0.495 GT:AD:DP:GQ:PL 0/1:17,19:36:99:504,0,353 2 68385097 . A G 1111.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;CNN_1D=-0.236;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=0.363;SOR=0.693 GT:AD:DP:GQ:PL 0/1:46,46:92:99:1119,0,1045 2 68388823 . A G 677.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;CNN_1D=1.901;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=0.376;SOR=0.673 GT:AD:DP:GQ:PL 0/1:24,28:52:99:685,0,506 2 68415767 . G A 666.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;CNN_1D=-0.761;DP=85;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=0.999;SOR=0.561 GT:AD:DP:GQ:PL 0/1:49,35:84:99:674,0,1119 2 68546374 . T C 1092.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.773;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.63;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1106,122,0 2 68607947 . G T 1047.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;CNN_1D=-3.082;DP=124;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-0.318;SOR=0.777 GT:AD:DP:GQ:PL 0/1:72,51:123:99:1055,0,1798 2 68622914 . G A 3792.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.042;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.73;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3806,396,0 2 68622952 . G C 1085.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;CNN_1D=-0.001;DP=85;ExcessHet=3.0103;FS=2.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=-1.386;SOR=1.038 GT:AD:DP:GQ:PL 0/1:41,44:85:99:1093,0,1059 2 68753240 . T A 1332.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;CNN_1D=-1.841;DP=121;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-1.174;SOR=0.622 GT:AD:DP:GQ:PL 0/1:59,61:120:99:1340,0,1237 2 68765205 . C T 1020.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;CNN_1D=-2.954;DP=116;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-0.926;SOR=0.641 GT:AD:DP:GQ:PL 0/1:70,46:116:99:1028,0,1675 2 68794528 . G T 463.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;CNN_1D=1.581;DP=49;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=1.356;SOR=0.882 GT:AD:DP:GQ:PL 0/1:29,20:49:99:471,0,667 2 68873124 . G A 2577.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;CNN_1D=-6.369;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=0.746;SOR=0.673 GT:AD:DP:GQ:PL 0/1:102,109:211:99:2585,0,2285 2 68882468 . T C 2125.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;CNN_1D=-6.850;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=0.017;SOR=0.693 GT:AD:DP:GQ:PL 0/1:102,89:191:99:2133,0,2572 2 69098495 . C T 1112.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;CNN_1D=-0.629;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=1.280;SOR=0.743 GT:AD:DP:GQ:PL 0/1:47,46:93:99:1120,0,1116 2 69300243 . G A 749.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;CNN_1D=2.578;DP=57;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=1.531;SOR=0.492 GT:AD:DP:GQ:PL 0/1:26,31:57:99:757,0,531 2 69553375 . GA G 637.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;CNN_1D=0.146;DP=60;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.405;SOR=0.906 GT:AD:DP:GQ:PL 0/1:23,33:56:99:645,0,359 2 69573029 . T C 593.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;CNN_1D=2.977;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.96;ReadPosRankSum=-0.549;SOR=0.527 GT:AD:DP:GQ:PL 0/1:9,26:35:99:601,0,129 2 69659126 . A T 880.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;CNN_1D=0.186;DP=78;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.065;SOR=0.618 GT:AD:DP:GQ:PL 0/1:36,42:78:99:888,0,853 2 69741609 . C T 527.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;CNN_1D=3.219;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=-0.454;SOR=0.593 GT:AD:DP:GQ:PL 0/1:14,23:37:99:535,0,292 2 69741753 . CTGT C 2234.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;CNN_1D=-0.015;DP=113;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.88;ReadPosRankSum=0.818;SOR=0.584 GT:AD:DP:GQ:PL 0/1:48,59:107:99:2242,0,2092 2 69741854 . T G 2581.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.742;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.36;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2595,273,0 2 70315448 . A T 1457.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;CNN_1D=-2.278;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-1.092;SOR=0.662 GT:AD:DP:GQ:PL 0/1:61,60:121:99:1465,0,1595 2 70456452 . T TA 34.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;CNN_1D=-1.744;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.241;SOR=0.846 GT:AD:DP:GQ:PL 0/1:49,8:57:42:42,0,1086 2 70677994 . G A 1372.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;CNN_1D=-2.299;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-0.515;SOR=0.687 GT:AD:DP:GQ:PL 0/1:56,62:118:99:1380,0,1079 2 71004492 . T C 380.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;CNN_1D=2.094;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.000;SOR=0.789 GT:AD:DP:GQ:PL 0/1:21,11:32:99:388,0,1073 2 71004494 . A T 380.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;CNN_1D=2.217;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.139;SOR=0.789 GT:AD:DP:GQ:PL 0/1:21,11:32:99:388,0,1073 2 71012604 . G A 5017.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;CNN_1D=-2.303;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.87;ReadPosRankSum=0.075;SOR=0.914 GT:AD:DP:GQ:PL 1/1:2,178:180:99:5031,491,0 2 71012734 . C G 4817.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.467;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.67;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4831,504,0 2 71043461 . C T 2095.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;CNN_1D=-2.749;DP=152;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=1.045;SOR=0.610 GT:AD:DP:GQ:PL 0/1:67,84:151:99:2103,0,1539 2 71044211 . C T 2281.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;CNN_1D=-5.147;DP=176;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=-2.000;SOR=0.574 GT:AD:DP:GQ:PL 0/1:76,100:176:99:2289,0,1689 2 71058226 . C T 2030.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;CNN_1D=-4.839;DP=175;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=1.187;SOR=0.782 GT:AD:DP:GQ:PL 0/1:79,94:173:99:2038,0,1595 2 71058835 . A G 1679.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;CNN_1D=-4.686;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-1.471;SOR=0.721 GT:AD:DP:GQ:PL 0/1:80,79:159:99:1687,0,1787 2 71061108 . G A 1623.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;CNN_1D=-1.195;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=1.024;SOR=0.744 GT:AD:DP:GQ:PL 0/1:52,69:121:99:1631,0,1154 2 71062833 . G GC 5374.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.052;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.86;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,144:144:99:5388,436,0 2 71163173 . C T 3560.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;CNN_1D=0.557;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.97;ReadPosRankSum=0.755;SOR=0.788 GT:AD:DP:GQ:PL 1/1:2,130:132:99:3574,345,0 2 71211815 . G A 1225.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;CNN_1D=-2.557;DP=117;ExcessHet=3.0103;FS=3.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=-0.974;SOR=0.431 GT:AD:DP:GQ:PL 0/1:63,54:117:99:1233,0,1644 2 71211989 . A G 2994.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;CNN_1D=-8.438;DP=241;ExcessHet=3.0103;FS=6.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-1.591;SOR=1.058 GT:AD:DP:GQ:PL 0/1:121,120:241:99:3002,0,2843 2 71212129 . A T 3242.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;CNN_1D=-10.302;DP=267;ExcessHet=3.0103;FS=3.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=1.131;SOR=0.899 GT:AD:DP:GQ:PL 0/1:131,136:267:99:3250,0,2931 2 71212405 . T C 890.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;CNN_1D=-0.024;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=-2.486;SOR=0.591 GT:AD:DP:GQ:PL 0/1:28,39:67:99:898,0,503 2 71221822 . A G 959.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;CNN_1D=-2.595;DP=110;ExcessHet=3.0103;FS=2.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=0.767;SOR=0.825 GT:AD:DP:GQ:PL 0/1:64,46:110:99:967,0,1489 2 71304738 . G A 1508.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.134;CNN_1D=-2.962;DP=125;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-0.683;SOR=0.804 GT:AD:DP:GQ:PL 0/1:51,73:124:99:1516,0,1209 2 71305456 . C T 614.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.514;CNN_1D=1.523;DP=47;ExcessHet=3.0103;FS=6.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-2.645;SOR=0.480 GT:AD:DP:GQ:PL 0/1:21,26:47:99:622,0,548 2 71351403 . C A 1322.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;CNN_1D=-2.347;DP=119;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.274;SOR=0.614 GT:AD:DP:GQ:PL 0/1:61,58:119:99:1330,0,1434 2 71351487 . G A 1930.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;CNN_1D=-4.155;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=0.676;SOR=0.688 GT:AD:DP:GQ:PL 0/1:75,81:156:99:1938,0,1728 2 71360282 . G A 848.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;CNN_1D=-0.904;DP=97;ExcessHet=3.0103;FS=2.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=1.276;SOR=0.450 GT:AD:DP:GQ:PL 0/1:57,40:97:99:856,0,1287 2 71417065 . G T 4154.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.402;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.15;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4168,459,0 2 71633275 . T C 1236.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.587;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.09;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1250,132,0 2 71633389 . C T 767.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.742;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.45;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,29:29:87:781,87,0 2 71738987 . C T 1720.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;CNN_1D=-5.608;DP=165;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=1.441;SOR=0.632 GT:AD:DP:GQ:PL 0/1:88,77:165:99:1728,0,2172 2 71780215 . T C 4160.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.082;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.11;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4174,444,0 2 71795152 . A T 1903.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;CNN_1D=-3.764;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=0.781;SOR=0.740 GT:AD:DP:GQ:PL 0/1:69,84:153:99:1911,0,1543 2 71838597 . C A 2827.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.229;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.76;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2841,285,0 2 73339708 . G A 5322.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.835;CNN_1D=-1.588;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.08;ReadPosRankSum=-0.350;SOR=0.260 GT:AD:DP:GQ:PL 1/1:1,182:183:99:5336,509,0 2 73613031 . TGGAGGA T,TGGAGGAGGA 1452.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.773;CNN_1D=-0.257;DP=76;ExcessHet=3.0103;FS=4.020;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.74;ReadPosRankSum=1.277;SOR=1.034 GT:AD:DP:GQ:PL 1/2:7,28,35:70:99:1469,835,1508,644,0,1040 2 73651967 . C T 1205.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;CNN_1D=-1.597;DP=109;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.385;SOR=0.547 GT:AD:DP:GQ:PL 0/1:57,52:109:99:1213,0,1279 2 73675227 . T TCTC 3328.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;CNN_1D=-2.368;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.49;ReadPosRankSum=-0.286;SOR=0.734 GT:AD:DP:GQ:PL 0/1:66,82:148:99:3336,0,2901 2 73675669 . T G 4417.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.334;CNN_1D=0.610;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.46;ReadPosRankSum=0.454;SOR=0.298 GT:AD:DP:GQ:PL 1/1:1,144:145:99:4431,398,0 2 73675844 . C T 1710.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;CNN_1D=-4.849;DP=162;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=1.804;SOR=0.616 GT:AD:DP:GQ:PL 0/1:87,75:162:99:1718,0,2024 2 73675903 . C T 1749.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;CNN_1D=-4.311;DP=150;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=1.455;SOR=0.759 GT:AD:DP:GQ:PL 0/1:76,74:150:99:1757,0,1857 2 73677833 . A G 1471.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;CNN_1D=-2.856;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.577;SOR=0.665 GT:AD:DP:GQ:PL 0/1:67,60:127:99:1479,0,1595 2 73677898 . G C 1613.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;CNN_1D=-3.283;DP=138;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=0.360;SOR=0.728 GT:AD:DP:GQ:PL 0/1:72,66:138:99:1621,0,1769 2 73679013 . A G 1764.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;CNN_1D=-3.840;DP=155;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=0.855;SOR=0.607 GT:AD:DP:GQ:PL 0/1:82,73:155:99:1772,0,2032 2 73679280 . A G 2205.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;CNN_1D=-5.885;DP=182;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=-1.214;SOR=0.647 GT:AD:DP:GQ:PL 0/1:88,94:182:99:2213,0,2012 2 73679866 . T C 1329.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.141;CNN_1D=-0.755;DP=111;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=2.400;SOR=0.816 GT:AD:DP:GQ:PL 0/1:62,48:110:99:1337,0,1556 2 73679990 . T A 1948.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;CNN_1D=-5.489;DP=184;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=0.772;SOR=0.678 GT:AD:DP:GQ:PL 0/1:98,85:183:99:1956,0,2379 2 73680508 . G C 1759.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;CNN_1D=-3.340;DP=145;ExcessHet=3.0103;FS=2.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=1.009;SOR=0.863 GT:AD:DP:GQ:PL 0/1:74,71:145:99:1767,0,1705 2 73717567 . G T 1198.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;CNN_1D=-0.859;DP=107;ExcessHet=3.0103;FS=4.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=1.219;SOR=0.671 GT:AD:DP:GQ:PL 0/1:55,52:107:99:1206,0,1358 2 73717656 . A G 1694.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;CNN_1D=-2.753;DP=134;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=-0.312;SOR=0.623 GT:AD:DP:GQ:PL 0/1:65,69:134:99:1702,0,1658 2 73746923 . C T 441.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;CNN_1D=2.105;DP=39;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-2.059;SOR=0.352 GT:AD:DP:GQ:PL 0/1:19,19:38:99:449,0,501 2 73777400 . A G 632.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.693;CNN_1D=0.969;DP=55;ExcessHet=3.0103;FS=2.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=-1.656;SOR=1.144 GT:AD:DP:GQ:PL 0/1:31,24:55:99:640,0,756 2 73828538 . G A 936.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;CNN_1D=-0.254;DP=86;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.393;SOR=0.529 GT:AD:DP:GQ:PL 0/1:43,43:86:99:944,0,959 2 73829372 . C T 707.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;CNN_1D=-1.404;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-1.100;SOR=0.751 GT:AD:DP:GQ:PL 0/1:46,34:80:99:715,0,1128 2 73868328 . A G 3062.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;CNN_1D=-10.433;DP=261;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.071;QD=11.78;ReadPosRankSum=0.359;SOR=0.612 GT:AD:DP:GQ:PL 0/1:134,126:260:99:3070,0,3225 2 73957124 . A G 530.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;CNN_1D=2.929;DP=43;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=0.191;SOR=0.512 GT:AD:DP:GQ:PL 0/1:18,24:42:99:538,0,374 2 74007136 . T C 1971.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;CNN_1D=-3.209;DP=156;ExcessHet=3.0103;FS=3.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=1.001;SOR=0.774 GT:AD:DP:GQ:PL 0/1:73,81:154:99:1979,0,1735 2 74128433 . C T 939.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;CNN_1D=0.978;DP=69;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=-0.225;SOR=0.636 GT:AD:DP:GQ:PL 0/1:29,40:69:99:947,0,641 2 74135797 . T C 997.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;CNN_1D=1.925;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.576;SOR=0.739 GT:AD:DP:GQ:PL 0/1:22,43:65:99:1005,0,398 2 74135898 . A G 715.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;CNN_1D=2.573;DP=50;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=0.980;SOR=0.818 GT:AD:DP:GQ:PL 0/1:19,31:50:99:723,0,440 2 74300717 . T C 523.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;CNN_1D=-1.270;DP=82;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-1.087;SOR=0.606 GT:AD:DP:GQ:PL 0/1:53,29:82:99:531,0,1184 2 74489323 . C T 1255.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;CNN_1D=-3.061;DP=126;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=-2.073;SOR=0.585 GT:AD:DP:GQ:PL 0/1:65,61:126:99:1263,0,1424 2 74725144 . T C 1528.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;CNN_1D=-2.821;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-0.153;SOR=0.735 GT:AD:DP:GQ:PL 0/1:69,64:133:99:1536,0,1589 2 74729881 . G T 1317.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;CNN_1D=-1.398;DP=101;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.757;SOR=0.508 GT:AD:DP:GQ:PL 0/1:44,57:101:99:1325,0,935 2 75113657 . C T 4245.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.141;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.79;QD=28.88;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4259,440,0 2 75113789 . C G 3032.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.044;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.60;SOR=1.189 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3046,318,0 2 75115108 . A G 3731.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.924;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.15;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3745,384,0 2 75185856 . G T 800.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;CNN_1D=0.312;DP=70;ExcessHet=3.0103;FS=6.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-0.053;SOR=0.591 GT:AD:DP:GQ:PL 0/1:33,37:70:99:808,0,764 2 75425728 . A G 1828.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;CNN_1D=-3.930;DP=158;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-0.616;SOR=0.494 GT:AD:DP:GQ:PL 0/1:82,74:156:99:1836,0,1950 2 75720664 . G A 1299.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.187;CNN_1D=-2.443;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-2.037;SOR=0.684 GT:AD:DP:GQ:PL 0/1:54,63:117:99:1307,0,1231 2 79254261 . T C 3721.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.758;CNN_1D=0.628;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQRankSum=-0.061;QD=27.16;ReadPosRankSum=-1.795;SOR=0.973 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3735,361,0 2 79312414 . G A 1206.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260;CNN_1D=-0.342;DP=99;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=0.439;SOR=0.729 GT:AD:DP:GQ:PL 0/1:45,54:99:99:1214,0,1146 2 79350347 . A G 3069.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.847;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.95;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3083,317,0 2 79384708 . C T 1400.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;CNN_1D=-3.846;DP=139;ExcessHet=3.0103;FS=4.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.687;SOR=0.495 GT:AD:DP:GQ:PL 0/1:72,67:139:99:1408,0,1709 2 79385786 . T C 729.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;CNN_1D=-11.545;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-8.566;QD=4.96;ReadPosRankSum=2.107;SOR=0.765 GT:AD:DP:GQ:PL 0/1:120,27:147:99:737,0,5625 2 79385787 . G A 729.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;CNN_1D=-11.462;DP=146;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-8.732;QD=5.00;ReadPosRankSum=2.302;SOR=0.846 GT:AD:DP:GQ:PL 0/1:120,26:146:99:737,0,5625 2 79385823 . T G 108.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;CNN_1D=-15.160;DP=166;ExcessHet=3.0103;FS=4.551;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-10.226;QD=0.65;ReadPosRankSum=-2.194;SOR=1.192 GT:AD:DP:GQ:PL 0/1:145,21:166:99:116,0,3515 2 80101321 . T G 1642.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;CNN_1D=-4.152;DP=145;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.061;SOR=0.907 GT:AD:DP:GQ:PL 0/1:74,71:145:99:1650,0,1694 2 84756049 . G A 2735.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.201;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.41;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2749,279,0 2 84771480 . G A 1789.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.508;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.40;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1803,189,0 2 84771567 . C T 1395.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.226;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.06;SOR=1.298 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1409,144,0 2 84800605 . C A 1377.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.560;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.30;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1391,141,0 2 84848596 . G A 802.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;CNN_1D=-0.058;DP=84;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-1.863;SOR=0.864 GT:AD:DP:GQ:PL 0/1:48,36:84:99:810,0,1214 2 84896628 . G A 2053.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.174;CNN_1D=2.882;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.51;ReadPosRankSum=-0.189;SOR=1.609 GT:AD:DP:GQ:PL 1/1:2,70:72:99:2067,167,0 2 84897517 . A G 3005.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.078;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=0.770 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3019,318,0 2 85133216 . G A 1185.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.699;CNN_1D=-0.699;DP=105;ExcessHet=3.0103;FS=2.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.112;SOR=0.462 GT:AD:DP:GQ:PL 0/1:51,54:105:99:1193,0,1271 2 85531116 . C T 1353.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;CNN_1D=-4.354;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.372;SOR=0.720 GT:AD:DP:GQ:PL 0/1:75,64:139:99:1361,0,1568 2 85549868 . A G 1288.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;CNN_1D=-0.005;DP=97;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-1.231;SOR=0.875 GT:AD:DP:GQ:PL 0/1:59,38:97:99:1296,0,2806 2 85549874 . A G 1229.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;CNN_1D=0.277;DP=90;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=-0.528;SOR=0.979 GT:AD:DP:GQ:PL 0/1:57,33:90:99:1237,0,2772 2 85553784 . C T 1684.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.252;CNN_1D=-1.897;DP=123;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=0.054;SOR=0.774 GT:AD:DP:GQ:PL 0/1:51,72:123:99:1692,0,1265 2 85554080 . G A 2117.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;CNN_1D=-4.506;DP=172;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=1.091;SOR=0.748 GT:AD:DP:GQ:PL 0/1:80,91:171:99:2125,0,1837 2 85570849 . C T 438.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541;CNN_1D=-13.487;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-10.721;QD=3.75;ReadPosRankSum=-1.149;SOR=0.635 GT:AD:DP:GQ:PL 0/1:99,18:117:99:446,0,5256 2 85570857 . G A 438.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;CNN_1D=-12.925;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-10.815;QD=3.69;ReadPosRankSum=0.126;SOR=0.674 GT:AD:DP:GQ:PL 0/1:101,18:119:99:446,0,5236 2 85571710 . A G 3014.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.887;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.57;QD=29.26;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3028,309,0 2 85598627 . C T 1025.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;CNN_1D=-1.564;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.818;SOR=0.735 GT:AD:DP:GQ:PL 0/1:56,47:103:99:1033,0,1200 2 85622059 . T C 1275.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;CNN_1D=-2.188;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=0.279;SOR=0.695 GT:AD:DP:GQ:PL 0/1:61,61:122:99:1283,0,1356 2 85625222 . T G 1617.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;CNN_1D=-3.395;DP=143;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-1.260;SOR=0.798 GT:AD:DP:GQ:PL 0/1:75,68:143:99:1625,0,1667 2 85781318 . T G 6002.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.561;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.05;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6016,642,0 2 85888620 . C T 544.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;CNN_1D=0.592;DP=55;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-0.362;SOR=1.101 GT:AD:DP:GQ:PL 0/1:28,27:55:99:552,0,613 2 85894308 . G T 355.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;CNN_1D=0.442;DP=43;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=0.153;SOR=1.087 GT:AD:DP:GQ:PL 0/1:28,15:43:99:363,0,705 2 85895338 . T G 612.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;CNN_1D=2.050;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.71;ReadPosRankSum=0.268;SOR=0.859 GT:AD:DP:GQ:PL 0/1:13,26:39:99:620,0,270 2 85924729 . C T 1200.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;CNN_1D=0.441;DP=92;ExcessHet=3.0103;FS=2.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=1.771;SOR=0.523 GT:AD:DP:GQ:PL 0/1:39,53:92:99:1208,0,853 2 85925680 . T G 1576.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;CNN_1D=-6.893;DP=184;ExcessHet=3.0103;FS=5.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=1.627;SOR=0.628 GT:AD:DP:GQ:PL 0/1:108,76:184:99:1584,0,2592 2 85981761 . T C 2886.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.869;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.75;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2900,291,0 2 86315741 . C T 2181.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.241;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.08;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2195,225,0 2 86317037 . G C 1747.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.951;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.12;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1761,174,0 2 86385728 . C T 622.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;CNN_1D=1.942;DP=50;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-0.634;SOR=0.527 GT:AD:DP:GQ:PL 0/1:20,30:50:99:630,0,392 2 86393770 . TA T 68.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;CNN_1D=-0.920;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-1.336;SOR=0.464 GT:AD:DP:GQ:PL 0/1:44,9:53:76:76,0,935 2 86400824 . G A 1385.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.432;CNN_1D=2.830;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=-1.931;SOR=0.729 GT:AD:DP:GQ:PL 1/1:2,55:57:89:1399,89,0 2 86481835 . C T 1333.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.871;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.36;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1347,141,0 2 86683642 . A G 1848.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.497;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.43;SOR=1.000 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1862,194,0 2 86691250 . G A 2924.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.643;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.59;SOR=0.770 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2938,318,0 2 86693826 . T C 3120.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.093;CNN_1D=2.536;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.16;ReadPosRankSum=1.381;SOR=0.791 GT:AD:DP:GQ:PL 1/1:2,105:107:99:3134,272,0 2 86756381 . T G 3922.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.586;CNN_1D=1.144;DP=143;ExcessHet=3.0103;FS=3.102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.43;ReadPosRankSum=-0.327;SOR=0.313 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3936,390,0 2 86947783 . C T 761.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;CNN_1D=-1.770;DP=65;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=54.45;MQRankSum=-2.013;QD=11.72;ReadPosRankSum=2.635;SOR=0.833 GT:AD:DP:GQ:PL 0/1:30,35:65:99:769,0,694 2 86979093 . G A 1216.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490;CNN_1D=-1.865;DP=109;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=-1.371;SOR=0.587 GT:AD:DP:GQ:PL 0/1:49,59:108:99:1224,0,1105 2 86997140 . T C 735.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;CNN_1D=0.982;DP=65;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-0.197;SOR=1.037 GT:AD:DP:GQ:PL 0/1:33,32:65:99:743,0,746 2 87017575 . C T 1322.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;CNN_1D=-3.448;DP=128;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-0.129;SOR=0.913 GT:AD:DP:GQ:PL 0/1:71,57:128:99:1330,0,1755 2 87017662 . G T 1372.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;CNN_1D=-5.777;DP=151;ExcessHet=3.0103;FS=5.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-1.250;SOR=1.013 GT:AD:DP:GQ:PL 0/1:89,62:151:99:1380,0,2165 2 87069431 . C T 2377.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=0.967;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=39.20;QD=29.35;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2391,243,0 2 87073852 . C T 1245.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;CNN_1D=-3.913;DP=120;ExcessHet=3.0103;FS=3.281;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-0.529;QD=10.38;ReadPosRankSum=-0.867;SOR=0.997 GT:AD:DP:GQ:PL 0/1:62,58:120:99:1253,0,1358 2 87088964 . A G 144.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;CNN_1D=-1.389;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-1.375;QD=5.16;ReadPosRankSum=-1.284;SOR=0.818 GT:AD:DP:GQ:PL 0/1:19,9:28:99:152,0,415 2 87211874 . T C 90.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;CNN_1D=-8.921;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=32.01;MQRankSum=-0.989;QD=7.55;ReadPosRankSum=0.935;SOR=0.693 GT:AD:DP:GQ:PL 0/1:6,6:12:98:98,0,138 2 87243501 . T C 176.93 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-1.971;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=27.00;QD=29.49;SOR=3.912 GT:AD:DP:GQ:PL 1/1:0,6:6:18:191,18,0 2 88083784 . G A 65.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;CNN_1D=-4.996;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=24.70;MQRankSum=0.143;QD=4.37;ReadPosRankSum=1.308;SOR=0.160 GT:AD:DP:GQ:PL 0/1:11,4:15:73:73,0,278 2 88083849 . T C 66.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;CNN_1D=-5.131;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=24.46;MQRankSum=1.149;QD=4.44;ReadPosRankSum=-1.377;SOR=0.160 GT:AD:DP:GQ:PL 0/1:11,4:15:74:74,0,272 2 88387557 . A C 1273.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;CNN_1D=-2.946;DP=125;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=1.121;SOR=0.556 GT:AD:DP:GQ:PL 0/1:63,60:123:99:1281,0,1492 2 88396120 . G A 1731.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;CNN_1D=-0.879;DP=108;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=1.019;SOR=0.986 GT:AD:DP:GQ:PL 0/1:62,46:108:99:1739,0,3141 2 88396123 . C G 1753.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;CNN_1D=-0.752;DP=110;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=1.252;SOR=0.996 GT:AD:DP:GQ:PL 0/1:64,46:110:99:1761,0,3138 2 88396174 . T C 1355.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;CNN_1D=-4.353;DP=143;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-0.778;SOR=0.606 GT:AD:DP:GQ:PL 0/1:79,64:143:99:1363,0,1929 2 88407959 . T C 1578.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;CNN_1D=-5.849;DP=176;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-1.272;SOR=0.810 GT:AD:DP:GQ:PL 0/1:101,75:176:99:1586,0,2192 2 88424066 . T C 2118.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;CNN_1D=-5.316;DP=186;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=1.700;SOR=0.607 GT:AD:DP:GQ:PL 0/1:90,96:186:99:2126,0,1984 2 88472791 . G A 3673.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.929;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.04;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3687,392,0 2 88751751 . A AG 809.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.239;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.17;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,22:22:66:823,66,0 2 88874891 . C A 3517.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.929;CNN_1D=1.338;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.91;ReadPosRankSum=-0.293;SOR=1.107 GT:AD:DP:GQ:PL 1/1:2,124:126:99:3531,329,0 2 88882942 . T A 1787.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.425;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.82;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1801,185,0 2 88895123 . T C 2771.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.561;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.57;SOR=1.099 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2785,291,0 2 88926729 . CCAG C 43.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;CNN_1D=-2.623;DP=28;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.707;SOR=1.061 GT:AD:DP:GQ:PL 0/1:25,3:28:51:51,0,1060 2 95542332 . C A 702.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;CNN_1D=-14.158;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-11.451;QD=5.24;ReadPosRankSum=-2.563;SOR=0.723 GT:AD:DP:GQ:PL 0/1:109,25:134:99:710,0,4511 2 95542340 . A G 1313.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;CNN_1D=-13.446;DP=140;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=56.52;MQRankSum=-11.669;QD=9.38;ReadPosRankSum=-2.960;SOR=0.805 GT:AD:DP:GQ:PL 0/1:109,31:140:99:1321,0,4758 2 95542346 . A G 2207.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;CNN_1D=-14.815;DP=165;ExcessHet=3.0103;FS=3.989;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-12.185;QD=13.38;ReadPosRankSum=-5.053;SOR=1.077 GT:AD:DP:GQ:PL 0/1:113,52:165:99:2215,0,4645 2 95542363 . C G 3674.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;CNN_1D=-15.981;DP=221;ExcessHet=3.0103;FS=3.045;MLEAC=1;MLEAF=0.500;MQ=55.22;MQRankSum=-13.449;QD=16.63;ReadPosRankSum=-4.430;SOR=0.919 GT:AD:DP:GQ:PL 0/1:127,94:221:99:3682,0,5167 2 95542376 . G T 4411.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.015;CNN_1D=-16.081;DP=249;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.500;MQ=54.65;MQRankSum=-14.224;QD=17.72;ReadPosRankSum=-2.533;SOR=0.859 GT:AD:DP:GQ:PL 0/1:134,115:249:99:4419,0,5354 2 95542377 . C T 4414.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;CNN_1D=-16.044;DP=248;ExcessHet=3.0103;FS=2.136;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-14.185;QD=17.80;ReadPosRankSum=-2.373;SOR=0.842 GT:AD:DP:GQ:PL 0/1:133,115:248:99:4422,0,5312 2 95542415 . C T 427.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;CNN_1D=-15.912;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.82;MQRankSum=-5.538;QD=1.58;ReadPosRankSum=0.666;SOR=0.668 GT:AD:DP:GQ:PL 0/1:219,51:270:99:435,0,7182 2 95542416 . A G 5524.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.689;CNN_1D=-16.087;DP=268;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=52.64;MQRankSum=-14.429;QD=20.61;ReadPosRankSum=0.666;SOR=0.607 GT:AD:DP:GQ:PL 0/1:126,142:268:99:5532,0,4822 2 95542419 . G A 5567.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.487;CNN_1D=-16.090;DP=267;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.500;MQ=52.65;MQRankSum=-14.412;QD=20.85;ReadPosRankSum=0.860;SOR=0.624 GT:AD:DP:GQ:PL 0/1:126,141:267:99:5575,0,4816 2 95542476 . C T 2238.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.876;CNN_1D=-15.780;DP=194;ExcessHet=3.0103;FS=1.780;MLEAC=1;MLEAF=0.500;MQ=52.80;MQRankSum=-13.063;QD=11.60;ReadPosRankSum=1.554;SOR=0.550 GT:AD:DP:GQ:PL 0/1:105,88:193:99:2246,0,2420 2 95542482 . C A 776.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;CNN_1D=-13.647;DP=188;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=52.66;MQRankSum=-5.458;QD=4.15;ReadPosRankSum=-0.549;SOR=0.562 GT:AD:DP:GQ:PL 0/1:157,30:187:99:784,0,6503 2 95542485 . A C 779.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;CNN_1D=-13.178;DP=186;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=52.66;MQRankSum=-5.491;QD=4.21;ReadPosRankSum=-0.967;SOR=0.538 GT:AD:DP:GQ:PL 0/1:155,30:185:99:787,0,6481 2 95816017 . T TA 343.67 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;CNN_1D=-3.025;DP=48;ExcessHet=3.0103;FS=4.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.894;SOR=0.180 GT:AD:DP:GQ:PL 0/1:12,25:37:80:351,0,80 2 95847040 . TGCG T 7100.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.954;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.14;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,160:160:99:7114,483,0 2 95944902 . A AC 554.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.853;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.63;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,16:16:48:568,48,0 2 95947085 . A G 2044.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.477;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.06;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2058,203,0 2 96265165 . C T 74.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;CNN_1D=-2.679;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=37.38;MQRankSum=-1.068;QD=10.66;ReadPosRankSum=2.189;SOR=0.495 GT:AD:DP:GQ:PL 0/1:4,3:7:82:82,0,129 2 96780716 . T G 6077.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.438;CNN_1D=-3.750;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.00;ReadPosRankSum=-1.206;SOR=0.231 GT:AD:DP:GQ:PL 1/1:1,216:217:99:6091,611,0 2 96780986 . C CTCCTCCTCT 8652.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.564;CNN_1D=-5.527;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.30;ReadPosRankSum=-0.075;SOR=0.240 GT:AD:DP:GQ:PL 1/1:1,199:200:99:8666,530,0 2 96795857 . T C 874.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;CNN_1D=0.740;DP=79;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-0.516;SOR=0.589 GT:AD:DP:GQ:PL 0/1:42,37:79:99:882,0,1046 2 96859034 . A G 1057.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.459;CNN_1D=-2.955;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=2.777;SOR=0.643 GT:AD:DP:GQ:PL 0/1:74,45:119:99:1065,0,1786 2 96861159 . C G 923.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;CNN_1D=-0.510;DP=81;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=1.343;SOR=0.586 GT:AD:DP:GQ:PL 0/1:42,39:81:99:931,0,926 2 96919642 . C T 2682.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.274;CNN_1D=-8.774;DP=228;ExcessHet=3.0103;FS=2.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=0.719;SOR=0.888 GT:AD:DP:GQ:PL 0/1:116,112:228:99:2690,0,2562 2 96943433 . G C 1315.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;CNN_1D=-2.925;DP=119;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.627;SOR=0.605 GT:AD:DP:GQ:PL 0/1:61,58:119:99:1323,0,1547 2 96952833 . A G 1270.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;CNN_1D=-3.140;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-0.697;SOR=0.736 GT:AD:DP:GQ:PL 0/1:71,56:127:99:1278,0,1745 2 96993757 . C T 1852.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;CNN_1D=-6.017;DP=174;ExcessHet=3.0103;FS=5.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-1.077;SOR=0.599 GT:AD:DP:GQ:PL 0/1:94,80:174:99:1860,0,2237 2 96993884 . A G 1912.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;CNN_1D=-2.816;DP=130;ExcessHet=3.0103;FS=5.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=-1.496;SOR=1.240 GT:AD:DP:GQ:PL 0/1:52,75:127:99:1920,0,1202 2 97020049 . T C 1389.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;CNN_1D=-1.601;DP=108;ExcessHet=3.0103;FS=6.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-0.199;SOR=1.153 GT:AD:DP:GQ:PL 0/1:45,63:108:99:1397,0,881 2 97030247 . T C 470.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;CNN_1D=1.012;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=1.955;SOR=0.744 GT:AD:DP:GQ:PL 0/1:32,22:54:99:478,0,783 2 97166204 . A G 696.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;CNN_1D=2.090;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-0.457;SOR=0.803 GT:AD:DP:GQ:PL 0/1:18,31:49:99:704,0,376 2 97559759 . G A 904.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;CNN_1D=0.077;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=0.482;SOR=0.754 GT:AD:DP:GQ:PL 0/1:42,38:80:99:912,0,1116 2 97613616 . T C 1098.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;CNN_1D=0.571;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.127;SOR=0.645 GT:AD:DP:GQ:PL 0/1:44,51:95:99:1106,0,934 2 97613647 . G GA 270.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;CNN_1D=-1.988;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.479;SOR=0.656 GT:AD:DP:GQ:PL 0/1:51,18:69:99:278,0,1200 2 97617140 . T C 1280.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;CNN_1D=-2.286;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-0.324;SOR=0.713 GT:AD:DP:GQ:PL 0/1:62,56:118:99:1288,0,1280 2 97617227 . A G 943.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;CNN_1D=-2.563;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.803;SOR=0.716 GT:AD:DP:GQ:PL 0/1:56,45:101:99:951,0,1289 2 97637905 . T C 1670.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;CNN_1D=-0.512;DP=118;ExcessHet=3.0103;FS=4.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=2.117;SOR=0.437 GT:AD:DP:GQ:PL 0/1:49,69:118:99:1678,0,1087 2 97638038 . A G 755.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;CNN_1D=0.465;DP=68;ExcessHet=3.0103;FS=8.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=0.834;SOR=1.496 GT:AD:DP:GQ:PL 0/1:38,30:68:99:763,0,946 2 97808394 . C G 72.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;CNN_1D=-5.101;DP=25;ExcessHet=3.0103;FS=4.559;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-4.546;QD=2.90;ReadPosRankSum=1.432;SOR=1.149 GT:AD:DP:GQ:PL 0/1:19,6:25:80:80,0,490 2 97827839 . G A 89.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;CNN_1D=-1.854;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.23;MQRankSum=-0.746;QD=3.45;ReadPosRankSum=2.059;SOR=0.871 GT:AD:DP:GQ:PL 0/1:19,7:26:97:97,0,391 2 97830012 . C T 326.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;CNN_1D=-7.228;DP=48;ExcessHet=3.0103;FS=3.264;MLEAC=1;MLEAF=0.500;MQ=36.51;MQRankSum=-3.328;QD=6.80;ReadPosRankSum=-0.698;SOR=1.284 GT:AD:DP:GQ:PL 0/1:38,10:48:99:334,0,2027 2 97830016 . G T 379.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;CNN_1D=-7.093;DP=48;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.500;MQ=36.08;MQRankSum=-3.393;QD=7.91;ReadPosRankSum=-1.080;SOR=1.329 GT:AD:DP:GQ:PL 0/1:37,11:48:99:387,0,1988 2 97830018 . A C 110.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;CNN_1D=-8.159;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=35.53;MQRankSum=-2.852;QD=2.26;ReadPosRankSum=-1.218;SOR=0.941 GT:AD:DP:GQ:PL 0/1:41,8:49:99:118,0,2316 2 97830053 . A G 262.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;CNN_1D=-6.947;DP=60;ExcessHet=3.0103;FS=2.487;MLEAC=1;MLEAF=0.500;MQ=43.19;MQRankSum=-4.968;QD=4.38;ReadPosRankSum=-0.033;SOR=0.375 GT:AD:DP:GQ:PL 0/1:43,17:60:99:270,0,1227 2 97830179 . G A 36.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.834;CNN_1D=-10.374;DP=84;ExcessHet=3.0103;FS=3.261;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-7.512;QD=0.44;ReadPosRankSum=-0.948;SOR=1.525 GT:AD:DP:GQ:PL 0/1:75,9:84:44:44,0,1925 2 97830192 . T C 86.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.491;CNN_1D=-10.408;DP=77;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-8.034;QD=1.12;ReadPosRankSum=-2.471;SOR=0.976 GT:AD:DP:GQ:PL 0/1:67,10:77:94:94,0,1722 2 97833342 . G A 1096.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;CNN_1D=-8.470;DP=142;ExcessHet=3.0103;FS=6.474;MLEAC=1;MLEAF=0.500;MQ=44.85;MQRankSum=-1.715;QD=7.72;ReadPosRankSum=-4.118;SOR=0.623 GT:AD:DP:GQ:PL 0/1:88,54:142:99:1104,0,2105 2 97833466 . C T 1341.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;CNN_1D=-15.039;DP=170;ExcessHet=3.0103;FS=47.434;MLEAC=1;MLEAF=0.500;MQ=41.99;MQRankSum=-6.596;QD=7.89;ReadPosRankSum=-1.008;SOR=2.661 GT:AD:DP:GQ:PL 0/1:111,59:170:99:1349,0,2850 2 97849219 . T C 696.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;CNN_1D=2.275;DP=44;ExcessHet=3.0103;FS=4.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.83;ReadPosRankSum=0.879;SOR=1.609 GT:AD:DP:GQ:PL 0/1:16,28:44:99:704,0,332 2 97851069 . A G 178.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;CNN_1D=-1.656;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.27;MQRankSum=1.598;QD=5.25;ReadPosRankSum=-3.089;SOR=0.986 GT:AD:DP:GQ:PL 0/1:26,8:34:99:186,0,739 2 97851073 . GC G 73.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;CNN_1D=-4.804;DP=33;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.500;MQ=50.37;MQRankSum=-3.236;QD=2.23;ReadPosRankSum=-0.193;SOR=0.204 GT:AD:DP:GQ:PL 0/1:29,4:33:81:81,0,1705 2 97851077 . C G 73.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;CNN_1D=-4.524;DP=33;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.500;MQ=50.37;MQRankSum=-3.236;QD=2.23;ReadPosRankSum=0.028;SOR=0.204 GT:AD:DP:GQ:PL 0/1:29,4:33:81:81,0,1705 2 97851078 . A AG 73.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;CNN_1D=-5.276;DP=33;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.500;MQ=50.37;MQRankSum=-3.236;QD=2.23;ReadPosRankSum=0.166;SOR=0.204 GT:AD:DP:GQ:PL 0/1:29,4:33:81:81,0,1705 2 97851082 . GTAAT G 49.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;CNN_1D=-5.978;DP=38;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=49.94;MQRankSum=-3.316;QD=1.31;ReadPosRankSum=0.580;SOR=0.277 GT:AD:DP:GQ:PL 0/1:34,4:38:57:57,0,1969 2 97860487 . T C 535.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;CNN_1D=-2.599;DP=85;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=0.420;QD=6.30;ReadPosRankSum=0.010;SOR=1.218 GT:AD:DP:GQ:PL 0/1:60,25:85:99:543,0,1512 2 97864333 . C A 1271.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;CNN_1D=-0.429;DP=65;ExcessHet=3.0103;FS=3.438;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-3.513;QD=19.87;ReadPosRankSum=1.324;SOR=0.905 GT:AD:DP:GQ:PL 0/1:31,33:64:99:1279,0,1622 2 97864334 . C T 1271.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;CNN_1D=0.711;DP=66;ExcessHet=3.0103;FS=4.883;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-3.211;QD=19.56;ReadPosRankSum=1.483;SOR=0.876 GT:AD:DP:GQ:PL 0/1:32,33:65:99:1279,0,1622 2 97864374 . G T 653.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.837;CNN_1D=-4.302;DP=66;ExcessHet=3.0103;FS=8.949;MLEAC=1;MLEAF=0.500;MQ=52.00;MQRankSum=-3.043;QD=9.90;ReadPosRankSum=0.190;SOR=1.665 GT:AD:DP:GQ:PL 0/1:40,26:66:99:661,0,933 2 97877292 . C A 334.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;CNN_1D=2.796;DP=24;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=0.261;SOR=0.307 GT:AD:DP:GQ:PL 0/1:11,13:24:99:342,0,301 2 97877399 . T C 757.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;CNN_1D=2.573;DP=49;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=-0.042;SOR=0.892 GT:AD:DP:GQ:PL 0/1:18,31:49:99:765,0,398 2 97877440 . T C 420.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;CNN_1D=0.388;DP=69;ExcessHet=3.0103;FS=2.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=0.744;SOR=0.437 GT:AD:DP:GQ:PL 0/1:45,24:69:99:428,0,1091 2 97877478 . G A 202.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;CNN_1D=-1.461;DP=59;ExcessHet=3.0103;FS=4.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.769;SOR=1.478 GT:AD:DP:GQ:PL 0/1:46,13:59:99:210,0,1103 2 97883087 . A G 246.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.536;CNN_1D=-6.066;DP=74;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=47.59;MQRankSum=-3.003;QD=3.33;ReadPosRankSum=0.661;SOR=0.383 GT:AD:DP:GQ:PL 0/1:63,11:74:99:254,0,3215 2 97883094 . T G 218.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.336;CNN_1D=-5.277;DP=69;ExcessHet=3.0103;FS=3.138;MLEAC=1;MLEAF=0.500;MQ=48.25;MQRankSum=-3.151;QD=3.17;ReadPosRankSum=1.688;SOR=0.276 GT:AD:DP:GQ:PL 0/1:59,10:69:99:226,0,3174 2 98127653 . T G 52.28 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-1.488;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=27.00;QD=26.14;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:6:64,6,0 2 98127859 . T C 46.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;CNN_1D=-4.922;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=26.22;MQRankSum=-1.645;QD=9.32;ReadPosRankSum=0.000;SOR=0.446 GT:AD:DP:GQ:PL 0/1:3,2:5:54:54,0,80 2 98127884 . T C 43.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;CNN_1D=-6.287;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=26.35;MQRankSum=-1.834;QD=7.27;ReadPosRankSum=-0.431;SOR=0.307 GT:AD:DP:GQ:PL 0/1:4,2:6:51:51,0,109 2 98127911 . A G 85.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;CNN_1D=-5.413;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=26.27;MQRankSum=-2.369;QD=10.70;ReadPosRankSum=-0.414;SOR=0.368 GT:AD:DP:GQ:PL 0/1:5,3:8:93:93,0,285 2 98127923 . T C 153.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;CNN_1D=-5.287;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=26.11;MQRankSum=-3.067;QD=13.96;ReadPosRankSum=-1.063;SOR=0.551 GT:AD:DP:GQ:PL 0/1:6,5:11:99:161,0,157 2 98128093 . G A 317.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;CNN_1D=-8.391;DP=35;ExcessHet=3.0103;FS=11.344;MLEAC=1;MLEAF=0.500;MQ=33.57;MQRankSum=-1.575;QD=9.07;ReadPosRankSum=-3.399;SOR=3.442 GT:AD:DP:GQ:PL 0/1:27,8:35:99:325,0,1104 2 98128098 . G A 526.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.027;CNN_1D=-9.161;DP=47;ExcessHet=3.0103;FS=24.249;MLEAC=1;MLEAF=0.500;MQ=34.91;MQRankSum=-0.746;QD=11.20;ReadPosRankSum=-3.708;SOR=4.813 GT:AD:DP:GQ:PL 0/1:31,16:47:99:534,0,1296 2 98128099 . A C 526.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;CNN_1D=-8.877;DP=48;ExcessHet=3.0103;FS=24.249;MLEAC=1;MLEAF=0.500;MQ=34.77;MQRankSum=-0.746;QD=11.20;ReadPosRankSum=-3.674;SOR=4.813 GT:AD:DP:GQ:PL 0/1:31,16:47:99:534,0,1296 2 98128128 . G A 403.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;CNN_1D=-9.344;DP=105;ExcessHet=3.0103;FS=4.914;MLEAC=1;MLEAF=0.500;MQ=36.43;MQRankSum=-0.767;QD=3.84;ReadPosRankSum=-2.111;SOR=1.276 GT:AD:DP:GQ:PL 0/1:81,24:105:99:411,0,3021 2 98128135 . G A 3564.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.710;CNN_1D=-5.380;DP=125;ExcessHet=3.0103;FS=22.617;MLEAC=1;MLEAF=0.500;MQ=37.31;MQRankSum=-2.442;QD=28.52;ReadPosRankSum=-4.500;SOR=2.285 GT:AD:DP:GQ:PL 0/1:45,80:125:99:3572,0,1601 2 98128143 . T C 4317.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.158;CNN_1D=-7.189;DP=145;ExcessHet=3.0103;FS=20.900;MLEAC=1;MLEAF=0.500;MQ=37.57;MQRankSum=-2.734;QD=29.78;ReadPosRankSum=-4.874;SOR=2.090 GT:AD:DP:GQ:PL 0/1:45,100:145:99:4325,0,1547 2 98128150 . G A 3485.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;CNN_1D=-10.412;DP=178;ExcessHet=3.0103;FS=18.648;MLEAC=1;MLEAF=0.500;MQ=37.77;MQRankSum=-3.623;QD=19.80;ReadPosRankSum=-2.345;SOR=1.828 GT:AD:DP:GQ:PL 0/1:70,106:176:99:3493,0,2435 2 98128172 . C A 6360.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.002;CNN_1D=-14.744;DP=262;ExcessHet=3.0103;FS=33.317;MLEAC=1;MLEAF=0.500;MQ=38.74;MQRankSum=-5.613;QD=24.28;ReadPosRankSum=-1.645;SOR=1.876 GT:AD:DP:GQ:PL 0/1:63,199:262:99:6368,0,1858 2 98128183 . C G 417.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;CNN_1D=-16.110;DP=295;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=38.81;MQRankSum=-4.034;QD=1.46;ReadPosRankSum=-0.150;SOR=0.913 GT:AD:DP:GQ:PL 0/1:238,49:287:99:425,0,7874 2 98128194 . G C 9821.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;CNN_1D=-14.509;DP=306;ExcessHet=3.0103;FS=21.244;MLEAC=1;MLEAF=0.500;MQ=38.51;MQRankSum=-5.960;QD=32.10;ReadPosRankSum=1.703;SOR=1.425 GT:AD:DP:GQ:PL 0/1:69,237:306:99:9829,0,2543 2 98128195 . G A 9821.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;CNN_1D=-15.169;DP=306;ExcessHet=3.0103;FS=22.951;MLEAC=1;MLEAF=0.500;MQ=38.48;MQRankSum=-6.045;QD=32.10;ReadPosRankSum=1.626;SOR=1.395 GT:AD:DP:GQ:PL 0/1:68,238:306:99:9829,0,2543 2 98128196 . T C 9821.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;CNN_1D=-14.912;DP=308;ExcessHet=3.0103;FS=21.236;MLEAC=1;MLEAF=0.500;MQ=38.41;MQRankSum=-6.077;QD=31.89;ReadPosRankSum=1.698;SOR=1.357 GT:AD:DP:GQ:PL 0/1:68,240:308:99:9829,0,2543 2 98128256 . C T 10901.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;CNN_1D=-14.316;DP=314;ExcessHet=3.0103;FS=7.472;MLEAC=1;MLEAF=0.500;MQ=37.05;MQRankSum=-5.317;QD=34.72;ReadPosRankSum=1.002;SOR=0.660 GT:AD:DP:GQ:PL 0/1:53,261:314:99:10909,0,1530 2 98128258 . G C 10831.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;CNN_1D=-14.918;DP=308;ExcessHet=3.0103;FS=5.344;MLEAC=1;MLEAF=0.500;MQ=36.99;MQRankSum=-5.512;QD=28.75;ReadPosRankSum=1.025;SOR=0.612 GT:AD:DP:GQ:PL 0/1:52,256:308:99:10839,0,1536 2 98128300 . A G 1193.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;CNN_1D=-14.663;DP=199;ExcessHet=3.0103;FS=2.676;MLEAC=1;MLEAF=0.500;MQ=32.54;MQRankSum=-3.603;QD=6.15;ReadPosRankSum=0.100;SOR=0.921 GT:AD:DP:GQ:PL 0/1:127,67:194:99:1201,0,2890 2 98128313 . G A 2849.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;CNN_1D=-8.488;DP=166;ExcessHet=3.0103;FS=4.605;MLEAC=1;MLEAF=0.500;MQ=31.76;MQRankSum=-1.210;QD=17.92;ReadPosRankSum=0.299;SOR=1.141 GT:AD:DP:GQ:PL 0/1:43,116:159:99:2857,0,665 2 98128364 . T C 2037.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.002;CNN_1D=-7.770;DP=88;ExcessHet=3.0103;FS=36.605;MLEAC=1;MLEAF=0.500;MQ=26.64;MQRankSum=-1.235;QD=23.15;ReadPosRankSum=-0.041;SOR=4.468 GT:AD:DP:GQ:PL 0/1:18,70:88:99:2045,0,305 2 98128402 . C A 1571.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.688;CNN_1D=-5.073;DP=73;ExcessHet=3.0103;FS=60.134;MLEAC=1;MLEAF=0.500;MQ=26.31;MQRankSum=1.280;QD=21.53;ReadPosRankSum=-1.454;SOR=3.012 GT:AD:DP:GQ:PL 0/1:20,53:73:99:1579,0,545 2 98128421 . T C 1351.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.933;CNN_1D=-3.442;DP=65;ExcessHet=3.0103;FS=47.236;MLEAC=1;MLEAF=0.500;MQ=26.13;MQRankSum=0.836;QD=20.79;ReadPosRankSum=-2.296;SOR=2.379 GT:AD:DP:GQ:PL 0/1:20,45:65:99:1359,0,567 2 98128449 . T A 833.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;CNN_1D=-4.071;DP=60;ExcessHet=3.0103;FS=17.140;MLEAC=1;MLEAF=0.500;MQ=28.26;MQRankSum=-1.123;QD=13.89;ReadPosRankSum=0.518;SOR=0.445 GT:AD:DP:GQ:PL 0/1:29,31:60:99:841,0,708 2 98128515 . C T 1365.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;CNN_1D=-3.983;DP=76;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=31.10;MQRankSum=-1.399;QD=17.97;ReadPosRankSum=0.109;SOR=0.966 GT:AD:DP:GQ:PL 0/1:41,35:76:99:1373,0,1592 2 98128520 . G A 1365.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;CNN_1D=-4.724;DP=77;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=31.03;MQRankSum=-1.481;QD=17.74;ReadPosRankSum=-0.311;SOR=1.022 GT:AD:DP:GQ:PL 0/1:41,36:77:99:1373,0,1592 2 98129670 . C T 170.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;CNN_1D=-7.901;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=34.66;MQRankSum=-2.537;QD=3.79;ReadPosRankSum=0.396;SOR=0.818 GT:AD:DP:GQ:PL 0/1:34,11:45:99:178,0,837 2 98129682 . T C 1119.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.251;CNN_1D=-3.599;DP=57;ExcessHet=3.0103;FS=5.616;MLEAC=1;MLEAF=0.500;MQ=36.29;MQRankSum=-2.820;QD=19.64;ReadPosRankSum=0.256;SOR=1.546 GT:AD:DP:GQ:PL 0/1:29,28:57:99:1127,0,1241 2 98129683 . G A 1119.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.032;CNN_1D=-4.068;DP=58;ExcessHet=3.0103;FS=5.616;MLEAC=1;MLEAF=0.500;MQ=36.43;MQRankSum=-2.765;QD=19.30;ReadPosRankSum=0.086;SOR=1.620 GT:AD:DP:GQ:PL 0/1:29,29:58:99:1127,0,1241 2 98129690 . T C 1400.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.155;CNN_1D=-4.000;DP=67;ExcessHet=3.0103;FS=6.956;MLEAC=1;MLEAF=0.500;MQ=36.80;MQRankSum=-3.066;QD=20.90;ReadPosRankSum=-0.535;SOR=1.646 GT:AD:DP:GQ:PL 0/1:31,36:67:99:1408,0,1271 2 98129691 . G A 1400.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;CNN_1D=-4.486;DP=67;ExcessHet=3.0103;FS=6.956;MLEAC=1;MLEAF=0.500;MQ=36.80;MQRankSum=-3.066;QD=20.90;ReadPosRankSum=-0.535;SOR=1.646 GT:AD:DP:GQ:PL 0/1:31,36:67:99:1408,0,1271 2 98129707 . G T 2178.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;CNN_1D=-5.064;DP=93;ExcessHet=3.0103;FS=5.512;MLEAC=1;MLEAF=0.500;MQ=38.72;MQRankSum=-3.943;QD=23.43;ReadPosRankSum=-1.238;SOR=1.342 GT:AD:DP:GQ:PL 0/1:39,54:93:99:2186,0,1653 2 98129716 . A G 2698.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;CNN_1D=-5.085;DP=106;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=39.44;MQRankSum=-4.013;QD=25.46;ReadPosRankSum=-2.896;SOR=0.984 GT:AD:DP:GQ:PL 0/1:39,67:106:99:2706,0,1613 2 98129717 . C T 2701.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;CNN_1D=-5.447;DP=107;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.500;MQ=39.33;MQRankSum=-4.063;QD=25.25;ReadPosRankSum=-2.988;SOR=1.013 GT:AD:DP:GQ:PL 0/1:39,68:107:99:2709,0,1592 2 98129731 . C T 3147.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;CNN_1D=-5.738;DP=120;ExcessHet=3.0103;FS=5.941;MLEAC=1;MLEAF=0.500;MQ=39.89;MQRankSum=-4.386;QD=26.23;ReadPosRankSum=-2.138;SOR=1.223 GT:AD:DP:GQ:PL 0/1:44,76:120:99:3155,0,1864 2 98129733 . A C 3233.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;CNN_1D=-6.222;DP=125;ExcessHet=3.0103;FS=5.719;MLEAC=1;MLEAF=0.500;MQ=40.34;MQRankSum=-4.248;QD=25.87;ReadPosRankSum=-1.601;SOR=1.195 GT:AD:DP:GQ:PL 0/1:47,78:125:99:3241,0,1855 2 98129734 . T C 3276.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;CNN_1D=-6.346;DP=126;ExcessHet=3.0103;FS=4.526;MLEAC=1;MLEAF=0.500;MQ=40.24;MQRankSum=-4.302;QD=26.00;ReadPosRankSum=-1.690;SOR=1.151 GT:AD:DP:GQ:PL 0/1:47,79:126:99:3284,0,1849 2 98129744 . C T 3255.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;CNN_1D=-5.923;DP=130;ExcessHet=3.0103;FS=3.366;MLEAC=1;MLEAF=0.500;MQ=40.78;MQRankSum=-3.610;QD=25.04;ReadPosRankSum=-1.490;SOR=1.075 GT:AD:DP:GQ:PL 0/1:46,84:130:99:3263,0,1850 2 98129817 . T C 1521.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;CNN_1D=-8.576;DP=101;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=40.95;MQRankSum=-3.799;QD=15.07;ReadPosRankSum=-0.416;SOR=0.564 GT:AD:DP:GQ:PL 0/1:31,70:101:99:1529,0,522 2 98164020 . C T 773.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;CNN_1D=-7.203;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.64;MQRankSum=-7.601;QD=12.09;ReadPosRankSum=-2.121;SOR=0.693 GT:AD:DP:GQ:PL 0/1:42,22:64:99:781,0,2123 2 98164021 . T C 773.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;CNN_1D=-7.339;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-7.533;QD=12.28;ReadPosRankSum=-2.228;SOR=0.648 GT:AD:DP:GQ:PL 0/1:41,22:63:99:781,0,2123 2 98164184 . C G 260.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;CNN_1D=0.953;DP=42;ExcessHet=3.0103;FS=5.030;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=1.019;QD=6.20;ReadPosRankSum=-0.245;SOR=0.475 GT:AD:DP:GQ:PL 0/1:29,13:42:99:268,0,794 2 98177124 . T G 371.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;CNN_1D=-1.115;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-1.937;QD=9.53;ReadPosRankSum=-0.789;SOR=0.846 GT:AD:DP:GQ:PL 0/1:21,18:39:99:379,0,537 2 98177305 . C G 89.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.876;CNN_1D=-8.228;DP=40;ExcessHet=3.0103;FS=11.289;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=-4.745;QD=2.24;ReadPosRankSum=-0.171;SOR=3.258 GT:AD:DP:GQ:PL 0/1:34,6:40:97:97,0,815 2 98273661 . A G 862.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;CNN_1D=0.675;DP=75;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=0.138;SOR=0.478 GT:AD:DP:GQ:PL 0/1:39,36:75:99:870,0,905 2 98274527 . G C 1566.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.536;CNN_1D=-4.649;DP=155;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.352;SOR=0.643 GT:AD:DP:GQ:PL 0/1:90,65:155:99:1574,0,2028 2 98392302 . G A 1355.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;CNN_1D=-3.000;DP=119;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-1.098;SOR=0.793 GT:AD:DP:GQ:PL 0/1:59,60:119:99:1363,0,1200 2 98611994 . G T 612.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;CNN_1D=2.015;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=-1.969;SOR=0.610 GT:AD:DP:GQ:PL 0/1:21,24:45:99:620,0,417 2 98736225 . C T 665.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;CNN_1D=0.872;DP=63;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=0.901;SOR=0.534 GT:AD:DP:GQ:PL 0/1:32,31:63:99:673,0,688 2 98844674 . C G 2143.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.413;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.36;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2157,219,0 2 98853173 . G A 2303.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.734;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.75;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2317,249,0 2 98928494 . G A 4021.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.404;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.72;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4035,418,0 2 99149946 . G A 1494.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;CNN_1D=-3.632;DP=146;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=1.100;SOR=0.801 GT:AD:DP:GQ:PL 0/1:77,68:145:99:1502,0,1672 2 99172244 . A G 2654.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;CNN_1D=-11.586;DP=282;ExcessHet=3.0103;FS=3.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.007;SOR=0.899 GT:AD:DP:GQ:PL 0/1:160,121:281:99:2662,0,3486 2 99193496 . C T 2143.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;CNN_1D=-6.223;DP=189;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-0.365;SOR=0.964 GT:AD:DP:GQ:PL 0/1:92,96:188:99:2151,0,2050 2 99685347 . A C 285.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;CNN_1D=-0.846;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.948;SOR=0.861 GT:AD:DP:GQ:PL 0/1:19,14:33:99:293,0,384 2 99778735 . A G 1152.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;CNN_1D=-1.437;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=0.262;SOR=0.710 GT:AD:DP:GQ:PL 0/1:58,46:104:99:1160,0,1505 2 99778985 . T C 4680.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.816;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.19;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4694,498,0 2 99779131 . T C 1339.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;CNN_1D=-0.915;DP=105;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=1.033;SOR=0.774 GT:AD:DP:GQ:PL 0/1:48,57:105:99:1347,0,1037 2 99804642 . T C 1559.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.214;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.84;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1573,168,0 2 99812070 . G A 2761.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.897;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.40;QD=27.89;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2775,296,0 2 99936265 . TA T 116.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;CNN_1D=-0.604;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.303;SOR=0.716 GT:AD:DP:GQ:PL 0/1:18,9:27:99:124,0,357 2 99978048 . G A 855.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;CNN_1D=-3.172;DP=120;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-0.829;SOR=0.814 GT:AD:DP:GQ:PL 0/1:77,43:120:99:863,0,1857 2 99992822 . A C 727.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;CNN_1D=1.251;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=1.818;SOR=0.706 GT:AD:DP:GQ:PL 0/1:25,32:57:99:735,0,506 2 99995804 . T C 476.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;CNN_1D=1.346;DP=50;ExcessHet=3.0103;FS=5.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=1.495;SOR=1.079 GT:AD:DP:GQ:PL 0/1:29,21:50:99:484,0,728 2 100019496 . A G 1116.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;CNN_1D=-1.489;DP=96;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=0.224;SOR=0.731 GT:AD:DP:GQ:PL 0/1:46,50:96:99:1124,0,1045 2 100055506 . A G 1270.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;CNN_1D=-0.423;DP=97;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=0.279;SOR=0.851 GT:AD:DP:GQ:PL 0/1:45,51:96:99:1278,0,1203 2 100343557 . C T 1730.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.250;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.36;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1744,183,0 2 100915772 . A G 2445.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.089;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.43;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2459,258,0 2 100916306 . A G 3585.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.193;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.14;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3599,314,0 2 100916315 . A G 906.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;CNN_1D=-1.125;DP=101;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.673;SOR=0.617 GT:AD:DP:GQ:PL 0/1:56,45:101:99:914,0,1238 2 100917109 . C T 551.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;CNN_1D=-2.267;DP=79;ExcessHet=3.0103;FS=4.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.133;SOR=1.326 GT:AD:DP:GQ:PL 0/1:51,28:79:99:559,0,1151 2 100938205 . G A 368.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;CNN_1D=2.163;DP=29;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-0.415;SOR=0.232 GT:AD:DP:GQ:PL 0/1:14,15:29:99:376,0,392 2 100938226 . G C 300.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;CNN_1D=2.582;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=0.092;SOR=0.892 GT:AD:DP:GQ:PL 0/1:12,11:23:99:308,0,297 2 100938328 . T C 488.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;CNN_1D=2.326;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=0.474;SOR=0.709 GT:AD:DP:GQ:PL 0/1:11,19:30:99:496,0,245 2 100938481 . C G 687.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;CNN_1D=2.964;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=1.603;SOR=0.758 GT:AD:DP:GQ:PL 0/1:21,29:50:99:695,0,393 2 101010082 . G C 2148.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;CNN_1D=-3.898;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.619;SOR=0.720 GT:AD:DP:GQ:PL 0/1:69,90:159:99:2156,0,1655 2 101014363 . C T 955.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;CNN_1D=-0.549;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-1.862;SOR=0.693 GT:AD:DP:GQ:PL 0/1:43,43:86:99:963,0,1002 2 101096960 . C T 1000.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;CNN_1D=-1.021;DP=97;ExcessHet=3.0103;FS=1.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-0.426;SOR=0.520 GT:AD:DP:GQ:PL 0/1:50,47:97:99:1008,0,1180 2 101587455 . C T 1188.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;CNN_1D=-2.990;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.136;SOR=0.705 GT:AD:DP:GQ:PL 0/1:65,57:122:99:1196,0,1414 2 101591304 . A G 1312.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;CNN_1D=-2.455;DP=120;ExcessHet=3.0103;FS=6.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=0.885;SOR=1.086 GT:AD:DP:GQ:PL 0/1:60,60:120:99:1320,0,1353 2 101609827 . C T 1654.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;CNN_1D=-2.825;DP=133;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=0.357;SOR=0.581 GT:AD:DP:GQ:PL 0/1:57,76:133:99:1662,0,1194 2 101624471 . T C 1904.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;CNN_1D=-4.399;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=0.698;SOR=0.691 GT:AD:DP:GQ:PL 0/1:78,82:160:99:1912,0,1780 2 101638888 . A G 1244.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;CNN_1D=-1.496;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-0.234;SOR=0.691 GT:AD:DP:GQ:PL 0/1:51,59:110:99:1252,0,1132 2 101644855 . G A 1661.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;CNN_1D=-2.618;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=0.582;SOR=0.693 GT:AD:DP:GQ:PL 0/1:70,70:140:99:1669,0,1542 2 101656726 . T C 1187.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;CNN_1D=-1.923;DP=112;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.108;SOR=0.778 GT:AD:DP:GQ:PL 0/1:58,54:112:99:1195,0,1329 2 101869588 . G T 1616.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;CNN_1D=-1.436;DP=113;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=-1.270;SOR=0.857 GT:AD:DP:GQ:PL 0/1:47,66:113:99:1624,0,1000 2 101898412 . G C 4174.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.047;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.83;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4188,450,0 2 101911385 . A G 1022.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.978;CNN_1D=1.719;DP=67;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.26;ReadPosRankSum=-0.595;SOR=0.493 GT:AD:DP:GQ:PL 0/1:22,45:67:99:1030,0,503 2 102038849 . T A 3342.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.838;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.32;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3356,354,0 2 102984279 . T C 987.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.020;CNN_1D=0.234;DP=74;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=1.342;SOR=0.516 GT:AD:DP:GQ:PL 0/1:38,36:74:99:995,0,1022 2 103001402 . C T 635.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;CNN_1D=0.300;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-0.537;SOR=0.623 GT:AD:DP:GQ:PL 0/1:43,31:74:99:643,0,900 2 103095404 . G A 1368.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;CNN_1D=-0.288;DP=107;ExcessHet=3.0103;FS=1.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=1.508;SOR=0.506 GT:AD:DP:GQ:PL 0/1:50,57:107:99:1376,0,1184 2 103136309 . T C 953.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;CNN_1D=1.026;DP=73;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=0.295;SOR=1.179 GT:AD:DP:GQ:PL 0/1:32,41:73:99:961,0,651 2 103149100 . G A 848.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;CNN_1D=0.600;DP=75;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=0.393;SOR=1.049 GT:AD:DP:GQ:PL 0/1:39,36:75:99:856,0,919 2 103324575 . T C 740.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;CNN_1D=-1.204;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.836;SOR=0.732 GT:AD:DP:GQ:PL 0/1:51,36:87:99:748,0,1203 2 103334969 . G A 1141.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;CNN_1D=-0.965;DP=92;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=-0.438;SOR=0.951 GT:AD:DP:GQ:PL 0/1:44,48:92:99:1149,0,980 2 103431404 . T C 949.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.212;CNN_1D=0.811;DP=85;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=1.946;SOR=0.468 GT:AD:DP:GQ:PL 0/1:40,45:85:99:957,0,999 2 105472055 . T C 1112.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.835;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=24.71;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1126,132,0 2 105665808 . C T 841.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;CNN_1D=-0.170;DP=82;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.307;SOR=0.595 GT:AD:DP:GQ:PL 0/1:44,38:82:99:849,0,967 2 105705507 . C T 795.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;CNN_1D=2.762;DP=61;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=2.127;SOR=0.467 GT:AD:DP:GQ:PL 0/1:24,37:61:99:803,0,472 2 105709023 . T C 2124.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.200;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.89;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2138,236,0 2 105713697 . A G 1745.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;CNN_1D=-1.745;DP=125;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=1.113;SOR=0.516 GT:AD:DP:GQ:PL 0/1:49,76:125:99:1753,0,1059 2 105859249 . C T 2288.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;CNN_1D=-4.146;DP=160;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=-1.760;SOR=0.780 GT:AD:DP:GQ:PL 0/1:66,94:160:99:2296,0,1485 2 105885961 . T C 2839.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.010;CNN_1D=1.891;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.56;ReadPosRankSum=-2.403;SOR=0.930 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2853,259,0 2 105889349 . G A 674.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.831;CNN_1D=1.341;DP=53;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=-2.682;SOR=0.906 GT:AD:DP:GQ:PL 0/1:24,29:53:99:682,0,465 2 105897003 . G A 2138.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;CNN_1D=-6.237;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-1.305;SOR=0.654 GT:AD:DP:GQ:PL 0/1:98,94:192:99:2146,0,2225 2 105924510 . A G 1383.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.697;CNN_1D=-2.684;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-1.336;SOR=0.709 GT:AD:DP:GQ:PL 0/1:70,57:127:99:1391,0,1671 2 106682226 . T C 541.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;CNN_1D=1.187;DP=42;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=-0.592;SOR=1.022 GT:AD:DP:GQ:PL 0/1:27,15:42:99:549,0,1346 2 106682235 . C G 565.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;CNN_1D=1.306;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=-1.115;SOR=0.776 GT:AD:DP:GQ:PL 0/1:26,16:42:99:573,0,1310 2 106742139 . C T 2003.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.266;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.07;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2017,221,0 2 107032417 . A G 1254.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;CNN_1D=-6.959;DP=105;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=55.42;MQRankSum=-6.416;QD=11.95;ReadPosRankSum=0.677;SOR=0.804 GT:AD:DP:GQ:PL 0/1:50,55:105:99:1262,0,1084 2 107032455 . G A 787.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;CNN_1D=3.356;DP=72;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=3.394;QD=10.94;ReadPosRankSum=1.849;SOR=0.938 GT:AD:DP:GQ:PL 0/1:37,35:72:99:795,0,876 2 107039737 . G A 672.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.414;CNN_1D=-9.230;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=33.15;MQRankSum=1.878;QD=3.80;ReadPosRankSum=1.427;SOR=0.678 GT:AD:DP:GQ:PL 0/1:131,46:177:99:680,0,3032 2 107039817 . G A 618.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;CNN_1D=-9.663;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=32.17;MQRankSum=-2.016;QD=4.91;ReadPosRankSum=0.670;SOR=0.588 GT:AD:DP:GQ:PL 0/1:90,36:126:99:626,0,2190 2 107039924 . G A 47.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;CNN_1D=-7.336;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=30.87;MQRankSum=-1.225;QD=1.70;ReadPosRankSum=-0.120;SOR=1.179 GT:AD:DP:GQ:PL 0/1:23,5:28:55:55,0,659 2 107040572 . T C 590.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.124;CNN_1D=-13.489;DP=131;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=48.09;MQRankSum=-8.318;QD=4.51;ReadPosRankSum=-2.197;SOR=0.815 GT:AD:DP:GQ:PL 0/1:101,30:131:99:598,0,2701 2 107040985 . T C 421.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.216;CNN_1D=-14.052;DP=140;ExcessHet=3.0103;FS=17.624;MLEAC=1;MLEAF=0.500;MQ=43.53;MQRankSum=-5.879;QD=3.01;ReadPosRankSum=-1.392;SOR=2.038 GT:AD:DP:GQ:PL 0/1:113,27:140:99:429,0,2803 2 107049604 . T C 979.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;CNN_1D=-9.374;DP=151;ExcessHet=3.0103;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=44.55;MQRankSum=-2.195;QD=6.49;ReadPosRankSum=-1.951;SOR=0.683 GT:AD:DP:GQ:PL 0/1:99,52:151:99:987,0,2098 2 107049714 . C G 491.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;CNN_1D=-7.812;DP=110;ExcessHet=3.0103;FS=4.382;MLEAC=1;MLEAF=0.500;MQ=44.29;MQRankSum=-1.349;QD=4.47;ReadPosRankSum=-0.532;SOR=1.230 GT:AD:DP:GQ:PL 0/1:83,27:110:99:499,0,1987 2 107423395 . T G 642.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;CNN_1D=-0.152;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-0.356;SOR=0.605 GT:AD:DP:GQ:PL 0/1:50,29:79:99:650,0,1153 2 107450589 . C T 765.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;CNN_1D=0.088;DP=76;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=1.884;SOR=0.927 GT:AD:DP:GQ:PL 0/1:40,36:76:99:773,0,855 2 107459974 . C T 2245.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;CNN_1D=-7.488;DP=208;ExcessHet=3.0103;FS=3.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.349;SOR=0.504 GT:AD:DP:GQ:PL 0/1:110,98:208:99:2253,0,2487 2 108443511 . C G 3119.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;CNN_1D=-11.134;DP=235;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-4.447;QD=13.27;ReadPosRankSum=2.449;SOR=0.790 GT:AD:DP:GQ:PL 0/1:100,135:235:99:3127,0,2083 2 108455303 . G T 163.93 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-1.356;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=26.60;QD=27.32;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,6:6:18:178,18,0 2 108475914 . C T 1497.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;CNN_1D=-7.633;DP=181;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=46.97;MQRankSum=0.904;QD=8.32;ReadPosRankSum=1.049;SOR=0.682 GT:AD:DP:GQ:PL 0/1:108,72:180:99:1505,0,2400 2 108475958 . A G 2471.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;CNN_1D=-7.106;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.90;MQRankSum=0.460;QD=13.15;ReadPosRankSum=0.449;SOR=0.686 GT:AD:DP:GQ:PL 0/1:78,110:188:99:2479,0,1660 2 108479432 . G A 286.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;CNN_1D=-4.000;DP=45;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=42.94;MQRankSum=-1.890;QD=6.37;ReadPosRankSum=1.349;SOR=0.445 GT:AD:DP:GQ:PL 0/1:30,15:45:99:294,0,754 2 108479487 . A T 283.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;CNN_1D=-2.266;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.23;MQRankSum=-1.011;QD=10.13;ReadPosRankSum=1.084;SOR=0.784 GT:AD:DP:GQ:PL 0/1:15,13:28:99:291,0,361 2 108487330 . A G 177.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.349;CNN_1D=-10.463;DP=71;ExcessHet=3.0103;FS=11.368;MLEAC=1;MLEAF=0.500;MQ=41.47;MQRankSum=-4.613;QD=2.50;ReadPosRankSum=-0.818;SOR=2.133 GT:AD:DP:GQ:PL 0/1:58,13:71:99:185,0,1456 2 108487826 . C T 655.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.891;CNN_1D=-11.247;DP=90;ExcessHet=3.0103;FS=28.655;MLEAC=1;MLEAF=0.500;MQ=45.72;MQRankSum=-4.879;QD=7.28;ReadPosRankSum=0.348;SOR=3.981 GT:AD:DP:GQ:PL 0/1:69,21:90:99:663,0,2807 2 108487829 . G C 658.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.317;CNN_1D=-11.516;DP=88;ExcessHet=3.0103;FS=26.202;MLEAC=1;MLEAF=0.500;MQ=45.76;MQRankSum=-4.817;QD=7.48;ReadPosRankSum=-0.024;SOR=3.959 GT:AD:DP:GQ:PL 0/1:67,21:88:99:666,0,2786 2 108487877 . T C 514.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.984;CNN_1D=0.543;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=36.09;MQRankSum=2.181;QD=18.38;ReadPosRankSum=0.798;SOR=1.044 GT:AD:DP:GQ:PL 0/1:7,21:28:99:522,0,134 2 108487901 . A G 245.01 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-3.427;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=24.00;QD=27.22;SOR=4.615 GT:AD:DP:GQ:PL 1/1:0,9:9:27:259,27,0 2 108488742 . G T 1858.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;CNN_1D=-12.363;DP=207;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=37.27;MQRankSum=-1.723;QD=8.98;ReadPosRankSum=1.704;SOR=0.638 GT:AD:DP:GQ:PL 0/1:118,89:207:99:1866,0,2685 2 108489362 . C T 687.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.684;CNN_1D=-0.603;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.05;MQRankSum=0.831;QD=15.99;ReadPosRankSum=-0.648;SOR=0.941 GT:AD:DP:GQ:PL 0/1:19,24:43:99:695,0,628 2 108496435 . T A 1089.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;CNN_1D=-1.850;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.49;MQRankSum=-0.353;QD=13.13;ReadPosRankSum=-0.028;SOR=0.775 GT:AD:DP:GQ:PL 0/1:37,46:83:99:1097,0,835 2 108863767 . A C 2972.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.468;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.85;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2986,309,0 2 108875198 . G A 1695.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;CNN_1D=-4.036;DP=145;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-1.031;SOR=0.841 GT:AD:DP:GQ:PL 0/1:71,74:145:99:1703,0,1526 2 108875244 . T C 4596.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.253;CNN_1D=-1.019;DP=171;ExcessHet=3.0103;FS=2.133;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.88;ReadPosRankSum=1.565;SOR=0.468 GT:AD:DP:GQ:PL 1/1:3,168:171:99:4610,425,0 2 109099572 . C G 1695.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.286;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.48;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1709,192,0 2 109103108 . C T 633.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;CNN_1D=0.068;DP=70;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.161;SOR=0.568 GT:AD:DP:GQ:PL 0/1:41,29:70:99:641,0,892 2 109106381 . A G 393.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;CNN_1D=-2.113;DP=81;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.817;SOR=0.580 GT:AD:DP:GQ:PL 0/1:58,23:81:99:401,0,1354 2 109276099 . G A 2611.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;CNN_1D=-13.852;DP=276;ExcessHet=3.0103;FS=2.025;MLEAC=1;MLEAF=0.500;MQ=42.78;MQRankSum=-0.357;QD=9.46;ReadPosRankSum=0.878;SOR=0.818 GT:AD:DP:GQ:PL 0/1:152,124:276:99:2619,0,3294 2 109276178 . C T 3521.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;CNN_1D=-16.081;DP=369;ExcessHet=3.0103;FS=2.203;MLEAC=1;MLEAF=0.500;MQ=48.74;MQRankSum=-1.420;QD=9.54;ReadPosRankSum=1.207;SOR=0.783 GT:AD:DP:GQ:PL 0/1:196,173:369:99:3529,0,4264 2 109293130 . A G 316.93 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;CNN_1D=0.078;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=36.62;MQRankSum=-1.562;QD=26.41;ReadPosRankSum=1.017;SOR=0.818 GT:AD:DP:GQ:PL 0/1:1,11:12:1:324,0,1 2 109389463 . G A 2860.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.049;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.32;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2874,302,0 2 109429146 . T A 2151.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.026;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.58;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2165,233,0 2 109513654 . G A 2072.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.604;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.38;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2086,219,0 2 109526969 . G A 3228.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.896;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.07;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3242,344,0 2 109745782 . TGGCCGGTCCCCGCCACGCA T 159.10 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.624;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.05;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,4:4:12:173,12,0 2 109745929 . C G 167.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;CNN_1D=0.628;DP=22;ExcessHet=3.0103;FS=4.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=0.376;SOR=1.911 GT:AD:DP:GQ:PL 0/1:14,8:22:99:175,0,374 2 110372192 . A G 2885.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.463;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.69;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2899,282,0 2 110373335 . C G 1845.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;CNN_1D=-3.764;DP=145;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=1.367;SOR=0.558 GT:AD:DP:GQ:PL 0/1:70,75:145:99:1853,0,1684 2 110922703 . C T 2660.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.681;CNN_1D=2.152;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=-1.146;SOR=0.776 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2674,250,0 2 111399366 . G A 1161.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;CNN_1D=-1.672;DP=108;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.138;SOR=0.802 GT:AD:DP:GQ:PL 0/1:56,52:108:99:1169,0,1253 2 111598958 . C T 258.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;CNN_1D=-1.782;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=1.102;SOR=0.661 GT:AD:DP:GQ:PL 0/1:59,18:77:99:266,0,1328 2 111899881 . G A 1117.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;CNN_1D=1.886;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=0.508;SOR=0.693 GT:AD:DP:GQ:PL 0/1:24,48:72:99:1125,0,408 2 111907691 . T C 1319.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;CNN_1D=-2.671;DP=129;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-0.087;SOR=0.799 GT:AD:DP:GQ:PL 0/1:69,60:129:99:1327,0,1640 2 112526866 . G A 810.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;CNN_1D=-0.344;DP=61;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=42.29;MQRankSum=1.807;QD=13.29;ReadPosRankSum=-0.745;SOR=0.562 GT:AD:DP:GQ:PL 0/1:23,38:61:99:818,0,449 2 112536264 . G T 1551.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-0.139;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=35.35;QD=28.72;SOR=1.835 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1565,162,0 2 112551673 . G A 68.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.943;CNN_1D=-8.531;DP=43;ExcessHet=3.0103;FS=11.598;MLEAC=1;MLEAF=0.500;MQ=44.80;MQRankSum=-3.683;QD=1.60;ReadPosRankSum=0.246;SOR=3.410 GT:AD:DP:GQ:PL 0/1:37,6:43:76:76,0,846 2 112552427 . C T 350.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;CNN_1D=-1.126;DP=23;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=34.69;MQRankSum=0.168;QD=15.24;ReadPosRankSum=0.528;SOR=1.609 GT:AD:DP:GQ:PL 0/1:10,13:23:99:358,0,245 2 112560090 . G A 40.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;CNN_1D=-5.126;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=27.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-1.036;SOR=1.609 GT:AD:DP:GQ:PL 0/1:3,2:5:48:48,0,80 2 112566517 . C T 297.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;CNN_1D=-3.242;DP=27;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=31.35;MQRankSum=0.803;QD=11.02;ReadPosRankSum=-0.171;SOR=1.402 GT:AD:DP:GQ:PL 0/1:15,12:27:99:305,0,377 2 112605302 . C T 766.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.299;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.55;QD=30.64;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,25:25:75:780,75,0 2 112615933 . T C 103.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;CNN_1D=-7.315;DP=75;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=-6.215;QD=1.38;ReadPosRankSum=1.100;SOR=0.735 GT:AD:DP:GQ:PL 0/1:62,13:75:99:111,0,1513 2 112619981 . G A 88.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.674;CNN_1D=-6.558;DP=23;ExcessHet=3.0103;FS=5.647;MLEAC=1;MLEAF=0.500;MQ=49.98;MQRankSum=-3.430;QD=3.85;ReadPosRankSum=-0.485;SOR=2.437 GT:AD:DP:GQ:PL 0/1:18,5:23:96:96,0,427 2 112832535 . CAAT C 331.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421;CNN_1D=1.275;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=0.267;SOR=0.743 GT:AD:DP:GQ:PL 0/1:13,9:22:99:339,0,717 2 112856165 . C A 588.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;CNN_1D=0.872;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=1.246;SOR=0.776 GT:AD:DP:GQ:PL 0/1:35,28:63:99:596,0,847 2 113082250 . CT C 1277.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.053;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.15;SOR=2.247 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1291,123,0 2 113089267 . T C 4600.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.380;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.17;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4614,429,0 2 113090047 . T C 2317.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.651;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.33;SOR=2.103 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2331,240,0 2 113145900 . A C 143.26 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.465;CNN_1D=-4.540;DP=7;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=27.49;MQRankSum=-1.465;QD=20.47;ReadPosRankSum=1.465;SOR=3.897 GT:AD:DP:GQ:PL 1/1:1,6:7:11:157,11,0 2 113147159 . G A 959.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;CNN_1D=-15.439;DP=257;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=38.61;MQRankSum=-1.924;QD=3.73;ReadPosRankSum=-1.852;SOR=0.639 GT:AD:DP:GQ:PL 0/1:193,64:257:99:967,0,4477 2 113147238 . A G 174.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.283;CNN_1D=-12.838;DP=95;ExcessHet=3.0103;FS=14.432;MLEAC=1;MLEAF=0.500;MQ=32.43;MQRankSum=-4.090;QD=1.84;ReadPosRankSum=1.853;SOR=3.319 GT:AD:DP:GQ:PL 0/1:80,15:95:99:182,0,2000 2 113258916 . C T 560.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;CNN_1D=-6.749;DP=69;ExcessHet=3.0103;FS=2.160;MLEAC=1;MLEAF=0.500;MQ=52.44;MQRankSum=-5.774;QD=8.24;ReadPosRankSum=-1.909;SOR=1.022 GT:AD:DP:GQ:PL 0/1:43,25:68:99:568,0,1009 2 113277949 . T C 1727.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;CNN_1D=-4.923;DP=158;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-1.854;SOR=0.694 GT:AD:DP:GQ:PL 0/1:76,82:158:99:1735,0,1541 2 113305150 . G C 1344.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;CNN_1D=-3.287;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-0.727;SOR=0.680 GT:AD:DP:GQ:PL 0/1:68,61:129:99:1352,0,1590 2 113308516 . T A 1421.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;CNN_1D=-1.916;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.560;SOR=0.716 GT:AD:DP:GQ:PL 0/1:59,64:123:99:1429,0,1281 2 113309473 . C T 1340.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;CNN_1D=-3.561;DP=138;ExcessHet=3.0103;FS=2.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.728;SOR=0.944 GT:AD:DP:GQ:PL 0/1:78,60:138:99:1348,0,1747 2 113498566 . A G 1185.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;CNN_1D=-0.112;DP=97;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=0.098;SOR=0.407 GT:AD:DP:GQ:PL 0/1:45,52:97:99:1193,0,1131 2 113513825 . T C 5251.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.903;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.64;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5265,569,0 2 113591162 . G A 1061.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;CNN_1D=0.231;DP=85;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=1.608;SOR=0.568 GT:AD:DP:GQ:PL 0/1:40,44:84:99:1069,0,984 2 113671378 . G T 3425.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.675;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3439,351,0 2 113671410 . A G 3493.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.305;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.94;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3507,374,0 2 113763463 . A C 1887.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;CNN_1D=-5.842;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=1.327;SOR=0.681 GT:AD:DP:GQ:PL 0/1:91,86:177:99:1895,0,2112 2 113763575 . A G 4196.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.883;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.55;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4210,426,0 2 113765587 . A T 617.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;CNN_1D=-0.699;DP=69;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.844;SOR=0.964 GT:AD:DP:GQ:PL 0/1:41,28:69:99:625,0,905 2 113832312 . T C 1542.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.059;CNN_1D=2.951;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.54;ReadPosRankSum=-1.921;SOR=1.118 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1556,119,0 2 113832333 . C A 1681.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.245;CNN_1D=3.195;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.98;ReadPosRankSum=-0.576;SOR=0.922 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1695,125,0 2 113956371 . G C 3890.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;CNN_1D=0.945;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.19;ReadPosRankSum=1.574;SOR=0.723 GT:AD:DP:GQ:PL 1/1:4,134:138:99:3904,315,0 2 116497479 . A G 2190.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.535;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.72;SOR=1.068 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2204,237,0 2 116510817 . G C 1051.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;CNN_1D=-0.688;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=3.143;SOR=0.729 GT:AD:DP:GQ:PL 0/1:49,50:99:99:1059,0,1081 2 116525960 . G A 2506.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.955;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.16;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2520,267,0 2 116599927 . T C 2355.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.576;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.71;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2369,255,0 2 118575215 . C G 528.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070;CNN_1D=0.332;DP=66;ExcessHet=3.0103;FS=3.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=-0.532;SOR=0.368 GT:AD:DP:GQ:PL 0/1:38,28:66:99:536,0,964 2 118731573 . G A 796.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;CNN_1D=-1.045;DP=90;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-0.788;SOR=0.814 GT:AD:DP:GQ:PL 0/1:50,40:90:99:804,0,1127 2 118771566 . C A 1670.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;CNN_1D=-2.715;DP=133;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-0.806;SOR=0.768 GT:AD:DP:GQ:PL 0/1:64,69:133:99:1678,0,1512 2 119915249 . T C 2095.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.497;CNN_1D=-3.559;DP=163;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=0.553;SOR=0.795 GT:AD:DP:GQ:PL 0/1:81,81:162:99:2103,0,1721 2 119915509 . G T 1148.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;CNN_1D=-1.596;DP=104;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=0.733;SOR=0.730 GT:AD:DP:GQ:PL 0/1:55,49:104:99:1156,0,1311 2 120060082 . T C 1230.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.891;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.74;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1244,137,0 2 120069281 . TA T 94.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;CNN_1D=-2.080;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.625;SOR=0.793 GT:AD:DP:GQ:PL 0/1:57,11:68:99:102,0,1240 2 120078778 . T C 438.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.879;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.38;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,16:16:48:452,48,0 2 120125029 . A G 2444.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;CNN_1D=-4.063;DP=167;ExcessHet=3.0103;FS=5.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=-1.735;SOR=0.609 GT:AD:DP:GQ:PL 0/1:71,95:166:99:2452,0,1721 2 120125053 . C G 2781.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.440;CNN_1D=-1.500;DP=139;ExcessHet=3.0103;FS=7.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.16;ReadPosRankSum=-0.288;SOR=0.549 GT:AD:DP:GQ:PL 0/1:66,72:138:99:2789,0,3379 2 120125058 . C T 2772.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;CNN_1D=-1.192;DP=141;ExcessHet=3.0103;FS=8.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.80;ReadPosRankSum=0.309;SOR=0.584 GT:AD:DP:GQ:PL 0/1:69,71:140:99:2780,0,3476 2 120194651 . A AGTGTGC 2485.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;CNN_1D=-1.936;DP=129;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.42;ReadPosRankSum=-0.895;SOR=0.586 GT:AD:DP:GQ:PL 0/1:67,61:128:99:2493,0,5554 2 120199140 . A G 1764.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;CNN_1D=-2.614;DP=140;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=0.251;SOR=0.622 GT:AD:DP:GQ:PL 0/1:59,81:140:99:1772,0,1098 2 120303820 . A T 1290.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;CNN_1D=-3.178;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=0.221;SOR=0.728 GT:AD:DP:GQ:PL 0/1:65,64:129:99:1298,0,1380 2 120369300 . T C 2312.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.035;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.86;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2326,249,0 2 120388412 . G A 4657.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.373;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.23;SOR=0.910 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4671,509,0 2 120404629 . AT A 701.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;CNN_1D=0.033;DP=47;ExcessHet=3.0103;FS=7.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=-1.041;SOR=0.105 GT:AD:DP:GQ:PL 0/1:8,35:43:50:709,0,50 2 120438523 . A G 4424.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.728;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.72;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4438,432,0 2 120438696 . A G 5480.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.807;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.14;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5494,528,0 2 120439230 . C G 4353.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.483;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.02;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4367,435,0 2 120885310 . G A 3185.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.719;CNN_1D=0.869;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.54;ReadPosRankSum=-1.846;SOR=0.914 GT:AD:DP:GQ:PL 1/1:2,118:120:99:3199,310,0 2 121036333 . G A 2706.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.783;CNN_1D=1.678;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.06;ReadPosRankSum=0.468;SOR=0.766 GT:AD:DP:GQ:PL 1/1:7,101:108:99:2720,136,0 2 121726447 . G A 3600.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.597;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3614,381,0 2 121746956 . G T 1847.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;CNN_1D=-3.748;DP=136;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-1.530;SOR=0.949 GT:AD:DP:GQ:PL 0/1:65,71:136:99:1855,0,1467 2 121747406 . G A 1733.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;CNN_1D=-2.227;DP=128;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=-1.814;SOR=0.612 GT:AD:DP:GQ:PL 0/1:56,71:127:99:1741,0,1321 2 121747429 . A G 1702.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;CNN_1D=-2.634;DP=128;ExcessHet=3.0103;FS=2.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-0.896;SOR=0.941 GT:AD:DP:GQ:PL 0/1:60,68:128:99:1710,0,1419 2 125192068 . T C 1240.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;CNN_1D=-1.851;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-1.711;SOR=0.736 GT:AD:DP:GQ:PL 0/1:51,57:108:99:1248,0,1124 2 127453664 . A C 1086.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;CNN_1D=-1.193;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=1.332;SOR=0.757 GT:AD:DP:GQ:PL 0/1:54,47:101:99:1094,0,1202 2 127819777 . C T 738.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;CNN_1D=-0.855;DP=78;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.916;SOR=0.527 GT:AD:DP:GQ:PL 0/1:41,37:78:99:746,0,926 2 127821499 . T C 1478.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;CNN_1D=-0.329;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=1.041;SOR=0.724 GT:AD:DP:GQ:PL 0/1:38,63:101:99:1486,0,752 2 128180872 . G T 3041.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.302;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.96;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3055,315,0 2 128321770 . G A 3083.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.003;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.78;SOR=0.951 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3097,333,0 2 128367092 . G A 1112.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;CNN_1D=-2.912;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=0.723;SOR=0.654 GT:AD:DP:GQ:PL 0/1:68,52:120:99:1120,0,1545 2 128379563 . C G 515.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;CNN_1D=2.291;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=2.472;SOR=0.693 GT:AD:DP:GQ:PL 0/1:12,22:34:99:523,0,180 2 128381808 . C T 1237.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;CNN_1D=-0.882;DP=107;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.701;SOR=0.587 GT:AD:DP:GQ:PL 0/1:53,54:107:99:1245,0,1163 2 128392242 . C T 1024.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;CNN_1D=-4.915;DP=140;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=-0.398;SOR=0.798 GT:AD:DP:GQ:PL 0/1:89,51:140:99:1032,0,2274 2 128392688 . C T 906.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;CNN_1D=-0.266;DP=80;ExcessHet=3.0103;FS=4.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=0.876;SOR=0.871 GT:AD:DP:GQ:PL 0/1:41,39:80:99:914,0,896 2 128400608 . C T 2289.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.961;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.91;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2303,246,0 2 128459473 . C A 384.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;CNN_1D=2.254;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=1.489;SOR=0.693 GT:AD:DP:GQ:PL 0/1:18,18:36:99:392,0,421 2 128459631 . GTGGCCGCGCTGC G 380.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;CNN_1D=0.589;DP=31;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=0.568;SOR=1.270 GT:AD:DP:GQ:PL 0/1:18,11:29:99:388,0,2316 2 128770731 . GA G 61.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;CNN_1D=-1.453;DP=36;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.135;SOR=1.214 GT:AD:DP:GQ:PL 0/1:28,6:34:69:69,0,596 2 128870808 . T C 2293.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.220;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.31;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2307,243,0 2 128878014 . G A 2066.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.062;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.55;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2080,224,0 2 128934400 . T C 1185.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;CNN_1D=-2.089;DP=109;ExcessHet=3.0103;FS=6.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.769;SOR=1.314 GT:AD:DP:GQ:PL 0/1:58,51:109:99:1193,0,1267 2 128939799 . C T 1493.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;CNN_1D=-4.450;DP=149;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=1.771;SOR=0.880 GT:AD:DP:GQ:PL 0/1:80,68:148:99:1501,0,1711 2 128939817 . G A 1413.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;CNN_1D=-3.334;DP=135;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.490;SOR=0.826 GT:AD:DP:GQ:PL 0/1:69,65:134:99:1421,0,1539 2 130738163 . G A 1723.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;CNN_1D=-6.265;DP=157;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=51.40;MQRankSum=-0.295;QD=10.98;ReadPosRankSum=-1.245;SOR=0.922 GT:AD:DP:GQ:PL 0/1:83,74:157:99:1731,0,1970 2 130832042 . G A 224.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;CNN_1D=-9.531;DP=28;ExcessHet=3.0103;FS=20.141;MLEAC=1;MLEAF=0.500;MQ=24.04;MQRankSum=-0.731;QD=8.02;ReadPosRankSum=-1.154;SOR=4.768 GT:AD:DP:GQ:PL 0/1:17,11:28:99:232,0,406 2 130832185 . G A 1852.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.660;CNN_1D=1.351;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=39.83;MQRankSum=1.023;QD=26.08;ReadPosRankSum=-0.659;SOR=0.363 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1866,181,0 2 130832292 . T A 1535.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;CNN_1D=-6.462;DP=101;ExcessHet=3.0103;FS=17.841;MLEAC=1;MLEAF=0.500;MQ=39.06;MQRankSum=-3.785;QD=15.20;ReadPosRankSum=3.290;SOR=0.946 GT:AD:DP:GQ:PL 0/1:30,71:101:99:1543,0,483 2 130832358 . T C 458.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.137;CNN_1D=-9.925;DP=71;ExcessHet=3.0103;FS=11.723;MLEAC=1;MLEAF=0.500;MQ=41.94;MQRankSum=-5.804;QD=6.46;ReadPosRankSum=-4.122;SOR=1.380 GT:AD:DP:GQ:PL 0/1:50,21:71:99:466,0,1136 2 130832444 . C A 424.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.789;CNN_1D=-12.708;DP=82;ExcessHet=3.0103;FS=38.167;MLEAC=1;MLEAF=0.500;MQ=51.90;MQRankSum=-5.915;QD=5.18;ReadPosRankSum=-0.135;SOR=5.528 GT:AD:DP:GQ:PL 0/1:64,18:82:99:432,0,1637 2 130832531 . A G 1074.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;CNN_1D=-9.982;DP=150;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-6.141;QD=7.16;ReadPosRankSum=1.570;SOR=0.955 GT:AD:DP:GQ:PL 0/1:95,55:150:99:1082,0,2181 2 130832598 . C T 1991.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;CNN_1D=-1.991;DP=187;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=5.319;QD=10.65;ReadPosRankSum=-0.260;SOR=0.858 GT:AD:DP:GQ:PL 0/1:96,91:187:99:1999,0,2176 2 130869609 . A G 146.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.464;CNN_1D=-6.255;DP=39;ExcessHet=3.0103;FS=3.469;MLEAC=1;MLEAF=0.500;MQ=51.69;MQRankSum=-4.534;QD=3.76;ReadPosRankSum=0.661;SOR=1.375 GT:AD:DP:GQ:PL 0/1:31,8:39:99:154,0,705 2 130872791 . A G 486.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;CNN_1D=-14.613;DP=174;ExcessHet=3.0103;FS=6.938;MLEAC=1;MLEAF=0.500;MQ=40.66;MQRankSum=-4.876;QD=2.81;ReadPosRankSum=-4.956;SOR=1.203 GT:AD:DP:GQ:PL 0/1:134,39:173:99:494,0,3134 2 130877752 . T C 1906.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;CNN_1D=-16.117;DP=277;ExcessHet=3.0103;FS=7.877;MLEAC=1;MLEAF=0.500;MQ=53.32;MQRankSum=-14.839;QD=6.88;ReadPosRankSum=0.585;SOR=1.119 GT:AD:DP:GQ:PL 0/1:180,97:277:99:1914,0,4256 2 130877956 . T C 4197.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;CNN_1D=-16.103;DP=451;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=50.47;MQRankSum=0.764;QD=10.90;ReadPosRankSum=0.298;SOR=0.602 GT:AD:DP:GQ:PL 0/1:191,194:385:99:4205,0,3974 2 130897234 . C T 1644.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;CNN_1D=-2.397;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.113;QD=14.43;ReadPosRankSum=1.453;SOR=0.693 GT:AD:DP:GQ:PL 0/1:44,70:114:99:1652,0,940 2 130897620 . A G 462.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;CNN_1D=-11.704;DP=96;ExcessHet=3.0103;FS=10.263;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-9.189;QD=4.82;ReadPosRankSum=-0.554;SOR=1.844 GT:AD:DP:GQ:PL 0/1:72,24:96:99:470,0,1967 2 130899804 . T C 1021.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.861;CNN_1D=-15.743;DP=180;ExcessHet=3.0103;FS=8.814;MLEAC=1;MLEAF=0.500;MQ=49.20;MQRankSum=-10.302;QD=5.71;ReadPosRankSum=2.747;SOR=1.336 GT:AD:DP:GQ:PL 0/1:130,49:179:99:1029,0,3218 2 130902549 . C T 420.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.044;CNN_1D=-1.682;DP=33;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=47.08;MQRankSum=-0.636;QD=12.75;ReadPosRankSum=-0.398;SOR=1.230 GT:AD:DP:GQ:PL 0/1:18,15:33:99:428,0,452 2 130925088 . C T 1250.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;CNN_1D=-0.578;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-0.828;SOR=0.669 GT:AD:DP:GQ:PL 0/1:42,58:100:99:1258,0,764 2 130949411 . G T 1221.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;CNN_1D=-4.923;DP=120;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-2.652;QD=10.18;ReadPosRankSum=3.117;SOR=0.863 GT:AD:DP:GQ:PL 0/1:65,55:120:99:1229,0,1348 2 130949491 . G A 1199.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;CNN_1D=-12.501;DP=152;ExcessHet=3.0103;FS=2.975;MLEAC=1;MLEAF=0.500;MQ=54.22;MQRankSum=-8.396;QD=7.89;ReadPosRankSum=-2.470;SOR=0.944 GT:AD:DP:GQ:PL 0/1:96,56:152:99:1207,0,2204 2 130949553 . A G 870.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;CNN_1D=-12.451;DP=127;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.500;MQ=52.82;MQRankSum=-10.652;QD=6.86;ReadPosRankSum=2.851;SOR=0.654 GT:AD:DP:GQ:PL 0/1:84,43:127:99:878,0,2060 2 130951488 . A G 446.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;CNN_1D=-16.066;DP=220;ExcessHet=3.0103;FS=29.077;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-8.941;QD=2.05;ReadPosRankSum=-1.465;SOR=2.756 GT:AD:DP:GQ:PL 0/1:182,36:218:99:454,0,4672 2 130951548 . G A 5665.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.048;CNN_1D=-9.295;DP=319;ExcessHet=3.0103;FS=4.901;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=2.733;QD=17.76;ReadPosRankSum=0.151;SOR=0.476 GT:AD:DP:GQ:PL 0/1:92,227:319:99:5673,0,1503 2 130951566 . G A 5684.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;CNN_1D=-12.548;DP=347;ExcessHet=3.0103;FS=3.921;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=2.204;QD=16.48;ReadPosRankSum=-1.704;SOR=0.511 GT:AD:DP:GQ:PL 0/1:100,245:345:99:5692,0,1673 2 130951581 . A G 3975.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;CNN_1D=-16.116;DP=370;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-7.644;QD=10.74;ReadPosRankSum=-0.937;SOR=0.575 GT:AD:DP:GQ:PL 0/1:257,113:370:99:3983,0,10411 2 130951584 . T C 3942.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;CNN_1D=-16.116;DP=373;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-7.885;QD=10.57;ReadPosRankSum=-0.549;SOR=0.601 GT:AD:DP:GQ:PL 0/1:260,113:373:99:3950,0,10445 2 130951754 . G T 1154.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;CNN_1D=-15.606;DP=326;ExcessHet=3.0103;FS=3.740;MLEAC=1;MLEAF=0.500;MQ=49.29;MQRankSum=0.977;QD=3.54;ReadPosRankSum=-0.089;SOR=0.962 GT:AD:DP:GQ:PL 0/1:253,73:326:99:1162,0,6137 2 130951848 . T C 646.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.602;CNN_1D=-16.001;DP=179;ExcessHet=3.0103;FS=24.926;MLEAC=1;MLEAF=0.500;MQ=50.57;MQRankSum=-9.315;QD=3.61;ReadPosRankSum=-0.193;SOR=2.568 GT:AD:DP:GQ:PL 0/1:145,34:179:99:654,0,3640 2 130951949 . G A 644.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;CNN_1D=-11.138;DP=135;ExcessHet=3.0103;FS=7.462;MLEAC=1;MLEAF=0.500;MQ=52.27;MQRankSum=-8.387;QD=4.77;ReadPosRankSum=3.245;SOR=0.884 GT:AD:DP:GQ:PL 0/1:97,38:135:99:652,0,2464 2 130952038 . G A 433.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;CNN_1D=-9.695;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-8.051;QD=4.93;ReadPosRankSum=-1.236;SOR=0.727 GT:AD:DP:GQ:PL 0/1:63,25:88:99:441,0,1622 2 130952718 . G A 455.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.696;CNN_1D=-13.705;DP=153;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-9.690;QD=3.00;ReadPosRankSum=1.313;SOR=0.655 GT:AD:DP:GQ:PL 0/1:121,31:152:99:463,0,5696 2 130952725 . C T 993.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.836;CNN_1D=-14.848;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.50;MQRankSum=-10.741;QD=6.21;ReadPosRankSum=1.172;SOR=0.743 GT:AD:DP:GQ:PL 0/1:126,34:160:99:1001,0,2876 2 131221102 . T C 1745.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=0.553;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=35.61;QD=29.58;SOR=1.903 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1759,177,0 2 131221170 . C T 4179.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.987;CNN_1D=-3.406;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=42.65;MQRankSum=-0.257;QD=26.79;ReadPosRankSum=1.311;SOR=0.372 GT:AD:DP:GQ:PL 1/1:1,155:156:99:4193,429,0 2 131221445 . G A 361.02 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-0.973;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=35.23;QD=32.82;SOR=4.977 GT:AD:DP:GQ:PL 1/1:0,11:11:33:375,33,0 2 131221499 . G A 104.10 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-1.794;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=24.75;QD=26.02;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,4:4:12:118,12,0 2 131232011 . C T 188.98 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-2.801;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=24.29;QD=27.00;SOR=4.174 GT:AD:DP:GQ:PL 1/1:0,7:7:21:203,21,0 2 131245713 . C G 63.28 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.445;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;QD=31.64;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:6:75,6,0 2 131266530 . C A 10039.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.095;CNN_1D=-10.408;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQRankSum=1.708;QD=27.96;ReadPosRankSum=-1.240;SOR=0.256 GT:AD:DP:GQ:PL 1/1:1,358:359:99:10053,1033,0 2 131377707 . A G 191.93 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-0.357;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=32.35;QD=31.99;SOR=3.912 GT:AD:DP:GQ:PL 1/1:0,6:6:18:206,18,0 2 131414176 . C T 1628.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;CNN_1D=-6.915;DP=174;ExcessHet=3.0103;FS=2.887;MLEAC=1;MLEAF=0.500;MQ=53.96;MQRankSum=-1.233;QD=9.36;ReadPosRankSum=0.079;SOR=0.470 GT:AD:DP:GQ:PL 0/1:99,75:174:99:1636,0,2521 2 131414394 . C T 2475.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;CNN_1D=-15.800;DP=311;ExcessHet=3.0103;FS=14.186;MLEAC=1;MLEAF=0.500;MQ=44.83;MQRankSum=-1.642;QD=7.96;ReadPosRankSum=0.134;SOR=0.965 GT:AD:DP:GQ:PL 0/1:187,124:311:99:2483,0,4594 2 131414975 . A T 194.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;CNN_1D=-15.486;DP=178;ExcessHet=3.0103;FS=10.033;MLEAC=1;MLEAF=0.500;MQ=46.14;MQRankSum=-7.837;QD=1.09;ReadPosRankSum=0.841;SOR=1.312 GT:AD:DP:GQ:PL 0/1:150,28:178:99:202,0,3672 2 131487673 . A C 3314.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.498;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.57;SOR=1.140 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3328,347,0 2 131520178 . C G 847.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;CNN_1D=0.731;DP=77;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-0.660;SOR=0.890 GT:AD:DP:GQ:PL 0/1:42,35:77:99:855,0,1052 2 131520663 . T C 4207.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.541;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.11;SOR=0.983 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4221,393,0 2 131688587 . G A 1003.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;CNN_1D=-2.281;DP=103;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-1.325;SOR=0.936 GT:AD:DP:GQ:PL 0/1:56,47:103:99:1011,0,1242 2 131688783 . G A 903.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;CNN_1D=-0.163;DP=89;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.852;SOR=0.601 GT:AD:DP:GQ:PL 0/1:47,40:87:99:911,0,1078 2 131976272 . G C 7935.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.078;CNN_1D=-11.124;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.94;MQRankSum=-2.510;QD=29.94;ReadPosRankSum=-0.616;SOR=0.847 GT:AD:DP:GQ:PL 1/1:2,263:265:99:7949,742,0 2 131985945 . A G 156.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;CNN_1D=-5.003;DP=63;ExcessHet=3.0103;FS=2.918;MLEAC=1;MLEAF=0.500;MQ=35.96;MQRankSum=1.581;QD=2.49;ReadPosRankSum=0.190;SOR=0.337 GT:AD:DP:GQ:PL 0/1:52,11:63:99:164,0,1279 2 132021946 . G A 623.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;CNN_1D=-8.390;DP=126;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=32.97;MQRankSum=-0.218;QD=4.95;ReadPosRankSum=-0.751;SOR=0.547 GT:AD:DP:GQ:PL 0/1:90,36:126:99:631,0,2308 2 132022031 . C T 347.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.822;CNN_1D=-6.311;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=27.32;MQRankSum=-1.237;QD=7.40;ReadPosRankSum=-0.798;SOR=0.249 GT:AD:DP:GQ:PL 0/1:31,16:47:99:355,0,810 2 132233785 . G A 1772.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;CNN_1D=-8.169;DP=162;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=54.36;MQRankSum=-5.286;QD=10.94;ReadPosRankSum=1.545;SOR=0.571 GT:AD:DP:GQ:PL 0/1:83,79:162:99:1780,0,1870 2 132237927 . C A 412.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;CNN_1D=-9.020;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.30;MQRankSum=-0.248;QD=3.13;ReadPosRankSum=-1.920;SOR=0.693 GT:AD:DP:GQ:PL 0/1:102,30:132:99:420,0,2615 2 132237983 . A G 2164.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.814;CNN_1D=-2.103;DP=82;ExcessHet=3.0103;FS=1.847;MLEAC=2;MLEAF=1.00;MQ=40.25;MQRankSum=-2.628;QD=26.39;ReadPosRankSum=0.291;SOR=0.762 GT:AD:DP:GQ:PL 1/1:5,77:82:99:2178,110,0 2 132238169 . A G 635.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;CNN_1D=-14.994;DP=137;ExcessHet=3.0103;FS=25.896;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=-10.117;QD=4.64;ReadPosRankSum=-0.373;SOR=2.201 GT:AD:DP:GQ:PL 0/1:104,33:137:99:643,0,2694 2 132238286 . C T 1177.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.979;CNN_1D=-8.313;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-6.238;QD=10.51;ReadPosRankSum=-0.146;SOR=0.654 GT:AD:DP:GQ:PL 0/1:58,54:112:99:1185,0,1468 2 132241704 . C T 1184.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;CNN_1D=-8.663;DP=179;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.916;QD=6.62;ReadPosRankSum=0.782;SOR=0.853 GT:AD:DP:GQ:PL 0/1:116,63:179:99:1192,0,2615 2 132241731 . T C 1297.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;CNN_1D=-7.644;DP=167;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-2.522;QD=7.77;ReadPosRankSum=-0.611;SOR=0.687 GT:AD:DP:GQ:PL 0/1:102,65:167:99:1305,0,2296 2 132249600 . G A 1807.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.276;CNN_1D=-0.255;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.64;MQRankSum=1.048;QD=19.86;ReadPosRankSum=-1.171;SOR=0.638 GT:AD:DP:GQ:PL 0/1:45,46:91:99:1815,0,2679 2 132249605 . G A 1837.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;CNN_1D=-0.332;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.07;MQRankSum=1.022;QD=19.34;ReadPosRankSum=-0.812;SOR=0.641 GT:AD:DP:GQ:PL 0/1:47,48:95:99:1845,0,2698 2 132249916 . AC A 933.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;CNN_1D=-1.519;DP=90;ExcessHet=3.0103;FS=4.162;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=1.739;QD=10.86;ReadPosRankSum=-1.051;SOR=0.572 GT:AD:DP:GQ:PL 0/1:50,36:86:99:941,0,1420 2 132288315 . G A 537.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.718;CNN_1D=-10.838;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.46;MQRankSum=-1.332;QD=3.51;ReadPosRankSum=-0.332;SOR=0.648 GT:AD:DP:GQ:PL 0/1:118,35:153:99:545,0,2676 2 132288362 . T C 1986.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.418;CNN_1D=-4.625;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=35.15;MQRankSum=-4.205;QD=26.13;ReadPosRankSum=-1.321;SOR=0.968 GT:AD:DP:GQ:PL 1/1:5,71:76:90:2000,90,0 2 132289293 . T C 398.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;CNN_1D=-5.095;DP=19;ExcessHet=3.0103;FS=10.132;MLEAC=1;MLEAF=0.500;MQ=34.75;MQRankSum=-3.295;QD=20.98;ReadPosRankSum=0.250;SOR=4.047 GT:AD:DP:GQ:PL 0/1:4,15:19:42:406,0,42 2 132290464 . G A 1830.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.563;CNN_1D=-1.931;DP=147;ExcessHet=3.0103;FS=4.922;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=1.695;QD=12.45;ReadPosRankSum=0.466;SOR=0.551 GT:AD:DP:GQ:PL 0/1:70,77:147:99:1838,0,1913 2 133489601 . A G 954.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;CNN_1D=-0.879;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=0.638;SOR=0.646 GT:AD:DP:GQ:PL 0/1:57,38:95:99:962,0,1433 2 133539566 . G A 1345.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.778;CNN_1D=-1.386;DP=119;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=0.016;SOR=0.462 GT:AD:DP:GQ:PL 0/1:56,63:119:99:1353,0,1395 2 133541107 . T A 2364.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.756;CNN_1D=-7.121;DP=208;ExcessHet=3.0103;FS=6.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.172;SOR=0.749 GT:AD:DP:GQ:PL 0/1:100,108:208:99:2372,0,2458 2 133541444 . T C 2960.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;CNN_1D=-1.627;DP=149;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.87;ReadPosRankSum=1.340;SOR=1.022 GT:AD:DP:GQ:PL 0/1:74,75:149:99:2968,0,3809 2 133541454 . A G 2933.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;CNN_1D=-1.635;DP=149;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.69;ReadPosRankSum=1.217;SOR=1.016 GT:AD:DP:GQ:PL 0/1:73,76:149:99:2941,0,3834 2 133541575 . C T 1426.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;CNN_1D=-1.929;DP=109;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=0.990;SOR=0.772 GT:AD:DP:GQ:PL 0/1:49,60:109:99:1434,0,1179 2 133542014 . T C 1635.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;CNN_1D=-2.089;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=1.655;SOR=0.750 GT:AD:DP:GQ:PL 0/1:64,70:134:99:1643,0,1517 2 133542574 . C T 1465.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;CNN_1D=-2.624;DP=131;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=1.778;SOR=0.510 GT:AD:DP:GQ:PL 0/1:67,64:131:99:1473,0,1552 2 133554288 . A G 1123.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;CNN_1D=-1.286;DP=99;ExcessHet=3.0103;FS=6.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.550;SOR=1.046 GT:AD:DP:GQ:PL 0/1:52,47:99:99:1131,0,1127 2 135677471 . A AGTTT 927.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;CNN_1D=0.812;DP=47;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.17;ReadPosRankSum=-2.019;SOR=0.368 GT:AD:DP:GQ:PL 0/1:21,25:46:99:935,0,1134 2 135711516 . C T 1472.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;CNN_1D=-0.852;DP=108;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=1.192;SOR=0.822 GT:AD:DP:GQ:PL 0/1:44,64:108:99:1480,0,1025 2 135711657 . G A 1725.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.355;CNN_1D=-2.923;DP=142;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=-1.053;SOR=0.460 GT:AD:DP:GQ:PL 0/1:67,74:141:99:1733,0,1677 2 135745392 . G A 1005.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;CNN_1D=1.319;DP=75;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=0.138;SOR=0.498 GT:AD:DP:GQ:PL 0/1:34,41:75:99:1013,0,860 2 135745545 . C T 1126.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;CNN_1D=-0.535;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-1.002;SOR=0.656 GT:AD:DP:GQ:PL 0/1:48,47:95:99:1134,0,1145 2 135745722 . A G 1238.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;CNN_1D=-0.474;DP=95;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=-1.237;SOR=0.794 GT:AD:DP:GQ:PL 0/1:41,54:95:99:1246,0,916 2 135893372 . A G 1672.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;CNN_1D=-2.739;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=0.913;SOR=0.668 GT:AD:DP:GQ:PL 0/1:55,73:128:99:1680,0,1171 2 135911422 . T C 1593.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;CNN_1D=-1.767;DP=121;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-2.279;SOR=0.533 GT:AD:DP:GQ:PL 0/1:51,70:121:99:1601,0,1184 2 136148394 . GA G 293.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;CNN_1D=-2.671;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.992;SOR=0.892 GT:AD:DP:GQ:PL 0/1:16,20:36:99:301,0,160 2 136393658 . A G 811.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;CNN_1D=-0.162;DP=80;ExcessHet=3.0103;FS=4.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-0.700;SOR=0.892 GT:AD:DP:GQ:PL 0/1:43,37:80:99:819,0,975 2 136396300 . T C 923.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;CNN_1D=-0.568;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.262;SOR=0.658 GT:AD:DP:GQ:PL 0/1:48,43:91:99:931,0,1136 2 136511817 . A G 507.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;CNN_1D=-1.340;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.039;SOR=0.723 GT:AD:DP:GQ:PL 0/1:55,27:82:99:515,0,1228 2 136546110 . A G 1078.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;CNN_1D=-1.785;DP=104;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-0.844;SOR=0.916 GT:AD:DP:GQ:PL 0/1:55,49:104:99:1086,0,1303 2 136555659 . T C 1787.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;CNN_1D=-4.189;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=0.341;SOR=0.709 GT:AD:DP:GQ:PL 0/1:71,80:151:99:1795,0,1523 2 136561557 . G A 1754.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;CNN_1D=-4.574;DP=157;ExcessHet=3.0103;FS=2.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-1.011;SOR=0.730 GT:AD:DP:GQ:PL 0/1:74,83:157:99:1762,0,1704 2 136575199 . G T 1549.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;CNN_1D=-2.646;DP=130;ExcessHet=3.0103;FS=5.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-1.444;SOR=0.357 GT:AD:DP:GQ:PL 0/1:66,64:130:99:1557,0,1722 2 136575534 . T C 4083.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.679;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.59;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4097,414,0 2 136590746 . C T 1056.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;CNN_1D=-0.054;DP=84;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-0.210;SOR=0.676 GT:AD:DP:GQ:PL 0/1:34,50:84:99:1064,0,676 2 136594158 . G A 1985.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;CNN_1D=-3.645;DP=147;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-1.312;SOR=0.634 GT:AD:DP:GQ:PL 0/1:63,84:147:99:1993,0,1452 2 136690414 . TA T 431.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;CNN_1D=-1.246;DP=51;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=0.665;SOR=1.013 GT:AD:DP:GQ:PL 0/1:26,20:46:99:439,0,1009 2 137814477 . C G 1387.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;CNN_1D=-3.723;DP=133;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=-0.378;SOR=0.515 GT:AD:DP:GQ:PL 0/1:69,64:133:99:1395,0,1628 2 137814489 . T G 1550.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;CNN_1D=-2.970;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=1.637;SOR=0.754 GT:AD:DP:GQ:PL 0/1:66,66:132:99:1558,0,1520 2 137852698 . C T 571.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;CNN_1D=1.901;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-0.770;SOR=0.634 GT:AD:DP:GQ:PL 0/1:25,24:49:99:579,0,553 2 137928320 . C T 471.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;CNN_1D=0.315;DP=54;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-1.277;SOR=0.459 GT:AD:DP:GQ:PL 0/1:32,22:54:99:479,0,826 2 137990593 . T G 924.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;CNN_1D=-0.784;DP=93;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=1.363;SOR=0.837 GT:AD:DP:GQ:PL 0/1:49,44:93:99:932,0,1095 2 138375972 . A T 1318.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;CNN_1D=-2.850;DP=115;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-1.841;SOR=0.768 GT:AD:DP:GQ:PL 0/1:54,61:115:99:1326,0,1192 2 138414460 . A G 1812.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;CNN_1D=-7.786;DP=204;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=0.089;SOR=0.632 GT:AD:DP:GQ:PL 0/1:114,89:203:99:1820,0,2641 2 138420996 . A G 1983.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.572;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.98;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1997,192,0 2 139308127 . G A 434.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;CNN_1D=1.312;DP=60;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.054;SOR=0.483 GT:AD:DP:GQ:PL 0/1:36,23:59:99:442,0,910 2 139429068 . G A 3931.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.111;CNN_1D=1.290;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.12;ReadPosRankSum=-1.421;SOR=0.802 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3945,356,0 2 141032088 . C T 2425.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.465;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.36;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2439,275,0 2 141259283 . G A 765.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;CNN_1D=-2.621;DP=106;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-0.389;SOR=0.962 GT:AD:DP:GQ:PL 0/1:68,37:105:99:773,0,1593 2 141259376 . G A 1300.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;CNN_1D=-3.835;DP=148;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=1.579;SOR=0.559 GT:AD:DP:GQ:PL 0/1:79,67:146:99:1308,0,1709 2 141260668 . A G 1032.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;CNN_1D=-1.787;DP=107;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.722;SOR=0.941 GT:AD:DP:GQ:PL 0/1:58,49:107:99:1040,0,1315 2 141274576 . T C 2151.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.684;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.07;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2165,222,0 2 141294285 . G GA 147.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;CNN_1D=-0.248;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-1.333;SOR=0.593 GT:AD:DP:GQ:PL 0/1:26,10:36:99:155,0,486 2 141457985 . T A 1386.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;CNN_1D=0.334;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-0.290;SOR=0.779 GT:AD:DP:GQ:PL 0/1:37,58:95:99:1394,0,790 2 141533662 . T C 1988.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.387;CNN_1D=3.654;DP=73;ExcessHet=3.0103;FS=3.070;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.23;ReadPosRankSum=0.783;SOR=0.311 GT:AD:DP:GQ:PL 1/1:1,72:73:99:2002,181,0 2 141571329 . T C 2539.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.200;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.65;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2553,295,0 2 141625834 . T TA 56.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;CNN_1D=-3.668;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.148;SOR=0.495 GT:AD:DP:GQ:PL 0/1:19,8:27:64:64,0,282 2 141709419 . T G 613.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;CNN_1D=-0.222;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-1.079;SOR=0.759 GT:AD:DP:GQ:PL 0/1:47,28:75:99:621,0,1069 2 141751592 . G A 759.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;CNN_1D=-1.153;DP=82;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.066;SOR=1.093 GT:AD:DP:GQ:PL 0/1:47,35:82:99:767,0,1014 2 141816621 . A G 1186.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.126;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.93;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1200,123,0 2 142567910 . T C 3963.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.794;CNN_1D=-0.080;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.96;ReadPosRankSum=-0.192;SOR=0.823 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3977,391,0 2 144194565 . C T 1797.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.028;CNN_1D=3.930;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.65;ReadPosRankSum=1.464;SOR=0.859 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1811,145,0 2 144899559 . C A 1904.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.707;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.85;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1918,198,0 2 148657117 . G A 769.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;CNN_1D=1.003;DP=70;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-1.928;SOR=0.825 GT:AD:DP:GQ:PL 0/1:35,35:70:99:777,0,749 2 148701099 . GA G 264.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;CNN_1D=-0.579;DP=39;ExcessHet=3.0103;FS=6.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-0.441;SOR=0.707 GT:AD:DP:GQ:PL 0/1:16,18:34:99:272,0,255 2 148716428 . T C 493.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;CNN_1D=2.049;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-0.212;SOR=0.538 GT:AD:DP:GQ:PL 0/1:22,22:44:99:501,0,496 2 150432976 . C T 1510.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.696;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.96;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1524,161,0 2 151328284 . GA G 1088.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.017;CNN_1D=1.538;DP=57;ExcessHet=3.0103;FS=2.119;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=21.76;ReadPosRankSum=0.429;SOR=0.262 GT:AD:DP:GQ:PL 1/1:4,46:50:42:1102,42,0 2 152138522 . T C 383.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;CNN_1D=-0.492;DP=64;ExcessHet=3.0103;FS=5.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.217;SOR=1.362 GT:AD:DP:GQ:PL 0/1:44,20:64:99:391,0,1003 2 152139416 . G A 219.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;CNN_1D=2.234;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=1.294;SOR=0.693 GT:AD:DP:GQ:PL 0/1:16,10:26:99:227,0,341 2 152236045 . TA T 171.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;CNN_1D=-0.616;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=0.488;SOR=0.627 GT:AD:DP:GQ:PL 0/1:23,13:36:99:179,0,456 2 152311570 . G A 3361.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.093;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.48;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3375,354,0 2 152314385 . G A 505.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;CNN_1D=1.704;DP=52;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-1.075;SOR=0.473 GT:AD:DP:GQ:PL 0/1:28,24:52:99:513,0,664 2 152320118 . G A 2419.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.261;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.24;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2433,239,0 2 152322095 . A T 4722.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.131;CNN_1D=-0.700;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.15;ReadPosRankSum=0.296;SOR=0.744 GT:AD:DP:GQ:PL 1/1:2,160:162:99:4736,436,0 2 152331418 . C G 1908.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.322;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.06;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1922,202,0 2 152346979 . T C 1406.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;CNN_1D=-2.400;DP=123;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.713;SOR=0.781 GT:AD:DP:GQ:PL 0/1:57,66:123:99:1414,0,1255 2 152352843 . C G 3559.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.545;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.62;QD=28.02;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3573,380,0 2 152387553 . T C 2566.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.471;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.18;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2580,292,0 2 152388415 . AT A 2753.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.792;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.39;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2767,223,0 2 152402515 . T TA,TAA 572.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.043;CNN_1D=-1.761;DP=56;ExcessHet=3.0103;FS=3.462;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=0.250;SOR=0.477 GT:AD:DP:GQ:PL 1/2:9,16,20:45:99:589,150,222,102,0,295 2 152420361 . C T 1281.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;CNN_1D=-2.044;DP=117;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.418;SOR=0.476 GT:AD:DP:GQ:PL 0/1:63,54:117:99:1289,0,1579 2 152422076 . C G 1743.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.662;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.13;SOR=1.302 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1757,168,0 2 152422087 . A G 1601.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.324;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.67;SOR=1.345 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1615,147,0 2 152424933 . T TA 728.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;CNN_1D=0.290;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=0.996;SOR=0.534 GT:AD:DP:GQ:PL 0/1:15,40:55:99:736,0,224 2 152436012 . T G 2043.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;CNN_1D=-7.435;DP=162;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=34.29;MQRankSum=0.655;QD=12.61;ReadPosRankSum=0.868;SOR=0.905 GT:AD:DP:GQ:PL 0/1:65,97:162:99:2051,0,1217 2 152448640 . T C 30.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;CNN_1D=-15.511;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.94;MQRankSum=-7.513;QD=0.15;ReadPosRankSum=-1.610;SOR=0.767 GT:AD:DP:GQ:PL 0/1:175,24:199:38:38,0,4175 2 152459116 . G A 52.28 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=-0.569;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=27.00;QD=26.14;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:6:64,6,0 2 152490219 . A G 3117.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;CNN_1D=1.079;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQRankSum=0.000;QD=26.42;ReadPosRankSum=-1.710;SOR=1.047 GT:AD:DP:GQ:PL 1/1:2,116:118:99:3131,304,0 2 152490458 . A G 3083.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.194;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.28;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3097,327,0 2 152527572 . C T 5347.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.106;CNN_1D=-3.486;DP=195;ExcessHet=3.0103;FS=3.687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.56;ReadPosRankSum=-0.286;SOR=0.728 GT:AD:DP:GQ:PL 1/1:1,193:194:99:5361,542,0 2 152531077 . A G 2082.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.619;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.92;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2096,216,0 2 152536498 . T A 1055.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;CNN_1D=0.549;DP=86;ExcessHet=3.0103;FS=2.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=0.529;SOR=0.529 GT:AD:DP:GQ:PL 0/1:39,47:86:99:1063,0,925 2 152537351 . C T 710.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;CNN_1D=1.498;DP=59;ExcessHet=3.0103;FS=3.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=0.630;SOR=0.958 GT:AD:DP:GQ:PL 0/1:28,31:59:99:718,0,605 2 152573981 . A G 817.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;CNN_1D=1.257;DP=64;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=1.232;SOR=0.693 GT:AD:DP:GQ:PL 0/1:28,36:64:99:825,0,603 2 153000337 . T A 1376.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.981;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.28;SOR=1.378 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1390,141,0 2 153378459 . T C 1544.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.016;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.09;SOR=0.800 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1558,171,0 2 153405594 . G A 2034.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.278;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.25;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2048,216,0 2 153415244 . T C 1775.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;CNN_1D=-0.163;DP=79;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.48;ReadPosRankSum=1.284;SOR=0.822 GT:AD:DP:GQ:PL 0/1:31,48:79:99:1783,0,1145 2 153476066 . G GCCA 1835.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.826;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.86;SOR=3.160 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1849,134,0 2 153481943 . T C 2019.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.734;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.26;SOR=1.296 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2033,207,0 2 155711357 . T C 1373.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;CNN_1D=-3.392;DP=137;ExcessHet=3.0103;FS=2.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.905;SOR=0.511 GT:AD:DP:GQ:PL 0/1:74,62:136:99:1381,0,1626 2 157352734 . CT C 32.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;CNN_1D=-1.278;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-1.583;SOR=0.713 GT:AD:DP:GQ:PL 0/1:28,5:33:40:40,0,650 2 157370018 . G GT 157.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;CNN_1D=-0.757;DP=67;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=1.246;SOR=0.475 GT:AD:DP:GQ:PL 0/1:45,15:60:99:165,0,838 2 157406249 . G A 1463.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;CNN_1D=-3.059;DP=124;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=-0.073;SOR=0.923 GT:AD:DP:GQ:PL 0/1:56,68:124:99:1471,0,1194 2 158115129 . A T 2134.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;CNN_1D=-6.219;DP=195;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-0.804;SOR=0.711 GT:AD:DP:GQ:PL 0/1:100,94:194:99:2142,0,2211 2 158157361 . C T 5270.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.627;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.33;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5284,557,0 2 158275111 . T TA 121.65 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;CNN_1D=-1.720;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.842;SOR=1.179 GT:AD:DP:GQ:PL 0/1:4,8:12:32:129,0,32 2 158395079 . C G 1463.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.321;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.14;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1477,156,0 2 158626980 . C T 3432.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.679;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.84;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3446,355,0 2 158636910 . G A 3264.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.177;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.14;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3278,336,0 2 159166069 . T C 2340.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.624;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.54;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2354,245,0 2 159477867 . A C 1030.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;CNN_1D=-4.698;DP=132;ExcessHet=3.0103;FS=2.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-1.591;SOR=0.931 GT:AD:DP:GQ:PL 0/1:76,54:130:99:1038,0,1619 2 159499191 . A T 896.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;CNN_1D=-0.870;DP=99;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=1.379;SOR=0.535 GT:AD:DP:GQ:PL 0/1:54,44:98:99:904,0,1330 2 159660870 . C T 1026.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;CNN_1D=-0.728;DP=91;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.727;SOR=0.839 GT:AD:DP:GQ:PL 0/1:45,46:91:99:1034,0,895 2 159663599 . T C 1230.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;CNN_1D=-2.615;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-1.928;SOR=0.659 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1238,0,1193 2 159672252 . G A 964.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;CNN_1D=-1.649;DP=108;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=0.976;SOR=1.004 GT:AD:DP:GQ:PL 0/1:62,46:108:99:972,0,1318 2 160019863 . A G 3673.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.292;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.47;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3687,386,0 2 160035207 . T C 3476.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.764;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.46;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3490,354,0 2 160084473 . A C 2919.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.982;CNN_1D=1.273;DP=112;ExcessHet=3.0103;FS=1.818;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.06;ReadPosRankSum=0.444;SOR=0.724 GT:AD:DP:GQ:PL 1/1:5,107:112:99:2933,227,0 2 160086653 . C T 5127.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.833;CNN_1D=2.076;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.57;ReadPosRankSum=-1.363;SOR=0.403 GT:AD:DP:GQ:PL 1/1:1,116:117:99:5141,274,0 2 160086654 . A G 5127.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.111;CNN_1D=2.854;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=33.73;ReadPosRankSum=-1.392;SOR=0.403 GT:AD:DP:GQ:PL 1/1:1,116:117:99:5141,274,0 2 160086692 . A G 3452.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.487;CNN_1D=2.208;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.07;ReadPosRankSum=-0.606;SOR=0.297 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3466,329,0 2 160092703 . TA T 86.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;CNN_1D=-2.668;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.034;SOR=0.569 GT:AD:DP:GQ:PL 0/1:51,10:61:94:94,0,1047 2 160136337 . G A 4604.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.923;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.57;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4618,501,0 2 160182302 . C T 545.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;CNN_1D=-1.161;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=1.243;SOR=0.665 GT:AD:DP:GQ:PL 0/1:50,30:80:99:553,0,1068 2 160599717 . C G 803.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;CNN_1D=-0.434;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=0.540;SOR=0.769 GT:AD:DP:GQ:PL 0/1:49,40:89:99:811,0,1113 2 160604812 . C T 1163.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;CNN_1D=0.004;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=-1.358;SOR=0.690 GT:AD:DP:GQ:PL 0/1:46,48:94:99:1171,0,1110 2 160605268 . T C 3995.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.346;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.38;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4009,407,0 2 160639970 . T C 345.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;CNN_1D=-0.239;DP=51;ExcessHet=3.0103;FS=2.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-2.115;SOR=0.381 GT:AD:DP:GQ:PL 0/1:32,19:51:99:353,0,747 2 160673519 . G A 645.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;CNN_1D=1.868;DP=47;ExcessHet=3.0103;FS=4.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-0.873;SOR=1.508 GT:AD:DP:GQ:PL 0/1:23,24:47:99:653,0,524 2 160676427 . C A 718.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;CNN_1D=0.647;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.741;SOR=0.709 GT:AD:DP:GQ:PL 0/1:38,36:74:99:726,0,874 2 160710216 . A G 695.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;CNN_1D=0.532;DP=58;ExcessHet=3.0103;FS=3.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-1.303;SOR=0.487 GT:AD:DP:GQ:PL 0/1:27,31:58:99:703,0,649 2 160710922 . T C 741.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;CNN_1D=2.404;DP=56;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-0.795;SOR=0.549 GT:AD:DP:GQ:PL 0/1:24,32:56:99:749,0,543 2 160711045 . G C 551.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;CNN_1D=2.152;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.806;SOR=0.591 GT:AD:DP:GQ:PL 0/1:30,26:56:99:559,0,717 2 160808075 . C T 1298.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.774;CNN_1D=2.909;DP=42;ExcessHet=3.0103;FS=4.579;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.91;ReadPosRankSum=0.266;SOR=2.948 GT:AD:DP:GQ:PL 1/1:2,40:42:77:1312,77,0 2 160833188 . A G 1663.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.878;CNN_1D=3.422;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.40;ReadPosRankSum=1.098;SOR=0.793 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1677,140,0 2 160879259 . C T 1727.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;CNN_1D=-3.957;DP=151;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.756;SOR=0.544 GT:AD:DP:GQ:PL 0/1:73,78:151:99:1735,0,1528 2 160885418 . G C 1176.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.364;CNN_1D=-0.200;DP=95;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=0.763;SOR=0.544 GT:AD:DP:GQ:PL 0/1:41,54:95:99:1184,0,987 2 160885442 . T C 1233.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;CNN_1D=-0.391;DP=96;ExcessHet=3.0103;FS=5.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=0.210;SOR=0.576 GT:AD:DP:GQ:PL 0/1:43,53:96:99:1241,0,1043 2 160901517 . A G 3044.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.705;CNN_1D=2.840;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.84;ReadPosRankSum=-0.883;SOR=0.397 GT:AD:DP:GQ:PL 1/1:1,101:102:99:3058,269,0 2 160958349 . GAA G,GA 1264.10 PASS AC=1,1;AF=0.500,0.500;AN=2;CNN_1D=1.578;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=29.40;SOR=1.022 GT:AD:DP:GQ:PL 1/2:0,27,16:43:99:1281,400,341,693,0,577 2 160983060 . G C 1118.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;CNN_1D=-2.796;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=0.752;SOR=0.672 GT:AD:DP:GQ:PL 0/1:61,52:113:99:1126,0,1365 2 161029218 . G A 1129.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;CNN_1D=-4.694;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-1.315;SOR=0.724 GT:AD:DP:GQ:PL 0/1:85,57:142:99:1137,0,1923 2 161174740 . TAA T,TA 250.06 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.184;CNN_1D=-3.243;DP=34;ExcessHet=3.0103;FS=2.126;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.235;SOR=0.264 GT:AD:DP:GQ:PL 1/2:5,10,7:22:45:267,45,144,96,0,114 2 162280748 . G A 578.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;CNN_1D=0.516;DP=55;ExcessHet=3.0103;FS=3.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-0.868;SOR=1.312 GT:AD:DP:GQ:PL 0/1:29,25:54:99:586,0,654 2 162865068 . A G 1195.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;CNN_1D=-1.826;DP=115;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.748;SOR=0.573 GT:AD:DP:GQ:PL 0/1:58,56:114:99:1203,0,1267 2 162929979 . A G 1627.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;CNN_1D=-1.223;DP=116;ExcessHet=3.0103;FS=3.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=-0.676;SOR=0.643 GT:AD:DP:GQ:PL 0/1:45,70:115:99:1635,0,972 2 163128824 . T C 3136.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.005;CNN_1D=1.647;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.27;ReadPosRankSum=-2.023;SOR=0.822 GT:AD:DP:GQ:PL 1/1:2,113:115:99:3150,296,0 2 163208893 . T G 2618.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.906;CNN_1D=3.267;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.85;ReadPosRankSum=0.301;SOR=0.471 GT:AD:DP:GQ:PL 1/1:3,91:94:99:2632,222,0 2 165353712 . C T 2081.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.273;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.60;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2095,203,0 2 165476253 . A T 2531.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.898;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.93;SOR=0.780 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2545,281,0 2 165578581 . A G 955.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.131;CNN_1D=1.171;DP=60;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=0.469;SOR=0.394 GT:AD:DP:GQ:PL 0/1:19,41:60:99:963,0,477 2 165578602 . C T 498.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;CNN_1D=-1.582;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-2.396;SOR=0.637 GT:AD:DP:GQ:PL 0/1:51,27:78:99:506,0,1167 2 165987772 . T G 704.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;CNN_1D=0.533;DP=61;ExcessHet=3.0103;FS=5.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=0.361;SOR=1.473 GT:AD:DP:GQ:PL 0/1:31,30:61:99:712,0,643 2 165996107 . T A 1243.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;CNN_1D=-2.626;DP=114;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-1.875;SOR=0.964 GT:AD:DP:GQ:PL 0/1:56,57:113:99:1251,0,1262 2 166003479 . G A 1816.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;CNN_1D=-5.128;DP=166;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-0.281;SOR=0.760 GT:AD:DP:GQ:PL 0/1:85,81:166:99:1824,0,2011 2 166152389 . G A 2686.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.173;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.52;SOR=1.191 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2700,273,0 2 166170127 . T C 2029.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.955;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.18;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2043,216,0 2 166770120 . A G 797.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;CNN_1D=0.663;DP=73;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-0.397;SOR=0.386 GT:AD:DP:GQ:PL 0/1:36,37:73:99:805,0,838 2 166773971 . G A 619.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;CNN_1D=1.247;DP=53;ExcessHet=3.0103;FS=3.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=0.642;SOR=1.358 GT:AD:DP:GQ:PL 0/1:28,25:53:99:627,0,640 2 166788336 . T C 1882.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.702;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.52;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1896,198,0 2 166797646 . C T 1361.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;CNN_1D=-1.505;DP=118;ExcessHet=3.0103;FS=2.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-0.981;SOR=0.501 GT:AD:DP:GQ:PL 0/1:56,62:118:99:1369,0,1193 2 166892788 . C T 704.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;CNN_1D=-0.624;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=0.604;SOR=0.751 GT:AD:DP:GQ:PL 0/1:46,34:80:99:712,0,1118 2 166897864 . A G 577.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;CNN_1D=-3.560;DP=105;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=-1.522;SOR=0.801 GT:AD:DP:GQ:PL 0/1:73,32:105:99:585,0,1778 2 166897989 . G GA 356.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;CNN_1D=-0.646;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.037;SOR=0.941 GT:AD:DP:GQ:PL 0/1:10,22:32:99:364,0,102 2 166903445 . T C 1087.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;CNN_1D=0.038;DP=93;ExcessHet=3.0103;FS=5.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-0.200;SOR=0.802 GT:AD:DP:GQ:PL 0/1:43,50:93:99:1095,0,927 2 167060980 . GAAAC G 572.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.869;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.06;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,13:13:40:586,40,0 2 167099158 . A G 2705.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.092;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.32;SOR=1.145 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2719,296,0 2 167144974 . A T 756.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;CNN_1D=-0.050;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=1.516;SOR=0.703 GT:AD:DP:GQ:PL 0/1:45,34:79:99:764,0,1080 2 167144995 . T C 910.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;CNN_1D=-1.556;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-0.118;SOR=0.718 GT:AD:DP:GQ:PL 0/1:53,43:96:99:918,0,1213 2 167145142 . A G 508.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;CNN_1D=0.928;DP=51;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=-1.467;SOR=0.896 GT:AD:DP:GQ:PL 0/1:29,22:51:99:516,0,679 2 167163043 . T C 606.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;CNN_1D=1.318;DP=59;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=1.276;SOR=0.536 GT:AD:DP:GQ:PL 0/1:31,28:59:99:614,0,677 2 168099738 . T C 1414.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;CNN_1D=-0.648;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=-0.065;SOR=0.657 GT:AD:DP:GQ:PL 0/1:53,62:115:99:1422,0,1212 2 168099775 . C G 2557.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;CNN_1D=-1.101;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.96;ReadPosRankSum=-3.083;SOR=0.737 GT:AD:DP:GQ:PL 0/1:54,68:122:99:2565,0,2508 2 168099796 . T C 2602.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.468;CNN_1D=-0.956;DP=131;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.02;ReadPosRankSum=-1.930;SOR=0.628 GT:AD:DP:GQ:PL 0/1:61,69:130:99:2610,0,2669 2 168103304 . G A 1744.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.397;CNN_1D=-2.001;DP=132;ExcessHet=3.0103;FS=3.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=1.436;SOR=0.831 GT:AD:DP:GQ:PL 0/1:61,71:132:99:1752,0,1323 2 168103863 . G A 1641.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;CNN_1D=-2.954;DP=138;ExcessHet=3.0103;FS=6.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=0.111;SOR=0.420 GT:AD:DP:GQ:PL 0/1:67,71:138:99:1649,0,1581 2 168103925 . A G 1460.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;CNN_1D=-0.751;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-1.057;SOR=0.732 GT:AD:DP:GQ:PL 0/1:50,56:106:99:1468,0,1277 2 168104199 . C T 1371.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.025;CNN_1D=-2.719;DP=118;ExcessHet=3.0103;FS=15.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-0.910;SOR=0.889 GT:AD:DP:GQ:PL 0/1:57,61:118:99:1379,0,1617 2 168104370 . A C 1092.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.717;CNN_1D=-1.074;DP=104;ExcessHet=3.0103;FS=3.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=3.744;SOR=1.135 GT:AD:DP:GQ:PL 0/1:61,43:104:99:1100,0,1438 2 168104627 . G A 1483.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;CNN_1D=-3.230;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-1.440;SOR=0.741 GT:AD:DP:GQ:PL 0/1:72,65:137:99:1491,0,1601 2 168104669 . A G 1601.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;CNN_1D=-2.674;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=2.316;SOR=0.732 GT:AD:DP:GQ:PL 0/1:78,62:140:99:1609,0,1909 2 168104988 . G T 2582.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;CNN_1D=-5.974;DP=185;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=-1.021;SOR=0.623 GT:AD:DP:GQ:PL 0/1:81,104:185:99:2590,0,1995 2 168106085 . G A 1690.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;CNN_1D=-0.045;DP=108;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=-0.003;SOR=0.606 GT:AD:DP:GQ:PL 0/1:42,66:108:99:1698,0,948 2 168106246 . G A 1648.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.231;CNN_1D=-4.496;DP=150;ExcessHet=3.0103;FS=18.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.130;SOR=0.918 GT:AD:DP:GQ:PL 0/1:73,74:147:99:1656,0,1870 2 168107155 . G A 1064.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.565;CNN_1D=-1.180;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-0.485;SOR=0.640 GT:AD:DP:GQ:PL 0/1:53,45:98:99:1072,0,1437 2 168107491 . A G 1942.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;CNN_1D=-5.904;DP=182;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=0.634;SOR=0.898 GT:AD:DP:GQ:PL 0/1:96,86:182:99:1950,0,2222 2 168108357 . A G 1888.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.444;CNN_1D=-4.904;DP=169;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-1.530;SOR=0.775 GT:AD:DP:GQ:PL 0/1:91,78:169:99:1896,0,2038 2 168115710 . T G 1808.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;CNN_1D=-1.875;DP=142;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=1.877;SOR=0.927 GT:AD:DP:GQ:PL 0/1:68,74:142:99:1816,0,1521 2 168115769 . G C 1576.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;CNN_1D=-2.290;DP=124;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-2.528;SOR=0.569 GT:AD:DP:GQ:PL 0/1:60,64:124:99:1584,0,1391 2 168115797 . G C 1445.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;CNN_1D=-1.381;DP=115;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-2.632;SOR=0.519 GT:AD:DP:GQ:PL 0/1:54,61:115:99:1453,0,1299 2 169103796 . C CGCCGGG 171.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;CNN_1D=-0.144;DP=20;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-0.062;SOR=0.828 GT:AD:DP:GQ:PL 0/1:10,5:15:99:179,0,709 2 169690729 . T C 2400.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.081;CNN_1D=1.496;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.92;ReadPosRankSum=-0.490;SOR=1.497 GT:AD:DP:GQ:PL 1/1:2,81:83:99:2414,200,0 2 169707428 . C T 1645.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.026;CNN_1D=-6.473;DP=190;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-0.672;SOR=0.613 GT:AD:DP:GQ:PL 0/1:106,84:190:99:1653,0,2540 2 169721377 . G A 4132.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.186;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.22;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,114:114:99:4146,348,0 2 169721381 . A G 1432.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;CNN_1D=-2.119;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=0.127;SOR=0.717 GT:AD:DP:GQ:PL 0/1:59,62:121:99:1440,0,1268 2 169728069 . GAAA G 846.05 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.649;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=24.17;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1430,104,0 2 169764176 . G C 3282.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;CNN_1D=-10.467;DP=280;ExcessHet=3.0103;FS=9.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=0.816;SOR=0.769 GT:AD:DP:GQ:PL 0/1:140,140:280:99:3290,0,3373 2 169789016 . T C 1372.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;CNN_1D=-3.011;DP=137;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-0.105;SOR=0.757 GT:AD:DP:GQ:PL 0/1:70,66:136:99:1380,0,1492 2 169830328 . A G 715.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;CNN_1D=0.621;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=1.449;SOR=0.703 GT:AD:DP:GQ:PL 0/1:35,33:68:99:723,0,754 2 169997051 . G A 2651.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.611;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.33;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2665,290,0 2 170003432 . T G 3550.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.251;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.95;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3564,381,0 2 170010985 . T C 2111.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.258;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.15;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2125,225,0 2 170025083 . A G 1317.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;CNN_1D=-2.298;DP=124;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.143;SOR=0.585 GT:AD:DP:GQ:PL 0/1:64,60:124:99:1325,0,1576 2 170032989 . C T 1401.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;CNN_1D=-2.523;DP=119;ExcessHet=3.0103;FS=2.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-0.411;SOR=0.923 GT:AD:DP:GQ:PL 0/1:55,64:119:99:1409,0,1180 2 170063471 . A G 2258.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;CNN_1D=-8.874;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-0.282;SOR=0.713 GT:AD:DP:GQ:PL 0/1:121,97:218:99:2266,0,2844 2 170129528 . G A 4024.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.297;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.56;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4038,437,0 2 170150671 . G A 1446.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;CNN_1D=-1.929;DP=123;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=1.089;SOR=0.571 GT:AD:DP:GQ:PL 0/1:54,69:123:99:1454,0,1088 2 170151227 . TAA T 229.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;CNN_1D=-3.298;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=0.489;SOR=0.368 GT:AD:DP:GQ:PL 0/1:9,10:19:99:237,0,200 2 170218847 . C G 1960.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.283;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.25;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1974,201,0 2 170403030 . T C 2768.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;CNN_1D=2.610;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.62;ReadPosRankSum=0.668;SOR=0.818 GT:AD:DP:GQ:PL 1/1:4,100:104:99:2782,213,0 2 170411693 . T C 1728.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.258;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.33;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1742,183,0 2 170413815 . CA C 43.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;CNN_1D=-0.421;DP=24;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=1.563;SOR=1.270 GT:AD:DP:GQ:PL 0/1:16,4:20:51:51,0,367 2 170605981 . C T 3676.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.019;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.95;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3690,381,0 2 170684224 . C T 898.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.211;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.26;SOR=1.302 GT:AD:DP:GQ:PL 1/1:0,27:27:81:912,81,0 2 171070912 . T C 1754.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.707;CNN_1D=3.851;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.58;ReadPosRankSum=-1.472;SOR=0.291 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1768,159,0 2 171073887 . G A 3221.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.609;CNN_1D=1.157;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.98;ReadPosRankSum=-1.954;SOR=0.795 GT:AD:DP:GQ:PL 1/1:2,122:124:99:3235,321,0 2 171225841 . A G 1286.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;CNN_1D=-0.724;DP=110;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=1.901;SOR=0.627 GT:AD:DP:GQ:PL 0/1:50,60:110:99:1294,0,1121 2 171260787 . G A 2029.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.562;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.18;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2043,216,0 2 171260820 . T C 2706.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.711;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.61;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2720,293,0 2 171355198 . A G 2139.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.209;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.52;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2153,225,0 2 171356274 . G A 2322.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.097;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.39;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2336,263,0 2 171572940 . G A 4803.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.064;CNN_1D=0.977;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.93;ReadPosRankSum=1.843;SOR=0.718 GT:AD:DP:GQ:PL 1/1:2,164:166:99:4817,448,0 2 171649402 . C T 1898.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;CNN_1D=3.643;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.73;ReadPosRankSum=0.435;SOR=0.722 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1912,164,0 2 171822466 . C T 5016.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.023;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.66;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5030,521,0 2 172180771 . A G 3529.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.016;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.58;QD=28.23;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3543,375,0 2 172398311 . T C 1132.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.737;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.03;SOR=1.236 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1146,116,0 2 172411273 . G A 3872.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.361;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.90;SOR=1.284 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3886,399,0 2 172693780 . G A 3183.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.275;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.17;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3197,339,0 2 172725301 . A G 2050.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.696;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.97;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2064,228,0 2 172966250 . T C 1193.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;CNN_1D=-2.221;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-1.711;SOR=0.733 GT:AD:DP:GQ:PL 0/1:58,49:107:99:1201,0,1439 2 173337495 . C T 544.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;CNN_1D=-0.680;DP=76;ExcessHet=3.0103;FS=4.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=0.337;SOR=1.029 GT:AD:DP:GQ:PL 0/1:49,27:76:99:552,0,1051 2 173339808 . G A 599.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;CNN_1D=0.620;DP=66;ExcessHet=3.0103;FS=4.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=1.761;SOR=1.306 GT:AD:DP:GQ:PL 0/1:39,27:66:99:607,0,876 2 173344474 . A G 2138.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.723;CNN_1D=3.338;DP=79;ExcessHet=3.0103;FS=3.294;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.06;ReadPosRankSum=0.702;SOR=0.470 GT:AD:DP:GQ:PL 1/1:1,78:79:99:2152,199,0 2 173352103 . C T 2191.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;CNN_1D=-4.832;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-1.549;SOR=0.735 GT:AD:DP:GQ:PL 0/1:82,96:178:99:2199,0,1775 2 173352157 . A T 1444.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;CNN_1D=-2.738;DP=125;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.536;SOR=0.873 GT:AD:DP:GQ:PL 0/1:64,61:125:99:1452,0,1528 2 173600783 . C CG 2335.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.831;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.63;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2349,190,0 2 174055646 . T C 255.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;CNN_1D=0.431;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=0.238;SOR=0.702 GT:AD:DP:GQ:PL 0/1:30,13:43:99:263,0,721 2 174097106 . A G 1287.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;CNN_1D=-1.575;DP=115;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.088;SOR=0.467 GT:AD:DP:GQ:PL 0/1:59,55:114:99:1295,0,1392 2 174103160 . T C 1056.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;CNN_1D=-0.759;DP=95;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-0.223;SOR=0.571 GT:AD:DP:GQ:PL 0/1:47,48:95:99:1064,0,1023 2 174128513 . C T 1237.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;CNN_1D=-0.133;DP=92;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=1.134;SOR=0.922 GT:AD:DP:GQ:PL 0/1:39,53:92:99:1245,0,790 2 175200903 . G C 1136.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;CNN_1D=-3.446;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-0.203;SOR=0.725 GT:AD:DP:GQ:PL 0/1:78,50:128:99:1144,0,1828 2 175201299 . C G 1320.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.173;CNN_1D=-3.466;DP=133;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=1.672;SOR=0.954 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1328,0,1790 2 175202199 . A G 1886.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;CNN_1D=-6.451;DP=184;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-0.117;SOR=0.901 GT:AD:DP:GQ:PL 0/1:84,83:167:99:1894,0,1892 2 175333632 . G A 783.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;CNN_1D=1.027;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=0.907;SOR=0.715 GT:AD:DP:GQ:PL 0/1:33,36:69:99:791,0,674 2 175436940 . G A 4893.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.048;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.30;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4907,501,0 2 175689249 . GA G 37.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;CNN_1D=-1.152;DP=47;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-1.206;SOR=0.336 GT:AD:DP:GQ:PL 0/1:37,6:43:45:45,0,807 2 175945502 . GA G 930.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;CNN_1D=1.147;DP=65;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-0.667;SOR=0.354 GT:AD:DP:GQ:PL 0/1:28,32:60:99:938,0,812 2 176958075 . T A 1456.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;CNN_1D=-2.574;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.819;SOR=0.698 GT:AD:DP:GQ:PL 0/1:61,59:120:99:1464,0,1480 2 176988290 . C CGCA 947.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;CNN_1D=1.849;DP=43;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=0.723;SOR=0.511 GT:AD:DP:GQ:PL 0/1:15,24:39:99:955,0,583 2 176995145 . TGCG T 199.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;CNN_1D=-3.142;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.141;SOR=0.650 GT:AD:DP:GQ:PL 0/1:43,8:51:99:207,0,1869 2 177016728 . T C 1533.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;CNN_1D=-3.404;DP=138;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=0.937;SOR=0.761 GT:AD:DP:GQ:PL 0/1:68,70:138:99:1541,0,1487 2 177034121 . G T 1911.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;CNN_1D=-1.760;DP=133;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=0.572;SOR=0.527 GT:AD:DP:GQ:PL 0/1:56,77:133:99:1919,0,1212 2 177036754 . T C 3855.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.766;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.82;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3869,343,0 2 177054769 . G A 2594.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;CNN_1D=-6.570;DP=204;ExcessHet=3.0103;FS=4.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-1.384;SOR=1.015 GT:AD:DP:GQ:PL 0/1:92,112:204:99:2602,0,2116 2 178417142 . C T 2000.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;CNN_1D=-5.055;DP=155;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.918;QD=12.91;ReadPosRankSum=-1.068;SOR=0.752 GT:AD:DP:GQ:PL 0/1:72,83:155:99:2008,0,1643 2 178417225 . C T 1846.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;CNN_1D=-3.748;DP=153;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.944;QD=12.07;ReadPosRankSum=0.852;SOR=0.629 GT:AD:DP:GQ:PL 0/1:75,78:153:99:1854,0,1843 2 178481818 . G T 1234.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;CNN_1D=-4.984;DP=94;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=-3.813;QD=13.28;ReadPosRankSum=0.345;SOR=0.906 GT:AD:DP:GQ:PL 0/1:40,53:93:99:1242,0,962 2 178482094 . C T 644.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;CNN_1D=-11.002;DP=113;ExcessHet=3.0103;FS=16.139;MLEAC=1;MLEAF=0.500;MQ=45.36;MQRankSum=-5.374;QD=5.76;ReadPosRankSum=0.908;SOR=2.262 GT:AD:DP:GQ:PL 0/1:85,27:112:99:652,0,2068 2 178494173 . G GGGA 2988.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;CNN_1D=-4.198;DP=157;ExcessHet=3.0103;FS=4.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.28;ReadPosRankSum=-0.949;SOR=0.625 GT:AD:DP:GQ:PL 0/1:79,76:155:99:2996,0,3482 2 178682603 . T C 456.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;CNN_1D=0.212;DP=50;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-1.907;SOR=1.085 GT:AD:DP:GQ:PL 0/1:28,22:50:99:464,0,653 2 178682655 . A G 379.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;CNN_1D=1.830;DP=48;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=2.722;SOR=0.549 GT:AD:DP:GQ:PL 0/1:29,19:48:99:387,0,681 2 178936373 . T G 2019.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.020;CNN_1D=3.650;DP=69;ExcessHet=3.0103;FS=3.475;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.26;ReadPosRankSum=0.904;SOR=0.606 GT:AD:DP:GQ:PL 1/1:1,68:69:99:2033,197,0 2 178936614 . C T 4423.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.435;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.68;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4437,447,0 2 178988998 . G A 619.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;CNN_1D=2.328;DP=55;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=1.948;SOR=0.465 GT:AD:DP:GQ:PL 0/1:26,29:55:99:627,0,582 2 179188959 . G A 1427.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;CNN_1D=-2.698;DP=136;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.863;SOR=0.593 GT:AD:DP:GQ:PL 0/1:70,66:136:99:1435,0,1447 2 179201048 . G T 657.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;CNN_1D=0.194;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.370;SOR=0.717 GT:AD:DP:GQ:PL 0/1:45,31:76:99:665,0,1042 2 179203797 . G A 2533.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.315;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.16;SOR=1.347 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2547,252,0 2 179395958 . T C 1394.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;CNN_1D=-3.357;DP=146;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=0.366;SOR=0.490 GT:AD:DP:GQ:PL 0/1:83,63:146:99:1402,0,2056 2 179400585 . GAA G 76.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;CNN_1D=-1.602;DP=46;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.339;SOR=1.329 GT:AD:DP:GQ:PL 0/1:33,6:39:84:84,0,968 2 179403750 . C T 992.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;CNN_1D=-3.202;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.835;SOR=0.636 GT:AD:DP:GQ:PL 0/1:76,46:122:99:1000,0,1886 2 179404361 . G A 2410.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;CNN_1D=-5.108;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=0.533;SOR=0.686 GT:AD:DP:GQ:PL 0/1:76,103:179:99:2418,0,1686 2 179406003 . C A 873.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;CNN_1D=-1.265;DP=91;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.028;SOR=0.470 GT:AD:DP:GQ:PL 0/1:49,42:91:99:881,0,1179 2 179408713 . A G 1747.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;CNN_1D=-1.716;DP=127;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=1.942;SOR=0.904 GT:AD:DP:GQ:PL 0/1:60,67:127:99:1755,0,1365 2 179410568 . T C 1314.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;CNN_1D=-0.195;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=0.589;SOR=0.767 GT:AD:DP:GQ:PL 0/1:44,54:98:99:1322,0,999 2 179414318 . C T 934.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;CNN_1D=-1.647;DP=111;ExcessHet=3.0103;FS=2.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.538;SOR=0.552 GT:AD:DP:GQ:PL 0/1:70,41:111:99:942,0,1705 2 179416556 . A C 1813.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;CNN_1D=-6.224;DP=176;ExcessHet=3.0103;FS=4.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-1.118;SOR=0.582 GT:AD:DP:GQ:PL 0/1:95,81:176:99:1821,0,2412 2 179421609 . C T 1312.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;CNN_1D=-1.644;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=0.149;SOR=0.643 GT:AD:DP:GQ:PL 0/1:59,57:116:99:1320,0,1461 2 179421694 . A G 1823.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;CNN_1D=-5.485;DP=179;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-1.286;SOR=0.624 GT:AD:DP:GQ:PL 0/1:98,81:179:99:1831,0,2368 2 179427186 . A G 1696.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.994;CNN_1D=-1.376;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.657;SOR=0.768 GT:AD:DP:GQ:PL 0/1:47,71:118:99:1704,0,1179 2 179427536 . T C 1366.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;CNN_1D=-1.904;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=1.006;SOR=0.724 GT:AD:DP:GQ:PL 0/1:57,60:117:99:1374,0,1431 2 179435337 . T G 1607.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;CNN_1D=-1.742;DP=123;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=1.997;SOR=0.784 GT:AD:DP:GQ:PL 0/1:55,68:123:99:1615,0,1283 2 179438866 . C T 2401.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;CNN_1D=-2.556;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.01;ReadPosRankSum=0.564;SOR=0.754 GT:AD:DP:GQ:PL 0/1:56,94:150:99:2409,0,1246 2 179443540 . A G 1051.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;CNN_1D=1.006;DP=81;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=-0.501;SOR=0.853 GT:AD:DP:GQ:PL 0/1:39,42:81:99:1059,0,1029 2 179444768 . C G 3737.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.541;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.97;SOR=0.840 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3751,386,0 2 179444939 . C T 902.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;CNN_1D=2.325;DP=59;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=-0.862;SOR=0.984 GT:AD:DP:GQ:PL 0/1:22,37:59:99:910,0,543 2 179447848 . T C 1544.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;CNN_1D=-3.875;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=-0.853;SOR=0.689 GT:AD:DP:GQ:PL 0/1:71,73:144:99:1552,0,1626 2 179451420 . G A 861.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;CNN_1D=-1.138;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-1.960;SOR=0.760 GT:AD:DP:GQ:PL 0/1:48,37:85:99:869,0,1147 2 179454394 . A G 1950.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;CNN_1D=-5.515;DP=180;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=0.392;SOR=0.548 GT:AD:DP:GQ:PL 0/1:100,80:180:99:1958,0,2480 2 179455207 . T C 1235.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;CNN_1D=-2.111;DP=102;ExcessHet=3.0103;FS=6.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=-1.711;SOR=1.379 GT:AD:DP:GQ:PL 0/1:51,51:102:99:1243,0,1291 2 179464527 . T C 1166.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;CNN_1D=-3.909;DP=134;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-2.268;SOR=0.876 GT:AD:DP:GQ:PL 0/1:78,56:134:99:1174,0,1863 2 179474668 . G A 1411.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873;CNN_1D=-4.410;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=0.282;SOR=0.643 GT:AD:DP:GQ:PL 0/1:77,66:143:99:1419,0,1864 2 179477717 . A G 1736.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;CNN_1D=-4.073;DP=160;ExcessHet=3.0103;FS=5.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=0.923;SOR=1.130 GT:AD:DP:GQ:PL 0/1:84,76:160:99:1744,0,1958 2 179479245 . C T 962.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;CNN_1D=-0.872;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=0.971;SOR=0.715 GT:AD:DP:GQ:PL 0/1:52,39:91:99:970,0,1186 2 179498042 . T C 1134.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;CNN_1D=0.567;DP=79;ExcessHet=3.0103;FS=4.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=0.234;SOR=0.673 GT:AD:DP:GQ:PL 0/1:33,46:79:99:1142,0,693 2 179514941 . TTTTCCTCTTCAGGAGCAA T 473.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;CNN_1D=-0.991;DP=66;ExcessHet=3.0103;FS=4.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=0.554;SOR=1.303 GT:AD:DP:GQ:PL 0/1:37,14:51:99:481,0,2457 2 179527475 . C T 317.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;CNN_1D=-2.527;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=27.15;MQRankSum=0.853;QD=17.64;ReadPosRankSum=-0.141;SOR=1.493 GT:AD:DP:GQ:PL 0/1:6,12:18:99:325,0,130 2 179528378 . C T 1025.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;CNN_1D=-0.373;DP=83;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=0.733;SOR=0.850 GT:AD:DP:GQ:PL 0/1:42,41:83:99:1033,0,1047 2 179554305 . C T 429.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;CNN_1D=-0.817;DP=64;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=1.148;SOR=0.563 GT:AD:DP:GQ:PL 0/1:41,22:63:99:437,0,1021 2 179558366 . T C 511.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;CNN_1D=0.111;DP=65;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.087;SOR=0.806 GT:AD:DP:GQ:PL 0/1:39,26:65:99:519,0,888 2 179563643 . TA T 87.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;CNN_1D=-1.889;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.868;SOR=0.941 GT:AD:DP:GQ:PL 0/1:22,7:29:95:95,0,429 2 179583317 . G A 2499.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.987;CNN_1D=3.197;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.40;ReadPosRankSum=0.943;SOR=0.872 GT:AD:DP:GQ:PL 1/1:2,83:85:99:2513,175,0 2 179585266 . C T 3063.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.566;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.10;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3077,325,0 2 179588272 . G T 2321.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;CNN_1D=-7.532;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=1.922;SOR=0.678 GT:AD:DP:GQ:PL 0/1:109,106:215:99:2329,0,2477 2 179596554 . T C 1811.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;CNN_1D=-4.633;DP=163;ExcessHet=3.0103;FS=3.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-2.147;SOR=0.466 GT:AD:DP:GQ:PL 0/1:83,80:163:99:1819,0,1886 2 179600563 . G A 3961.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.139;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.95;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3975,384,0 2 179614952 . A G 4345.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.160;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.17;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4359,432,0 2 179615887 . T C 2166.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.268;CNN_1D=3.916;DP=72;ExcessHet=3.0103;FS=3.259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.08;ReadPosRankSum=1.035;SOR=0.448 GT:AD:DP:GQ:PL 1/1:1,71:72:99:2180,179,0 2 179615931 . C G 2168.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.604;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.97;SOR=0.750 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2182,210,0 2 179615994 . T C 2024.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.057;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.33;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2038,207,0 2 179616770 . GAA G,GA 1024.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.606;CNN_1D=-0.311;DP=65;ExcessHet=3.0103;FS=5.647;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.62;ReadPosRankSum=0.213;SOR=1.437 GT:AD:DP:GQ:PL 1/2:9,24,22:55:99:1041,309,543,364,0,432 2 179620951 . C T 2305.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.812;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.58;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2319,219,0 2 179621477 . C T 2724.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.123;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.93;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2738,273,0 2 179623758 . C T 3229.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.750;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.83;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3243,336,0 2 179629363 . T C 5093.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.305;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.45;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5107,537,0 2 179629461 . C T 4241.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.745;CNN_1D=0.529;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.27;ReadPosRankSum=1.710;SOR=0.317 GT:AD:DP:GQ:PL 1/1:1,149:150:99:4255,415,0 2 179638238 . G A 3313.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.476;CNN_1D=1.734;DP=124;ExcessHet=3.0103;FS=2.227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.72;ReadPosRankSum=0.927;SOR=0.580 GT:AD:DP:GQ:PL 1/1:3,121:124:99:3327,283,0 2 179642425 . G A 2502.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.211;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.28;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2516,240,0 2 179644035 . G A 3122.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.664;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.31;SOR=1.125 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3136,309,0 2 179644855 . T C 2889.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.677;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2903,294,0 2 179753245 . C T 1888.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.841;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.61;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1902,198,0 2 179914640 . G A 1363.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;CNN_1D=-3.043;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=1.230;SOR=0.731 GT:AD:DP:GQ:PL 0/1:67,64:131:99:1371,0,1545 2 179979930 . T C 767.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;CNN_1D=-2.976;DP=117;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=0.759;SOR=0.686 GT:AD:DP:GQ:PL 0/1:77,40:117:99:775,0,1767 2 180047908 . T C 1526.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.326;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.35;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1540,156,0 2 180810180 . C T 1824.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;CNN_1D=-3.136;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=-1.289;SOR=0.666 GT:AD:DP:GQ:PL 0/1:55,75:130:99:1832,0,1224 2 180810264 . A T 2158.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;CNN_1D=-3.096;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=2.104;SOR=0.656 GT:AD:DP:GQ:PL 0/1:67,91:158:99:2166,0,1588 2 180835589 . A G 2374.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.701;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.52;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2388,218,0 2 180835792 . T A 781.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;CNN_1D=2.620;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.37;ReadPosRankSum=-1.178;SOR=0.892 GT:AD:DP:GQ:PL 0/1:14,31:45:99:789,0,257 2 182374534 . A G 580.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;CNN_1D=1.460;DP=48;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=1.809;SOR=0.504 GT:AD:DP:GQ:PL 0/1:20,27:47:99:588,0,664 2 182395345 . G A 1086.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;CNN_1D=0.081;DP=89;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-0.025;SOR=0.909 GT:AD:DP:GQ:PL 0/1:40,49:89:99:1094,0,861 2 182399097 . T C 1219.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;CNN_1D=1.179;DP=84;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=0.321;SOR=0.600 GT:AD:DP:GQ:PL 0/1:33,51:84:99:1227,0,739 2 182399638 . A G 1785.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.876;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.46;SOR=1.000 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1799,195,0 2 182403851 . G A 2839.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.773;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.83;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2853,305,0 2 182521578 . G A 3428.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.662;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.57;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3442,359,0 2 182543455 . T C 4088.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.433;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.99;SOR=0.960 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4102,423,0 2 183033020 . G GA 55.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;CNN_1D=-1.883;DP=46;ExcessHet=3.0103;FS=3.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.220;SOR=1.426 GT:AD:DP:GQ:PL 0/1:34,7:41:63:63,0,730 2 183088584 . G A 1060.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.759;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.50;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1074,120,0 2 183799558 . G C 1736.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.830;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.76;SOR=1.524 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1750,159,0 2 185800905 . A T 3787.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.090;CNN_1D=0.626;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.47;ReadPosRankSum=-0.980;SOR=0.908 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3801,350,0 2 185801747 . G A 2183.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.996;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.40;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,49:49:99:2197,147,0 2 185801755 . A G 2171.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.789;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.20;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,49:49:99:2185,147,0 2 185801917 . A G 985.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;CNN_1D=0.284;DP=76;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=0.668;SOR=0.431 GT:AD:DP:GQ:PL 0/1:36,39:75:99:993,0,944 2 185802211 . C CACA 1966.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.078;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.20;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1980,132,0 2 185802243 . C A 1298.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.973;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.45;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1312,120,0 2 185802363 . A G 1943.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.388;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.36;SOR=1.306 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1957,192,0 2 186603605 . A AG 795.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;CNN_1D=-1.228;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-0.825;SOR=0.657 GT:AD:DP:GQ:PL 0/1:37,32:69:99:803,0,971 2 186625770 . A G 308.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;CNN_1D=1.198;DP=28;ExcessHet=3.0103;FS=5.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=1.291;SOR=1.567 GT:AD:DP:GQ:PL 0/1:15,13:28:99:316,0,358 2 186627943 . T C 896.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;CNN_1D=-0.526;DP=82;ExcessHet=3.0103;FS=7.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-1.793;SOR=0.725 GT:AD:DP:GQ:PL 0/1:39,43:82:99:904,0,872 2 186654592 . A G 764.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;CNN_1D=1.003;DP=74;ExcessHet=3.0103;FS=3.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=1.141;SOR=0.392 GT:AD:DP:GQ:PL 0/1:42,32:74:99:772,0,1063 2 186655726 . G A 1681.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.336;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.13;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1695,162,0 2 186656657 . C T 508.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.556;CNN_1D=-0.939;DP=68;ExcessHet=3.0103;FS=9.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-0.808;SOR=1.563 GT:AD:DP:GQ:PL 0/1:45,22:67:99:516,0,1072 2 186656956 . T C 1153.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;CNN_1D=-1.480;DP=99;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.063;SOR=0.910 GT:AD:DP:GQ:PL 0/1:47,52:99:99:1161,0,1139 2 186657089 . C A 1390.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.113;CNN_1D=1.333;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=0.459;SOR=0.666 GT:AD:DP:GQ:PL 0/1:31,59:90:99:1398,0,730 2 186658056 . G A 817.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;CNN_1D=0.765;DP=66;ExcessHet=3.0103;FS=2.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-1.123;SOR=0.968 GT:AD:DP:GQ:PL 0/1:34,32:66:99:825,0,726 2 186658438 . C T 754.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;CNN_1D=0.164;DP=75;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-0.043;SOR=0.909 GT:AD:DP:GQ:PL 0/1:42,33:75:99:762,0,963 2 186658565 . G T 588.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.437;CNN_1D=2.576;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-0.165;SOR=0.716 GT:AD:DP:GQ:PL 0/1:26,24:50:99:596,0,789 2 186659359 . G T 647.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.774;CNN_1D=2.928;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.04;ReadPosRankSum=-1.446;SOR=0.846 GT:AD:DP:GQ:PL 0/1:12,26:38:99:655,0,304 2 186661673 . A G 1742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;CNN_1D=-4.481;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=1.230;SOR=0.725 GT:AD:DP:GQ:PL 0/1:84,75:159:99:1750,0,1925 2 186664473 . T C 394.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;CNN_1D=0.345;DP=49;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-0.218;SOR=1.022 GT:AD:DP:GQ:PL 0/1:31,18:49:99:402,0,756 2 186664963 . C A 1025.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;CNN_1D=0.381;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=0.981;SOR=0.695 GT:AD:DP:GQ:PL 0/1:41,43:84:99:1033,0,958 2 186665432 . G A 1110.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;CNN_1D=1.188;DP=81;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.71;ReadPosRankSum=0.412;SOR=0.468 GT:AD:DP:GQ:PL 0/1:38,43:81:99:1118,0,998 2 186665824 . A G 1905.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;CNN_1D=-1.747;DP=125;ExcessHet=3.0103;FS=2.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=0.010;SOR=0.651 GT:AD:DP:GQ:PL 0/1:52,73:125:99:1913,0,1197 2 186667121 . T C 1409.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;CNN_1D=0.734;DP=88;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=0.348;SOR=0.864 GT:AD:DP:GQ:PL 0/1:36,52:88:99:1417,0,857 2 186668935 . A G 769.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;CNN_1D=-0.006;DP=75;ExcessHet=3.0103;FS=9.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=1.211;SOR=1.182 GT:AD:DP:GQ:PL 0/1:40,35:75:99:777,0,967 2 186670104 . A C 2259.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.205;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.53;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2273,222,0 2 186670780 . T A 689.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;CNN_1D=2.192;DP=48;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=0.269;SOR=0.717 GT:AD:DP:GQ:PL 0/1:22,26:48:99:697,0,503 2 186670979 . T C 2465.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.776;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.00;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2479,255,0 2 186671357 . G A 1168.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;CNN_1D=0.044;DP=87;ExcessHet=3.0103;FS=4.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=-0.387;SOR=0.977 GT:AD:DP:GQ:PL 0/1:42,45:87:99:1176,0,963 2 186671912 . G A 1057.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;CNN_1D=1.111;DP=85;ExcessHet=3.0103;FS=1.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=1.689;SOR=0.808 GT:AD:DP:GQ:PL 0/1:40,44:84:99:1065,0,995 2 186672897 . A G 913.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.108;CNN_1D=0.195;DP=76;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-1.144;SOR=0.968 GT:AD:DP:GQ:PL 0/1:42,34:76:99:921,0,1120 2 186678633 . C T 1804.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;CNN_1D=-5.993;DP=168;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-1.656;SOR=0.747 GT:AD:DP:GQ:PL 0/1:89,79:168:99:1812,0,2017 2 186697876 . A G 3485.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.549;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.79;SOR=0.710 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3499,350,0 2 187487160 . G A 647.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;CNN_1D=1.906;DP=58;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=1.856;SOR=0.430 GT:AD:DP:GQ:PL 0/1:27,31:58:99:655,0,631 2 187498107 . T C 325.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;CNN_1D=1.061;DP=52;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.361;SOR=0.520 GT:AD:DP:GQ:PL 0/1:32,19:51:99:333,0,747 2 187532417 . G A 1192.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.621;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.91;SOR=0.780 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1206,138,0 2 187558960 . G A 1004.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.226;CNN_1D=1.710;DP=68;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=-1.092;SOR=0.567 GT:AD:DP:GQ:PL 0/1:24,44:68:99:1012,0,640 2 187559029 . A ACAG 800.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;CNN_1D=0.195;DP=62;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=0.355;SOR=0.951 GT:AD:DP:GQ:PL 0/1:25,31:56:99:808,0,590 2 187559047 . G GCAA 509.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;CNN_1D=-1.761;DP=75;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=0.475;SOR=0.428 GT:AD:DP:GQ:PL 0/1:43,26:69:99:517,0,1151 2 187626338 . C T 1079.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;CNN_1D=-0.646;DP=95;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-0.283;SOR=0.832 GT:AD:DP:GQ:PL 0/1:48,47:95:99:1087,0,1191 2 188250301 . T A 1790.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.149;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.32;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1804,204,0 2 188343497 . T C 707.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;CNN_1D=1.140;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-0.368;SOR=0.638 GT:AD:DP:GQ:PL 0/1:33,32:65:99:715,0,799 2 189862097 . G A 1223.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.650;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.80;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1237,132,0 2 189864582 . T C 2987.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.845;CNN_1D=2.198;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.66;ReadPosRankSum=-1.037;SOR=0.693 GT:AD:DP:GQ:PL 1/1:2,106:108:99:3001,274,0 2 189875421 . T G 3305.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.415;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.60;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3319,324,0 2 189904203 . A G 1276.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;CNN_1D=-3.688;DP=133;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.467;SOR=0.765 GT:AD:DP:GQ:PL 0/1:69,63:132:99:1284,0,1402 2 189904233 . T G 1133.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;CNN_1D=-2.282;DP=116;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.053;SOR=0.840 GT:AD:DP:GQ:PL 0/1:61,54:115:99:1141,0,1300 2 189907937 . A G 1921.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.296;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.06;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1935,212,0 2 189932831 . T C 3790.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.126;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.50;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3804,399,0 2 189953508 . C T 841.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;CNN_1D=-1.073;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-1.052;SOR=0.655 GT:AD:DP:GQ:PL 0/1:49,40:89:99:849,0,1096 2 189974958 . G T 2161.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.580;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.87;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2175,210,0 2 190323530 . A G 694.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;CNN_1D=0.944;DP=66;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=0.789;SOR=0.582 GT:AD:DP:GQ:PL 0/1:32,34:66:99:702,0,701 2 190430177 . A G 4300.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.049;CNN_1D=-0.554;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.88;ReadPosRankSum=0.995;SOR=0.772 GT:AD:DP:GQ:PL 1/1:4,156:160:99:4314,384,0 2 190531426 . G A 2858.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.398;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.73;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2872,279,0 2 190532183 . G A 1160.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;CNN_1D=-1.852;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=2.077;SOR=0.724 GT:AD:DP:GQ:PL 0/1:67,49:116:99:1168,0,1622 2 190595258 . G T 1647.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.286;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.00;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1661,183,0 2 190602513 . T C 1892.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.001;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.42;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1906,207,0 2 190609522 . ATTTTTCT A 928.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070;CNN_1D=0.281;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=-2.200;SOR=0.768 GT:AD:DP:GQ:PL 0/1:38,25:63:99:936,0,3267 2 190617643 . A G 2291.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.064;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.94;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2305,246,0 2 191064753 . C T 3632.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.636;CNN_1D=1.520;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.94;ReadPosRankSum=0.253;SOR=0.300 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3646,355,0 2 191161544 . G A 1045.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;CNN_1D=-0.383;DP=91;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=0.799;SOR=1.062 GT:AD:DP:GQ:PL 0/1:47,44:91:99:1053,0,1000 2 191224981 . G T 1896.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.227;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.30;SOR=1.230 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1910,200,0 2 191231458 . G A 3316.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.458;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.18;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3330,365,0 2 191231503 . G A 1272.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;CNN_1D=-4.173;DP=149;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.274;SOR=0.737 GT:AD:DP:GQ:PL 0/1:87,62:149:99:1280,0,1968 2 191235610 . A G 1647.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;CNN_1D=-2.956;DP=131;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-0.615;SOR=0.763 GT:AD:DP:GQ:PL 0/1:63,68:131:99:1655,0,1392 2 191235901 . A C 5208.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.164;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.10;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5222,537,0 2 191301368 . A G 1458.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;CNN_1D=-2.849;DP=120;ExcessHet=3.0103;FS=1.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-1.205;SOR=0.902 GT:AD:DP:GQ:PL 0/1:59,61:120:99:1466,0,1473 2 191354491 . T C 740.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.038;CNN_1D=-0.657;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=0.260;SOR=0.695 GT:AD:DP:GQ:PL 0/1:57,33:90:99:748,0,1271 2 191379268 . G A 1345.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;CNN_1D=-1.013;DP=111;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=1.226;SOR=0.783 GT:AD:DP:GQ:PL 0/1:53,58:111:99:1353,0,1097 2 191383778 . G A 909.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.646;CNN_1D=-1.049;DP=93;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=1.118;SOR=1.007 GT:AD:DP:GQ:PL 0/1:53,40:93:99:917,0,1122 2 191874667 . A G 996.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;CNN_1D=1.112;DP=77;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=0.336;SOR=0.847 GT:AD:DP:GQ:PL 0/1:38,39:77:99:1004,0,939 2 191922841 . G A 2930.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.709;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.13;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2944,324,0 2 191941054 . G GA 59.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;CNN_1D=-0.406;DP=48;ExcessHet=3.0103;FS=3.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=1.185;SOR=0.687 GT:AD:DP:GQ:PL 0/1:36,7:43:67:67,0,877 2 192011485 . T TA 73.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;CNN_1D=-1.982;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.510;SOR=0.701 GT:AD:DP:GQ:PL 0/1:47,10:57:81:81,0,1080 2 192160839 . A T 727.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.518;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.08;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,25:25:75:741,75,0 2 192160875 . C T 969.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.549;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.69;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,35:35:99:983,105,0 2 192250726 . G A 3544.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.051;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.13;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3558,378,0 2 192279327 . T C 2791.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.004;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.07;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2805,288,0 2 192701393 . A G 1189.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.897;CNN_1D=-1.344;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.050;SOR=0.729 GT:AD:DP:GQ:PL 0/1:51,47:98:99:1197,0,1217 2 192711162 . A C 2087.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.281;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.62;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2101,198,0 2 196673533 . A G 3438.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.417;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.16;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3452,342,0 2 196756535 . GA G 1169.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.518;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.83;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1183,126,0 2 196791276 . T G 893.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;CNN_1D=0.580;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=0.439;SOR=0.743 GT:AD:DP:GQ:PL 0/1:41,40:81:99:901,0,825 2 196851911 . G A 689.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.020;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.71;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,24:24:72:703,72,0 2 196866420 . C T 1986.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.470;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.21;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2000,219,0 2 196912067 . A G 1059.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;CNN_1D=2.623;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.37;ReadPosRankSum=-0.691;SOR=0.803 GT:AD:DP:GQ:PL 0/1:21,40:61:99:1067,0,397 2 197004439 . A G 754.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;CNN_1D=0.866;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-1.228;SOR=0.690 GT:AD:DP:GQ:PL 0/1:33,35:68:99:762,0,745 2 197021276 . T C 1514.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;CNN_1D=-1.617;DP=118;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=1.189;SOR=0.722 GT:AD:DP:GQ:PL 0/1:53,64:117:99:1522,0,1137 2 197021372 . T A 654.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040;CNN_1D=0.659;DP=68;ExcessHet=3.0103;FS=4.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.326;SOR=0.294 GT:AD:DP:GQ:PL 0/1:36,32:68:99:662,0,891 2 197118729 . C T 3033.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.632;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.08;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3047,324,0 2 197172816 . G A 272.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;CNN_1D=1.081;DP=42;ExcessHet=3.0103;FS=2.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-1.302;SOR=0.301 GT:AD:DP:GQ:PL 0/1:27,15:42:99:280,0,691 2 197184321 . C T 1785.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;CNN_1D=-3.508;DP=145;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=0.712;SOR=0.910 GT:AD:DP:GQ:PL 0/1:75,70:145:99:1793,0,1791 2 197866470 . T A 751.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;CNN_1D=0.740;DP=69;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-0.661;SOR=1.038 GT:AD:DP:GQ:PL 0/1:36,33:69:99:759,0,733 2 197986048 . T C 732.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;CNN_1D=0.829;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-0.894;SOR=0.682 GT:AD:DP:GQ:PL 0/1:34,31:65:99:740,0,791 2 198175297 . G C 880.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;CNN_1D=-0.211;DP=81;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.567;SOR=0.869 GT:AD:DP:GQ:PL 0/1:42,39:81:99:888,0,923 2 198257795 . T C 5797.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-4.355;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.22;SOR=0.760 GT:AD:DP:GQ:PL 1/1:0,213:213:99:5811,636,0 2 198265526 . A G 3731.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.257;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.15;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3745,383,0 2 198266862 . A T 839.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;CNN_1D=-1.246;DP=92;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=0.685;SOR=0.466 GT:AD:DP:GQ:PL 0/1:52,40:92:99:847,0,1172 2 198270017 . T C 1068.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;CNN_1D=0.949;DP=78;ExcessHet=3.0103;FS=9.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=0.075;SOR=0.470 GT:AD:DP:GQ:PL 0/1:35,43:78:99:1076,0,834 2 198283305 . T C 2989.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.103;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.30;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3003,306,0 2 198362018 . T C 2674.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.547;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.01;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2688,295,0 2 198508951 . G A 2758.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.016;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.58;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2772,299,0 2 198669871 . G C 810.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.032;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.93;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,29:29:87:824,87,0 2 198950232 . G A 1793.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;CNN_1D=-1.600;DP=132;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=1.891;SOR=0.554 GT:AD:DP:GQ:PL 0/1:59,73:132:99:1801,0,1407 2 198950240 . G A 5099.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.922;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.11;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,138:138:99:5113,418,0 2 200173684 . T G 2841.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.749;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.91;SOR=1.354 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2855,285,0 2 200776353 . T G 1203.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.735;CNN_1D=-1.123;DP=101;ExcessHet=3.0103;FS=6.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-0.051;SOR=1.273 GT:AD:DP:GQ:PL 0/1:54,47:101:99:1211,0,1285 2 201337769 . C T 789.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;CNN_1D=0.537;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.571;SOR=0.678 GT:AD:DP:GQ:PL 0/1:33,35:68:99:797,0,792 2 201354935 . C G 3881.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.338;CNN_1D=-0.295;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.12;ReadPosRankSum=-0.811;SOR=1.066 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3895,332,0 2 201437328 . C A 986.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;CNN_1D=-0.472;DP=86;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.874;SOR=0.560 GT:AD:DP:GQ:PL 0/1:45,41:86:99:994,0,1135 2 201437334 . T C 3079.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.869;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.42;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,85:85:99:3093,255,0 2 201468732 . C G 741.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;CNN_1D=-0.002;DP=84;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.916;SOR=0.803 GT:AD:DP:GQ:PL 0/1:50,34:84:99:749,0,1189 2 201778717 . TA T 92.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;CNN_1D=-1.763;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.658;SOR=0.758 GT:AD:DP:GQ:PL 0/1:51,11:62:99:100,0,945 2 202025621 . A G 1756.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;CNN_1D=-3.172;DP=145;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=0.182;SOR=0.605 GT:AD:DP:GQ:PL 0/1:67,77:144:99:1764,0,1519 2 202050677 . A G 756.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;CNN_1D=1.848;DP=67;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=1.233;SOR=0.468 GT:AD:DP:GQ:PL 0/1:36,31:67:99:764,0,860 2 202082459 . T A 725.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;CNN_1D=0.923;DP=65;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-1.078;SOR=0.869 GT:AD:DP:GQ:PL 0/1:31,34:65:99:733,0,688 2 202122995 . A G 2849.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.478;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.21;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2863,302,0 2 202149696 . G A 2093.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.947;CNN_1D=-8.862;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.967;SOR=0.667 GT:AD:DP:GQ:PL 0/1:127,99:226:99:2101,0,3054 2 202215492 . C G 1771.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.303;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.83;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1785,198,0 2 202245944 . TAA T 1119.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;CNN_1D=-0.941;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=-0.922;SOR=0.674 GT:AD:DP:GQ:PL 0/1:33,30:63:99:1127,0,1352 2 202260049 . G A 1963.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.729;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.65;SOR=0.840 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1977,213,0 2 202264156 . C T 857.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;CNN_1D=-1.210;DP=89;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.673;SOR=0.575 GT:AD:DP:GQ:PL 0/1:45,44:89:99:865,0,1005 2 202337730 . A G 1917.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.241;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.23;QD=27.78;SOR=0.910 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1931,207,0 2 202342402 . G T 799.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;CNN_1D=-4.225;DP=106;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-0.135;QD=7.62;ReadPosRankSum=-1.162;SOR=0.886 GT:AD:DP:GQ:PL 0/1:69,36:105:99:807,0,1684 2 202357949 . A C 1949.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.535;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.45;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1963,191,0 2 202410300 . A T 844.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.708;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.23;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,31:31:93:858,93,0 2 202469361 . C T 1080.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.665;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.00;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1094,120,0 2 202528830 . A AT 439.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;CNN_1D=1.358;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=1.643;SOR=0.804 GT:AD:DP:GQ:PL 0/1:16,17:33:99:447,0,408 2 202557702 . C T 3020.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.173;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.22;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3034,320,0 2 202571562 . C T 752.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;CNN_1D=-0.277;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-0.240;SOR=0.652 GT:AD:DP:GQ:PL 0/1:41,35:76:99:760,0,935 2 202575821 . G A 1720.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.015;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.74;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1734,186,0 2 202598113 . C T 714.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;CNN_1D=-0.457;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-0.023;SOR=0.771 GT:AD:DP:GQ:PL 0/1:49,35:84:99:722,0,1161 2 202625615 . C T 2348.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.017;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.99;SOR=1.124 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2362,242,0 2 202633582 . A G 826.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;CNN_1D=-1.788;DP=92;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-0.008;SOR=0.544 GT:AD:DP:GQ:PL 0/1:46,44:90:99:834,0,1074 2 202671381 . C G 166.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;CNN_1D=1.741;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=1.056;SOR=0.582 GT:AD:DP:GQ:PL 0/1:15,10:25:99:174,0,338 2 202712095 . A C 1999.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.863;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.76;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2013,215,0 2 202939654 . T C 1876.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;CNN_1D=-3.097;DP=150;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-0.258;SOR=0.529 GT:AD:DP:GQ:PL 0/1:71,79:150:99:1884,0,1650 2 202962310 . CT C 339.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;CNN_1D=-1.115;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=1.362;SOR=0.929 GT:AD:DP:GQ:PL 0/1:19,22:41:99:347,0,308 2 202964380 . G A 955.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;CNN_1D=-2.870;DP=111;ExcessHet=3.0103;FS=6.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-0.400;SOR=1.280 GT:AD:DP:GQ:PL 0/1:66,45:111:99:963,0,1490 2 202964528 . T C 557.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;CNN_1D=2.304;DP=47;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=1.696;SOR=1.072 GT:AD:DP:GQ:PL 0/1:26,20:46:99:565,0,675 2 202974360 . T G 941.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;CNN_1D=-2.055;DP=104;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.433;SOR=0.801 GT:AD:DP:GQ:PL 0/1:59,45:104:99:949,0,1349 2 203052947 . G A 1371.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;CNN_1D=-3.841;DP=149;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=1.546;SOR=0.784 GT:AD:DP:GQ:PL 0/1:82,67:149:99:1379,0,1841 2 203058233 . T C 797.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;CNN_1D=-0.483;DP=82;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-1.517;SOR=0.951 GT:AD:DP:GQ:PL 0/1:44,38:82:99:805,0,950 2 204062061 . A G 1719.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.038;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.29;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1733,189,0 2 204116690 . C T 1805.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.274;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.77;SOR=1.341 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1819,195,0 2 204154552 . C T 455.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;CNN_1D=2.379;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=0.263;SOR=0.521 GT:AD:DP:GQ:PL 0/1:15,22:37:99:463,0,308 2 204305093 . T C 1830.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;CNN_1D=-5.930;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=1.902;SOR=0.662 GT:AD:DP:GQ:PL 0/1:81,97:178:99:1838,0,1733 2 204322298 . T C 739.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;CNN_1D=-0.171;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.068;SOR=0.631 GT:AD:DP:GQ:PL 0/1:49,35:84:99:747,0,1154 2 204821494 . C T 322.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;CNN_1D=0.612;DP=44;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-0.217;SOR=0.973 GT:AD:DP:GQ:PL 0/1:27,17:44:99:330,0,585 2 204824324 . A C 1437.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;CNN_1D=-1.508;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-0.112;SOR=0.656 GT:AD:DP:GQ:PL 0/1:56,57:113:99:1445,0,1263 2 205829991 . C T 2912.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.802;CNN_1D=2.274;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.72;ReadPosRankSum=0.079;SOR=0.872 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2926,277,0 2 205912403 . T C 1079.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;CNN_1D=0.759;DP=86;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=-1.201;SOR=0.495 GT:AD:DP:GQ:PL 0/1:38,48:86:99:1087,0,816 2 205969220 . G A 652.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;CNN_1D=-1.325;DP=87;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=1.108;SOR=0.548 GT:AD:DP:GQ:PL 0/1:54,33:87:99:660,0,1254 2 205986321 . A G 1683.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;CNN_1D=-1.782;DP=120;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=-1.634;SOR=0.576 GT:AD:DP:GQ:PL 0/1:52,68:120:99:1691,0,1230 2 206364737 . T C 2480.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.251;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.18;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2494,264,0 2 206581033 . G A 4948.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.993;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.89;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,184:184:99:4962,551,0 2 206592695 . T C 1695.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;CNN_1D=-4.899;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.286;SOR=0.657 GT:AD:DP:GQ:PL 0/1:86,78:164:99:1703,0,1889 2 206608039 . T C 4990.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.454;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.53;SOR=0.970 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5004,507,0 2 206641239 . TCGCA T 1806.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;CNN_1D=-1.687;DP=115;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=0.571;SOR=0.808 GT:AD:DP:GQ:PL 0/1:66,48:114:99:1814,0,4394 2 206641245 . T TA 1815.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.639;CNN_1D=-1.732;DP=112;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.21;SOR=0.798 GT:AD:DP:GQ:PL 0/1:64,48:112:99:1823,0,4270 2 206874339 . G A 1351.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;CNN_1D=-4.813;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=0.694;SOR=0.670 GT:AD:DP:GQ:PL 0/1:95,64:159:99:1359,0,2071 2 206911228 . G A 344.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;CNN_1D=1.437;DP=50;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=1.781;SOR=0.625 GT:AD:DP:GQ:PL 0/1:29,21:50:99:352,0,674 2 206921451 . G A 1994.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;CNN_1D=-4.865;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-1.020;SOR=0.714 GT:AD:DP:GQ:PL 0/1:83,88:171:99:2002,0,1880 2 207006676 . T C 1364.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.859;CNN_1D=3.162;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.75;ReadPosRankSum=-0.728;SOR=1.007 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1378,103,0 2 207008763 . C A 1437.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.419;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.18;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1451,153,0 2 207014657 . TAA T 78.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;CNN_1D=-4.346;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-1.282;SOR=1.981 GT:AD:DP:GQ:PL 0/1:4,5:9:31:86,0,31 2 207025444 . T C 2741.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.763;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.41;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2755,299,0 2 207041053 . T C 5062.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.641;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.60;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5076,531,0 2 207041441 . G A 4070.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.934;CNN_1D=-0.357;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.69;ReadPosRankSum=-1.614;SOR=0.793 GT:AD:DP:GQ:PL 1/1:2,145:147:99:4084,390,0 2 207041933 . T C 2093.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.606;CNN_1D=3.588;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.78;ReadPosRankSum=-0.841;SOR=0.917 GT:AD:DP:GQ:PL 1/1:1,67:68:99:2107,164,0 2 207175391 . C T 1023.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;CNN_1D=0.398;DP=78;ExcessHet=3.0103;FS=3.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=-0.780;SOR=0.669 GT:AD:DP:GQ:PL 0/1:39,39:78:99:1031,0,915 2 207527840 . G T 1707.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;CNN_1D=-3.010;DP=134;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-1.790;SOR=0.751 GT:AD:DP:GQ:PL 0/1:63,71:134:99:1715,0,1448 2 207603234 . T G 276.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;CNN_1D=1.675;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.367;SOR=0.673 GT:AD:DP:GQ:PL 0/1:24,13:37:99:284,0,591 2 207621759 . A G 2522.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.933;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.34;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2536,267,0 2 207988613 . C T 4640.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.702;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.87;QD=29.74;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4654,468,0 2 207998800 . C T 3613.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.330;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.58;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3627,392,0 2 208477852 . G A 2862.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.897;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.11;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2876,275,0 2 208477956 . C T 3777.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.588;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.51;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3791,384,0 2 208633413 . T C 1995.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.365;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.69;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2009,195,0 2 208811097 . C T 2553.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.525;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.59;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2567,287,0 2 208841964 . A G 3941.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;CNN_1D=-0.123;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.75;ReadPosRankSum=-1.042;SOR=0.846 GT:AD:DP:GQ:PL 1/1:4,138:142:99:3955,327,0 2 208986637 . T C 3359.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.565;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.96;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3373,348,0 2 208989037 . A G 1982.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.028;CNN_1D=3.240;DP=67;ExcessHet=3.0103;FS=4.111;MLEAC=2;MLEAF=1.00;MQ=58.12;MQRankSum=-0.375;QD=29.58;ReadPosRankSum=-1.112;SOR=1.051 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1996,173,0 2 209007559 . T G 1881.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;CNN_1D=-6.337;DP=186;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.240;SOR=0.743 GT:AD:DP:GQ:PL 0/1:98,88:186:99:1889,0,2257 2 209010558 . A G 2014.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;CNN_1D=-4.526;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=0.063;SOR=0.666 GT:AD:DP:GQ:PL 0/1:75,88:163:99:2022,0,1617 2 209036712 . T C 2817.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.592;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.89;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2831,302,0 2 209036778 . A G 3668.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.427;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.17;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3682,404,0 2 209184980 . G A 1079.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.760;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.67;SOR=1.236 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1093,117,0 2 209184999 . C T 1447.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.803;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.30;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1461,159,0 2 209190330 . T C 4152.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.786;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.63;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4166,435,0 2 209190519 . A T 5263.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.368;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.88;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,119:119:99:5277,361,0 2 209190528 . C G 5257.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.133;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.99;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,118:118:99:5271,358,0 2 209191082 . C A 4839.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.056;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.69;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4853,489,0 2 209191099 . T C 4721.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.328;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.10;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4735,504,0 2 209207335 . C T 600.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;CNN_1D=-0.037;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=0.818;SOR=0.667 GT:AD:DP:GQ:PL 0/1:44,31:75:99:608,0,859 2 209209827 . G A 1749.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.027;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.91;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1763,194,0 2 209212707 . G A 2128.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.631;CNN_1D=2.090;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=-2.000;SOR=0.850 GT:AD:DP:GQ:PL 1/1:2,80:82:99:2142,196,0 2 209214770 . A G 1442.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.667;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.70;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1456,162,0 2 209215586 . A G 4025.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.456;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.20;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4039,443,0 2 210705348 . C G 815.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;CNN_1D=-2.232;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=0.177;SOR=0.681 GT:AD:DP:GQ:PL 0/1:64,39:103:99:823,0,1575 2 210745681 . C A 2065.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.397;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.68;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2079,216,0 2 210798699 . G C 1143.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;CNN_1D=1.137;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-1.577;SOR=0.779 GT:AD:DP:GQ:PL 0/1:29,49:78:99:1151,0,659 2 210810599 . A G 967.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;CNN_1D=-1.869;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=0.584;SOR=0.699 GT:AD:DP:GQ:PL 0/1:56,45:101:99:975,0,1289 2 210810644 . G A 1087.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;CNN_1D=-0.590;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=1.083;SOR=0.648 GT:AD:DP:GQ:PL 0/1:48,49:97:99:1095,0,1066 2 210838004 . TTC T 126.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;CNN_1D=-1.302;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.776;SOR=0.400 GT:AD:DP:GQ:PL 0/1:25,6:31:99:134,0,824 2 210843383 . G A 280.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;CNN_1D=-1.030;DP=58;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=0.835;SOR=0.941 GT:AD:DP:GQ:PL 0/1:43,15:58:99:288,0,1029 2 211319824 . T C 1743.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.276;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.67;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1757,188,0 2 211320041 . G GAA,GAAA 1612.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.086;CNN_1D=1.969;DP=71;ExcessHet=3.0103;FS=3.680;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=32.90;ReadPosRankSum=-0.672;SOR=0.769 GT:AD:DP:GQ:PL 1/2:1,38,10:49:71:1629,184,71,936,0,891 2 211456637 . A G 1743.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.447;CNN_1D=-0.775;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=2.782;SOR=0.667 GT:AD:DP:GQ:PL 0/1:73,48:121:99:1751,0,3633 2 211456639 . C T 1743.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.032;CNN_1D=-0.697;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=3.279;SOR=0.667 GT:AD:DP:GQ:PL 0/1:73,46:119:99:1751,0,3633 2 211476897 . C T 797.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197;CNN_1D=-1.144;DP=91;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=0.228;SOR=0.423 GT:AD:DP:GQ:PL 0/1:51,39:90:99:805,0,1286 2 211481257 . C G 1015.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430;CNN_1D=1.634;DP=69;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-1.933;SOR=0.612 GT:AD:DP:GQ:PL 0/1:26,43:69:99:1023,0,607 2 212578379 . TA T 96.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;CNN_1D=-1.510;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.054;SOR=0.892 GT:AD:DP:GQ:PL 0/1:43,12:55:99:104,0,879 2 214012508 . C T 1484.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;CNN_1D=-5.567;DP=161;ExcessHet=3.0103;FS=4.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.558;SOR=1.054 GT:AD:DP:GQ:PL 0/1:93,68:161:99:1492,0,2276 2 214228792 . C T 556.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.925;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.80;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,20:20:60:570,60,0 2 214794743 . A C 1528.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;CNN_1D=-2.863;DP=133;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=1.083;SOR=0.677 GT:AD:DP:GQ:PL 0/1:64,69:133:99:1536,0,1300 2 215632256 . A G 1169.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;CNN_1D=-3.567;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-0.940;SOR=0.710 GT:AD:DP:GQ:PL 0/1:64,56:120:99:1177,0,1415 2 215645464 . C G 2498.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;CNN_1D=-7.906;DP=228;ExcessHet=3.0103;FS=3.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=0.612;SOR=0.762 GT:AD:DP:GQ:PL 0/1:126,101:227:99:2506,0,3142 2 215865575 . T C 1478.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;CNN_1D=-3.313;DP=144;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-0.168;SOR=0.713 GT:AD:DP:GQ:PL 0/1:75,69:144:99:1486,0,1607 2 215876166 . A T 1110.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.758;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.00;SOR=1.802 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1124,111,0 2 215901774 . C T 627.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;CNN_1D=1.339;DP=55;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=0.025;SOR=0.892 GT:AD:DP:GQ:PL 0/1:26,29:55:99:635,0,559 2 216190020 . C G 599.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;CNN_1D=-0.147;DP=76;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=2.369;SOR=0.843 GT:AD:DP:GQ:PL 0/1:45,31:76:99:607,0,942 2 216229692 . A G 1248.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;CNN_1D=-5.293;DP=148;ExcessHet=3.0103;FS=4.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.249;SOR=1.093 GT:AD:DP:GQ:PL 0/1:89,59:148:99:1256,0,1985 2 216235089 . C T 1688.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.256;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.38;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1702,191,0 2 216240126 . AAC A 1052.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;CNN_1D=1.235;DP=60;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.80;ReadPosRankSum=-2.141;SOR=0.551 GT:AD:DP:GQ:PL 0/1:27,29:56:99:1060,0,1092 2 216242917 . T A 769.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;CNN_1D=-1.443;DP=85;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-1.370;SOR=0.590 GT:AD:DP:GQ:PL 0/1:48,37:85:99:777,0,1084 2 216249587 . C T 1256.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.557;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.91;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1270,135,0 2 216269209 . T G 1241.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;CNN_1D=-3.950;DP=136;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-0.123;SOR=0.765 GT:AD:DP:GQ:PL 0/1:75,61:136:99:1249,0,1713 2 216269254 . T G 1810.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;CNN_1D=-4.985;DP=161;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-0.907;SOR=0.632 GT:AD:DP:GQ:PL 0/1:79,82:161:99:1818,0,1699 2 216272900 . T G 3737.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.115;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.60;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3751,324,0 2 216272907 . A T 801.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;CNN_1D=-2.161;DP=103;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-2.630;SOR=0.449 GT:AD:DP:GQ:PL 0/1:62,40:102:99:809,0,1505 2 216283958 . T A 974.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;CNN_1D=-0.158;DP=86;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=0.709;SOR=0.468 GT:AD:DP:GQ:PL 0/1:40,45:85:99:982,0,862 2 216299550 . G A 1055.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;CNN_1D=1.865;DP=70;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-1.002;SOR=1.010 GT:AD:DP:GQ:PL 0/1:41,29:70:99:1063,0,1997 2 216299551 . C A 1055.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;CNN_1D=1.942;DP=67;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=-1.107;SOR=1.112 GT:AD:DP:GQ:PL 0/1:39,28:67:99:1063,0,1997 2 216300482 . T A 1483.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;CNN_1D=-2.677;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=0.966;SOR=0.726 GT:AD:DP:GQ:PL 0/1:68,65:133:99:1491,0,1457 2 216878008 . C G 3806.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.274;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.38;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3820,417,0 2 216904019 . A T 558.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;CNN_1D=2.047;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=-0.774;SOR=0.570 GT:AD:DP:GQ:PL 0/1:21,24:45:99:566,0,438 2 216923679 . C T 1095.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;CNN_1D=0.156;DP=84;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=-0.413;SOR=0.577 GT:AD:DP:GQ:PL 0/1:35,49:84:99:1103,0,707 2 217012901 . A G 3167.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.730;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.79;SOR=0.730 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3181,330,0 2 217148417 . C A 792.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;CNN_1D=-2.888;DP=104;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-0.497;SOR=0.662 GT:AD:DP:GQ:PL 0/1:65,39:104:99:800,0,1474 2 217315787 . T C 1326.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.562;CNN_1D=3.712;DP=57;ExcessHet=3.0103;FS=2.602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=23.68;ReadPosRankSum=2.530;SOR=1.255 GT:AD:DP:GQ:PL 1/1:3,53:56:81:1340,81,0 2 217498290 . C CGCCGCTGCT 1749.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.860;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=23.65;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1763,123,0 2 217541582 . T C 4188.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.434;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.92;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4202,449,0 2 218674697 . C T 3820.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.912;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.88;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3834,410,0 2 218683154 . A G 4892.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.812;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.47;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4906,498,0 2 218712306 . C T 1187.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;CNN_1D=-2.942;DP=117;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-0.506;SOR=0.791 GT:AD:DP:GQ:PL 0/1:63,54:117:99:1195,0,1510 2 218712606 . G A 1818.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;CNN_1D=-5.394;DP=169;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-1.437;SOR=0.707 GT:AD:DP:GQ:PL 0/1:91,78:169:99:1826,0,2215 2 218712726 . A G 2160.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;CNN_1D=-4.084;DP=156;ExcessHet=3.0103;FS=2.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=0.132;SOR=0.849 GT:AD:DP:GQ:PL 0/1:71,83:154:99:2168,0,1687 2 218712918 . C T 3615.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;CNN_1D=-3.266;DP=180;ExcessHet=3.0103;FS=4.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.09;ReadPosRankSum=0.623;SOR=0.842 GT:AD:DP:GQ:PL 0/1:82,98:180:99:3623,0,3614 2 218712936 . C T 3345.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;CNN_1D=-3.518;DP=168;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.91;ReadPosRankSum=0.030;SOR=0.876 GT:AD:DP:GQ:PL 0/1:79,89:168:99:3353,0,3579 2 218713282 . G A 2527.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;CNN_1D=-7.473;DP=209;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.904;SOR=0.840 GT:AD:DP:GQ:PL 0/1:107,102:209:99:2535,0,2753 2 218745685 . G A 5296.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.015;CNN_1D=-2.460;DP=196;ExcessHet=3.0103;FS=3.031;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.02;ReadPosRankSum=-1.491;SOR=0.110 GT:AD:DP:GQ:PL 1/1:2,194:196:99:5310,509,0 2 219000310 . C T 2547.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;CNN_1D=-9.467;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-0.918;QD=10.84;ReadPosRankSum=1.754;SOR=0.688 GT:AD:DP:GQ:PL 0/1:127,108:235:99:2555,0,3180 2 219103580 . A G 3045.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.654;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.95;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3059,339,0 2 219144815 . T C 3710.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.638;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.28;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3724,407,0 2 219146663 . C T 787.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;CNN_1D=-2.278;DP=81;ExcessHet=3.0103;FS=4.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-2.537;SOR=1.341 GT:AD:DP:GQ:PL 0/1:49,32:81:99:795,0,1235 2 219146803 . G A 4374.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.019;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.51;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4388,474,0 2 219221846 . G A 1668.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;CNN_1D=-2.991;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.716;SOR=0.693 GT:AD:DP:GQ:PL 0/1:73,73:146:99:1676,0,1573 2 219231807 . C T 2367.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.076;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.90;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2381,264,0 2 219249013 . C T 645.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;CNN_1D=-0.068;DP=66;ExcessHet=3.0103;FS=3.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-1.008;SOR=0.878 GT:AD:DP:GQ:PL 0/1:34,32:66:99:653,0,790 2 219254622 . A G 3121.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.530;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.63;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3135,327,0 2 219267781 . C T 2852.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.418;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.65;SOR=0.830 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2866,317,0 2 219319657 . A G 2671.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.661;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.54;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2685,290,0 2 219492924 . T C 4147.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.309;CNN_1D=-0.135;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.58;ReadPosRankSum=-1.459;SOR=0.504 GT:AD:DP:GQ:PL 1/1:3,153:156:99:4161,381,0 2 219508988 . T C 4014.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.432;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.88;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4028,390,0 2 219509285 . A C 3608.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.790;CNN_1D=1.343;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.93;ReadPosRankSum=2.971;SOR=0.480 GT:AD:DP:GQ:PL 1/1:5,129:134:99:3622,269,0 2 219509618 . C A 4563.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.354;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.63;SOR=0.920 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4577,462,0 2 219527852 . C A 885.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;CNN_1D=-1.809;DP=98;ExcessHet=3.0103;FS=2.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=1.869;SOR=0.996 GT:AD:DP:GQ:PL 0/1:61,37:98:99:893,0,1537 2 219678877 . C T 1512.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;CNN_1D=-1.532;DP=118;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=1.883;SOR=0.687 GT:AD:DP:GQ:PL 0/1:51,67:118:99:1520,0,1110 2 219692790 . A AG 4039.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.396;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.38;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,121:121:99:4053,364,0 2 219695487 . G C 1353.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;CNN_1D=-1.854;DP=112;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-0.505;SOR=0.810 GT:AD:DP:GQ:PL 0/1:52,60:112:99:1361,0,1052 2 219903258 . T G 2104.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.455;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.22;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2118,216,0 2 219903723 . C T 4886.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.768;CNN_1D=-2.878;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.99;ReadPosRankSum=0.075;SOR=1.068 GT:AD:DP:GQ:PL 1/1:2,179:181:99:4900,492,0 2 219920037 . A G 3630.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.030;CNN_1D=2.044;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.75;ReadPosRankSum=-0.653;SOR=0.404 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3644,326,0 2 219920412 . A G 5260.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.432;CNN_1D=0.117;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.06;ReadPosRankSum=1.416;SOR=0.242 GT:AD:DP:GQ:PL 1/1:1,174:175:99:5274,487,0 2 220033830 . A G 1408.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;CNN_1D=-2.499;DP=123;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=0.018;SOR=0.744 GT:AD:DP:GQ:PL 0/1:64,59:123:99:1416,0,1516 2 220037393 . A G 6291.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.155;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.13;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6305,648,0 2 220037444 . G A 1985.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;CNN_1D=-8.974;DP=227;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=1.235;SOR=0.592 GT:AD:DP:GQ:PL 0/1:132,95:227:99:1993,0,3311 2 220037666 . A G 2095.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;CNN_1D=-5.164;DP=164;ExcessHet=3.0103;FS=7.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-1.403;SOR=1.080 GT:AD:DP:GQ:PL 0/1:80,84:164:99:2103,0,1949 2 220037756 . A G 1543.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;CNN_1D=-3.195;DP=138;ExcessHet=3.0103;FS=2.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-0.912;SOR=0.894 GT:AD:DP:GQ:PL 0/1:71,67:138:99:1551,0,1793 2 220040330 . A G 568.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;CNN_1D=2.381;DP=48;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=1.339;SOR=0.693 GT:AD:DP:GQ:PL 0/1:20,28:48:99:576,0,429 2 220046840 . G A 2353.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.080;CNN_1D=-8.850;DP=228;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-0.671;SOR=0.839 GT:AD:DP:GQ:PL 0/1:125,103:228:99:2361,0,2774 2 220046975 . C A 2787.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;CNN_1D=-10.848;DP=270;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-0.224;SOR=0.575 GT:AD:DP:GQ:PL 0/1:144,126:270:99:2795,0,3503 2 220072766 . G T 4206.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.573;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.21;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4220,431,0 2 220083279 . C T 2992.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.214;CNN_1D=2.654;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.77;ReadPosRankSum=0.580;SOR=0.952 GT:AD:DP:GQ:PL 1/1:2,102:104:99:3006,263,0 2 220085845 . A G 5918.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.449;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.05;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5932,633,0 2 220113242 . T G 3278.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.473;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3292,336,0 2 220161860 . G A 1185.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;CNN_1D=-3.083;DP=126;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.653;SOR=0.940 GT:AD:DP:GQ:PL 0/1:78,48:126:99:1193,0,1988 2 220250147 . A G 1760.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.778;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.08;SOR=1.000 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1774,195,0 2 220250826 . G A 3039.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.134;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.63;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3053,329,0 2 220283259 . A G 3751.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.854;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.20;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3765,399,0 2 220283277 . T C 4148.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.099;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.42;SOR=0.996 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4162,423,0 2 220283592 . C T 1932.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;CNN_1D=-3.869;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-1.831;SOR=0.647 GT:AD:DP:GQ:PL 0/1:61,82:143:99:1940,0,1315 2 220313633 . G A 1708.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;CNN_1D=-2.827;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=1.482;SOR=0.668 GT:AD:DP:GQ:PL 0/1:64,70:134:99:1716,0,1578 2 220315970 . G A 3706.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;CNN_1D=-0.312;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.66;ReadPosRankSum=1.477;SOR=0.831 GT:AD:DP:GQ:PL 1/1:2,137:139:99:3720,366,0 2 220333950 . T C 3949.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.310;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.41;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3963,417,0 2 220348751 . C T 4548.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.186;CNN_1D=-1.959;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.29;ReadPosRankSum=0.430;SOR=0.730 GT:AD:DP:GQ:PL 1/1:8,165:173:99:4562,292,0 2 220353013 . G A 1549.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.515;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.79;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1563,156,0 2 220354108 . A G 3481.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.854;CNN_1D=1.277;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.53;ReadPosRankSum=0.398;SOR=0.476 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3495,328,0 2 220354365 . C T 3571.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.956;CNN_1D=1.764;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.27;ReadPosRankSum=-1.065;SOR=0.243 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3585,325,0 2 220355529 . A G 3270.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.895;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.44;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3284,345,0 2 220356520 . G T 2615.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.198;CNN_1D=2.040;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.15;ReadPosRankSum=-1.214;SOR=0.919 GT:AD:DP:GQ:PL 1/1:4,96:100:99:2629,201,0 2 220402671 . G T 1519.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.242;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.18;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1533,105,0 2 220402680 . T C 1621.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.154;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.40;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1635,114,0 2 220404381 . A G 3131.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.834;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.21;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3145,333,0 2 220405321 . T C 2791.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.369;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.48;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2805,294,0 2 220406722 . T C 4768.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.649;CNN_1D=0.278;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.43;ReadPosRankSum=0.663;SOR=0.322 GT:AD:DP:GQ:PL 1/1:1,161:162:99:4782,449,0 2 220412256 . T C 3271.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.512;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.21;SOR=1.262 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3285,336,0 2 220414016 . C T 3070.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.565;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.10;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3084,305,0 2 220417364 . G T 2041.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;CNN_1D=-3.597;DP=151;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=0.026;SOR=0.612 GT:AD:DP:GQ:PL 0/1:68,83:151:99:2049,0,1564 2 220419236 . T C 3574.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.754;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.29;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3588,354,0 2 220419339 . T C 4910.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.049;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.28;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4924,540,0 2 220420716 . G A 861.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;CNN_1D=0.113;DP=80;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=0.419;SOR=0.582 GT:AD:DP:GQ:PL 0/1:39,41:80:99:869,0,869 2 220420956 . A G 4221.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.121;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.95;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4235,453,0 2 220421417 . C G 4447.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.074;CNN_1D=0.274;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.45;ReadPosRankSum=0.547;SOR=0.666 GT:AD:DP:GQ:PL 1/1:3,148:151:99:4461,363,0 2 220430203 . C T 4838.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.050;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.24;SOR=1.102 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4852,479,0 2 220431631 . G T 3155.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;CNN_1D=2.782;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.68;ReadPosRankSum=1.310;SOR=0.534 GT:AD:DP:GQ:PL 1/1:3,111:114:99:3169,266,0 2 220432014 . G A 4330.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.937;CNN_1D=0.243;DP=145;ExcessHet=3.0103;FS=3.690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.86;ReadPosRankSum=-1.517;SOR=0.735 GT:AD:DP:GQ:PL 1/1:1,144:145:99:4344,394,0 2 220435034 . A G 4883.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.864;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.96;SOR=1.110 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4897,489,0 2 220462640 . G T 3170.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.155;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.08;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3184,327,0 2 220476443 . C T 4275.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.400;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.08;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4289,439,0 2 220494118 . A C 4246.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.238;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.33;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4260,420,0 2 220500423 . A G 3862.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.831;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.57;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,86:86:99:3876,262,0 2 220500426 . A G 3911.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.211;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.86;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3925,268,0 2 220502367 . A C 2060.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;CNN_1D=-6.106;DP=186;ExcessHet=3.0103;FS=2.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-1.358;SOR=0.838 GT:AD:DP:GQ:PL 0/1:95,91:186:99:2068,0,2072 2 220505265 . T C 4728.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.895;CNN_1D=-0.566;DP=165;ExcessHet=3.0103;FS=3.090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.65;ReadPosRankSum=1.050;SOR=0.301 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4742,455,0 2 222290829 . C T 1000.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;CNN_1D=-1.294;DP=102;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=0.766;SOR=0.854 GT:AD:DP:GQ:PL 0/1:59,43:102:99:1008,0,1330 2 223066919 . C G 1339.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;CNN_1D=-1.296;DP=108;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=0.338;SOR=0.497 GT:AD:DP:GQ:PL 0/1:55,53:108:99:1347,0,1459 2 223161889 . A G 4729.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.194;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.56;SOR=1.319 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4743,478,0 2 223423362 . A G 4062.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.100;CNN_1D=0.407;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.41;ReadPosRankSum=1.221;SOR=0.796 GT:AD:DP:GQ:PL 1/1:2,141:143:99:4076,379,0 2 223436607 . C T 2956.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.087;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.87;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2970,329,0 2 223559089 . T C 1161.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.480;CNN_1D=-2.510;DP=108;ExcessHet=3.0103;FS=4.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.242;SOR=1.184 GT:AD:DP:GQ:PL 0/1:61,47:108:99:1169,0,1354 2 223773523 . C T 265.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;CNN_1D=0.237;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-2.131;SOR=0.596 GT:AD:DP:GQ:PL 0/1:32,13:45:99:273,0,808 2 223787559 . G A 1840.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.220;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.21;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1854,188,0 2 223917629 . C T 1073.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;CNN_1D=-4.142;DP=133;ExcessHet=3.0103;FS=2.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.782;SOR=0.898 GT:AD:DP:GQ:PL 0/1:80,53:133:99:1081,0,1949 2 223917812 . T C 1222.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;CNN_1D=-2.574;DP=115;ExcessHet=3.0103;FS=4.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.901;SOR=1.094 GT:AD:DP:GQ:PL 0/1:62,53:115:99:1230,0,1559 2 223917983 . T G 1467.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649;CNN_1D=-5.551;DP=162;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-2.995;SOR=0.658 GT:AD:DP:GQ:PL 0/1:89,73:162:99:1475,0,2061 2 224763672 . T C 874.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;CNN_1D=-1.610;DP=109;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-0.457;SOR=0.938 GT:AD:DP:GQ:PL 0/1:63,46:109:99:882,0,1318 2 224765894 . G A 1920.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.331;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.54;SOR=1.000 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1934,195,0 2 224824617 . A G 1384.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;CNN_1D=-0.087;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-1.766;SOR=0.714 GT:AD:DP:GQ:PL 0/1:41,58:99:99:1392,0,874 2 224862842 . A G 705.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;CNN_1D=-1.822;DP=93;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-0.492;SOR=0.557 GT:AD:DP:GQ:PL 0/1:58,35:93:99:713,0,1363 2 225669996 . A G 1197.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;CNN_1D=-0.351;DP=92;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=0.364;SOR=0.797 GT:AD:DP:GQ:PL 0/1:44,48:92:99:1205,0,1132 2 225670901 . G C 1046.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;CNN_1D=-1.441;DP=109;ExcessHet=3.0103;FS=5.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-1.533;SOR=0.663 GT:AD:DP:GQ:PL 0/1:61,48:109:99:1054,0,1525 2 225679031 . A C 449.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;CNN_1D=1.928;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-1.247;SOR=0.718 GT:AD:DP:GQ:PL 0/1:21,19:40:99:457,0,464 2 225684166 . A G 675.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.382;CNN_1D=-0.246;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.698;SOR=0.717 GT:AD:DP:GQ:PL 0/1:41,29:70:99:683,0,894 2 225719693 . G A 918.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;CNN_1D=0.720;DP=70;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=0.738;SOR=1.005 GT:AD:DP:GQ:PL 0/1:28,42:70:99:926,0,557 2 225751256 . TA T 63.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;CNN_1D=-0.600;DP=51;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.184;SOR=0.324 GT:AD:DP:GQ:PL 0/1:34,8:42:71:71,0,736 2 225811581 . T A 826.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696;CNN_1D=1.123;DP=69;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.324;SOR=0.977 GT:AD:DP:GQ:PL 0/1:28,40:68:99:834,0,620 2 226273689 . T C 2702.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.788;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.15;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2716,288,0 2 226273749 . T G 542.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;CNN_1D=-1.013;DP=86;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=1.466;SOR=0.565 GT:AD:DP:GQ:PL 0/1:58,28:86:99:550,0,1522 2 226447735 . C T 1907.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.759;CNN_1D=3.208;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.80;ReadPosRankSum=-0.433;SOR=1.096 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1921,151,0 2 226491770 . A C 3039.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.720;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.22;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3053,312,0 2 227660544 . C T 1322.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;CNN_1D=0.002;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=0.866;SOR=0.683 GT:AD:DP:GQ:PL 0/1:41,53:94:99:1330,0,1018 2 227661305 . G A 1658.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;CNN_1D=-5.728;DP=170;ExcessHet=3.0103;FS=1.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-1.652;SOR=0.768 GT:AD:DP:GQ:PL 0/1:96,74:170:99:1666,0,2383 2 227662753 . C T 1812.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;CNN_1D=-6.301;DP=175;ExcessHet=3.0103;FS=1.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-1.490;SOR=0.840 GT:AD:DP:GQ:PL 0/1:98,76:174:99:1820,0,2272 2 227872182 . G A 1654.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;CNN_1D=-4.115;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=1.743;SOR=0.672 GT:AD:DP:GQ:PL 0/1:82,73:155:99:1662,0,1762 2 227872995 . T C 1761.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;CNN_1D=-1.123;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=1.262;SOR=0.649 GT:AD:DP:GQ:PL 0/1:52,67:119:99:1769,0,1241 2 227873028 . A G 1293.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;CNN_1D=0.897;DP=90;ExcessHet=3.0103;FS=3.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=2.193;SOR=0.394 GT:AD:DP:GQ:PL 0/1:40,50:90:99:1301,0,992 2 227886773 . A G 693.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;CNN_1D=-0.049;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=3.067;SOR=0.770 GT:AD:DP:GQ:PL 0/1:44,34:78:99:701,0,998 2 227892619 . C T 392.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;CNN_1D=1.757;DP=38;ExcessHet=3.0103;FS=2.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=2.218;SOR=1.244 GT:AD:DP:GQ:PL 0/1:21,17:38:99:400,0,488 2 227892720 . C T 422.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;CNN_1D=0.369;DP=43;ExcessHet=3.0103;FS=6.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-2.698;SOR=0.718 GT:AD:DP:GQ:PL 0/1:22,21:43:99:430,0,516 2 227896652 . C G 660.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;CNN_1D=0.352;DP=73;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=1.786;SOR=0.584 GT:AD:DP:GQ:PL 0/1:41,32:73:99:668,0,913 2 227896886 . C T 912.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;CNN_1D=-0.165;DP=80;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-0.276;SOR=0.512 GT:AD:DP:GQ:PL 0/1:44,36:80:99:920,0,1154 2 227896976 . C T 493.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;CNN_1D=0.149;DP=66;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=-0.260;SOR=0.908 GT:AD:DP:GQ:PL 0/1:42,24:66:99:501,0,1043 2 227915832 . G A 1506.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;CNN_1D=-3.828;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=2.352;SOR=0.669 GT:AD:DP:GQ:PL 0/1:83,69:152:99:1514,0,1921 2 227954599 . G A 1399.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;CNN_1D=-2.752;DP=132;ExcessHet=3.0103;FS=3.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=-0.285;SOR=0.559 GT:AD:DP:GQ:PL 0/1:66,66:132:99:1407,0,1443 2 228111435 . T C 2060.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.211;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.22;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2074,219,0 2 228113175 . A G 768.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.815;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.54;SOR=1.220 GT:AD:DP:GQ:PL 1/1:0,26:26:78:782,78,0 2 228128540 . C T 1964.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501;CNN_1D=2.984;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.66;ReadPosRankSum=-1.416;SOR=0.330 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1978,174,0 2 228128568 . G A 754.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;CNN_1D=-1.567;DP=91;ExcessHet=3.0103;FS=7.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-0.029;SOR=0.785 GT:AD:DP:GQ:PL 0/1:53,37:90:99:762,0,1157 2 228131169 . A G 942.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;CNN_1D=-1.902;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=2.835;SOR=0.704 GT:AD:DP:GQ:PL 0/1:59,47:106:99:950,0,1260 2 228131752 . G A 798.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;CNN_1D=-0.132;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.639;SOR=0.701 GT:AD:DP:GQ:PL 0/1:39,37:76:99:806,0,897 2 228135631 . C T 1006.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;CNN_1D=2.331;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=-0.789;SOR=0.616 GT:AD:DP:GQ:PL 0/1:22,44:66:99:1014,0,414 2 228194480 . A T 1057.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;CNN_1D=0.061;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=0.941;SOR=0.746 GT:AD:DP:GQ:PL 0/1:54,29:83:99:1065,0,2681 2 228194481 . G T 1057.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;CNN_1D=-0.267;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=0.700;SOR=0.675 GT:AD:DP:GQ:PL 0/1:54,30:84:99:1065,0,2681 2 228197238 . G A 988.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;CNN_1D=-2.086;DP=144;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=2.491;QD=7.32;ReadPosRankSum=-0.252;SOR=0.550 GT:AD:DP:GQ:PL 0/1:82,53:135:99:996,0,1857 2 228243905 . G A 1706.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115;CNN_1D=-2.361;DP=140;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=0.356;SOR=0.628 GT:AD:DP:GQ:PL 0/1:63,77:140:99:1714,0,1398 2 228356364 . GT G 480.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.208;CNN_1D=0.286;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=21.82;ReadPosRankSum=-0.172;SOR=1.127 GT:AD:DP:GQ:PL 1/1:2,20:22:45:494,45,0 2 228416712 . A G 2259.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.735;CNN_1D=2.690;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=2.367;SOR=0.740 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2273,214,0 2 228476140 . C T 1248.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;CNN_1D=0.418;DP=97;ExcessHet=3.0103;FS=5.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=0.329;SOR=0.320 GT:AD:DP:GQ:PL 0/1:46,51:97:99:1256,0,1145 2 228476253 . C G 3927.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.298;CNN_1D=1.089;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.46;ReadPosRankSum=-0.175;SOR=0.377 GT:AD:DP:GQ:PL 1/1:3,135:138:99:3941,309,0 2 228493211 . G A 580.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;CNN_1D=-1.116;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=1.361;SOR=0.721 GT:AD:DP:GQ:PL 0/1:57,33:90:99:588,0,1267 2 228560800 . GA G 2807.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.612;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.18;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2821,280,0 2 228758554 . A T 2437.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.037;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.34;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2451,258,0 2 228883029 . A C 1352.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;CNN_1D=-2.737;DP=118;ExcessHet=3.0103;FS=3.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-0.872;SOR=1.011 GT:AD:DP:GQ:PL 0/1:59,59:118:99:1360,0,1394 2 228883721 . T C 3826.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.786;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.62;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3840,363,0 2 230453214 . G GA 1540.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.091;CNN_1D=2.098;DP=79;ExcessHet=3.0103;FS=1.842;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=22.32;ReadPosRankSum=1.883;SOR=0.721 GT:AD:DP:GQ:PL 1/1:5,64:69:69:1554,69,0 2 230632268 . G A 1210.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;CNN_1D=-1.802;DP=111;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-0.750;SOR=0.488 GT:AD:DP:GQ:PL 0/1:57,54:111:99:1218,0,1509 2 230668858 . T C 2421.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.959;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.83;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2435,261,0 2 230861519 . G T 1027.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;CNN_1D=-0.235;DP=75;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.176;QD=13.70;ReadPosRankSum=0.199;SOR=0.634 GT:AD:DP:GQ:PL 0/1:31,44:75:99:1035,0,671 2 231042276 . A G 876.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;CNN_1D=-4.962;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=0.012;SOR=0.712 GT:AD:DP:GQ:PL 0/1:84,47:131:99:884,0,1894 2 231050715 . A G 3226.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.849;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.57;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3240,350,0 2 231072709 . C T 1038.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;CNN_1D=0.360;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=1.792;SOR=0.648 GT:AD:DP:GQ:PL 0/1:44,47:91:99:1046,0,1010 2 231077725 . A G 4344.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.321;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.96;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4358,450,0 2 231120255 . CG C 4041.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;CNN_1D=-1.443;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.68;ReadPosRankSum=-0.737;SOR=0.976 GT:AD:DP:GQ:PL 1/1:4,142:146:99:4055,323,0 2 231120257 . G C 1410.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;CNN_1D=-4.954;DP=156;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-1.049;SOR=0.548 GT:AD:DP:GQ:PL 0/1:79,72:151:99:1418,0,1877 2 231149108 . G A 4027.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.474;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.16;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4041,429,0 2 231258150 . C T 1464.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.569;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.62;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1478,164,0 2 231331896 . G A 723.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;CNN_1D=0.004;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=0.216;SOR=0.752 GT:AD:DP:GQ:PL 0/1:44,33:77:99:731,0,983 2 231363252 . TA T 292.67 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;CNN_1D=0.579;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.51;ReadPosRankSum=-1.615;SOR=0.836 GT:AD:DP:GQ:PL 0/1:2,13:15:8:300,0,8 2 231368897 . G T 686.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;CNN_1D=0.387;DP=70;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=-1.712;SOR=0.998 GT:AD:DP:GQ:PL 0/1:41,29:70:99:694,0,946 2 231406680 . T C 5055.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.696;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.61;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5069,568,0 2 231407663 . C T 420.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;CNN_1D=1.618;DP=50;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-0.129;SOR=0.384 GT:AD:DP:GQ:PL 0/1:30,20:50:99:428,0,693 2 231738168 . G A 2428.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;CNN_1D=-7.474;DP=209;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.066;SOR=0.760 GT:AD:DP:GQ:PL 0/1:100,108:208:99:2436,0,2357 2 231738263 . C T 2997.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;CNN_1D=-3.896;DP=173;ExcessHet=3.0103;FS=2.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.33;ReadPosRankSum=-0.120;SOR=0.495 GT:AD:DP:GQ:PL 0/1:92,81:173:99:3005,0,4698 2 231738269 . G A 2966.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;CNN_1D=-3.303;DP=163;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=-0.783;SOR=0.521 GT:AD:DP:GQ:PL 0/1:86,77:163:99:2974,0,4618 2 231775543 . G A 1690.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;CNN_1D=-4.195;DP=148;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.907;SOR=0.808 GT:AD:DP:GQ:PL 0/1:75,73:148:99:1698,0,1813 2 231861032 . TCAGCAGCCTAGCCCTGAATCCACACCA T 4625.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;CNN_1D=-15.625;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=1.887;SOR=0.711 GT:AD:DP:GQ:PL 0/1:190,137:327:99:4633,0,8459 2 231865144 . G C 1351.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;CNN_1D=-0.019;DP=92;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=0.474;SOR=0.836 GT:AD:DP:GQ:PL 0/1:39,53:92:99:1359,0,817 2 231902497 . G A 45.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;CNN_1D=-0.131;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-0.046;SOR=0.693 GT:AD:DP:GQ:PL 0/1:8,3:11:53:53,0,194 2 232087474 . A G 2686.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.074;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.70;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2700,181,0 2 232087475 . T A 2686.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.114;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.02;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2700,181,0 2 232196564 . C T 1510.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;CNN_1D=-1.912;DP=114;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=-0.958;SOR=0.756 GT:AD:DP:GQ:PL 0/1:51,63:114:99:1518,0,1082 2 232196597 . G A 1111.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;CNN_1D=-0.116;DP=89;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-0.736;SOR=1.022 GT:AD:DP:GQ:PL 0/1:42,47:89:99:1119,0,892 2 232225535 . C CG 5998.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.395;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.51;SOR=0.750 GT:AD:DP:GQ:PL 1/1:0,179:179:99:6012,538,0 2 232263127 . G A 1242.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;CNN_1D=-3.168;DP=131;ExcessHet=3.0103;FS=5.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.009;SOR=0.922 GT:AD:DP:GQ:PL 0/1:75,56:131:99:1250,0,1775 2 232320856 . G GA 477.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;CNN_1D=0.263;DP=73;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=0.143;SOR=0.504 GT:AD:DP:GQ:PL 0/1:36,24:60:99:485,0,830 2 232325414 . TTCA T 2626.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;CNN_1D=-3.672;DP=137;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.20;ReadPosRankSum=-0.740;SOR=0.869 GT:AD:DP:GQ:PL 0/1:62,68:130:99:2634,0,2563 2 232326417 . C T 2279.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;CNN_1D=-6.270;DP=184;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=0.070;SOR=0.747 GT:AD:DP:GQ:PL 0/1:88,95:183:99:2287,0,1965 2 232389744 . A G 911.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;CNN_1D=-1.226;DP=88;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=-0.587;SOR=0.445 GT:AD:DP:GQ:PL 0/1:46,41:87:99:919,0,1108 2 232458443 . T C 1619.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;CNN_1D=-1.867;DP=123;ExcessHet=3.0103;FS=9.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=0.684;SOR=1.049 GT:AD:DP:GQ:PL 0/1:56,65:121:99:1627,0,1395 2 233195480 . C T 1111.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;CNN_1D=-3.432;DP=118;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=-2.217;SOR=0.602 GT:AD:DP:GQ:PL 0/1:67,51:118:99:1119,0,1580 2 233243981 . A T 2886.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;CNN_1D=-9.036;DP=256;ExcessHet=3.0103;FS=5.840;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-1.112;SOR=0.864 GT:AD:DP:GQ:PL 0/1:123,132:255:99:2894,0,2799 2 233244586 . C G 6406.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.242;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.76;QD=28.22;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6420,681,0 2 233244930 . G C 2808.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;CNN_1D=-9.914;DP=183;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=55.68;MQRankSum=-7.114;QD=15.52;ReadPosRankSum=-0.558;SOR=0.606 GT:AD:DP:GQ:PL 0/1:77,104:181:99:2816,0,1672 2 233244937 . A G 180.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;CNN_1D=-13.405;DP=192;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=55.59;MQRankSum=-4.940;QD=0.95;ReadPosRankSum=-2.276;SOR=0.866 GT:AD:DP:GQ:PL 0/1:162,28:190:99:188,0,6304 2 233245141 . T C 4442.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;CNN_1D=-16.094;DP=289;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=52.98;MQRankSum=-10.790;QD=15.43;ReadPosRankSum=-0.215;SOR=0.591 GT:AD:DP:GQ:PL 0/1:102,186:288:99:4450,0,2058 2 233245210 . C T 1819.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;CNN_1D=-15.920;DP=289;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=50.30;MQRankSum=-4.713;QD=6.32;ReadPosRankSum=-1.080;SOR=0.665 GT:AD:DP:GQ:PL 0/1:193,95:288:99:1827,0,4920 2 233273504 . T G 93.80 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=0.887;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.10;QD=31.27;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:107,9,0 2 233274145 . G C 2161.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;CNN_1D=1.392;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQRankSum=-1.062;QD=30.44;ReadPosRankSum=-0.610;SOR=0.633 GT:AD:DP:GQ:PL 1/1:1,70:71:99:2175,179,0 2 233323052 . G A 2994.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;CNN_1D=-9.570;DP=253;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=-1.521;SOR=0.600 GT:AD:DP:GQ:PL 0/1:119,134:253:99:3002,0,2526 2 233349588 . G A 2661.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.630;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.57;SOR=1.166 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2675,270,0 2 233385396 . G A 4398.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.337;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.01;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4412,470,0 2 233386583 . T C 709.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;CNN_1D=2.313;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=0.745;SOR=0.593 GT:AD:DP:GQ:PL 0/1:26,31:57:99:717,0,570 2 233388813 . T G 1492.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.439;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.26;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1506,153,0 2 233389918 . A G 3469.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.121;CNN_1D=1.477;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.89;ReadPosRankSum=-0.027;SOR=0.309 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3483,348,0 2 233390937 . A G 4466.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.296;CNN_1D=-1.108;DP=166;ExcessHet=3.0103;FS=6.153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.90;ReadPosRankSum=-0.207;SOR=0.193 GT:AD:DP:GQ:PL 1/1:2,164:166:99:4480,448,0 2 233599904 . A C 499.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;CNN_1D=1.836;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=1.507;SOR=0.714 GT:AD:DP:GQ:PL 0/1:28,24:52:99:507,0,652 2 233633460 . G A 1079.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;CNN_1D=-1.056;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-1.699;SOR=0.629 GT:AD:DP:GQ:PL 0/1:50,48:98:99:1087,0,1279 2 233708806 . A G 832.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;CNN_1D=0.705;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.746;SOR=0.802 GT:AD:DP:GQ:PL 0/1:37,37:74:99:840,0,815 2 233712049 . G A 449.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;CNN_1D=1.383;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=-1.465;SOR=0.593 GT:AD:DP:GQ:PL 0/1:22,23:45:99:457,0,496 2 233712226 . CACA C 1757.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;CNN_1D=-2.984;DP=122;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=0.659;SOR=0.744 GT:AD:DP:GQ:PL 0/1:67,52:119:99:1765,0,2873 2 233757679 . G A 2208.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;CNN_1D=-6.382;DP=196;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-0.802;SOR=0.575 GT:AD:DP:GQ:PL 0/1:96,100:196:99:2216,0,2131 2 233757697 . A G 4845.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.629;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.01;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4859,501,0 2 233785015 . G A 2739.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.556;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.45;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2753,279,0 2 233834975 . A G 2567.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.600;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.46;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2581,291,0 2 233990594 . A G 1095.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;CNN_1D=-2.465;DP=121;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=2.839;SOR=0.829 GT:AD:DP:GQ:PL 0/1:69,52:121:99:1103,0,1510 2 234054873 . G A 1054.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;CNN_1D=-2.888;DP=122;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=0.354;SOR=0.798 GT:AD:DP:GQ:PL 0/1:72,50:122:99:1062,0,1620 2 234055004 . T C 794.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;CNN_1D=1.685;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=0.634;SOR=0.606 GT:AD:DP:GQ:PL 0/1:30,33:63:99:802,0,737 2 234066969 . C G 705.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;CNN_1D=-0.676;DP=87;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=2.219;SOR=0.470 GT:AD:DP:GQ:PL 0/1:53,34:87:99:713,0,1387 2 234067017 . A G 779.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;CNN_1D=-3.893;DP=118;ExcessHet=3.0103;FS=6.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-0.739;SOR=1.092 GT:AD:DP:GQ:PL 0/1:78,40:118:99:787,0,1829 2 234078056 . AC A 703.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.105;CNN_1D=-1.467;DP=76;ExcessHet=3.0103;FS=3.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.303;SOR=1.201 GT:AD:DP:GQ:PL 0/1:50,23:73:99:711,0,1788 2 234171812 . A G 1685.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;CNN_1D=-4.808;DP=165;ExcessHet=3.0103;FS=2.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-0.698;SOR=0.611 GT:AD:DP:GQ:PL 0/1:89,76:165:99:1693,0,1925 2 234183368 . A G 1724.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.839;CNN_1D=3.021;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.94;ReadPosRankSum=-1.100;SOR=0.899 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1738,142,0 2 234255547 . G A 1325.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;CNN_1D=-0.693;DP=105;ExcessHet=3.0103;FS=3.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-0.159;SOR=0.430 GT:AD:DP:GQ:PL 0/1:44,61:105:99:1333,0,974 2 234386134 . A G 1054.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;CNN_1D=0.976;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=0.807;SOR=0.716 GT:AD:DP:GQ:PL 0/1:31,47:78:99:1062,0,622 2 234394487 . G A 2004.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;CNN_1D=-3.702;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=1.296;SOR=0.654 GT:AD:DP:GQ:PL 0/1:66,86:152:99:2012,0,1441 2 234394569 . A G 1782.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;CNN_1D=-3.713;DP=158;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=-0.237;SOR=0.642 GT:AD:DP:GQ:PL 0/1:78,80:158:99:1790,0,1732 2 234429739 . T TTTC 1665.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;CNN_1D=0.751;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.82;ReadPosRankSum=0.912;SOR=0.623 GT:AD:DP:GQ:PL 0/1:55,44:99:99:1673,0,2576 2 234432017 . A G 1819.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;CNN_1D=-5.917;DP=179;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=0.554;SOR=0.629 GT:AD:DP:GQ:PL 0/1:94,84:178:99:1827,0,2104 2 234449316 . G A 607.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;CNN_1D=-1.047;DP=75;ExcessHet=3.0103;FS=3.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-1.764;SOR=1.086 GT:AD:DP:GQ:PL 0/1:45,30:75:99:615,0,1060 2 234590970 . T G 3914.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.914;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.95;QD=32.96;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,84:84:99:3928,265,0 2 234590974 . C A 4006.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.014;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.95;QD=33.22;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,88:88:99:4020,271,0 2 234590975 . G A 4006.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.015;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.96;QD=31.65;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,90:90:99:4020,271,0 2 234591339 . G A 3820.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.214;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.30;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3834,405,0 2 234621780 . T C 5211.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.444;CNN_1D=1.948;DP=129;ExcessHet=3.0103;FS=4.466;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=32.21;ReadPosRankSum=-0.415;SOR=0.351 GT:AD:DP:GQ:PL 1/1:4,125:129:99:5225,176,0 2 234621787 . C G 5097.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.523;CNN_1D=1.407;DP=120;ExcessHet=3.0103;FS=4.433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.25;ReadPosRankSum=-0.044;SOR=0.333 GT:AD:DP:GQ:PL 1/1:4,116:120:99:5111,164,0 2 234621825 . T C 2836.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.002;CNN_1D=3.116;DP=97;ExcessHet=3.0103;FS=3.433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.24;ReadPosRankSum=-1.179;SOR=0.563 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2850,252,0 2 234622061 . C A 6328.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.781;CNN_1D=-2.772;DP=207;ExcessHet=3.0103;FS=3.074;MLEAC=2;MLEAF=1.00;MQ=59.99;MQRankSum=0.000;QD=30.57;ReadPosRankSum=1.172;SOR=0.285 GT:AD:DP:GQ:PL 1/1:1,206:207:99:6342,585,0 2 234622110 . C G 6943.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.879;CNN_1D=-4.438;DP=236;ExcessHet=3.0103;FS=1.709;MLEAC=2;MLEAF=1.00;MQ=59.99;MQRankSum=-0.118;QD=29.42;ReadPosRankSum=0.391;SOR=0.548 GT:AD:DP:GQ:PL 1/1:5,231:236:99:6957,570,0 2 234622282 . C T 6897.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.257;CNN_1D=-6.442;DP=240;ExcessHet=3.0103;FS=2.050;MLEAC=2;MLEAF=1.00;MQ=55.45;MQRankSum=-1.397;QD=28.74;ReadPosRankSum=-1.362;SOR=0.259 GT:AD:DP:GQ:PL 1/1:4,236:240:99:6911,589,0 2 234622294 . C T 6843.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.267;CNN_1D=-6.479;DP=240;ExcessHet=3.0103;FS=2.050;MLEAC=2;MLEAF=1.00;MQ=54.58;MQRankSum=-1.527;QD=28.51;ReadPosRankSum=-0.741;SOR=0.259 GT:AD:DP:GQ:PL 1/1:4,236:240:99:6857,589,0 2 234622310 . C T 6702.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.208;CNN_1D=-7.188;DP=237;ExcessHet=3.0103;FS=2.036;MLEAC=2;MLEAF=1.00;MQ=53.18;MQRankSum=-1.761;QD=28.28;ReadPosRankSum=0.552;SOR=0.280 GT:AD:DP:GQ:PL 1/1:4,233:237:99:6716,578,0 2 234622379 . C A 6449.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.294;CNN_1D=-2.996;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQRankSum=-1.953;QD=31.57;ReadPosRankSum=0.803;SOR=1.171 GT:AD:DP:GQ:PL 1/1:2,145:147:99:6463,361,0 2 234622382 . G C 6498.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;CNN_1D=-3.850;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQRankSum=-1.990;QD=32.31;ReadPosRankSum=0.448;SOR=1.148 GT:AD:DP:GQ:PL 1/1:2,146:148:99:6512,367,0 2 234622412 . G C 5221.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;CNN_1D=-3.102;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.97;MQRankSum=-2.077;QD=32.75;ReadPosRankSum=-1.403;SOR=1.402 GT:AD:DP:GQ:PL 1/1:2,119:121:99:5235,283,0 2 234622420 . T C 5136.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;CNN_1D=-4.470;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.56;MQRankSum=-2.096;QD=24.64;ReadPosRankSum=-2.009;SOR=1.437 GT:AD:DP:GQ:PL 1/1:2,118:120:99:5150,274,0 2 234622429 . T C 5093.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.601;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.92;QD=28.31;SOR=1.189 GT:AD:DP:GQ:PL 1/1:0,111:111:99:5107,352,0 2 234627608 . T G 4607.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.968;CNN_1D=-1.024;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQRankSum=-0.194;QD=27.59;ReadPosRankSum=0.383;SOR=0.781 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4621,451,0 2 234627914 . T C 7384.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;CNN_1D=-5.293;DP=252;ExcessHet=3.0103;FS=1.704;MLEAC=2;MLEAF=1.00;MQ=59.66;MQRankSum=-0.449;QD=29.30;ReadPosRankSum=-0.232;SOR=0.541 GT:AD:DP:GQ:PL 1/1:5,247:252:99:7398,617,0 2 234627937 . T C 7172.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.229;CNN_1D=-4.493;DP=247;ExcessHet=3.0103;FS=3.135;MLEAC=2;MLEAF=1.00;MQ=59.63;MQRankSum=-0.207;QD=29.04;ReadPosRankSum=-0.070;SOR=0.328 GT:AD:DP:GQ:PL 1/1:1,246:247:99:7186,703,0 2 234628270 . G A 5871.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;CNN_1D=-0.786;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQRankSum=3.966;QD=27.56;ReadPosRankSum=1.643;SOR=0.962 GT:AD:DP:GQ:PL 1/1:6,207:213:99:5885,489,0 2 234637803 . T C 2954.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.058;CNN_1D=2.057;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.40;ReadPosRankSum=0.166;SOR=1.000 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2968,263,0 2 234637853 . G A 3927.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;CNN_1D=0.318;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQRankSum=-0.129;QD=28.25;ReadPosRankSum=0.334;SOR=0.801 GT:AD:DP:GQ:PL 1/1:4,135:139:99:3941,318,0 2 234638249 . A G 7195.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.200;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.40;QD=29.13;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7209,740,0 2 234638547 . G C 773.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.206;CNN_1D=-16.115;DP=247;ExcessHet=3.0103;FS=4.484;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-15.100;QD=3.13;ReadPosRankSum=3.660;SOR=0.405 GT:AD:DP:GQ:PL 0/1:213,34:247:99:781,0,10317 2 234638555 . T C 791.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.233;CNN_1D=-16.114;DP=242;ExcessHet=3.0103;FS=3.371;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-14.942;QD=3.27;ReadPosRankSum=2.210;SOR=0.446 GT:AD:DP:GQ:PL 0/1:208,34:242:99:799,0,10145 2 234638576 . A G 84.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.191;CNN_1D=-16.116;DP=220;ExcessHet=3.0103;FS=1.590;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-14.750;QD=0.38;ReadPosRankSum=-1.229;SOR=0.521 GT:AD:DP:GQ:PL 0/1:190,30:220:92:92,0,5106 2 234688036 . C A 877.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;CNN_1D=-2.029;DP=101;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=1.295;SOR=0.850 GT:AD:DP:GQ:PL 0/1:62,39:101:99:885,0,1503 2 234688360 . C T 1474.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;CNN_1D=-2.261;DP=118;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=0.255;SOR=0.818 GT:AD:DP:GQ:PL 0/1:52,66:118:99:1482,0,1121 2 234702459 . T C 2050.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;CNN_1D=-5.321;DP=177;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.966;SOR=0.551 GT:AD:DP:GQ:PL 0/1:89,88:177:99:2058,0,1994 2 234703136 . T C 1282.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;CNN_1D=-2.068;DP=116;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.486;SOR=0.622 GT:AD:DP:GQ:PL 0/1:56,60:116:99:1290,0,1220 2 234704318 . A G 2467.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;CNN_1D=-8.117;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=-1.332;SOR=0.675 GT:AD:DP:GQ:PL 0/1:122,110:232:99:2475,0,2657 2 234704690 . T C 2998.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.029;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.55;SOR=1.064 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3012,315,0 2 234707460 . G C 1619.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;CNN_1D=-4.395;DP=150;ExcessHet=3.0103;FS=2.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=1.685;SOR=0.932 GT:AD:DP:GQ:PL 0/1:77,73:150:99:1627,0,1739 2 234708428 . G A 1364.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;CNN_1D=-2.011;DP=120;ExcessHet=3.0103;FS=2.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=0.628;SOR=0.641 GT:AD:DP:GQ:PL 0/1:58,62:120:99:1372,0,1252 2 234708868 . G C 2369.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;CNN_1D=-5.238;DP=180;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=0.997;SOR=0.937 GT:AD:DP:GQ:PL 0/1:76,102:178:99:2377,0,1602 2 234710831 . G C 1393.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;CNN_1D=-0.848;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=0.683;SOR=0.719 GT:AD:DP:GQ:PL 0/1:43,61:104:99:1401,0,922 2 234713706 . T C 351.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;CNN_1D=0.287;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=1.074;SOR=0.620 GT:AD:DP:GQ:PL 0/1:33,19:52:99:359,0,768 2 234716426 . G A 1616.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;CNN_1D=-4.260;DP=157;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=1.389;SOR=0.934 GT:AD:DP:GQ:PL 0/1:83,73:156:99:1624,0,1761 2 234725502 . T C 2717.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.118;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.90;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2731,302,0 2 234727986 . C T 3930.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.483;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.68;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3944,426,0 2 234728078 . T C 3662.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.095;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.26;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3676,363,0 2 234750542 . G C 2021.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;CNN_1D=-5.422;DP=174;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=2.945;SOR=0.788 GT:AD:DP:GQ:PL 0/1:89,84:173:99:2029,0,2253 2 234750831 . T C 1119.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.424;CNN_1D=-1.269;DP=106;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-1.293;SOR=0.503 GT:AD:DP:GQ:PL 0/1:54,52:106:99:1127,0,1372 2 234752863 . C T 2003.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;CNN_1D=-5.917;DP=174;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=0.163;SOR=0.883 GT:AD:DP:GQ:PL 0/1:84,90:174:99:2011,0,1827 2 234758500 . G A 885.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;CNN_1D=-0.060;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-0.163;SOR=0.693 GT:AD:DP:GQ:PL 0/1:44,44:88:99:893,0,1007 2 234761225 . C T 815.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;CNN_1D=-3.311;DP=113;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=1.245;SOR=0.565 GT:AD:DP:GQ:PL 0/1:71,42:113:99:823,0,1570 2 234762480 . A T 2693.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.009;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2707,285,0 2 234967539 . T A 4878.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.323;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.20;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4892,518,0 2 235950187 . T C 1929.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;CNN_1D=-4.121;DP=155;ExcessHet=3.0103;FS=8.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=2.268;SOR=0.946 GT:AD:DP:GQ:PL 0/1:72,83:155:99:1937,0,1639 2 235951819 . A G 1773.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;CNN_1D=-2.449;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=1.746;SOR=0.678 GT:AD:DP:GQ:PL 0/1:57,76:133:99:1781,0,1297 2 236708166 . C T 1236.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;CNN_1D=-2.279;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=0.240;SOR=0.709 GT:AD:DP:GQ:PL 0/1:61,57:118:99:1244,0,1284 2 236761396 . C T 5737.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.897;CNN_1D=-3.363;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.12;ReadPosRankSum=1.583;SOR=0.840 GT:AD:DP:GQ:PL 1/1:2,202:204:99:5751,563,0 2 236957822 . G A 2802.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.768;CNN_1D=3.199;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.94;ReadPosRankSum=0.628;SOR=0.815 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2816,261,0 2 237032607 . T G 2248.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;CNN_1D=-3.943;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.148;SOR=0.673 GT:AD:DP:GQ:PL 0/1:66,102:168:99:2256,0,1387 2 237032703 . T C 1994.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;CNN_1D=-3.272;DP=147;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=-0.308;SOR=0.545 GT:AD:DP:GQ:PL 0/1:60,87:147:99:2002,0,1291 2 237489297 . C T 1519.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;CNN_1D=-3.882;DP=136;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-0.081;SOR=0.557 GT:AD:DP:GQ:PL 0/1:71,65:136:99:1527,0,1720 2 237489904 . C T 1523.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;CNN_1D=-2.356;DP=134;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=0.806;SOR=0.662 GT:AD:DP:GQ:PL 0/1:72,62:134:99:1531,0,1816 2 238243292 . G A 1926.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.175;CNN_1D=3.913;DP=71;ExcessHet=3.0103;FS=2.898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.51;ReadPosRankSum=1.111;SOR=0.201 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1940,130,0 2 238243464 . C G 3312.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.738;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.05;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3326,342,0 2 238244963 . A G 3482.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.914;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.26;SOR=1.198 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3496,357,0 2 238249630 . C T 4887.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.626;CNN_1D=0.046;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.58;ReadPosRankSum=0.861;SOR=0.242 GT:AD:DP:GQ:PL 1/1:1,170:171:99:4901,479,0 2 238258814 . C G 3592.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.128;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.51;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3606,378,0 2 238427194 . T C 1273.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;CNN_1D=-0.176;DP=89;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=-2.185;SOR=0.555 GT:AD:DP:GQ:PL 0/1:33,56:89:99:1281,0,727 2 238427223 . G A 1017.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;CNN_1D=-2.437;DP=118;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=0.541;SOR=0.655 GT:AD:DP:GQ:PL 0/1:69,49:118:99:1025,0,1536 2 238427251 . G A 1469.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;CNN_1D=-2.077;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=0.693;SOR=0.687 GT:AD:DP:GQ:PL 0/1:51,67:118:99:1477,0,1047 2 238434434 . C T 1065.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;CNN_1D=-1.336;DP=107;ExcessHet=3.0103;FS=2.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.489;SOR=0.466 GT:AD:DP:GQ:PL 0/1:59,48:107:99:1073,0,1450 2 238443226 . A G 856.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;CNN_1D=0.386;DP=77;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-1.153;SOR=0.461 GT:AD:DP:GQ:PL 0/1:37,40:77:99:864,0,833 2 238449007 . T C 1590.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;CNN_1D=0.578;DP=94;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=-0.612;SOR=0.827 GT:AD:DP:GQ:PL 0/1:52,42:94:99:1598,0,2529 2 238449023 . T C 1716.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;CNN_1D=-0.369;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=-0.393;SOR=0.739 GT:AD:DP:GQ:PL 0/1:57,48:105:99:1724,0,2639 2 238536392 . T G 537.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;CNN_1D=1.944;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.53;ReadPosRankSum=-0.955;SOR=0.602 GT:AD:DP:GQ:PL 0/1:13,24:37:99:545,0,283 2 238643907 . G A 2092.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.932;CNN_1D=3.161;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.17;ReadPosRankSum=2.035;SOR=0.832 GT:AD:DP:GQ:PL 1/1:2,75:77:99:2106,182,0 2 238668802 . A G 4299.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.085;CNN_1D=-2.138;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQRankSum=-0.300;QD=26.37;ReadPosRankSum=0.842;SOR=0.958 GT:AD:DP:GQ:PL 1/1:4,159:163:99:4313,363,0 2 238671328 . A G 4399.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.522;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.94;QD=29.13;SOR=1.041 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4413,452,0 2 238672703 . C G 5441.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.066;CNN_1D=-1.894;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.34;ReadPosRankSum=0.464;SOR=0.556 GT:AD:DP:GQ:PL 1/1:7,185:192:99:5455,386,0 2 238733016 . G A 1254.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;CNN_1D=-2.472;DP=120;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=-1.188;SOR=0.597 GT:AD:DP:GQ:PL 0/1:59,60:119:99:1262,0,1316 2 238990388 . G A 838.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;CNN_1D=-2.001;DP=103;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.977;SOR=0.760 GT:AD:DP:GQ:PL 0/1:61,42:103:99:846,0,1465 2 239006879 . C T 1321.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;CNN_1D=-0.783;DP=100;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=1.146;SOR=0.882 GT:AD:DP:GQ:PL 0/1:44,56:100:99:1329,0,942 2 239009336 . G A 589.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;CNN_1D=1.215;DP=50;ExcessHet=3.0103;FS=3.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.233;SOR=0.330 GT:AD:DP:GQ:PL 0/1:24,26:50:99:597,0,595 2 239010577 . G C 284.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;CNN_1D=0.592;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.848;SOR=0.492 GT:AD:DP:GQ:PL 0/1:32,14:46:99:292,0,814 2 239010719 . T C 3168.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.545;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.04;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3182,339,0 2 239016539 . C G 6192.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-4.030;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.53;SOR=0.740 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6206,651,0 2 239033901 . T C 1854.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;CNN_1D=-4.090;DP=167;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.322;SOR=0.591 GT:AD:DP:GQ:PL 0/1:86,81:167:99:1862,0,2060 2 239039057 . A G 1318.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;CNN_1D=3.048;DP=67;ExcessHet=3.0103;FS=3.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.68;ReadPosRankSum=1.633;SOR=0.697 GT:AD:DP:GQ:PL 0/1:32,35:67:99:1326,0,1411 2 239039075 . G T 1346.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;CNN_1D=3.372;DP=62;ExcessHet=3.0103;FS=6.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.72;ReadPosRankSum=0.618;SOR=0.564 GT:AD:DP:GQ:PL 0/1:27,35:62:99:1354,0,1258 2 239039183 . G A 1140.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;CNN_1D=0.408;DP=87;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=-0.260;SOR=0.476 GT:AD:DP:GQ:PL 0/1:40,47:87:99:1148,0,910 2 239039637 . T C 2198.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.082;CNN_1D=3.040;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.48;ReadPosRankSum=-0.751;SOR=0.920 GT:AD:DP:GQ:PL 1/1:4,76:80:99:2212,116,0 2 239039779 . G A 1254.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;CNN_1D=-3.110;DP=133;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=1.065;SOR=0.523 GT:AD:DP:GQ:PL 0/1:73,60:133:99:1262,0,1810 2 239039841 . A G 1778.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;CNN_1D=-2.491;DP=139;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=0.929;SOR=0.498 GT:AD:DP:GQ:PL 0/1:60,79:139:99:1786,0,1337 2 239039896 . G C 3801.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.602;CNN_1D=1.495;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.16;ReadPosRankSum=0.321;SOR=0.261 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3815,366,0 2 239040187 . T C 2359.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.868;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.76;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2373,216,0 2 239040218 . G A 743.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;CNN_1D=0.060;DP=69;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.766;SOR=1.044 GT:AD:DP:GQ:PL 0/1:38,31:69:99:751,0,922 2 239040343 . G A 665.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.404;CNN_1D=1.941;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=1.480;SOR=0.754 GT:AD:DP:GQ:PL 0/1:25,28:53:99:673,0,681 2 239049540 . G A 1169.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;CNN_1D=-0.539;DP=97;ExcessHet=3.0103;FS=3.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=0.487;SOR=1.023 GT:AD:DP:GQ:PL 0/1:47,50:97:99:1177,0,1023 2 239050033 . C T 1354.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;CNN_1D=-3.290;DP=117;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=-0.033;SOR=0.796 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1362,0,1362 2 239050142 . G A 996.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;CNN_1D=0.775;DP=82;ExcessHet=3.0103;FS=2.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=0.798;SOR=0.428 GT:AD:DP:GQ:PL 0/1:40,42:82:99:1004,0,1001 2 239051550 . T C 3766.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.127;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.10;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3780,402,0 2 239059484 . T C 3613.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.899;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.01;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3627,387,0 2 239067746 . G C 282.02 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.947;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.20;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,10:10:30:296,30,0 2 239082166 . G GC 3058.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.658;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.42;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,87:87:99:3072,265,0 2 239148535 . G C 815.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.718;CNN_1D=1.942;DP=49;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=-0.320;SOR=0.368 GT:AD:DP:GQ:PL 0/1:16,33:49:99:823,0,404 2 239165636 . C T 1634.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;CNN_1D=-4.832;DP=141;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-0.712;SOR=0.729 GT:AD:DP:GQ:PL 0/1:70,71:141:99:1642,0,1456 2 239229372 . C A 2030.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.860;CNN_1D=2.948;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.71;ReadPosRankSum=-0.503;SOR=0.927 GT:AD:DP:GQ:PL 1/1:2,74:76:99:2044,178,0 2 239237388 . G A 1338.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;CNN_1D=-4.239;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=0.174;SOR=0.652 GT:AD:DP:GQ:PL 0/1:79,61:140:99:1346,0,1717 2 239237953 . G T 1424.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.058;CNN_1D=-1.834;DP=121;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=0.403;SOR=0.624 GT:AD:DP:GQ:PL 0/1:57,64:121:99:1432,0,1446 2 239353001 . C T 978.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;CNN_1D=-2.186;DP=108;ExcessHet=3.0103;FS=3.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.225;SOR=0.423 GT:AD:DP:GQ:PL 0/1:64,44:108:99:986,0,1560 2 240029736 . T C 1653.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;CNN_1D=-3.716;DP=142;ExcessHet=3.0103;FS=2.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-1.127;SOR=0.599 GT:AD:DP:GQ:PL 0/1:68,74:142:99:1661,0,1432 2 240066417 . A G 2494.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.208;CNN_1D=3.056;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.71;ReadPosRankSum=1.386;SOR=0.341 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2508,232,0 2 240961728 . T C 1004.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;CNN_1D=0.147;DP=87;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=0.216;SOR=0.858 GT:AD:DP:GQ:PL 0/1:40,45:85:99:1012,0,921 2 240964714 . G C 632.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;CNN_1D=0.654;DP=71;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.718;SOR=0.569 GT:AD:DP:GQ:PL 0/1:43,28:71:99:640,0,1113 2 240981262 . A C 3879.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.383;CNN_1D=2.138;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.28;ReadPosRankSum=-0.397;SOR=0.479 GT:AD:DP:GQ:PL 1/1:2,122:124:99:3893,295,0 2 240981375 . T A 10599.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.266;CNN_1D=-13.814;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQRankSum=-0.075;QD=26.30;ReadPosRankSum=0.539;SOR=1.210 GT:AD:DP:GQ:PL 1/1:2,401:403:99:10613,1114,0 2 240981487 . A G 1882.03 basic_snp_filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.763;CNN_1D=-0.690;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQRankSum=-1.430;QD=32.36;ReadPosRankSum=0.154;SOR=1.445 GT:AD:DP:GQ:PL 1/1:1,44:45:65:1896,65,0 2 240981515 . A G 4483.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.691;CNN_1D=-1.609;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQRankSum=-0.908;QD=25.94;ReadPosRankSum=1.735;SOR=1.061 GT:AD:DP:GQ:PL 1/1:1,103:104:99:4497,197,0 2 240981543 . A G 8069.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.650;CNN_1D=-5.008;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQRankSum=-0.645;QD=23.76;ReadPosRankSum=1.734;SOR=0.503 GT:AD:DP:GQ:PL 1/1:1,189:190:99:8083,456,0 2 240981548 . G C 10630.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.716;CNN_1D=-2.581;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQRankSum=-0.645;QD=34.80;ReadPosRankSum=1.734;SOR=0.503 GT:AD:DP:GQ:PL 1/1:1,189:190:99:10644,690,0 2 240981571 . A G 9878.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.814;CNN_1D=-6.846;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQRankSum=-0.533;QD=28.30;ReadPosRankSum=-0.050;SOR=0.402 GT:AD:DP:GQ:PL 1/1:1,241:242:99:9892,736,0 2 240984789 . C T 2218.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;CNN_1D=-5.544;DP=178;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-1.182;SOR=0.737 GT:AD:DP:GQ:PL 0/1:81,97:178:99:2226,0,1936 2 240985099 . G A 1301.03 basic_snp_filter AC=2;AF=1.00;AN=2;CNN_1D=0.696;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=34.51;QD=33.36;SOR=1.552 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1315,117,0 2 240985160 . G A 662.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;CNN_1D=-2.708;DP=52;ExcessHet=3.0103;FS=10.128;MLEAC=1;MLEAF=0.500;MQ=33.93;MQRankSum=0.051;QD=12.74;ReadPosRankSum=-0.843;SOR=0.282 GT:AD:DP:GQ:PL 0/1:25,27:52:99:670,0,618 2 240985347 . G A 3394.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.302;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.42;QD=30.30;SOR=0.970 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3408,335,0 2 241066280 . C T 2619.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;CNN_1D=-7.532;DP=209;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=-2.630;SOR=0.879 GT:AD:DP:GQ:PL 0/1:88,119:207:99:2627,0,1952 2 241066325 . A C 1690.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;CNN_1D=-5.087;DP=154;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=0.255;SOR=0.957 GT:AD:DP:GQ:PL 0/1:79,75:154:99:1698,0,1896 2 241404317 . C T 878.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;CNN_1D=-2.555;DP=112;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=1.533;SOR=0.828 GT:AD:DP:GQ:PL 0/1:70,42:112:99:886,0,1715 2 241404499 . C T 1405.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;CNN_1D=-0.722;DP=108;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=0.443;SOR=0.506 GT:AD:DP:GQ:PL 0/1:51,57:108:99:1413,0,1175 2 241405528 . A G 2647.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.838;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.09;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2661,273,0 2 241451351 . G A 1319.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;CNN_1D=-1.321;DP=109;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=0.173;SOR=0.616 GT:AD:DP:GQ:PL 0/1:48,60:108:99:1327,0,938 2 241452212 . T C 1178.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.091;CNN_1D=-1.739;DP=98;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-1.358;SOR=0.950 GT:AD:DP:GQ:PL 0/1:48,50:98:99:1186,0,1000 2 241463595 . T C 2437.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.105;CNN_1D=-8.209;DP=228;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-0.601;SOR=0.525 GT:AD:DP:GQ:PL 0/1:123,105:228:99:2445,0,2779 2 241465860 . T A 751.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;CNN_1D=1.045;DP=65;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=-1.093;SOR=0.463 GT:AD:DP:GQ:PL 0/1:37,28:65:99:759,0,987 2 241537421 . G A 2666.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.753;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.67;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2680,279,0 2 241538074 . A G 3236.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.779;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.90;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3250,347,0 2 241558397 . G A 1657.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;CNN_1D=-3.455;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-0.033;SOR=0.737 GT:AD:DP:GQ:PL 0/1:70,76:146:99:1665,0,1461 2 241570249 . A C 1048.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;CNN_1D=-4.015;DP=126;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-1.966;SOR=0.776 GT:AD:DP:GQ:PL 0/1:76,50:126:99:1056,0,1751 2 241621866 . C T 4065.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.027;CNN_1D=-0.913;DP=136;ExcessHet=3.0103;FS=3.411;MLEAC=2;MLEAF=1.00;MQ=54.24;MQRankSum=-0.755;QD=29.89;ReadPosRankSum=-1.299;SOR=0.538 GT:AD:DP:GQ:PL 1/1:1,135:136:99:4079,374,0 2 241622034 . G C 2606.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;CNN_1D=-5.855;DP=223;ExcessHet=3.0103;FS=9.641;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=2.981;QD=11.69;ReadPosRankSum=-0.471;SOR=0.686 GT:AD:DP:GQ:PL 0/1:118,105:223:99:2614,0,3019 2 241622209 . T C 3752.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.715;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.20;QD=29.09;SOR=1.434 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3766,387,0 2 241680802 . G A 2038.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.243;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.31;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2052,216,0 2 241813453 . G A 1671.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;CNN_1D=-4.351;DP=160;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=0.581;SOR=0.722 GT:AD:DP:GQ:PL 0/1:81,78:159:99:1679,0,1805 2 241827798 . T C 831.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;CNN_1D=-0.121;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.828;SOR=0.813 GT:AD:DP:GQ:PL 0/1:35,35:70:99:839,0,824 2 241828012 . T C 1867.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;CNN_1D=-2.517;DP=131;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=-0.839;SOR=0.562 GT:AD:DP:GQ:PL 0/1:50,81:131:99:1875,0,1101 2 241828034 . A G 4230.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.347;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.08;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,112:112:99:4244,343,0 2 241830969 . G A 1215.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;CNN_1D=-0.508;DP=95;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=-1.319;SOR=0.941 GT:AD:DP:GQ:PL 0/1:42,53:95:99:1223,0,949 2 241831005 . C T 1686.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.202;CNN_1D=-1.101;DP=113;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-0.857;SOR=0.576 GT:AD:DP:GQ:PL 0/1:41,72:113:99:1694,0,968 2 241831296 . C G 1241.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;CNN_1D=-3.711;DP=120;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=0.418;SOR=0.608 GT:AD:DP:GQ:PL 0/1:61,58:119:99:1249,0,1325 2 241834907 . C T 966.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;CNN_1D=2.036;DP=63;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-0.211;SOR=0.534 GT:AD:DP:GQ:PL 0/1:25,38:63:99:974,0,547 2 241834944 . T C 1378.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;CNN_1D=0.836;DP=91;ExcessHet=3.0103;FS=2.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=1.896;SOR=1.094 GT:AD:DP:GQ:PL 0/1:40,51:91:99:1386,0,912 2 241835379 . G A 1085.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;CNN_1D=-0.584;DP=90;ExcessHet=3.0103;FS=2.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-0.920;SOR=0.390 GT:AD:DP:GQ:PL 0/1:45,45:90:99:1093,0,1167 2 241979550 . T C 1972.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.677;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.88;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1986,198,0 2 241991875 . G A 4146.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;CNN_1D=-0.900;DP=158;ExcessHet=3.0103;FS=2.305;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.24;ReadPosRankSum=1.032;SOR=0.688 GT:AD:DP:GQ:PL 1/1:3,155:158:99:4160,398,0 2 242003487 . C T 3516.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.928;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.90;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3530,377,0 2 242004866 . A G 3890.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.954;CNN_1D=0.021;DP=151;ExcessHet=3.0103;FS=12.815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=1.431;SOR=0.273 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3904,302,0 2 242011084 . T C 3424.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.449;CNN_1D=2.301;DP=119;ExcessHet=3.0103;FS=3.044;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.77;ReadPosRankSum=0.455;SOR=0.109 GT:AD:DP:GQ:PL 1/1:2,117:119:99:3438,282,0 2 242021742 . G T 1931.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;CNN_1D=-4.434;DP=171;ExcessHet=3.0103;FS=2.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=0.853;SOR=0.734 GT:AD:DP:GQ:PL 0/1:84,87:171:99:1939,0,1871 2 242036797 . A G 1150.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;CNN_1D=-2.108;DP=115;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=0.126;SOR=0.560 GT:AD:DP:GQ:PL 0/1:60,55:115:99:1158,0,1416 2 242046785 . A C 1639.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;CNN_1D=-2.634;DP=125;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=1.224;SOR=0.935 GT:AD:DP:GQ:PL 0/1:53,72:125:99:1647,0,1153 2 242051777 . G A 1622.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;CNN_1D=-1.433;DP=122;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=0.000;SOR=0.557 GT:AD:DP:GQ:PL 0/1:55,67:122:99:1630,0,1125 2 242054403 . G A 1101.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.099;CNN_1D=-0.715;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-0.393;SOR=0.693 GT:AD:DP:GQ:PL 0/1:47,47:94:99:1109,0,1014 2 242062162 . C T 730.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;CNN_1D=-1.080;DP=73;ExcessHet=3.0103;FS=3.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.561;SOR=1.140 GT:AD:DP:GQ:PL 0/1:43,30:73:99:738,0,994 2 242066314 . T C 1913.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;CNN_1D=-4.620;DP=157;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-0.957;SOR=0.573 GT:AD:DP:GQ:PL 0/1:77,80:157:99:1921,0,1851 2 242072280 . G A 911.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862;CNN_1D=0.548;DP=77;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=1.279;SOR=0.541 GT:AD:DP:GQ:PL 0/1:38,39:77:99:919,0,985 2 242077496 . C T 1661.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.567;CNN_1D=-2.781;DP=128;ExcessHet=3.0103;FS=8.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=1.304;SOR=1.345 GT:AD:DP:GQ:PL 0/1:60,68:128:99:1669,0,1263 2 242082262 . T C 1174.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;CNN_1D=-1.329;DP=93;ExcessHet=3.0103;FS=7.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=-2.063;SOR=1.425 GT:AD:DP:GQ:PL 0/1:49,44:93:99:1182,0,1193 2 242141719 . C T 1347.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.619;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.49;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1361,147,0 2 242176188 . G C 1088.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;CNN_1D=-2.722;DP=119;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=1.950;SOR=0.531 GT:AD:DP:GQ:PL 0/1:69,50:119:99:1096,0,1718 2 242194583 . T C 424.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;CNN_1D=0.033;DP=58;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=-0.697;SOR=0.719 GT:AD:DP:GQ:PL 0/1:36,22:58:99:432,0,821 2 242203916 . A C 2495.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.197;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.99;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2509,287,0 2 242350466 . A G 309.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;CNN_1D=2.820;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=1.258;SOR=0.610 GT:AD:DP:GQ:PL 0/1:21,16:37:99:317,0,462 2 242572846 . A G 1533.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;CNN_1D=-2.954;DP=124;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-1.709;SOR=0.826 GT:AD:DP:GQ:PL 0/1:59,65:124:99:1541,0,1446 2 242573211 . T C 3451.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.367;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.00;SOR=0.710 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3465,357,0 2 242610738 . T C 1526.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;CNN_1D=-3.976;DP=146;ExcessHet=3.0103;FS=4.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-0.772;SOR=1.059 GT:AD:DP:GQ:PL 0/1:81,65:146:99:1534,0,1942 2 242610773 . T A 4849.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.142;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.86;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4863,504,0 2 242684115 . T C 1887.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;CNN_1D=-2.305;DP=135;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=0.090;SOR=0.958 GT:AD:DP:GQ:PL 0/1:57,77:134:99:1895,0,1230 2 242690675 . G A 784.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;CNN_1D=-0.767;DP=83;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-2.226;SOR=0.761 GT:AD:DP:GQ:PL 0/1:45,38:83:99:792,0,987 2 242757411 . C T 2630.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;CNN_1D=-6.697;DP=202;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=1.177;SOR=0.759 GT:AD:DP:GQ:PL 0/1:89,113:202:99:2638,0,2021 2 242758179 . C T 2215.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;CNN_1D=-5.369;DP=184;ExcessHet=3.0103;FS=3.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-0.479;SOR=0.475 GT:AD:DP:GQ:PL 0/1:94,90:184:99:2223,0,2277 2 242758203 . T C 6228.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.058;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.45;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6242,594,0 2 242758326 . G A 5488.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.634;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.73;SOR=1.041 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5502,570,0 2 242793273 . A G 5564.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.755;CNN_1D=-2.791;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.41;ReadPosRankSum=2.003;SOR=0.787 GT:AD:DP:GQ:PL 1/1:4,199:203:99:5578,485,0 2 242814009 . G A 2981.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.254;CNN_1D=2.651;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.11;ReadPosRankSum=-1.132;SOR=0.892 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2995,248,0 3 391100 . A G 5055.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.382;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.89;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5069,524,0 3 439963 . A G 2426.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.798;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.26;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2440,266,0 3 440028 . T C 2178.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.988;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.24;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2192,248,0 3 1262474 . T C 656.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;CNN_1D=-1.320;DP=87;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=1.081;SOR=0.799 GT:AD:DP:GQ:PL 0/1:54,33:87:99:664,0,1328 3 1339680 . GGTTTTT G 368.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.785;CNN_1D=-0.058;DP=33;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=0.639;SOR=1.085 GT:AD:DP:GQ:PL 0/1:15,10:25:99:376,0,1007 3 1369278 . G A 315.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;CNN_1D=2.549;DP=34;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=1.506;SOR=0.757 GT:AD:DP:GQ:PL 0/1:20,14:34:99:323,0,466 3 1424718 . G A 1155.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.131;CNN_1D=-1.192;DP=110;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=0.383;SOR=0.472 GT:AD:DP:GQ:PL 0/1:58,52:110:99:1163,0,1561 3 3067850 . A G 2108.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;CNN_1D=0.605;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.52;ReadPosRankSum=1.131;SOR=0.765 GT:AD:DP:GQ:PL 0/1:53,55:108:99:2116,0,2514 3 3067853 . G A 2102.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;CNN_1D=0.416;DP=111;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=1.658;SOR=0.804 GT:AD:DP:GQ:PL 0/1:56,55:111:99:2110,0,2558 3 3076443 . A G 997.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527;CNN_1D=-1.979;DP=106;ExcessHet=3.0103;FS=2.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-1.395;SOR=0.672 GT:AD:DP:GQ:PL 0/1:55,51:106:99:1005,0,1258 3 3081825 . T C 1170.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;CNN_1D=-1.467;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.370;SOR=0.627 GT:AD:DP:GQ:PL 0/1:56,56:112:99:1178,0,1292 3 3084653 . C T 683.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;CNN_1D=0.109;DP=59;ExcessHet=3.0103;FS=10.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.878;SOR=2.147 GT:AD:DP:GQ:PL 0/1:33,26:59:99:691,0,779 3 3139957 . T C 1234.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;CNN_1D=-1.632;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-0.268;SOR=0.637 GT:AD:DP:GQ:PL 0/1:66,52:118:99:1242,0,1476 3 3170792 . C T 1786.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.418;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.66;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1800,201,0 3 3189279 . A G 2459.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.074;CNN_1D=2.740;DP=88;ExcessHet=3.0103;FS=3.647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.94;ReadPosRankSum=0.020;SOR=0.718 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2473,226,0 3 3215954 . A G 1680.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.210;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.00;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1694,167,0 3 3886580 . A G 3505.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.306;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.75;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3519,341,0 3 3887876 . T C 5489.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.890;CNN_1D=-1.968;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.59;ReadPosRankSum=0.672;SOR=1.002 GT:AD:DP:GQ:PL 1/1:2,190:192:99:5503,500,0 3 4403818 . T C 1272.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;CNN_1D=1.439;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.33;ReadPosRankSum=1.853;SOR=0.793 GT:AD:DP:GQ:PL 0/1:49,34:83:99:1280,0,2309 3 4403837 . A G 1202.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.249;CNN_1D=-2.242;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-1.181;SOR=0.699 GT:AD:DP:GQ:PL 0/1:60,51:111:99:1210,0,1312 3 4712413 . G A 791.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;CNN_1D=0.118;DP=78;ExcessHet=3.0103;FS=1.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-1.038;SOR=0.488 GT:AD:DP:GQ:PL 0/1:42,36:78:99:799,0,1131 3 4767262 . T C 2380.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.767;CNN_1D=3.089;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=1.598;SOR=0.232 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2394,232,0 3 4817057 . T C 3300.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.054;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.27;SOR=0.850 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3314,363,0 3 4842231 . C T 1546.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;CNN_1D=-2.832;DP=132;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=2.288;SOR=0.804 GT:AD:DP:GQ:PL 0/1:58,74:132:99:1554,0,1255 3 4856180 . T C 2267.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.463;CNN_1D=2.627;DP=86;ExcessHet=3.0103;FS=3.324;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.36;ReadPosRankSum=0.000;SOR=0.489 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2281,219,0 3 4856234 . G A 404.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;CNN_1D=0.086;DP=47;ExcessHet=3.0103;FS=4.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.182;SOR=1.431 GT:AD:DP:GQ:PL 0/1:29,17:46:99:412,0,717 3 5241309 . C A 2103.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.070;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.67;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2117,228,0 3 6903297 . C T 6325.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.592;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.88;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6339,656,0 3 6903601 . A G 2497.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.208;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.21;SOR=1.236 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2511,240,0 3 8590313 . T C 1298.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;CNN_1D=-4.232;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=0.057;SOR=0.695 GT:AD:DP:GQ:PL 0/1:87,61:148:99:1306,0,2035 3 8591575 . G A 416.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;CNN_1D=-0.612;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=-0.946;SOR=0.693 GT:AD:DP:GQ:PL 0/1:36,22:58:99:424,0,761 3 8675539 . G A 1388.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;CNN_1D=-3.486;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.095;SOR=0.722 GT:AD:DP:GQ:PL 0/1:67,68:135:99:1396,0,1435 3 8677501 . G A 1426.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;CNN_1D=-1.715;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=1.840;SOR=0.715 GT:AD:DP:GQ:PL 0/1:50,65:115:99:1434,0,1025 3 8775589 . C T 1230.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;CNN_1D=-3.715;DP=134;ExcessHet=3.0103;FS=3.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.169;SOR=0.807 GT:AD:DP:GQ:PL 0/1:78,55:133:99:1238,0,1782 3 8809703 . G A 991.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;CNN_1D=2.312;DP=65;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.26;ReadPosRankSum=-1.126;SOR=0.479 GT:AD:DP:GQ:PL 0/1:25,40:65:99:999,0,560 3 8955389 . C T 2218.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.838;CNN_1D=2.694;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.72;ReadPosRankSum=0.223;SOR=0.995 GT:AD:DP:GQ:PL 1/1:2,81:83:99:2232,199,0 3 9005078 . C T 1809.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.908;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.18;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1823,186,0 3 9406836 . T C 1854.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.233;CNN_1D=-5.778;DP=176;ExcessHet=3.0103;FS=3.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=1.500;SOR=0.987 GT:AD:DP:GQ:PL 0/1:92,83:175:99:1862,0,1955 3 9422210 . T C 752.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;CNN_1D=0.484;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=1.584;SOR=0.701 GT:AD:DP:GQ:PL 0/1:37,35:72:99:760,0,821 3 9425911 . G A 635.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;CNN_1D=1.145;DP=64;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=2.137;SOR=0.826 GT:AD:DP:GQ:PL 0/1:33,31:64:99:643,0,765 3 9425944 . G C 992.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;CNN_1D=0.128;DP=88;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=-0.858;SOR=0.599 GT:AD:DP:GQ:PL 0/1:41,47:88:99:1000,0,914 3 9426224 . G A 1468.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.464;CNN_1D=-2.748;DP=124;ExcessHet=3.0103;FS=3.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=1.240;SOR=1.018 GT:AD:DP:GQ:PL 0/1:64,60:124:99:1476,0,1398 3 9807766 . C G 1036.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;CNN_1D=-1.463;DP=83;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-1.045;SOR=0.878 GT:AD:DP:GQ:PL 0/1:44,39:83:99:1044,0,1085 3 9841989 . A G 1067.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;CNN_1D=-0.530;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=0.115;SOR=0.720 GT:AD:DP:GQ:PL 0/1:43,48:91:99:1075,0,955 3 9852059 . C CGAT 4107.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.758;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.22;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,92:92:99:4121,279,0 3 9867625 . C T 3115.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.330;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.32;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3129,330,0 3 9870857 . G A 1720.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;CNN_1D=-3.765;DP=155;ExcessHet=3.0103;FS=3.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=1.274;SOR=0.743 GT:AD:DP:GQ:PL 0/1:78,76:154:99:1728,0,1800 3 9871030 . T G 2562.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.092;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.14;SOR=1.233 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2576,255,0 3 9874914 . C T 419.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;CNN_1D=1.647;DP=38;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=0.074;SOR=0.481 GT:AD:DP:GQ:PL 0/1:22,16:38:99:427,0,495 3 9876919 . G A 1416.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;CNN_1D=-2.396;DP=132;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=0.363;SOR=0.833 GT:AD:DP:GQ:PL 0/1:71,61:132:99:1424,0,1854 3 9876987 . G A 1399.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.996;CNN_1D=-4.079;DP=131;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-0.101;SOR=0.854 GT:AD:DP:GQ:PL 0/1:66,65:131:99:1407,0,1642 3 9934605 . T C 2042.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.628;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.42;SOR=1.539 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2056,195,0 3 9952706 . A G 4178.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.895;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.42;SOR=1.017 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4192,441,0 3 9956279 . G A 5133.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.440;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.19;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5147,510,0 3 9957455 . C T 1956.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.620;CNN_1D=2.565;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.74;ReadPosRankSum=-0.373;SOR=0.864 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1970,177,0 3 9959713 . C T 1426.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;CNN_1D=-1.841;DP=114;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-1.539;SOR=0.716 GT:AD:DP:GQ:PL 0/1:54,60:114:99:1434,0,1187 3 9960070 . C T 5840.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.523;CNN_1D=-5.086;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.16;ReadPosRankSum=-0.786;SOR=0.846 GT:AD:DP:GQ:PL 1/1:6,209:215:99:5854,473,0 3 9970031 . A G 3506.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.002;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.27;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3520,372,0 3 9975247 . C G 2241.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.859;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.56;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2255,213,0 3 9976159 . A G 3352.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.622;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.93;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3366,360,0 3 9991388 . G C 6167.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.601;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.08;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6181,615,0 3 10018739 . TA T 181.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;CNN_1D=-0.884;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.171;SOR=0.656 GT:AD:DP:GQ:PL 0/1:44,15:59:99:189,0,803 3 10088266 . G T 268.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;CNN_1D=-4.864;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-2.458;QD=2.92;ReadPosRankSum=2.257;SOR=0.600 GT:AD:DP:GQ:PL 0/1:71,21:92:99:276,0,1806 3 10088299 . C T 1144.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;CNN_1D=-7.700;DP=146;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-3.243;QD=7.84;ReadPosRankSum=0.009;SOR=0.558 GT:AD:DP:GQ:PL 0/1:110,36:146:99:1152,0,4532 3 10088308 . T C 1169.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;CNN_1D=-7.874;DP=155;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=53.87;MQRankSum=-3.112;QD=7.55;ReadPosRankSum=-0.485;SOR=0.551 GT:AD:DP:GQ:PL 0/1:117,38:155:99:1177,0,4689 3 10088343 . A G 683.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;CNN_1D=-12.098;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.50;MQRankSum=-3.294;QD=3.60;ReadPosRankSum=-0.279;SOR=0.642 GT:AD:DP:GQ:PL 0/1:144,46:190:99:691,0,3369 3 10088404 . C T 913.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;CNN_1D=-9.749;DP=126;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=46.84;MQRankSum=-4.900;QD=7.25;ReadPosRankSum=0.052;SOR=0.726 GT:AD:DP:GQ:PL 0/1:96,30:126:99:921,0,3884 3 10088407 . AG A 910.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;CNN_1D=-10.730;DP=120;ExcessHet=3.0103;FS=2.879;MLEAC=1;MLEAF=0.500;MQ=46.33;MQRankSum=-5.233;QD=7.59;ReadPosRankSum=0.585;SOR=0.844 GT:AD:DP:GQ:PL 0/1:93,27:120:99:918,0,3936 3 10088409 . TAAG T 840.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;CNN_1D=-10.244;DP=119;ExcessHet=3.0103;FS=2.901;MLEAC=1;MLEAF=0.500;MQ=46.43;MQRankSum=-5.200;QD=7.06;ReadPosRankSum=0.565;SOR=0.828 GT:AD:DP:GQ:PL 0/1:92,27:119:99:848,0,3902 3 10089723 . G A 732.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;CNN_1D=-4.133;DP=112;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-2.051;QD=6.54;ReadPosRankSum=-1.770;SOR=0.552 GT:AD:DP:GQ:PL 0/1:76,36:112:99:740,0,1794 3 10089738 . A G 726.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;CNN_1D=-3.779;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-2.462;QD=7.34;ReadPosRankSum=-1.971;SOR=0.627 GT:AD:DP:GQ:PL 0/1:66,33:99:99:734,0,1534 3 10142949 . C T 792.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;CNN_1D=-1.113;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=0.712;SOR=0.656 GT:AD:DP:GQ:PL 0/1:51,40:91:99:800,0,1227 3 10264480 . C G 1055.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;CNN_1D=-2.298;DP=117;ExcessHet=3.0103;FS=4.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-0.868;SOR=0.366 GT:AD:DP:GQ:PL 0/1:69,48:117:99:1063,0,1767 3 10276163 . T A 2952.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.025;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.82;SOR=1.449 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2966,296,0 3 10276185 . C G 1382.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;CNN_1D=-3.768;DP=129;ExcessHet=3.0103;FS=4.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-0.721;SOR=1.091 GT:AD:DP:GQ:PL 0/1:72,57:129:99:1390,0,1732 3 10302045 . C T 3511.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;CNN_1D=-2.702;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.66;ReadPosRankSum=-0.455;SOR=0.691 GT:AD:DP:GQ:PL 0/1:79,91:170:99:3519,0,3940 3 10302056 . A G 3628.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;CNN_1D=-3.520;DP=180;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.16;ReadPosRankSum=-1.663;SOR=0.817 GT:AD:DP:GQ:PL 0/1:84,96:180:99:3636,0,4018 3 10302172 . G A 5116.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.478;CNN_1D=-0.984;DP=177;ExcessHet=3.0103;FS=3.032;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.90;ReadPosRankSum=0.305;SOR=0.112 GT:AD:DP:GQ:PL 1/1:2,175:177:99:5130,455,0 3 10379923 . C T 3867.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.148;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.64;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3881,405,0 3 10387059 . C A 2696.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.769;CNN_1D=1.675;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.08;ReadPosRankSum=-0.693;SOR=1.143 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2710,214,0 3 10413715 . G A 1148.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;CNN_1D=-3.484;DP=130;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.303;SOR=0.881 GT:AD:DP:GQ:PL 0/1:71,58:129:99:1156,0,1711 3 10443827 . G C 1953.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;CNN_1D=-3.342;DP=150;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=1.283;SOR=0.540 GT:AD:DP:GQ:PL 0/1:72,78:150:99:1961,0,1670 3 10885920 . T C 960.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;CNN_1D=-3.565;DP=117;ExcessHet=3.0103;FS=5.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-0.307;SOR=1.024 GT:AD:DP:GQ:PL 0/1:73,44:117:99:968,0,1742 3 10967739 . T C 1214.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;CNN_1D=-0.099;DP=92;ExcessHet=3.0103;FS=5.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=-1.710;SOR=1.009 GT:AD:DP:GQ:PL 0/1:41,51:92:99:1222,0,889 3 10975745 . C T 833.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;CNN_1D=1.476;DP=68;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=0.840;SOR=0.473 GT:AD:DP:GQ:PL 0/1:30,38:68:99:841,0,604 3 11596302 . T C 4227.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.874;CNN_1D=-0.351;DP=153;ExcessHet=3.0103;FS=3.039;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.63;ReadPosRankSum=-0.645;SOR=0.265 GT:AD:DP:GQ:PL 1/1:1,152:153:99:4241,420,0 3 11643465 . T C 943.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;CNN_1D=-0.234;DP=87;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-0.196;SOR=0.882 GT:AD:DP:GQ:PL 0/1:46,41:87:99:951,0,966 3 11880760 . T C 1238.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;CNN_1D=-2.513;DP=118;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-2.008;SOR=0.765 GT:AD:DP:GQ:PL 0/1:62,56:118:99:1246,0,1311 3 11887991 . C G 3215.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;CNN_1D=2.304;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.45;ReadPosRankSum=1.775;SOR=0.786 GT:AD:DP:GQ:PL 1/1:2,111:113:99:3229,290,0 3 12046076 . T C 2225.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.562;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.49;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2239,251,0 3 12046124 . A G 2097.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.479;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.93;SOR=1.659 GT:AD:DP:GQ:PL 1/1:0,47:47:99:2111,144,0 3 12046125 . G C 2097.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.025;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.31;SOR=1.714 GT:AD:DP:GQ:PL 1/1:0,45:45:99:2111,144,0 3 12046131 . A C 1831.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.227;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.99;SOR=1.666 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1845,123,0 3 12046148 . C T 1651.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.453;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.37;SOR=1.739 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1665,111,0 3 12046168 . A C 1238.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.704;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.40;SOR=1.688 GT:AD:DP:GQ:PL 1/1:0,29:29:87:1252,87,0 3 12046196 . A C 645.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.855;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.55;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,16:16:48:659,48,0 3 12046207 . C G 701.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.830;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.76;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,13:13:48:715,48,0 3 12046215 . G C 751.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.050;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.59;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,15:15:51:765,51,0 3 12046222 . A C 841.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.805;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.18;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,19:19:57:855,57,0 3 12046235 . GTAAGA G 976.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.951;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.61;SOR=2.737 GT:AD:DP:GQ:PL 1/1:0,22:22:66:990,66,0 3 12046241 . CGCGCCGA C 976.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.199;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.09;SOR=2.737 GT:AD:DP:GQ:PL 1/1:0,22:22:66:990,66,0 3 12046251 . A C 976.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.436;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.65;SOR=2.737 GT:AD:DP:GQ:PL 1/1:0,22:22:66:990,66,0 3 12046256 . GCCCCCCCCC G 976.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.043;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=21.38;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,22:22:66:990,66,0 3 12046268 . GCGCGA G 1066.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.293;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.16;SOR=3.352 GT:AD:DP:GQ:PL 1/1:0,23:23:72:1080,72,0 3 12046276 . A G 1471.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.547;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.20;SOR=3.442 GT:AD:DP:GQ:PL 1/1:0,24:24:99:1485,99,0 3 12046297 . A C 2506.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.943;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.79;SOR=0.970 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2520,169,0 3 12046318 . G C 2856.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.853;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.64;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2870,193,0 3 12046321 . A G 2881.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.787;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.41;SOR=1.000 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2895,196,0 3 12046362 . G C 2735.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.688;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.89;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2749,187,0 3 12046364 . G C 2810.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.849;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.26;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2824,196,0 3 12046372 . G C 2725.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.154;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.28;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2739,189,0 3 12229015 . A G 6202.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.113;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.06;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6216,662,0 3 12232074 . A G 4887.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.191;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.61;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4901,530,0 3 12571420 . G GT 47.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;CNN_1D=-1.073;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=2.158;SOR=0.787 GT:AD:DP:GQ:PL 0/1:43,10:53:55:55,0,969 3 12875443 . G A 2162.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;CNN_1D=-4.697;DP=177;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-1.476;SOR=0.848 GT:AD:DP:GQ:PL 0/1:85,92:177:99:2170,0,2005 3 12942761 . G A 2040.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;CNN_1D=-4.752;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=1.777;SOR=0.684 GT:AD:DP:GQ:PL 0/1:78,90:168:99:2048,0,1733 3 12942850 . GC G 5679.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.502;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.54;SOR=1.475 GT:AD:DP:GQ:PL 1/1:0,154:154:99:5693,463,0 3 13361287 . C T 1146.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;CNN_1D=0.279;DP=89;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=0.589;SOR=0.526 GT:AD:DP:GQ:PL 0/1:41,48:89:99:1154,0,998 3 13361391 . A G 1309.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;CNN_1D=-3.489;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-0.322;SOR=0.691 GT:AD:DP:GQ:PL 0/1:62,64:126:99:1317,0,1408 3 13364876 . G T 1497.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;CNN_1D=-5.438;DP=163;ExcessHet=3.0103;FS=3.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.104;SOR=0.687 GT:AD:DP:GQ:PL 0/1:91,70:161:99:1505,0,2265 3 13367406 . C T 1226.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;CNN_1D=-2.604;DP=116;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.130;SOR=0.602 GT:AD:DP:GQ:PL 0/1:60,56:116:99:1234,0,1306 3 13368892 . G A 1346.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;CNN_1D=-1.407;DP=118;ExcessHet=3.0103;FS=3.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=1.647;SOR=0.454 GT:AD:DP:GQ:PL 0/1:56,62:118:99:1354,0,1297 3 13373893 . G C 570.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;CNN_1D=0.190;DP=77;ExcessHet=3.0103;FS=4.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=1.643;SOR=0.605 GT:AD:DP:GQ:PL 0/1:48,28:76:99:578,0,1101 3 13379400 . C T 1005.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.886;CNN_1D=0.918;DP=80;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-0.010;SOR=0.495 GT:AD:DP:GQ:PL 0/1:34,46:80:99:1013,0,838 3 13383540 . A G 2836.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.913;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.17;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2850,282,0 3 13395579 . C A 1348.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.407;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.68;SOR=1.378 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1362,141,0 3 13399786 . G A 842.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;CNN_1D=-3.048;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=0.176;SOR=0.766 GT:AD:DP:GQ:PL 0/1:68,45:113:99:850,0,1549 3 13407556 . T C 2633.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.049;CNN_1D=2.303;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=-0.823;SOR=0.545 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2647,258,0 3 13421150 . C T 1277.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;CNN_1D=-2.300;DP=112;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-2.015;SOR=0.914 GT:AD:DP:GQ:PL 0/1:54,58:112:99:1285,0,1204 3 13545697 . C T 1912.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;CNN_1D=-5.248;DP=161;ExcessHet=3.0103;FS=4.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.592;SOR=0.793 GT:AD:DP:GQ:PL 0/1:75,86:161:99:1920,0,1569 3 13670481 . A G 1397.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;CNN_1D=-4.404;DP=144;ExcessHet=3.0103;FS=2.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=0.557;SOR=0.926 GT:AD:DP:GQ:PL 0/1:77,66:143:99:1405,0,1741 3 13670536 . A G 1306.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;CNN_1D=-2.732;DP=119;ExcessHet=3.0103;FS=5.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-2.245;SOR=0.941 GT:AD:DP:GQ:PL 0/1:64,54:118:99:1314,0,1538 3 13670776 . T C 389.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;CNN_1D=0.128;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=0.193;SOR=0.608 GT:AD:DP:GQ:PL 0/1:35,20:55:99:397,0,838 3 13896140 . A G 2309.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;CNN_1D=-6.391;DP=187;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-0.050;SOR=1.002 GT:AD:DP:GQ:PL 0/1:83,104:187:99:2317,0,1913 3 13896284 . C T 1861.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;CNN_1D=-3.241;DP=153;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-0.957;SOR=0.757 GT:AD:DP:GQ:PL 0/1:74,79:153:99:1869,0,1594 3 14197987 . A T 3209.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.492;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.66;SOR=0.960 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3223,348,0 3 14444243 . CT C 6046.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.447;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.93;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,135:135:99:6060,406,0 3 14444249 . CT C 6046.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.083;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.64;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,132:132:99:6060,406,0 3 14444276 . GC G 5200.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.792;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.02;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:5214,355,0 3 14444285 . GC G 5213.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.353;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.34;SOR=0.970 GT:AD:DP:GQ:PL 1/1:0,112:112:99:5227,355,0 3 14444308 . CT C 3967.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.203;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.08;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3981,274,0 3 14444318 . CT C 3680.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.358;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.91;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,79:79:99:3694,250,0 3 14444326 . AT A 3136.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.408;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.54;SOR=1.478 GT:AD:DP:GQ:PL 1/1:0,69:69:99:3150,211,0 3 14444329 . CT C 3091.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.168;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.09;SOR=1.542 GT:AD:DP:GQ:PL 1/1:0,68:68:99:3105,208,0 3 14712473 . G A 3875.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.960;CNN_1D=-1.096;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=-2.514;SOR=0.777 GT:AD:DP:GQ:PL 1/1:7,144:151:99:3889,270,0 3 14724413 . G A 4558.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.415;CNN_1D=-1.269;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.31;ReadPosRankSum=-2.352;SOR=0.785 GT:AD:DP:GQ:PL 1/1:4,157:161:99:4572,383,0 3 14724664 . C T 1383.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;CNN_1D=0.651;DP=88;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-0.115;SOR=0.836 GT:AD:DP:GQ:PL 0/1:35,53:88:99:1391,0,786 3 14768534 . A G 3732.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.819;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.49;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3746,393,0 3 14939479 . G T 4707.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.236;CNN_1D=-0.808;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.37;ReadPosRankSum=1.692;SOR=0.237 GT:AD:DP:GQ:PL 1/1:1,171:172:99:4721,475,0 3 14965507 . A G 4534.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.495;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.48;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4548,495,0 3 15610070 . C T 753.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;CNN_1D=-0.828;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=0.853;SOR=0.693 GT:AD:DP:GQ:PL 0/1:55,36:91:99:761,0,1275 3 15613279 . T TA 252.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;CNN_1D=-0.503;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=1.937;SOR=0.722 GT:AD:DP:GQ:PL 0/1:17,14:31:99:260,0,310 3 15637914 . G A 592.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;CNN_1D=0.263;DP=59;ExcessHet=3.0103;FS=7.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=-1.976;SOR=1.713 GT:AD:DP:GQ:PL 0/1:35,24:59:99:600,0,800 3 15737689 . G A 1131.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;CNN_1D=2.407;DP=63;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.96;ReadPosRankSum=-1.121;SOR=0.892 GT:AD:DP:GQ:PL 0/1:32,31:63:99:1139,0,1621 3 15737698 . T C 1143.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;CNN_1D=2.174;DP=64;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=-1.250;SOR=0.957 GT:AD:DP:GQ:PL 0/1:32,32:64:99:1151,0,1618 3 15753641 . A G 1102.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;CNN_1D=0.746;DP=81;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=0.471;SOR=0.994 GT:AD:DP:GQ:PL 0/1:33,48:81:99:1110,0,597 3 16305674 . C G 580.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;CNN_1D=0.928;DP=55;ExcessHet=3.0103;FS=7.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=0.455;SOR=1.068 GT:AD:DP:GQ:PL 0/1:29,26:55:99:588,0,663 3 16312564 . C T 577.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;CNN_1D=-0.522;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=-0.673;SOR=0.647 GT:AD:DP:GQ:PL 0/1:48,29:77:99:585,0,1133 3 16327855 . T G 1027.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;CNN_1D=-1.090;DP=97;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-1.073;SOR=0.590 GT:AD:DP:GQ:PL 0/1:50,47:97:99:1035,0,1126 3 16358584 . T C 1228.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;CNN_1D=-2.887;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=0.295;SOR=0.697 GT:AD:DP:GQ:PL 0/1:62,60:122:99:1236,0,1454 3 16364919 . A C 1104.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;CNN_1D=-3.724;DP=132;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-0.564;SOR=0.547 GT:AD:DP:GQ:PL 0/1:74,58:132:99:1112,0,1731 3 16450872 . T C 2183.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.832;CNN_1D=2.993;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.29;ReadPosRankSum=0.231;SOR=0.744 GT:AD:DP:GQ:PL 1/1:2,78:80:99:2197,190,0 3 16535229 . C T 1010.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.328;CNN_1D=1.304;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=0.444;SOR=0.739 GT:AD:DP:GQ:PL 0/1:22,43:65:99:1018,0,508 3 16636093 . TAAA T 59.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;CNN_1D=-0.114;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=1.834;SOR=0.693 GT:AD:DP:GQ:PL 0/1:6,2:8:67:67,0,167 3 16926553 . T C 526.02 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.755;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=37.46;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,12:12:36:540,36,0 3 16926557 . T G 571.02 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.897;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.62;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,13:13:39:585,39,0 3 16926561 . CT C 571.02 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.959;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.54;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,13:13:39:585,39,0 3 16926567 . T C 571.02 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.869;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.80;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,13:13:39:585,39,0 3 16926599 . T G 1094.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.040;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.14;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,25:25:75:1108,75,0 3 16926607 . T C 1243.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.137;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.57;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1257,93,0 3 16926642 . A G 2058.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.366;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.53;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,45:45:99:2072,144,0 3 16926648 . T G 2094.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.595;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.11;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,49:49:99:2108,150,0 3 16926666 . T G 1824.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.888;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.40;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1838,180,0 3 17051328 . T C 2114.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;CNN_1D=-3.089;DP=153;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=0.476;SOR=0.968 GT:AD:DP:GQ:PL 0/1:67,86:153:99:2122,0,1474 3 17053001 . C T 1023.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;CNN_1D=-0.319;DP=90;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=0.206;SOR=0.597 GT:AD:DP:GQ:PL 0/1:48,41:89:99:1031,0,1200 3 17053499 . A G 1228.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;CNN_1D=-1.514;DP=110;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=0.033;SOR=0.902 GT:AD:DP:GQ:PL 0/1:59,51:110:99:1236,0,1434 3 17208267 . T C 688.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;CNN_1D=-0.071;DP=77;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=2.038;SOR=0.713 GT:AD:DP:GQ:PL 0/1:45,32:77:99:696,0,1079 3 17275173 . G C 1973.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.255;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.79;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1987,213,0 3 18427924 . G T 976.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.381;CNN_1D=-1.965;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-0.976;SOR=0.700 GT:AD:DP:GQ:PL 0/1:48,46:94:99:984,0,1180 3 19436587 . T C 1397.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.597;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.10;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1411,144,0 3 19924058 . G A 316.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;CNN_1D=0.888;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=0.617;SOR=0.570 GT:AD:DP:GQ:PL 0/1:32,15:47:99:324,0,866 3 19930130 . A T 740.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;CNN_1D=1.894;DP=53;ExcessHet=3.0103;FS=2.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.97;ReadPosRankSum=-0.967;SOR=0.494 GT:AD:DP:GQ:PL 0/1:22,31:53:99:748,0,423 3 19959756 . G A 433.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.502;CNN_1D=1.555;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=1.071;SOR=0.574 GT:AD:DP:GQ:PL 0/1:27,23:50:99:441,0,672 3 19961330 . C T 759.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;CNN_1D=1.119;DP=66;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=0.590;SOR=0.404 GT:AD:DP:GQ:PL 0/1:33,33:66:99:767,0,687 3 19962044 . G A 1166.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;CNN_1D=-2.679;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.639;SOR=0.657 GT:AD:DP:GQ:PL 0/1:72,54:126:99:1174,0,1593 3 19975215 . C A 1394.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;CNN_1D=-3.485;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=1.314;SOR=0.700 GT:AD:DP:GQ:PL 0/1:79,61:140:99:1402,0,1948 3 20212189 . A G 543.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;CNN_1D=1.026;DP=44;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=0.094;SOR=1.246 GT:AD:DP:GQ:PL 0/1:20,24:44:99:551,0,389 3 21462754 . A G 2250.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.077;CNN_1D=2.714;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.16;ReadPosRankSum=0.524;SOR=0.321 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2264,219,0 3 21462787 . G A 2649.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.491;CNN_1D=2.210;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.49;ReadPosRankSum=-1.005;SOR=0.285 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2663,266,0 3 21462880 . A G 520.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;CNN_1D=0.646;DP=63;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=1.153;SOR=0.527 GT:AD:DP:GQ:PL 0/1:38,25:63:99:528,0,882 3 24006477 . T A 2031.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.844;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.31;SOR=1.410 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2045,201,0 3 25639963 . C A 523.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;CNN_1D=2.823;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=1.133;SOR=0.693 GT:AD:DP:GQ:PL 0/1:21,21:42:99:531,0,488 3 25639973 . A AT 384.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;CNN_1D=1.224;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=-1.902;SOR=1.022 GT:AD:DP:GQ:PL 0/1:8,16:24:99:392,0,168 3 25661557 . T TA 427.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;CNN_1D=0.709;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-0.535;SOR=0.807 GT:AD:DP:GQ:PL 0/1:18,16:34:99:435,0,518 3 25679738 . T C 869.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.076;CNN_1D=2.828;DP=52;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.05;ReadPosRankSum=3.910;SOR=0.738 GT:AD:DP:GQ:PL 0/1:19,32:51:99:877,0,327 3 26751493 . A T 1551.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;CNN_1D=-2.530;DP=127;ExcessHet=3.0103;FS=6.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=1.001;SOR=0.963 GT:AD:DP:GQ:PL 0/1:65,62:127:99:1559,0,1623 3 27204052 . G A 1575.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;CNN_1D=-2.555;DP=127;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=0.100;SOR=0.579 GT:AD:DP:GQ:PL 0/1:55,72:127:99:1583,0,1271 3 27243045 . G C 1381.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;CNN_1D=-2.545;DP=130;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-0.104;SOR=0.608 GT:AD:DP:GQ:PL 0/1:65,64:129:99:1389,0,1476 3 27297816 . G C 792.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;CNN_1D=-0.575;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=0.462;SOR=0.703 GT:AD:DP:GQ:PL 0/1:49,39:88:99:800,0,1172 3 27326097 . G T 364.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;CNN_1D=1.353;DP=48;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.757;SOR=0.384 GT:AD:DP:GQ:PL 0/1:30,18:48:99:372,0,657 3 27326451 . A G 346.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;CNN_1D=1.234;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-0.128;SOR=0.627 GT:AD:DP:GQ:PL 0/1:27,18:45:99:354,0,685 3 27332820 . A G 1219.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;CNN_1D=-0.086;DP=92;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=0.847;SOR=0.611 GT:AD:DP:GQ:PL 0/1:40,52:92:99:1227,0,875 3 27343332 . A G 615.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;CNN_1D=1.756;DP=51;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=-0.521;SOR=0.560 GT:AD:DP:GQ:PL 0/1:23,28:51:99:623,0,541 3 27424718 . A G 2554.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.187;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.07;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2568,273,0 3 27763427 . G GCGGCGC 939.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;CNN_1D=-1.772;DP=87;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-1.152;SOR=0.585 GT:AD:DP:GQ:PL 0/1:55,31:86:99:947,0,2517 3 28520417 . T A 1129.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.954;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.95;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1143,117,0 3 28533658 . G A 905.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.186;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.43;SOR=0.880 GT:AD:DP:GQ:PL 1/1:0,33:33:99:919,99,0 3 30686414 . A G 510.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;CNN_1D=-3.534;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.020;SOR=0.606 GT:AD:DP:GQ:PL 0/1:72,27:99:99:518,0,1776 3 31712393 . C T 1810.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;CNN_1D=-6.502;DP=188;ExcessHet=3.0103;FS=4.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=3.369;SOR=0.804 GT:AD:DP:GQ:PL 0/1:107,81:188:99:1818,0,2477 3 31789582 . T C 1052.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;CNN_1D=-3.428;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.743;SOR=0.727 GT:AD:DP:GQ:PL 0/1:69,49:118:99:1060,0,1645 3 32031024 . C T 1002.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;CNN_1D=0.539;DP=82;ExcessHet=3.0103;FS=4.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-0.488;SOR=0.858 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1010,0,885 3 32031135 . A G 511.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;CNN_1D=0.319;DP=58;ExcessHet=3.0103;FS=7.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=0.509;SOR=1.689 GT:AD:DP:GQ:PL 0/1:35,23:58:99:519,0,898 3 32031615 . A C 742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.444;CNN_1D=3.177;DP=35;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.22;ReadPosRankSum=-1.126;SOR=1.022 GT:AD:DP:GQ:PL 0/1:16,19:35:99:750,0,1397 3 32031622 . T C 826.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.862;CNN_1D=3.317;DP=37;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.34;ReadPosRankSum=-2.070;SOR=0.990 GT:AD:DP:GQ:PL 0/1:16,21:37:99:834,0,1390 3 32031643 . A G 973.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;CNN_1D=2.630;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.28;ReadPosRankSum=-1.622;SOR=0.687 GT:AD:DP:GQ:PL 0/1:21,27:48:99:981,0,1503 3 32032397 . G T 1075.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;CNN_1D=0.752;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=2.025;SOR=0.685 GT:AD:DP:GQ:PL 0/1:37,49:86:99:1083,0,698 3 32032450 . C T 827.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;CNN_1D=1.743;DP=63;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=0.855;SOR=0.937 GT:AD:DP:GQ:PL 0/1:27,36:63:99:835,0,530 3 32927509 . G T 5896.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.192;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.94;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5910,632,0 3 32995928 . C T 1090.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;CNN_1D=-0.953;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-0.752;SOR=0.637 GT:AD:DP:GQ:PL 0/1:52,48:100:99:1098,0,1270 3 33055721 . A G 3809.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.043;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.47;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3823,375,0 3 33063050 . A G 1359.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;CNN_1D=0.499;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-0.810;SOR=0.687 GT:AD:DP:GQ:PL 0/1:41,58:99:99:1367,0,871 3 33138544 . A G 2163.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;CNN_1D=-6.911;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=0.123;SOR=0.695 GT:AD:DP:GQ:PL 0/1:95,91:186:99:2171,0,2089 3 33194990 . C A 5631.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.090;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.02;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5645,602,0 3 33195284 . G A 1470.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;CNN_1D=-1.261;DP=111;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=-2.069;SOR=0.650 GT:AD:DP:GQ:PL 0/1:48,63:111:99:1478,0,1100 3 33195309 . A G 1762.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;CNN_1D=-2.261;DP=130;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=-0.830;SOR=0.874 GT:AD:DP:GQ:PL 0/1:56,74:130:99:1770,0,1333 3 33255592 . A G 1403.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.106;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.50;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1417,138,0 3 33434831 . G A 858.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;CNN_1D=-2.349;DP=104;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-0.476;SOR=0.511 GT:AD:DP:GQ:PL 0/1:63,41:104:99:866,0,1350 3 33444286 . T G 1203.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;CNN_1D=1.117;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=-2.830;SOR=0.572 GT:AD:DP:GQ:PL 0/1:18,54:72:99:1211,0,305 3 33458266 . T C 789.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;CNN_1D=-0.099;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-0.088;SOR=0.641 GT:AD:DP:GQ:PL 0/1:36,37:73:99:797,0,827 3 33879770 . G A 1103.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;CNN_1D=-5.780;DP=117;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-3.210;QD=9.43;ReadPosRankSum=-1.835;SOR=0.756 GT:AD:DP:GQ:PL 0/1:64,53:117:99:1111,0,1451 3 35725250 . C T 1293.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;CNN_1D=-3.333;DP=127;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=0.830;SOR=0.699 GT:AD:DP:GQ:PL 0/1:62,64:126:99:1301,0,1241 3 35778773 . A G 1395.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;CNN_1D=-3.131;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=1.497;SOR=0.756 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1403,0,1355 3 36422126 . C T 1042.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;CNN_1D=3.131;DP=47;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.18;ReadPosRankSum=0.388;SOR=0.504 GT:AD:DP:GQ:PL 0/1:20,27:47:99:1050,0,989 3 36422135 . G A 1074.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;CNN_1D=2.872;DP=53;ExcessHet=3.0103;FS=2.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.28;ReadPosRankSum=0.633;SOR=0.373 GT:AD:DP:GQ:PL 0/1:25,28:53:99:1082,0,1084 3 36422216 . T C 970.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;CNN_1D=-1.538;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-0.175;SOR=0.632 GT:AD:DP:GQ:PL 0/1:53,41:94:99:978,0,1208 3 36779707 . G A 3208.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;CNN_1D=-6.655;DP=212;ExcessHet=3.0103;FS=2.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=1.030;SOR=0.560 GT:AD:DP:GQ:PL 0/1:83,129:212:99:3216,0,1855 3 36898381 . G A 2704.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;CNN_1D=-6.594;DP=212;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=1.564;SOR=0.835 GT:AD:DP:GQ:PL 0/1:100,112:212:99:2712,0,2314 3 37096013 . G A 671.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;CNN_1D=1.104;DP=62;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-0.634;SOR=0.826 GT:AD:DP:GQ:PL 0/1:32,30:62:99:679,0,751 3 37396678 . G A 428.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;CNN_1D=1.790;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=0.437;SOR=0.723 GT:AD:DP:GQ:PL 0/1:27,21:48:99:436,0,603 3 37523079 . G A 941.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;CNN_1D=-4.750;DP=151;ExcessHet=3.0103;FS=3.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-0.880;SOR=0.839 GT:AD:DP:GQ:PL 0/1:100,51:151:99:949,0,2365 3 37535984 . C G 1334.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.047;CNN_1D=-3.697;DP=125;ExcessHet=3.0103;FS=4.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=1.461;SOR=0.406 GT:AD:DP:GQ:PL 0/1:71,54:125:99:1342,0,1728 3 37536056 . C T 1540.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;CNN_1D=-5.151;DP=160;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=0.156;SOR=0.617 GT:AD:DP:GQ:PL 0/1:87,73:160:99:1548,0,1898 3 37574951 . G A 1684.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;CNN_1D=-2.651;DP=139;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=0.902;SOR=0.598 GT:AD:DP:GQ:PL 0/1:67,72:139:99:1692,0,1585 3 37778481 . G C 1494.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;CNN_1D=-3.983;DP=145;ExcessHet=3.0103;FS=3.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.174;SOR=0.952 GT:AD:DP:GQ:PL 0/1:73,71:144:99:1502,0,1683 3 38038982 . T C 871.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.078;CNN_1D=-0.061;DP=84;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.014;SOR=0.927 GT:AD:DP:GQ:PL 0/1:48,36:84:99:879,0,1025 3 38043904 . T C 1553.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;CNN_1D=-4.462;DP=161;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=0.820;SOR=0.769 GT:AD:DP:GQ:PL 0/1:89,72:161:99:1561,0,2084 3 38047680 . G A 1602.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;CNN_1D=-3.519;DP=151;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.730;SOR=0.620 GT:AD:DP:GQ:PL 0/1:77,74:151:99:1610,0,1771 3 38051941 . T C 1616.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;CNN_1D=-5.046;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-0.348;SOR=0.728 GT:AD:DP:GQ:PL 0/1:82,75:157:99:1624,0,1894 3 38080952 . T G 551.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;CNN_1D=0.117;DP=69;ExcessHet=3.0103;FS=2.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-0.662;SOR=0.454 GT:AD:DP:GQ:PL 0/1:44,25:69:99:559,0,1153 3 38081031 . A T 861.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;CNN_1D=1.271;DP=69;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=1.951;SOR=0.457 GT:AD:DP:GQ:PL 0/1:35,34:69:99:869,0,833 3 38125705 . G A 883.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;CNN_1D=0.291;DP=79;ExcessHet=3.0103;FS=2.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=1.101;SOR=0.777 GT:AD:DP:GQ:PL 0/1:37,42:79:99:891,0,761 3 38136520 . C G 1579.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;CNN_1D=-2.798;DP=136;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=0.860;SOR=0.631 GT:AD:DP:GQ:PL 0/1:67,69:136:99:1587,0,1592 3 38151731 . T C 2355.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;CNN_1D=-4.984;DP=179;ExcessHet=3.0103;FS=3.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=0.044;SOR=0.803 GT:AD:DP:GQ:PL 0/1:79,100:179:99:2363,0,1749 3 38350479 . T C 4083.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.752;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.40;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4097,446,0 3 38350519 . G A 4515.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.416;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.76;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4529,469,0 3 38350543 . A G 4277.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.145;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.14;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4291,456,0 3 38355225 . G A 769.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;CNN_1D=0.969;DP=72;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=0.300;SOR=0.538 GT:AD:DP:GQ:PL 0/1:40,32:72:99:777,0,960 3 38357817 . C T 1552.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;CNN_1D=-2.171;DP=116;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-1.626;SOR=0.807 GT:AD:DP:GQ:PL 0/1:50,66:116:99:1560,0,1070 3 38401839 . T C 3929.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.275;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.27;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3943,417,0 3 38404472 . C A 1213.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;CNN_1D=0.192;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=1.653;SOR=0.644 GT:AD:DP:GQ:PL 0/1:44,53:97:99:1221,0,989 3 38406773 . G T 3238.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.990;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.91;SOR=0.800 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3252,347,0 3 38408361 . G A 2294.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.015;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.68;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2308,240,0 3 38519424 . A G 1501.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;CNN_1D=-4.739;DP=157;ExcessHet=3.0103;FS=7.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-0.389;SOR=0.874 GT:AD:DP:GQ:PL 0/1:90,67:157:99:1509,0,2044 3 38524742 . C T 2115.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;CNN_1D=-7.754;DP=202;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-0.011;SOR=0.739 GT:AD:DP:GQ:PL 0/1:104,98:202:99:2123,0,2236 3 38592406 . A G 2456.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;CNN_1D=-4.931;DP=181;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=0.504;SOR=0.752 GT:AD:DP:GQ:PL 0/1:80,101:181:99:2464,0,1814 3 38622467 . T C 4175.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.437;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.40;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4189,439,0 3 38674712 . T C 3162.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.102;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.98;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3176,339,0 3 38739574 . T C 5785.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.812;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.93;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5799,600,0 3 38739845 . A G 3647.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.138;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.14;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3661,363,0 3 38763863 . G C 4108.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.310;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.76;SOR=0.720 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4122,443,0 3 38764998 . A G 3316.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.083;CNN_1D=1.492;DP=122;ExcessHet=3.0103;FS=2.149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.18;ReadPosRankSum=-0.174;SOR=0.485 GT:AD:DP:GQ:PL 1/1:3,119:122:99:3330,281,0 3 38766675 . A G 2787.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.636;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.15;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2801,296,0 3 38768247 . G A 3349.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.603;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.64;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3363,338,0 3 38768300 . T C 2826.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.754;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.84;SOR=0.820 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2840,294,0 3 38784029 . T C 2552.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.982;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.33;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2566,261,0 3 38793989 . G A 1939.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.469;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.83;SOR=1.539 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1953,194,0 3 38798171 . C T 2842.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.457;CNN_1D=1.181;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=-0.901;SOR=0.806 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2856,280,0 3 38945560 . A G 1940.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.616;CNN_1D=-1.408;DP=128;ExcessHet=3.0103;FS=4.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=-1.368;SOR=1.070 GT:AD:DP:GQ:PL 0/1:51,76:127:99:1948,0,1051 3 39111140 . C A 571.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;CNN_1D=-0.966;DP=86;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=0.069;SOR=0.879 GT:AD:DP:GQ:PL 0/1:57,29:86:99:579,0,1310 3 39152345 . G A 1037.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;CNN_1D=-2.078;DP=103;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-1.052;SOR=0.489 GT:AD:DP:GQ:PL 0/1:55,48:103:99:1045,0,1241 3 39161456 . G A 1819.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;CNN_1D=2.278;DP=82;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.19;ReadPosRankSum=-0.123;SOR=0.842 GT:AD:DP:GQ:PL 0/1:33,49:82:99:1827,0,1524 3 39161464 . G A 1819.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;CNN_1D=2.721;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.66;ReadPosRankSum=2.083;SOR=0.775 GT:AD:DP:GQ:PL 0/1:40,44:84:99:1827,0,1629 3 39180099 . T C 1535.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;CNN_1D=-2.083;DP=123;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=-0.972;SOR=0.811 GT:AD:DP:GQ:PL 0/1:55,68:123:99:1543,0,1229 3 39180263 . G A 843.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;CNN_1D=1.922;DP=54;ExcessHet=3.0103;FS=5.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=-1.975;SOR=0.243 GT:AD:DP:GQ:PL 0/1:19,35:54:99:851,0,463 3 39184959 . C T 1184.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;CNN_1D=-4.685;DP=154;ExcessHet=3.0103;FS=8.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=1.865;SOR=0.563 GT:AD:DP:GQ:PL 0/1:96,56:152:99:1192,0,2362 3 39185077 . G A 1408.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;CNN_1D=-5.647;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=1.124;SOR=0.687 GT:AD:DP:GQ:PL 0/1:92,64:156:99:1416,0,2250 3 39185248 . A G 1787.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.892;CNN_1D=-3.781;DP=146;ExcessHet=3.0103;FS=4.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=1.631;SOR=0.915 GT:AD:DP:GQ:PL 0/1:75,71:146:99:1795,0,1710 3 39186728 . C T 959.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.502;CNN_1D=-0.323;DP=84;ExcessHet=3.0103;FS=4.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-2.148;SOR=0.331 GT:AD:DP:GQ:PL 0/1:42,42:84:99:967,0,1094 3 39226127 . C T 2332.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;CNN_1D=-6.654;DP=216;ExcessHet=3.0103;FS=3.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=2.434;SOR=0.624 GT:AD:DP:GQ:PL 0/1:112,104:216:99:2340,0,2505 3 39227664 . G A 1837.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;CNN_1D=-6.669;DP=189;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.851;SOR=0.508 GT:AD:DP:GQ:PL 0/1:105,84:189:99:1845,0,2470 3 39228043 . T G 1944.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.217;CNN_1D=-2.640;DP=134;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=0.243;SOR=0.920 GT:AD:DP:GQ:PL 0/1:58,76:134:99:1952,0,1205 3 39229900 . T C 5695.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.267;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.36;SOR=0.800 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5709,582,0 3 39373902 . C G 1748.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;CNN_1D=-4.026;DP=157;ExcessHet=3.0103;FS=7.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.280;SOR=0.351 GT:AD:DP:GQ:PL 0/1:82,74:156:99:1756,0,1998 3 39431081 . G A 1179.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;CNN_1D=-2.028;DP=113;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.009;QD=10.44;ReadPosRankSum=0.356;SOR=0.533 GT:AD:DP:GQ:PL 0/1:56,57:113:99:1187,0,1301 3 39449137 . T C 277.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;CNN_1D=1.442;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=0.605;QD=5.91;ReadPosRankSum=2.180;SOR=0.634 GT:AD:DP:GQ:PL 0/1:31,16:47:99:285,0,691 3 39453160 . G A 626.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;CNN_1D=-1.738;DP=80;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-0.455;QD=7.83;ReadPosRankSum=-0.275;SOR=0.862 GT:AD:DP:GQ:PL 0/1:48,32:80:99:634,0,1109 3 40231883 . C T 4430.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.284;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.77;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4444,460,0 3 40251392 . T C 1381.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;CNN_1D=-1.404;DP=114;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=1.415;SOR=0.915 GT:AD:DP:GQ:PL 0/1:55,57:112:99:1389,0,1216 3 40286017 . T C 812.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;CNN_1D=-4.690;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.553;SOR=0.693 GT:AD:DP:GQ:PL 0/1:84,46:130:99:820,0,1829 3 40468896 . C T 1464.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;CNN_1D=-4.583;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-1.160;SOR=0.650 GT:AD:DP:GQ:PL 0/1:74,68:142:99:1472,0,1597 3 40498845 . C T 546.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;CNN_1D=0.367;DP=61;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-1.455;SOR=0.468 GT:AD:DP:GQ:PL 0/1:37,24:61:99:554,0,818 3 40503520 . A ACTGCTGCTG,ACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG 2059.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.664;CNN_1D=2.305;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=55.89;MQRankSum=0.385;QD=32.68;ReadPosRankSum=0.135;SOR=0.730 GT:AD:DP:GQ:PL 1/2:2,45,16:63:99:2076,711,595,1200,0,1793 3 41288466 . G A 1032.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;CNN_1D=-1.694;DP=107;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-2.192;SOR=0.671 GT:AD:DP:GQ:PL 0/1:58,49:107:99:1040,0,1311 3 41756965 . C T 3396.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;CNN_1D=-4.317;DP=183;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.56;ReadPosRankSum=1.071;SOR=0.809 GT:AD:DP:GQ:PL 0/1:94,89:183:99:3404,0,4417 3 41756986 . A T 3649.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;CNN_1D=-4.741;DP=198;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.43;ReadPosRankSum=1.778;SOR=0.579 GT:AD:DP:GQ:PL 0/1:98,100:198:99:3657,0,4508 3 41831203 . C T 1070.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;CNN_1D=-0.112;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=0.824;SOR=0.691 GT:AD:DP:GQ:PL 0/1:40,51:91:99:1078,0,885 3 41841716 . A C 3542.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.526;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.67;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3556,384,0 3 41877414 . T C 475.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;CNN_1D=-0.232;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=0.127;SOR=0.606 GT:AD:DP:GQ:PL 0/1:39,24:63:99:483,0,903 3 41877473 . C CAAA 356.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;CNN_1D=0.212;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-1.170;SOR=0.743 GT:AD:DP:GQ:PL 0/1:22,13:35:99:364,0,591 3 41925398 . C T 891.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.945;CNN_1D=-0.727;DP=74;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-1.156;QD=12.05;ReadPosRankSum=0.892;SOR=0.542 GT:AD:DP:GQ:PL 0/1:30,44:74:99:899,0,692 3 41925423 . T C 2004.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.040;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.23;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2018,213,0 3 41937000 . C T 130.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;CNN_1D=1.865;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=1.638;SOR=0.814 GT:AD:DP:GQ:PL 0/1:9,7:16:99:138,0,183 3 41938500 . G C 1289.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.528;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.43;SOR=1.251 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1303,140,0 3 41939993 . T A 913.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.901;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.36;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,36:36:99:927,106,0 3 41952852 . T C 965.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.645;CNN_1D=-1.389;DP=99;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-1.132;SOR=0.684 GT:AD:DP:GQ:PL 0/1:60,39:99:99:973,0,1365 3 41957466 . T G 767.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;CNN_1D=2.328;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=-1.282;SOR=0.665 GT:AD:DP:GQ:PL 0/1:18,33:51:99:775,0,371 3 41960006 . T C 249.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;CNN_1D=2.003;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-0.816;SOR=0.970 GT:AD:DP:GQ:PL 0/1:16,11:27:99:257,0,374 3 41996136 . T C 1712.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;CNN_1D=-2.081;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=0.701;SOR=0.744 GT:AD:DP:GQ:PL 0/1:48,78:126:99:1720,0,993 3 42236415 . A G 4255.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.737;CNN_1D=-0.292;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.76;ReadPosRankSum=1.438;SOR=0.291 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4269,441,0 3 42244321 . G A 4699.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.976;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.37;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4713,479,0 3 42251263 . C T 827.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;CNN_1D=-0.757;DP=80;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-1.742;SOR=0.872 GT:AD:DP:GQ:PL 0/1:44,36:80:99:835,0,980 3 42251329 . C T 1024.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;CNN_1D=-1.944;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.969;SOR=0.754 GT:AD:DP:GQ:PL 0/1:63,45:108:99:1032,0,1500 3 42251577 . C CGGA,CGGAGGA 3212.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.370;CNN_1D=0.846;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=34.91;ReadPosRankSum=1.234;SOR=0.536 GT:AD:DP:GQ:PL 1/2:8,46,38:92:99:3229,1223,1351,1481,0,1724 3 42305131 . C G 1876.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.494;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.75;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1890,183,0 3 42438754 . T C 648.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;CNN_1D=-0.731;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.584;SOR=0.776 GT:AD:DP:GQ:PL 0/1:45,30:75:99:656,0,1053 3 42728144 . A G 2081.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;CNN_1D=-4.150;DP=147;ExcessHet=3.0103;FS=8.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=0.245;SOR=1.339 GT:AD:DP:GQ:PL 0/1:66,81:147:99:2089,0,1462 3 42733468 . T C 3787.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.171;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.24;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3801,416,0 3 42735150 . T C 1405.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;CNN_1D=0.007;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=-0.662;SOR=0.642 GT:AD:DP:GQ:PL 0/1:37,57:94:99:1413,0,776 3 42735274 . A G 1464.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;CNN_1D=-0.940;DP=108;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=-1.848;SOR=0.465 GT:AD:DP:GQ:PL 0/1:44,64:108:99:1472,0,1656 3 42735276 . C T 931.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;CNN_1D=-2.343;DP=109;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=1.822;SOR=0.952 GT:AD:DP:GQ:PL 0/1:65,44:109:99:939,0,2556 3 42772038 . A T 1582.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;CNN_1D=-1.334;DP=124;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=1.903;SOR=0.717 GT:AD:DP:GQ:PL 0/1:53,70:123:99:1590,0,1166 3 42787469 . A G 1675.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;CNN_1D=-2.372;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-1.269;SOR=0.685 GT:AD:DP:GQ:PL 0/1:57,75:132:99:1683,0,1222 3 42907112 . A C 1162.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;CNN_1D=-1.026;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-0.995;SOR=0.651 GT:AD:DP:GQ:PL 0/1:53,49:102:99:1170,0,1263 3 42917047 . A G 5185.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.919;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.80;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5199,522,0 3 42956273 . T C 3866.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.226;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.51;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3880,393,0 3 43074430 . A G 2558.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;CNN_1D=-9.287;DP=247;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-1.100;SOR=0.748 GT:AD:DP:GQ:PL 0/1:136,111:247:99:2566,0,3452 3 43074871 . A G 4323.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.523;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.61;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4337,438,0 3 43097765 . G A 973.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;CNN_1D=-1.182;DP=102;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=2.879;SOR=0.574 GT:AD:DP:GQ:PL 0/1:57,45:102:99:981,0,1281 3 43414318 . A G 2631.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.216;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.99;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2645,281,0 3 43607224 . CA C 152.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;CNN_1D=-2.763;DP=40;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=1.803;SOR=1.163 GT:AD:DP:GQ:PL 0/1:20,11:31:99:160,0,300 3 44283672 . T C 1968.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.971;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.37;SOR=1.410 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1982,201,0 3 44283808 . C A 4640.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.164;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.95;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4654,497,0 3 44284584 . G A 762.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;CNN_1D=1.123;DP=67;ExcessHet=3.0103;FS=3.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-0.405;SOR=1.116 GT:AD:DP:GQ:PL 0/1:38,29:67:99:770,0,1021 3 44612050 . C T 1650.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.438;CNN_1D=-2.313;DP=133;ExcessHet=3.0103;FS=7.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=0.181;SOR=0.530 GT:AD:DP:GQ:PL 0/1:60,72:132:99:1658,0,1432 3 44692564 . C G 804.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;CNN_1D=1.617;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=1.275;SOR=0.631 GT:AD:DP:GQ:PL 0/1:32,35:67:99:812,0,699 3 44762830 . A G 1123.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;CNN_1D=-0.476;DP=91;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-1.017;SOR=0.823 GT:AD:DP:GQ:PL 0/1:44,47:91:99:1131,0,970 3 44763037 . A C 3385.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.579;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.50;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3399,332,0 3 44775962 . A G 2485.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.308;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.56;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2499,261,0 3 44854563 . A G 2167.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.953;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.80;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2181,251,0 3 44869026 . A T 1472.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.505;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.77;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1486,159,0 3 44884647 . C A 2738.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.765;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.66;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2752,297,0 3 44929287 . G C 1589.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;CNN_1D=-4.168;DP=154;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=0.882;SOR=0.754 GT:AD:DP:GQ:PL 0/1:78,76:154:99:1597,0,1814 3 44943069 . C T 1077.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;CNN_1D=-1.631;DP=100;ExcessHet=3.0103;FS=3.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-0.073;SOR=0.404 GT:AD:DP:GQ:PL 0/1:55,45:100:99:1085,0,1246 3 44943389 . G A 686.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;CNN_1D=-0.632;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.802;SOR=0.678 GT:AD:DP:GQ:PL 0/1:51,33:84:99:694,0,1170 3 44948479 . C T 1156.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;CNN_1D=-3.059;DP=119;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.449;SOR=0.903 GT:AD:DP:GQ:PL 0/1:68,51:119:99:1164,0,1546 3 44948590 . G A 1957.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;CNN_1D=-5.047;DP=175;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-0.845;SOR=0.538 GT:AD:DP:GQ:PL 0/1:84,91:175:99:1965,0,1712 3 45052775 . G C 2066.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.886;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.18;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2080,227,0 3 45077123 . G A 3786.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.122;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.53;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3800,372,0 3 45127515 . T C 4386.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.244;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.67;SOR=1.302 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4400,428,0 3 45134822 . T C 3494.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.550;CNN_1D=1.868;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.18;ReadPosRankSum=0.196;SOR=0.401 GT:AD:DP:GQ:PL 1/1:1,123:124:99:3508,331,0 3 45153708 . G A 1800.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.500;CNN_1D=-5.944;DP=178;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.101;SOR=0.779 GT:AD:DP:GQ:PL 0/1:100,78:178:99:1808,0,2190 3 45267058 . G A 367.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;CNN_1D=2.171;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=0.129;SOR=0.976 GT:AD:DP:GQ:PL 0/1:12,14:26:99:375,0,284 3 45267310 . C T 370.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;CNN_1D=2.053;DP=24;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=-0.176;SOR=1.085 GT:AD:DP:GQ:PL 0/1:14,10:24:99:378,0,634 3 45267321 . C T 373.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;CNN_1D=2.639;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=0.373;SOR=0.917 GT:AD:DP:GQ:PL 0/1:13,10:23:99:381,0,605 3 45527218 . T C 1868.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.200;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.30;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1882,197,0 3 45533224 . G A 4839.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.653;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.46;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4853,509,0 3 45559519 . T C 2536.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.638;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.27;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2550,278,0 3 45565554 . A G 2429.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.202;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.92;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2443,252,0 3 45637253 . C T 1850.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;CNN_1D=-3.664;DP=156;ExcessHet=3.0103;FS=4.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-0.138;SOR=0.618 GT:AD:DP:GQ:PL 0/1:82,74:156:99:1858,0,2183 3 45637439 . T C 2565.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;CNN_1D=-2.898;DP=158;ExcessHet=3.0103;FS=2.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=1.105;SOR=0.575 GT:AD:DP:GQ:PL 0/1:63,95:158:99:2573,0,1509 3 45677635 . C CT 5220.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.506;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.81;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,113:113:99:5234,352,0 3 45677638 . CA C 5318.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.403;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.71;SOR=0.910 GT:AD:DP:GQ:PL 1/1:0,120:120:99:5332,364,0 3 45776875 . CT C 216.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;CNN_1D=-0.876;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-0.267;SOR=0.534 GT:AD:DP:GQ:PL 0/1:35,15:50:99:224,0,1021 3 45779136 . A T 738.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.352;CNN_1D=0.329;DP=68;ExcessHet=3.0103;FS=10.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=2.425;SOR=1.544 GT:AD:DP:GQ:PL 0/1:40,28:68:99:746,0,907 3 45817418 . A G 3885.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.797;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.99;SOR=1.072 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3899,402,0 3 45837886 . G C 1154.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;CNN_1D=-1.661;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=0.234;SOR=0.741 GT:AD:DP:GQ:PL 0/1:66,51:117:99:1162,0,1580 3 45996761 . G A 3866.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.196;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.64;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3880,404,0 3 46007823 . G T 1477.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;CNN_1D=0.692;DP=94;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=1.010;SOR=0.515 GT:AD:DP:GQ:PL 0/1:55,39:94:99:1485,0,3185 3 46007825 . T C 1477.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;CNN_1D=0.660;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=0.913;SOR=0.621 GT:AD:DP:GQ:PL 0/1:57,40:97:99:1485,0,3185 3 46008087 . G A 1002.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.150;CNN_1D=-0.931;DP=95;ExcessHet=3.0103;FS=3.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-1.032;SOR=0.728 GT:AD:DP:GQ:PL 0/1:49,46:95:99:1010,0,1211 3 46008790 . G A 1092.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;CNN_1D=-0.274;DP=95;ExcessHet=3.0103;FS=5.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=-1.030;SOR=0.696 GT:AD:DP:GQ:PL 0/1:51,44:95:99:1100,0,1341 3 46009487 . G A 1447.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;CNN_1D=-3.743;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-0.870;SOR=0.693 GT:AD:DP:GQ:PL 0/1:66,66:132:99:1455,0,1553 3 46009864 . C G 4441.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.812;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.06;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4455,429,0 3 46010007 . T C 2230.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.035;CNN_1D=-7.520;DP=199;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.138;SOR=0.736 GT:AD:DP:GQ:PL 0/1:106,93:199:99:2238,0,2335 3 46010077 . C T 5793.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.987;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.11;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5807,597,0 3 46021218 . G T 2844.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.363;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.09;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2858,315,0 3 46063329 . T C 1376.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.223;CNN_1D=-1.583;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=-0.006;SOR=0.703 GT:AD:DP:GQ:PL 0/1:58,56:114:99:1384,0,1272 3 46306700 . T C 1477.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;CNN_1D=-2.197;DP=119;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-0.711;SOR=0.618 GT:AD:DP:GQ:PL 0/1:56,63:119:99:1485,0,1277 3 46399798 . T C 2350.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;CNN_1D=-4.660;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.33;ReadPosRankSum=1.308;SOR=0.674 GT:AD:DP:GQ:PL 0/1:71,93:164:99:2358,0,1603 3 46449978 . A C 1556.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.309;CNN_1D=-4.803;DP=161;ExcessHet=3.0103;FS=2.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=0.999;SOR=0.778 GT:AD:DP:GQ:PL 0/1:97,63:160:99:1564,0,2247 3 46450070 . T A 973.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;CNN_1D=-2.569;DP=123;ExcessHet=3.0103;FS=0.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.013;SOR=0.780 GT:AD:DP:GQ:PL 0/1:76,46:122:99:981,0,1949 3 46450297 . A G 2352.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;CNN_1D=-6.248;DP=200;ExcessHet=3.0103;FS=3.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=2.282;SOR=0.794 GT:AD:DP:GQ:PL 0/1:98,102:200:99:2360,0,2320 3 46480801 . A G 1254.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.240;CNN_1D=-2.634;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.152;SOR=0.639 GT:AD:DP:GQ:PL 0/1:67,51:118:99:1262,0,1508 3 46480958 . C G 1346.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;CNN_1D=-3.981;DP=144;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-1.504;SOR=0.771 GT:AD:DP:GQ:PL 0/1:81,63:144:99:1354,0,1856 3 46484964 . G A 2067.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;CNN_1D=-5.151;DP=167;ExcessHet=3.0103;FS=4.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=-1.898;SOR=0.821 GT:AD:DP:GQ:PL 0/1:74,93:167:99:2075,0,1571 3 46488854 . T C 1955.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;CNN_1D=-6.225;DP=188;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=2.266;SOR=0.565 GT:AD:DP:GQ:PL 0/1:98,90:188:99:1963,0,2018 3 46490474 . G A 1228.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;CNN_1D=-0.873;DP=115;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=1.431;SOR=0.804 GT:AD:DP:GQ:PL 0/1:60,55:115:99:1236,0,1365 3 46501213 . T C 4275.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.921;CNN_1D=-0.853;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.07;ReadPosRankSum=-1.231;SOR=0.718 GT:AD:DP:GQ:PL 1/1:6,158:164:99:4289,357,0 3 46501268 . C T 1437.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;CNN_1D=-2.913;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.080;SOR=0.661 GT:AD:DP:GQ:PL 0/1:64,65:129:99:1445,0,1447 3 46501284 . C CCTT 4641.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.384;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.01;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,104:104:99:4655,313,0 3 46574256 . C T 2360.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.723;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.77;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2374,255,0 3 46580591 . G T 2748.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.908;CNN_1D=2.643;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.48;ReadPosRankSum=-1.921;SOR=0.734 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2762,251,0 3 46586622 . T C 1555.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;CNN_1D=-3.590;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=0.098;SOR=0.643 GT:AD:DP:GQ:PL 0/1:74,72:146:99:1563,0,1689 3 46592987 . A G 925.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;CNN_1D=0.353;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=1.397;SOR=0.646 GT:AD:DP:GQ:PL 0/1:43,44:87:99:933,0,921 3 46620614 . T C 979.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.716;CNN_1D=-0.713;DP=95;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-0.425;SOR=0.556 GT:AD:DP:GQ:PL 0/1:54,40:94:99:987,0,1253 3 46620760 . T G 1230.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;CNN_1D=-2.328;DP=109;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-0.959;QD=11.29;ReadPosRankSum=-0.233;SOR=0.602 GT:AD:DP:GQ:PL 0/1:56,53:109:99:1238,0,1306 3 46620801 . G A 1098.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;CNN_1D=-3.665;DP=109;ExcessHet=3.0103;FS=3.498;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-1.100;QD=10.08;ReadPosRankSum=-0.222;SOR=1.026 GT:AD:DP:GQ:PL 0/1:59,50:109:99:1106,0,1478 3 46658737 . A G 2464.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.911;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.49;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2478,278,0 3 46713457 . C G 1833.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;CNN_1D=-4.798;DP=172;ExcessHet=3.0103;FS=4.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.345;SOR=0.453 GT:AD:DP:GQ:PL 0/1:85,87:172:99:1841,0,1987 3 46727909 . C A 1134.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;CNN_1D=-0.623;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=1.238;SOR=0.653 GT:AD:DP:GQ:PL 0/1:47,50:97:99:1142,0,1011 3 46729757 . C G 1798.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.238;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1812,183,0 3 46751073 . TAAG T 2782.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;CNN_1D=-4.330;DP=173;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.06;ReadPosRankSum=1.702;SOR=0.655 GT:AD:DP:GQ:PL 0/1:74,72:146:99:2790,0,2884 3 46753970 . C T 1161.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;CNN_1D=-1.460;DP=113;ExcessHet=3.0103;FS=1.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=0.450;SOR=0.537 GT:AD:DP:GQ:PL 0/1:65,48:113:99:1169,0,2511 3 46753976 . T C 1278.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.066;CNN_1D=-1.297;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=-0.308;SOR=0.648 GT:AD:DP:GQ:PL 0/1:47,60:107:99:1286,0,1812 3 46755937 . C T 2696.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.272;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.96;SOR=1.230 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2710,269,0 3 46759010 . T G 1507.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;CNN_1D=-6.129;DP=176;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=0.828;SOR=0.798 GT:AD:DP:GQ:PL 0/1:101,74:175:99:1515,0,2397 3 46759228 . A AAGC 2080.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;CNN_1D=-3.438;DP=134;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-0.096;SOR=0.815 GT:AD:DP:GQ:PL 0/1:72,56:128:99:2088,0,2955 3 46775322 . A G 3626.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.154;CNN_1D=1.313;DP=129;ExcessHet=3.0103;FS=7.225;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.33;ReadPosRankSum=-1.345;SOR=0.627 GT:AD:DP:GQ:PL 1/1:2,126:128:99:3640,305,0 3 46775383 . A G 2311.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.870;CNN_1D=3.202;DP=77;ExcessHet=3.0103;FS=2.507;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.01;ReadPosRankSum=0.527;SOR=1.028 GT:AD:DP:GQ:PL 1/1:3,74:77:99:2325,141,0 3 46775608 . A G 2872.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.647;CNN_1D=2.656;DP=106;ExcessHet=3.0103;FS=3.093;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.09;ReadPosRankSum=-1.210;SOR=0.314 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2886,280,0 3 46777881 . C G 5418.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.290;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.01;SOR=1.064 GT:AD:DP:GQ:PL 1/1:0,124:124:99:5432,373,0 3 46777885 . T C 5317.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.372;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.94;SOR=1.093 GT:AD:DP:GQ:PL 1/1:0,116:116:99:5331,364,0 3 46783959 . T C 1634.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;CNN_1D=-4.802;DP=152;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-1.286;SOR=0.840 GT:AD:DP:GQ:PL 0/1:83,69:152:99:1642,0,2019 3 46784467 . G A 1477.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;CNN_1D=-7.166;DP=181;ExcessHet=3.0103;FS=8.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=-1.389;SOR=0.994 GT:AD:DP:GQ:PL 0/1:109,72:181:99:1485,0,2568 3 46784580 . G A 1088.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;CNN_1D=-0.174;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=3.276;SOR=0.729 GT:AD:DP:GQ:PL 0/1:51,47:98:99:1096,0,1241 3 47018214 . T C 3027.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.810;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.03;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3041,324,0 3 47036756 . C G 1955.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.471;CNN_1D=3.377;DP=75;ExcessHet=3.0103;FS=2.517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.07;ReadPosRankSum=0.852;SOR=1.048 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1969,142,0 3 47043622 . G A 2030.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.506;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.42;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2044,206,0 3 47449058 . T C 6117.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.140;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.55;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6131,619,0 3 47451411 . C T 2847.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.592;CNN_1D=2.937;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.29;ReadPosRankSum=0.829;SOR=0.387 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2861,242,0 3 47452087 . G A 5651.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.097;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.22;SOR=1.325 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5665,560,0 3 47452118 . G A 5803.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.353;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.87;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5817,599,0 3 47452507 . G A 3284.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;CNN_1D=-9.100;DP=258;ExcessHet=3.0103;FS=3.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=0.402;SOR=0.512 GT:AD:DP:GQ:PL 0/1:112,146:258:99:3292,0,2467 3 47454399 . G A 2222.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.701;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=22.91;SOR=5.158 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2236,273,0 3 47462200 . T C 3465.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.573;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.94;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3479,336,0 3 47956424 . C T 2629.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.718;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.10;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2643,291,0 3 47958037 . G T 4820.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.913;CNN_1D=-1.605;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.54;ReadPosRankSum=0.184;SOR=0.710 GT:AD:DP:GQ:PL 1/1:5,170:175:99:4834,355,0 3 48019346 . A C 671.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;CNN_1D=1.065;DP=62;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-1.190;SOR=0.844 GT:AD:DP:GQ:PL 0/1:31,31:62:99:679,0,688 3 48282695 . A G 2707.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.183;CNN_1D=2.181;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.62;ReadPosRankSum=-1.090;SOR=0.563 GT:AD:DP:GQ:PL 1/1:5,93:98:99:2721,158,0 3 48309828 . C G 5769.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.100;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.43;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5783,588,0 3 48360992 . T G 2731.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.119;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.37;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2745,279,0 3 48369822 . T A 1180.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;CNN_1D=-3.156;DP=127;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.835;SOR=0.691 GT:AD:DP:GQ:PL 0/1:71,56:127:99:1188,0,1587 3 48419897 . C T 1871.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;CNN_1D=-3.694;DP=155;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=0.788;SOR=0.803 GT:AD:DP:GQ:PL 0/1:67,88:155:99:1879,0,1375 3 48422235 . T A 1399.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;CNN_1D=-4.451;DP=140;ExcessHet=3.0103;FS=3.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-1.640;SOR=0.966 GT:AD:DP:GQ:PL 0/1:76,64:140:99:1407,0,1697 3 48454468 . C T 1654.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;CNN_1D=-3.530;DP=144;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=0.402;SOR=0.461 GT:AD:DP:GQ:PL 0/1:73,71:144:99:1662,0,1802 3 48461313 . C G 1947.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;CNN_1D=-4.112;DP=149;ExcessHet=3.0103;FS=5.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=0.392;SOR=0.767 GT:AD:DP:GQ:PL 0/1:69,80:149:99:1955,0,1560 3 48463618 . T A 1064.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;CNN_1D=-0.498;DP=98;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-0.366;SOR=0.571 GT:AD:DP:GQ:PL 0/1:51,47:98:99:1072,0,1173 3 48465206 . C T 1879.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;CNN_1D=-4.442;DP=160;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=-1.286;SOR=0.716 GT:AD:DP:GQ:PL 0/1:75,84:159:99:1887,0,1805 3 48474249 . A G 1929.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;CNN_1D=-3.991;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=0.190;SOR=0.739 GT:AD:DP:GQ:PL 0/1:71,81:152:99:1937,0,1687 3 48476431 . C G 3220.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.901;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.88;SOR=1.190 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3234,303,0 3 48481972 . A C 1175.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;CNN_1D=-1.354;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-1.567;SOR=0.619 GT:AD:DP:GQ:PL 0/1:52,52:104:99:1183,0,1231 3 48508585 . C T 3108.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.743;CNN_1D=-9.403;DP=253;ExcessHet=3.0103;FS=2.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=0.786;SOR=0.870 GT:AD:DP:GQ:PL 0/1:120,133:253:99:3116,0,3130 3 48625266 . T C 1295.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;CNN_1D=-0.312;DP=101;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-1.601;SOR=0.509 GT:AD:DP:GQ:PL 0/1:47,54:101:99:1303,0,1066 3 48659009 . G T 1277.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;CNN_1D=-2.351;DP=122;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-0.115;SOR=0.444 GT:AD:DP:GQ:PL 0/1:65,57:122:99:1285,0,1530 3 48727112 . G A 3557.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.522;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.15;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3571,392,0 3 48731961 . A G 441.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;CNN_1D=1.292;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=-0.788;SOR=0.714 GT:AD:DP:GQ:PL 0/1:23,21:44:99:449,0,532 3 48896011 . G A 1393.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;CNN_1D=-2.579;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=2.185;SOR=0.725 GT:AD:DP:GQ:PL 0/1:74,61:135:99:1401,0,1615 3 49044767 . C T 1454.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.914;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.67;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1468,147,0 3 49054692 . T C 4211.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.133;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.07;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4225,449,0 3 49161660 . T C 1120.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;CNN_1D=-1.832;DP=113;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=1.510;SOR=0.823 GT:AD:DP:GQ:PL 0/1:66,47:113:99:1128,0,1623 3 49162284 . C T 1718.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;CNN_1D=-5.004;DP=160;ExcessHet=3.0103;FS=6.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=0.038;SOR=0.736 GT:AD:DP:GQ:PL 0/1:86,73:159:99:1726,0,2036 3 49200627 . A G 6100.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.405;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.77;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6114,636,0 3 49200692 . T A 5508.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.151;CNN_1D=-1.261;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.69;ReadPosRankSum=0.036;SOR=0.316 GT:AD:DP:GQ:PL 1/1:1,191:192:99:5522,538,0 3 49273996 . C T 2574.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.972;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.68;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2588,279,0 3 49394834 . G A 839.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;CNN_1D=-0.987;DP=77;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=53.54;MQRankSum=-0.555;QD=10.90;ReadPosRankSum=0.180;SOR=0.551 GT:AD:DP:GQ:PL 0/1:44,33:77:99:847,0,1045 3 49395673 . GGCCGCC G,GGCC 1977.06 PASS AC=1,1;AF=0.500,0.500;AN=2;CNN_1D=1.845;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.31;QD=30.88;SOR=1.112 GT:AD:DP:GQ:PL 1/2:0,22,27:49:99:1994,1099,1108,901,0,820 3 49455330 . C T 1700.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;CNN_1D=-3.683;DP=139;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=0.577;SOR=0.602 GT:AD:DP:GQ:PL 0/1:64,75:139:99:1708,0,1599 3 49548008 . C G 3677.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.089;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.14;SOR=1.160 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3691,366,0 3 49570200 . C T 2156.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.718;CNN_1D=-7.964;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.715;SOR=0.689 GT:AD:DP:GQ:PL 0/1:112,101:213:99:2164,0,2741 3 49689210 . G A 1787.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;CNN_1D=-4.801;DP=166;ExcessHet=3.0103;FS=6.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-1.830;SOR=0.823 GT:AD:DP:GQ:PL 0/1:91,75:166:99:1795,0,2264 3 49690199 . G A 3147.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.205;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.87;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3161,327,0 3 49690496 . C T 1573.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;CNN_1D=-3.305;DP=141;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=1.211;SOR=0.671 GT:AD:DP:GQ:PL 0/1:72,69:141:99:1581,0,1639 3 49701298 . G A 789.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;CNN_1D=-1.312;DP=83;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.809;SOR=0.895 GT:AD:DP:GQ:PL 0/1:47,36:83:99:797,0,1177 3 49701983 . G A 1438.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;CNN_1D=-3.028;DP=130;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-0.932;SOR=0.829 GT:AD:DP:GQ:PL 0/1:65,65:130:99:1446,0,1447 3 49714225 . T C 1658.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;CNN_1D=-6.136;DP=175;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-1.344;SOR=0.794 GT:AD:DP:GQ:PL 0/1:98,77:175:99:1666,0,2330 3 49721532 . G A 2046.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;CNN_1D=-4.992;DP=182;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.353;SOR=0.706 GT:AD:DP:GQ:PL 0/1:90,92:182:99:2054,0,2015 3 49721798 . C A 1604.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.529;CNN_1D=-2.609;DP=117;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-0.247;QD=13.71;ReadPosRankSum=-0.300;SOR=0.519 GT:AD:DP:GQ:PL 0/1:47,70:117:99:1612,0,1098 3 49723784 . C A 1016.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;CNN_1D=2.875;DP=71;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=2.432;QD=14.32;ReadPosRankSum=-0.138;SOR=1.112 GT:AD:DP:GQ:PL 0/1:34,37:71:99:1024,0,861 3 49724183 . C G 61.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.775;CNN_1D=-11.270;DP=67;ExcessHet=3.0103;FS=22.329;MLEAC=1;MLEAF=0.500;MQ=48.92;MQRankSum=-3.532;QD=0.92;ReadPosRankSum=-1.577;SOR=4.405 GT:AD:DP:GQ:PL 0/1:59,8:67:69:69,0,1570 3 49724808 . T C 2528.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.220;CNN_1D=2.035;DP=92;ExcessHet=3.0103;FS=2.266;MLEAC=2;MLEAF=1.00;MQ=59.18;MQRankSum=-0.594;QD=27.78;ReadPosRankSum=-0.089;SOR=0.627 GT:AD:DP:GQ:PL 1/1:3,88:91:99:2542,184,0 3 49726028 . T C 785.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.577;CNN_1D=-8.367;DP=96;ExcessHet=3.0103;FS=3.852;MLEAC=1;MLEAF=0.500;MQ=52.06;MQRankSum=-7.111;QD=8.18;ReadPosRankSum=3.140;SOR=0.476 GT:AD:DP:GQ:PL 0/1:53,43:96:99:793,0,1261 3 49726070 . G A 616.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.164;CNN_1D=-8.146;DP=98;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.500;MQ=51.54;MQRankSum=-5.161;QD=6.29;ReadPosRankSum=0.464;SOR=0.927 GT:AD:DP:GQ:PL 0/1:62,36:98:99:624,0,1480 3 49739507 . G C 2869.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.770;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.24;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2883,267,0 3 49753003 . T G 1678.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.156;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.44;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1692,177,0 3 49760039 . T C 4045.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.414;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.89;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4059,420,0 3 49828911 . GA G 450.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;CNN_1D=-2.310;DP=111;ExcessHet=3.0103;FS=3.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.938;SOR=1.064 GT:AD:DP:GQ:PL 0/1:77,29:106:99:458,0,1610 3 49832788 . G A 1331.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;CNN_1D=-1.978;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.292;SOR=0.682 GT:AD:DP:GQ:PL 0/1:67,58:125:99:1339,0,1445 3 49928691 . T C 2579.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.963;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.64;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2593,261,0 3 49935526 . T G 1692.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;CNN_1D=-3.927;DP=150;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=-0.235;SOR=0.767 GT:AD:DP:GQ:PL 0/1:75,75:150:99:1700,0,1644 3 49940812 . G T 1630.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.526;CNN_1D=-4.851;DP=163;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.105;SOR=0.686 GT:AD:DP:GQ:PL 0/1:87,74:161:99:1638,0,2199 3 50114515 . C T 1485.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.283;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.00;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1499,165,0 3 50144951 . T C 3320.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.929;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.56;SOR=0.810 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3334,374,0 3 50153356 . T C 2137.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.383;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.49;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2151,225,0 3 50155887 . TGA T 233.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;CNN_1D=-5.223;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.053;SOR=0.651 GT:AD:DP:GQ:PL 0/1:89,18:107:99:241,0,2739 3 50197097 . C T 484.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;CNN_1D=-1.260;DP=64;ExcessHet=3.0103;FS=3.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-1.887;SOR=1.106 GT:AD:DP:GQ:PL 0/1:39,25:64:99:492,0,859 3 50222926 . T A 2669.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.689;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.39;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2683,281,0 3 50251833 . A AG 3298.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.456;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.12;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3312,280,0 3 50306752 . G GC 780.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.734;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.20;SOR=0.770 GT:AD:DP:GQ:PL 1/1:0,25:25:75:794,75,0 3 50323947 . T C 1537.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;CNN_1D=-2.006;DP=128;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-0.200;SOR=0.572 GT:AD:DP:GQ:PL 0/1:62,66:128:99:1545,0,1376 3 50329826 . A G 896.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;CNN_1D=-2.107;DP=99;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.121;SOR=0.516 GT:AD:DP:GQ:PL 0/1:58,41:99:99:904,0,1338 3 50357869 . A C 864.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;CNN_1D=0.694;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=-0.282;SOR=0.653 GT:AD:DP:GQ:PL 0/1:34,33:67:99:872,0,887 3 50369546 . C A 1092.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;CNN_1D=-2.367;DP=110;ExcessHet=3.0103;FS=6.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.925;SOR=0.633 GT:AD:DP:GQ:PL 0/1:60,50:110:99:1100,0,1398 3 50402309 . C G 1857.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;CNN_1D=-5.397;DP=166;ExcessHet=3.0103;FS=2.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=1.867;SOR=0.698 GT:AD:DP:GQ:PL 0/1:85,80:165:99:1865,0,2067 3 50597092 . G A 3381.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.484;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.41;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3395,356,0 3 50609624 . T G 4278.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.171;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.33;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4292,453,0 3 51273773 . T C 1285.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.536;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.34;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1299,141,0 3 51422766 . G T 1234.02 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.232;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=23.73;SOR=0.223 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1248,143,0 3 51929360 . GA G 798.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.108;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.69;SOR=3.098 GT:AD:DP:GQ:PL 1/1:0,26:26:78:812,78,0 3 51978220 . A G 4076.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.293;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.54;SOR=0.720 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4090,443,0 3 51990119 . A C 1177.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.893;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.18;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1191,117,0 3 51990315 . A G 1620.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.627;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.93;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1634,168,0 3 52027853 . T TCCTTGG 698.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;CNN_1D=0.472;DP=58;ExcessHet=3.0103;FS=2.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.97;ReadPosRankSum=1.496;SOR=1.179 GT:AD:DP:GQ:PL 0/1:32,18:50:99:706,0,1960 3 52188361 . C T 1896.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;CNN_1D=-0.841;DP=119;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=1.236;SOR=0.497 GT:AD:DP:GQ:PL 0/1:39,79:118:99:1904,0,777 3 52237970 . C T 827.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;CNN_1D=-0.463;DP=88;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=1.097;SOR=0.810 GT:AD:DP:GQ:PL 0/1:47,41:88:99:835,0,1077 3 52256697 . C T 817.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;CNN_1D=-0.602;DP=87;ExcessHet=3.0103;FS=5.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=1.738;SOR=0.946 GT:AD:DP:GQ:PL 0/1:51,36:87:99:825,0,1283 3 52264907 . T C 947.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;CNN_1D=-0.840;DP=92;ExcessHet=3.0103;FS=3.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-0.315;SOR=0.399 GT:AD:DP:GQ:PL 0/1:49,42:91:99:955,0,1066 3 52394055 . G A 1602.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;CNN_1D=-2.813;DP=140;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-0.203;SOR=0.633 GT:AD:DP:GQ:PL 0/1:63,76:139:99:1610,0,1388 3 52430698 . A G 2797.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.139;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.54;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2811,293,0 3 52453893 . C T 2177.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.480;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.42;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2191,225,0 3 52492707 . T C 2370.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.984;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.21;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2384,252,0 3 52507782 . G A 734.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.505;CNN_1D=-2.459;DP=98;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=0.026;SOR=0.905 GT:AD:DP:GQ:PL 0/1:62,36:98:99:742,0,1374 3 52510592 . G A 2473.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.226;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.43;SOR=1.030 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2487,261,0 3 52522565 . G A 1496.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;CNN_1D=-3.527;DP=136;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-1.874;SOR=0.780 GT:AD:DP:GQ:PL 0/1:71,65:136:99:1504,0,1685 3 52523405 . C T 6063.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.893;CNN_1D=-3.572;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.15;ReadPosRankSum=1.041;SOR=0.427 GT:AD:DP:GQ:PL 1/1:1,207:208:99:6077,585,0 3 52540773 . T C 5869.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-3.430;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.49;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5883,618,0 3 52544470 . A G 3281.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.925;CNN_1D=1.572;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.53;ReadPosRankSum=-0.011;SOR=1.035 GT:AD:DP:GQ:PL 1/1:2,113:115:99:3295,310,0 3 52554304 . G C 4666.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.062;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.90;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4680,453,0 3 52555957 . T C 1299.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;CNN_1D=-1.664;DP=115;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-0.953;SOR=0.579 GT:AD:DP:GQ:PL 0/1:59,55:114:99:1307,0,1397 3 52556890 . A G 1236.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.310;CNN_1D=-2.372;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-0.614;SOR=0.760 GT:AD:DP:GQ:PL 0/1:55,57:112:99:1244,0,1423 3 52557038 . C T 1136.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598;CNN_1D=-0.973;DP=100;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=0.248;SOR=0.859 GT:AD:DP:GQ:PL 0/1:50,50:100:99:1144,0,1314 3 52558008 . T C 903.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;CNN_1D=-2.248;DP=106;ExcessHet=3.0103;FS=3.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-1.049;SOR=0.396 GT:AD:DP:GQ:PL 0/1:63,43:106:99:911,0,1585 3 52558133 . T C 1219.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.069;CNN_1D=-3.885;DP=132;ExcessHet=3.0103;FS=3.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.355;SOR=0.964 GT:AD:DP:GQ:PL 0/1:73,58:131:99:1227,0,1809 3 52558904 . A T 986.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;CNN_1D=-0.104;DP=76;ExcessHet=3.0103;FS=3.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=0.219;SOR=1.144 GT:AD:DP:GQ:PL 0/1:36,40:76:99:994,0,847 3 52567617 . A G 298.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;CNN_1D=0.974;DP=30;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-1.541;SOR=0.473 GT:AD:DP:GQ:PL 0/1:14,16:30:99:306,0,281 3 52584431 . T TCTC 1262.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;CNN_1D=1.358;DP=77;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=1.512;SOR=1.022 GT:AD:DP:GQ:PL 0/1:46,31:77:99:1270,0,2294 3 52584787 . T C 1744.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;CNN_1D=-2.683;DP=137;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=-0.701;SOR=0.627 GT:AD:DP:GQ:PL 0/1:62,75:137:99:1752,0,1368 3 52610651 . T A 1233.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;CNN_1D=-4.356;DP=154;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=0.815;SOR=0.568 GT:AD:DP:GQ:PL 0/1:94,59:153:99:1241,0,2085 3 52643685 . T C 1510.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;CNN_1D=-3.792;DP=140;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-0.102;SOR=0.819 GT:AD:DP:GQ:PL 0/1:73,67:140:99:1518,0,1758 3 52676065 . C T 325.07 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;CNN_1D=-1.680;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=1.015;SOR=0.892 GT:AD:DP:GQ:PL 0/1:24,27:51:99:550,0,497 3 52721305 . G A 752.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;CNN_1D=-2.532;DP=107;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-0.593;SOR=0.718 GT:AD:DP:GQ:PL 0/1:67,40:107:99:760,0,1489 3 52727257 . G A 1124.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.985;CNN_1D=-1.683;DP=108;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.418;SOR=0.602 GT:AD:DP:GQ:PL 0/1:55,52:107:99:1132,0,1486 3 52740182 . C G 881.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;CNN_1D=-0.973;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.403;SOR=0.606 GT:AD:DP:GQ:PL 0/1:42,42:84:99:889,0,979 3 52780205 . A G 1122.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;CNN_1D=-1.218;DP=98;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.387;SOR=0.909 GT:AD:DP:GQ:PL 0/1:45,52:97:99:1130,0,968 3 52797634 . G C 362.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;CNN_1D=1.586;DP=46;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=-1.083;SOR=0.472 GT:AD:DP:GQ:PL 0/1:27,19:46:99:370,0,638 3 52800284 . T C 1105.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;CNN_1D=-1.275;DP=105;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.336;SOR=0.586 GT:AD:DP:GQ:PL 0/1:57,47:104:99:1113,0,1349 3 52802402 . A C 1639.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;CNN_1D=-1.554;DP=123;ExcessHet=3.0103;FS=4.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=0.433;SOR=0.377 GT:AD:DP:GQ:PL 0/1:54,69:123:99:1647,0,1231 3 52853401 . C T 825.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;CNN_1D=-1.250;DP=92;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-1.170;SOR=0.510 GT:AD:DP:GQ:PL 0/1:52,40:92:99:833,0,1279 3 52867715 . G C 2656.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.365;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.87;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2670,276,0 3 53125922 . T C 3001.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.407;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.58;SOR=1.222 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3015,314,0 3 53222761 . C T 3030.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;CNN_1D=1.467;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=-0.139;SOR=0.903 GT:AD:DP:GQ:PL 1/1:2,113:115:99:3044,295,0 3 53223927 . C G 4020.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.820;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.92;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4034,432,0 3 53224002 . T C 3803.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.803;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3817,387,0 3 53324819 . ATGGCAC A 1562.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.102;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.74;SOR=1.675 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1576,106,0 3 53700550 . T C 1022.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;CNN_1D=-1.302;DP=103;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-0.754;SOR=0.610 GT:AD:DP:GQ:PL 0/1:55,48:103:99:1030,0,1274 3 53769479 . C T 3640.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.858;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.66;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3654,381,0 3 53856653 . C T 588.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;CNN_1D=0.994;DP=61;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.562;SOR=0.544 GT:AD:DP:GQ:PL 0/1:35,26:61:99:596,0,798 3 53857803 . A C 2082.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.091;CNN_1D=2.799;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.03;ReadPosRankSum=0.304;SOR=0.453 GT:AD:DP:GQ:PL 1/1:3,77:80:99:2096,153,0 3 53857917 . T G 572.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;CNN_1D=1.040;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=0.112;SOR=0.639 GT:AD:DP:GQ:PL 0/1:30,27:57:99:580,0,768 3 53883722 . C G 1065.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;CNN_1D=-2.905;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=0.292;SOR=0.639 GT:AD:DP:GQ:PL 0/1:63,52:115:99:1073,0,1441 3 53905308 . T C 1236.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.921;CNN_1D=-2.632;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=2.490;SOR=0.676 GT:AD:DP:GQ:PL 0/1:71,51:122:99:1244,0,1711 3 53906513 . G A 1359.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;CNN_1D=0.276;DP=102;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=-1.061;SOR=0.597 GT:AD:DP:GQ:PL 0/1:43,59:102:99:1367,0,868 3 53910117 . G GA 887.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;CNN_1D=-2.177;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=2.370;SOR=0.733 GT:AD:DP:GQ:PL 0/1:45,48:93:99:895,0,1976 3 53911783 . A G 814.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;CNN_1D=0.451;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.439;SOR=0.703 GT:AD:DP:GQ:PL 0/1:44,34:78:99:822,0,1117 3 53914093 . G A 942.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;CNN_1D=-1.364;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.340;SOR=0.623 GT:AD:DP:GQ:PL 0/1:48,44:92:99:950,0,1087 3 54354510 . T C 3673.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.286;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.25;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3687,390,0 3 54798258 . G A 1652.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;CNN_1D=-2.300;DP=128;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-1.504;SOR=0.519 GT:AD:DP:GQ:PL 0/1:55,72:127:99:1660,0,1232 3 54880461 . A G 2062.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;CNN_1D=3.786;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.49;ReadPosRankSum=0.046;SOR=0.223 GT:AD:DP:GQ:PL 1/1:1,74:75:99:2076,200,0 3 56591278 . T TGGGGTAAGCA 5774.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;CNN_1D=-12.818;DP=307;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.928;QD=20.41;ReadPosRankSum=0.865;SOR=0.870 GT:AD:DP:GQ:PL 0/1:132,151:283:99:5782,0,2794 3 56597954 . C T 1289.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;CNN_1D=-1.328;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=0.592;SOR=0.660 GT:AD:DP:GQ:PL 0/1:54,53:107:99:1297,0,1220 3 56627048 . A G 782.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;CNN_1D=2.261;DP=63;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=0.876;SOR=0.755 GT:AD:DP:GQ:PL 0/1:29,34:63:99:790,0,601 3 56627598 . A G 2914.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.924;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.23;SOR=0.830 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2928,320,0 3 56628031 . G A 1257.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;CNN_1D=-2.568;DP=134;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=0.439;SOR=0.557 GT:AD:DP:GQ:PL 0/1:74,60:134:99:1265,0,1692 3 56650012 . G C 395.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;CNN_1D=-0.042;DP=61;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-0.639;SOR=1.292 GT:AD:DP:GQ:PL 0/1:42,19:61:99:403,0,1006 3 56650054 . T TCTC 345.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.873;CNN_1D=-3.275;DP=48;ExcessHet=3.0103;FS=14.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-0.919;SOR=3.036 GT:AD:DP:GQ:PL 0/1:36,11:47:99:353,0,1833 3 56658871 . T C 489.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;CNN_1D=-0.232;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=1.827;SOR=0.765 GT:AD:DP:GQ:PL 0/1:48,27:75:99:497,0,1152 3 56667682 . G C 1324.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;CNN_1D=-3.481;DP=137;ExcessHet=3.0103;FS=6.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=1.827;SOR=0.984 GT:AD:DP:GQ:PL 0/1:81,55:136:99:1332,0,2008 3 56716922 . T G 749.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;CNN_1D=1.336;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.437;SOR=0.580 GT:AD:DP:GQ:PL 0/1:32,32:64:99:757,0,778 3 56763316 . G A 1147.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;CNN_1D=0.039;DP=90;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=0.722;SOR=0.586 GT:AD:DP:GQ:PL 0/1:38,51:89:99:1155,0,803 3 56763328 . T C 1323.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;CNN_1D=-0.260;DP=101;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=1.189;SOR=0.605 GT:AD:DP:GQ:PL 0/1:45,56:101:99:1331,0,1034 3 56763525 . A G 1380.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;CNN_1D=-3.539;DP=138;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.990;SOR=0.807 GT:AD:DP:GQ:PL 0/1:76,61:137:99:1388,0,1708 3 56763619 . A G 1130.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;CNN_1D=-1.928;DP=114;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-1.787;SOR=0.567 GT:AD:DP:GQ:PL 0/1:61,53:114:99:1138,0,1333 3 56766435 . C G 1084.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;CNN_1D=-0.924;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=0.737;SOR=0.702 GT:AD:DP:GQ:PL 0/1:52,46:98:99:1092,0,1157 3 56807854 . TA T 229.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;CNN_1D=-0.835;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-1.551;SOR=0.591 GT:AD:DP:GQ:PL 0/1:25,15:40:99:237,0,501 3 57132200 . A G 3593.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.373;CNN_1D=2.989;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.45;ReadPosRankSum=1.498;SOR=0.230 GT:AD:DP:GQ:PL 1/1:1,117:118:99:3607,316,0 3 57138419 . G A 2481.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.885;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.97;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2495,276,0 3 57139972 . A G 3146.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.265;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.84;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3160,339,0 3 57542173 . C T 2992.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.124;CNN_1D=2.912;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.05;ReadPosRankSum=1.686;SOR=0.753 GT:AD:DP:GQ:PL 1/1:2,101:103:99:3006,259,0 3 58112440 . A G 1294.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;CNN_1D=-0.719;DP=99;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-0.325;SOR=0.522 GT:AD:DP:GQ:PL 0/1:40,59:99:99:1302,0,818 3 58186719 . C A 986.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;CNN_1D=-0.427;DP=90;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=0.283;SOR=0.606 GT:AD:DP:GQ:PL 0/1:44,46:90:99:994,0,1014 3 58196639 . C T 2688.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.459;CNN_1D=2.269;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.60;ReadPosRankSum=-1.567;SOR=0.360 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2702,247,0 3 58351660 . C CT 721.09 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;CNN_1D=-0.293;DP=65;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=0.117;SOR=0.278 GT:AD:DP:GQ:PL 0/1:11,43:54:58:705,0,58 3 58416538 . T C 4245.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.007;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.30;SOR=0.720 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4259,449,0 3 58512237 . A G 1275.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;CNN_1D=-2.253;DP=115;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.868;SOR=0.810 GT:AD:DP:GQ:PL 0/1:62,52:114:99:1283,0,1434 3 58512285 . T C 1654.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;CNN_1D=-2.710;DP=135;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=0.240;SOR=0.778 GT:AD:DP:GQ:PL 0/1:65,70:135:99:1662,0,1482 3 58552329 . C G 1272.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;CNN_1D=-3.574;DP=132;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.165;SOR=0.596 GT:AD:DP:GQ:PL 0/1:75,57:132:99:1280,0,1815 3 58572577 . C G 995.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;CNN_1D=-2.761;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.235;SOR=0.648 GT:AD:DP:GQ:PL 0/1:59,49:108:99:1003,0,1360 3 58572625 . G A 1095.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;CNN_1D=-2.607;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=-0.550;SOR=0.662 GT:AD:DP:GQ:PL 0/1:61,48:109:99:1103,0,1366 3 61975382 . T C 1237.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;CNN_1D=-1.132;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=2.067;SOR=0.698 GT:AD:DP:GQ:PL 0/1:57,53:110:99:1245,0,1241 3 62189189 . G A 1931.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;CNN_1D=-2.761;DP=138;ExcessHet=3.0103;FS=3.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=0.584;SOR=0.972 GT:AD:DP:GQ:PL 0/1:63,75:138:99:1939,0,1452 3 62189437 . G C 3129.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;CNN_1D=-9.722;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=-1.129;SOR=0.674 GT:AD:DP:GQ:PL 0/1:119,132:251:99:3137,0,2710 3 62229553 . C T 1794.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.426;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.60;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1808,195,0 3 62358427 . C A 2248.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;CNN_1D=-5.761;DP=184;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-0.056;SOR=0.577 GT:AD:DP:GQ:PL 0/1:88,95:183:99:2256,0,1999 3 62556622 . A G 1209.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.490;CNN_1D=-1.197;DP=97;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=-1.498;SOR=0.817 GT:AD:DP:GQ:PL 0/1:48,49:97:99:1217,0,1031 3 64133350 . A G 4020.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.933;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.51;SOR=1.147 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4034,423,0 3 64587818 . G A 1736.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;CNN_1D=-5.300;DP=169;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.545;SOR=0.578 GT:AD:DP:GQ:PL 0/1:90,79:169:99:1744,0,2137 3 65607637 . A G 2762.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.625;CNN_1D=1.079;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=-0.599;SOR=0.916 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2776,276,0 3 66287056 . G A 1157.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;CNN_1D=-1.493;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.056;SOR=0.726 GT:AD:DP:GQ:PL 0/1:49,54:103:99:1165,0,1004 3 66419956 . C T 3995.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.397;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.55;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4009,434,0 3 66430870 . G A 4132.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.484;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.51;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4146,420,0 3 66433676 . A G 4474.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.399;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.64;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4488,438,0 3 66550756 . G C 1183.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.072;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.72;SOR=1.302 GT:AD:DP:GQ:PL 1/1:0,27:27:81:1197,81,0 3 66550762 . G C 1150.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.486;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.56;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,25:25:78:1164,78,0 3 67411103 . C T 986.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;CNN_1D=-0.303;DP=96;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=0.430;SOR=0.797 GT:AD:DP:GQ:PL 0/1:51,45:96:99:994,0,1197 3 67411166 . A G 860.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;CNN_1D=0.447;DP=70;ExcessHet=3.0103;FS=2.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-1.358;SOR=1.059 GT:AD:DP:GQ:PL 0/1:34,36:70:99:868,0,838 3 67548726 . AAAG A 1391.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;CNN_1D=1.085;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.77;ReadPosRankSum=0.610;SOR=0.587 GT:AD:DP:GQ:PL 0/1:31,36:67:99:1399,0,1403 3 69038088 . A G 1143.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.076;CNN_1D=3.745;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.98;ReadPosRankSum=1.261;SOR=0.446 GT:AD:DP:GQ:PL 1/1:1,43:44:95:1157,95,0 3 69082708 . C G 1546.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.459;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.63;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1560,162,0 3 69112658 . C CA 42.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;CNN_1D=-0.875;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.714;SOR=1.022 GT:AD:DP:GQ:PL 0/1:20,5:25:50:50,0,409 3 69230061 . G A 2984.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.219;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.84;SOR=1.345 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2998,299,0 3 69230801 . G A 3613.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.420;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.23;SOR=1.092 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3627,382,0 3 69245454 . T C 3752.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.463;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.59;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3766,408,0 3 69246152 . A G 2644.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.887;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.38;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2658,270,0 3 69271032 . G A 956.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.889;CNN_1D=-1.144;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=0.894;SOR=0.737 GT:AD:DP:GQ:PL 0/1:48,47:95:99:964,0,1192 3 69299185 . C A 872.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;CNN_1D=-0.591;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.563;SOR=0.665 GT:AD:DP:GQ:PL 0/1:49,41:90:99:880,0,1195 3 73111368 . T C 1031.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;CNN_1D=0.699;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=1.667;SOR=0.739 GT:AD:DP:GQ:PL 0/1:39,40:79:99:1039,0,929 3 73111481 . C CA 1728.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;CNN_1D=-0.557;DP=108;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.31;ReadPosRankSum=-1.066;SOR=0.709 GT:AD:DP:GQ:PL 0/1:51,55:106:99:1736,0,1590 3 73111809 . A G 1861.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;CNN_1D=-4.165;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-0.272;SOR=0.707 GT:AD:DP:GQ:PL 0/1:73,78:151:99:1869,0,1710 3 73111973 . A G 1653.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;CNN_1D=-2.036;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.67;ReadPosRankSum=0.669;SOR=0.671 GT:AD:DP:GQ:PL 0/1:51,70:121:99:1661,0,1067 3 73111998 . C T 1488.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;CNN_1D=-0.058;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=1.804;SOR=0.619 GT:AD:DP:GQ:PL 0/1:44,59:103:99:1496,0,1070 3 73114003 . T C 506.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;CNN_1D=1.225;DP=59;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.015;SOR=0.395 GT:AD:DP:GQ:PL 0/1:33,26:59:99:514,0,758 3 73437112 . A G 1316.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.958;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.42;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1330,144,0 3 73437225 . T TA 279.30 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.959;CNN_1D=0.816;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.48;ReadPosRankSum=-1.204;SOR=1.473 GT:AD:DP:GQ:PL 1/1:1,12:13:11:293,11,0 3 73482783 . G A 1434.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;CNN_1D=1.356;DP=79;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.16;ReadPosRankSum=-1.188;SOR=1.115 GT:AD:DP:GQ:PL 0/1:41,38:79:99:1442,0,2177 3 73651621 . TA T 539.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;CNN_1D=0.119;DP=63;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=0.788;SOR=1.027 GT:AD:DP:GQ:PL 0/1:31,26:57:99:547,0,611 3 73673578 . G C 356.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;CNN_1D=3.126;DP=21;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.98;ReadPosRankSum=-0.711;SOR=0.643 GT:AD:DP:GQ:PL 0/1:7,14:21:99:364,0,156 3 74413676 . T C 713.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;CNN_1D=0.845;DP=67;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.411;SOR=0.830 GT:AD:DP:GQ:PL 0/1:35,31:66:99:721,0,861 3 75713555 . G A 626.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.840;CNN_1D=-16.117;DP=293;ExcessHet=3.0103;FS=10.075;MLEAC=1;MLEAF=0.500;MQ=50.63;MQRankSum=-8.268;QD=2.17;ReadPosRankSum=-4.245;SOR=1.403 GT:AD:DP:GQ:PL 0/1:239,50:289:99:634,0,6736 3 75713561 . C T 718.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.784;CNN_1D=-16.117;DP=335;ExcessHet=3.0103;FS=19.889;MLEAC=1;MLEAF=0.500;MQ=50.56;MQRankSum=-5.633;QD=2.15;ReadPosRankSum=-1.944;SOR=2.155 GT:AD:DP:GQ:PL 0/1:298,37:335:99:726,0,12481 3 75713563 . C G 706.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.016;CNN_1D=-16.117;DP=341;ExcessHet=3.0103;FS=16.256;MLEAC=1;MLEAF=0.500;MQ=50.28;MQRankSum=-5.493;QD=2.07;ReadPosRankSum=-2.432;SOR=1.820 GT:AD:DP:GQ:PL 0/1:301,40:341:99:714,0,12575 3 75713566 . T C 5345.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.566;CNN_1D=-16.118;DP=360;ExcessHet=3.0103;FS=40.818;MLEAC=1;MLEAF=0.500;MQ=50.26;MQRankSum=-15.980;QD=14.89;ReadPosRankSum=-4.332;SOR=1.911 GT:AD:DP:GQ:PL 0/1:180,179:359:99:5353,0,3400 3 75713618 . A T 941.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;CNN_1D=-16.118;DP=636;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=53.15;MQRankSum=-3.073;QD=1.48;ReadPosRankSum=0.944;SOR=0.870 GT:AD:DP:GQ:PL 0/1:535,100:635:99:949,0,13094 3 75713654 . G A 2754.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;CNN_1D=-16.118;DP=715;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-2.547;QD=3.86;ReadPosRankSum=2.803;SOR=0.813 GT:AD:DP:GQ:PL 0/1:593,121:714:99:2762,0,16164 3 75713669 . G A 2941.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;CNN_1D=-16.118;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.23;MQRankSum=-2.394;QD=4.26;ReadPosRankSum=2.862;SOR=0.728 GT:AD:DP:GQ:PL 0/1:569,122:691:99:2949,0,13694 3 75713963 . C T 224.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.205;CNN_1D=-16.118;DP=220;ExcessHet=3.0103;FS=27.442;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-14.744;QD=1.03;ReadPosRankSum=-1.429;SOR=3.050 GT:AD:DP:GQ:PL 0/1:199,20:219:99:232,0,9158 3 75713977 . A G 246.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.367;CNN_1D=-16.117;DP=228;ExcessHet=3.0103;FS=11.790;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-14.697;QD=1.09;ReadPosRankSum=-0.506;SOR=1.817 GT:AD:DP:GQ:PL 0/1:206,21:227:99:254,0,9513 3 75713980 . T G 322.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.925;CNN_1D=-16.115;DP=237;ExcessHet=3.0103;FS=10.368;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-13.217;QD=1.37;ReadPosRankSum=-1.309;SOR=1.598 GT:AD:DP:GQ:PL 0/1:211,25:236:99:330,0,9527 3 75714298 . A G 7909.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;CNN_1D=-16.118;DP=380;ExcessHet=3.0103;FS=3.663;MLEAC=1;MLEAF=0.500;MQ=51.19;MQRankSum=-11.947;QD=20.81;ReadPosRankSum=1.026;SOR=0.905 GT:AD:DP:GQ:PL 0/1:112,268:380:99:7917,0,1950 3 75714311 . G A 1907.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;CNN_1D=-16.118;DP=389;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.500;MQ=51.38;MQRankSum=-7.599;QD=4.90;ReadPosRankSum=1.588;SOR=0.850 GT:AD:DP:GQ:PL 0/1:276,113:389:99:1915,0,9082 3 75714337 . T G 8132.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;CNN_1D=-16.118;DP=388;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.500;MQ=51.26;MQRankSum=-11.412;QD=20.96;ReadPosRankSum=1.670;SOR=0.502 GT:AD:DP:GQ:PL 0/1:92,296:388:99:8140,0,1449 3 75714345 . G T 1061.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;CNN_1D=-15.996;DP=381;ExcessHet=3.0103;FS=6.616;MLEAC=1;MLEAF=0.500;MQ=51.35;MQRankSum=1.683;QD=2.79;ReadPosRankSum=2.610;SOR=1.048 GT:AD:DP:GQ:PL 0/1:297,84:381:99:1069,0,9263 3 75714674 . G A 1786.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;CNN_1D=-12.542;DP=419;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=9.759;QD=4.26;ReadPosRankSum=1.099;SOR=0.797 GT:AD:DP:GQ:PL 0/1:310,109:419:99:1794,0,7436 3 75714702 . A G 12473.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;CNN_1D=-16.118;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.11;MQRankSum=-9.438;QD=24.55;ReadPosRankSum=1.529;SOR=0.647 GT:AD:DP:GQ:PL 0/1:103,405:508:99:12481,0,1412 3 75714709 . G T 2659.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;CNN_1D=-16.118;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.91;MQRankSum=-18.023;QD=5.06;ReadPosRankSum=3.542;SOR=0.745 GT:AD:DP:GQ:PL 0/1:362,164:526:99:2667,0,10597 3 75714771 . A G 2340.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;CNN_1D=-16.118;DP=597;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-17.115;QD=3.92;ReadPosRankSum=-0.477;SOR=0.738 GT:AD:DP:GQ:PL 0/1:453,144:597:99:2348,0,16632 3 75714788 . A C 7199.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;CNN_1D=-16.118;DP=572;ExcessHet=3.0103;FS=2.569;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=-18.037;QD=12.59;ReadPosRankSum=-3.087;SOR=0.540 GT:AD:DP:GQ:PL 0/1:368,204:572:99:7207,0,14160 3 75714805 . TG T 7202.60 CNN_1D_INDEL_Tranche_99.40_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;CNN_1D=-16.118;DP=558;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=1.149;QD=13.05;ReadPosRankSum=2.964;SOR=0.791 GT:AD:DP:GQ:PL 0/1:360,192:552:99:7210,0,15257 3 75714807 . G A 7262.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359;CNN_1D=-16.118;DP=553;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=54.62;MQRankSum=0.730;QD=13.13;ReadPosRankSum=2.845;SOR=0.810 GT:AD:DP:GQ:PL 0/1:358,195:553:99:7270,0,15015 3 75714809 . C T 6518.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;CNN_1D=-16.118;DP=553;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-16.365;QD=11.79;ReadPosRankSum=-4.985;SOR=0.624 GT:AD:DP:GQ:PL 0/1:380,173:553:99:6526,0,16117 3 75714819 . G A 5772.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.755;CNN_1D=-16.118;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-16.199;QD=10.67;ReadPosRankSum=-5.093;SOR=0.683 GT:AD:DP:GQ:PL 0/1:382,159:541:99:5780,0,16318 3 75714824 . AG A 5742.60 CNN_1D_INDEL_Tranche_99.40_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=2.845;CNN_1D=-16.118;DP=545;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=54.82;MQRankSum=-15.932;QD=10.54;ReadPosRankSum=-4.966;SOR=0.594 GT:AD:DP:GQ:PL 0/1:389,156:545:99:5750,0,16309 3 75714825 . G A 1812.04 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;CNN_1D=-16.118;DP=536;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=54.86;MQRankSum=-14.221;QD=4.65;ReadPosRankSum=0.378;SOR=0.600 GT:AD:DP:GQ:PL 0/1:191,199:390:99:7982,0,7607 3 75714831 . G A 5401.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.679;CNN_1D=-16.118;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=-15.648;QD=9.86;ReadPosRankSum=-3.969;SOR=0.654 GT:AD:DP:GQ:PL 0/1:396,152:548:99:5409,0,16639 3 75714835 . C T 5266.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;CNN_1D=-16.118;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-14.986;QD=9.94;ReadPosRankSum=-4.277;SOR=0.662 GT:AD:DP:GQ:PL 0/1:381,149:530:99:5274,0,16363 3 75714840 . A G 14114.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.293;CNN_1D=-16.118;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-17.284;QD=27.04;ReadPosRankSum=-2.428;SOR=0.720 GT:AD:DP:GQ:PL 0/1:180,342:522:99:14122,0,6851 3 75714843 . T A 7207.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;CNN_1D=-16.118;DP=533;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-3.848;QD=13.52;ReadPosRankSum=2.259;SOR=0.619 GT:AD:DP:GQ:PL 0/1:342,191:533:99:7215,0,14310 3 75714853 . G A 6916.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;CNN_1D=-16.118;DP=544;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=55.19;MQRankSum=-4.636;QD=12.88;ReadPosRankSum=1.397;SOR=0.625 GT:AD:DP:GQ:PL 0/1:345,192:537:99:6924,0,13988 3 75714898 . G A 5328.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486;CNN_1D=-16.118;DP=615;ExcessHet=3.0103;FS=3.361;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=-6.461;QD=8.66;ReadPosRankSum=1.630;SOR=0.962 GT:AD:DP:GQ:PL 0/1:378,237:615:99:5336,0,11824 3 75714917 . G A 5500.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;CNN_1D=-16.118;DP=682;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=54.97;MQRankSum=-9.217;QD=8.07;ReadPosRankSum=1.971;SOR=0.547 GT:AD:DP:GQ:PL 0/1:511,171:682:99:5508,0,21699 3 75714929 . G A 5653.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;CNN_1D=-16.118;DP=717;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=-9.785;QD=7.89;ReadPosRankSum=1.333;SOR=0.668 GT:AD:DP:GQ:PL 0/1:545,172:717:99:5661,0,23004 3 75714950 . C A 5316.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;CNN_1D=-16.118;DP=735;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.43;MQRankSum=-9.904;QD=7.23;ReadPosRankSum=-1.396;SOR=0.711 GT:AD:DP:GQ:PL 0/1:560,175:735:99:5324,0,22577 3 75714976 . C T 8468.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-6.583;CNN_1D=-16.118;DP=738;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.31;MQRankSum=-3.096;QD=11.48;ReadPosRankSum=4.918;SOR=0.693 GT:AD:DP:GQ:PL 0/1:368,370:738:99:8476,0,9924 3 75714980 . C A 2693.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=5.632;CNN_1D=-16.118;DP=756;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.19;MQRankSum=-9.961;QD=3.57;ReadPosRankSum=-1.806;SOR=0.702 GT:AD:DP:GQ:PL 0/1:589,165:754:99:2701,0,20689 3 75715033 . T C 3839.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=4.077;CNN_1D=-16.118;DP=750;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=51.81;MQRankSum=-9.740;QD=5.12;ReadPosRankSum=2.189;SOR=0.771 GT:AD:DP:GQ:PL 0/1:553,197:750:99:3847,0,13814 3 75715087 . T A 3892.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.989;CNN_1D=-16.118;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.70;MQRankSum=-18.707;QD=6.56;ReadPosRankSum=-1.305;SOR=0.714 GT:AD:DP:GQ:PL 0/1:421,172:593:99:3900,0,12791 3 75715099 . T A 3843.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.763;CNN_1D=-16.118;DP=608;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=52.68;MQRankSum=-17.181;QD=6.33;ReadPosRankSum=-1.265;SOR=0.783 GT:AD:DP:GQ:PL 0/1:420,187:607:99:3851,0,12720 3 75715118 . G A 6035.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;CNN_1D=-16.118;DP=613;ExcessHet=3.0103;FS=2.761;MLEAC=1;MLEAF=0.500;MQ=53.56;MQRankSum=-0.208;QD=9.85;ReadPosRankSum=2.318;SOR=0.906 GT:AD:DP:GQ:PL 0/1:434,179:613:99:6043,0,17683 3 75715124 . C T 5949.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;CNN_1D=-16.118;DP=613;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.500;MQ=53.75;MQRankSum=0.017;QD=9.71;ReadPosRankSum=1.545;SOR=0.958 GT:AD:DP:GQ:PL 0/1:438,175:613:99:5957,0,17647 3 75715173 . C T 3364.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850;CNN_1D=-16.112;DP=467;ExcessHet=3.0103;FS=4.117;MLEAC=1;MLEAF=0.500;MQ=55.40;MQRankSum=1.889;QD=7.20;ReadPosRankSum=-3.661;SOR=1.025 GT:AD:DP:GQ:PL 0/1:360,107:467:99:3372,0,14670 3 75715174 . T G 3361.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.846;CNN_1D=-16.114;DP=456;ExcessHet=3.0103;FS=4.124;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=1.860;QD=7.37;ReadPosRankSum=-4.139;SOR=1.062 GT:AD:DP:GQ:PL 0/1:350,106:456:99:3369,0,14692 3 75715181 . G A 3174.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;CNN_1D=-16.114;DP=453;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=55.58;MQRankSum=1.268;QD=7.01;ReadPosRankSum=-3.846;SOR=1.036 GT:AD:DP:GQ:PL 0/1:352,101:453:99:3182,0,14362 3 75715199 . T G 7858.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;CNN_1D=-16.102;DP=376;ExcessHet=3.0103;FS=5.458;MLEAC=1;MLEAF=0.500;MQ=55.79;MQRankSum=-8.471;QD=20.90;ReadPosRankSum=0.393;SOR=0.478 GT:AD:DP:GQ:PL 0/1:173,203:376:99:7866,0,6608 3 75715202 . G C 7800.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490;CNN_1D=-16.057;DP=365;ExcessHet=3.0103;FS=5.550;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-8.141;QD=21.37;ReadPosRankSum=0.632;SOR=0.485 GT:AD:DP:GQ:PL 0/1:169,196:365:99:7808,0,6614 3 75779760 . G T 242.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;CNN_1D=-16.008;DP=356;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-1.369;SOR=1.047 GT:AD:DP:GQ:PL 0/1:312,44:356:99:250,0,13521 3 75779762 . G T 2224.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;CNN_1D=-15.385;DP=351;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-2.823;SOR=0.752 GT:AD:DP:GQ:PL 0/1:272,79:351:99:2232,0,11840 3 75779769 . C G 6572.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.362;CNN_1D=-11.805;DP=327;ExcessHet=3.0103;FS=10.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.10;ReadPosRankSum=-1.896;SOR=1.184 GT:AD:DP:GQ:PL 0/1:144,183:327:99:6580,0,3126 3 75779777 . TA T 3980.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.833;CNN_1D=-13.914;DP=300;ExcessHet=3.0103;FS=7.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.17;ReadPosRankSum=0.283;SOR=1.090 GT:AD:DP:GQ:PL 0/1:149,132:281:99:3988,0,4363 3 75781212 . TC T 195.60 CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;CNN_1D=-16.118;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.300;QD=0.39;ReadPosRankSum=0.377;SOR=0.653 GT:AD:DP:GQ:PL 0/1:468,40:508:99:203,0,20787 3 75781222 . C T 8846.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;CNN_1D=-16.081;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.757;QD=20.82;ReadPosRankSum=-2.642;SOR=0.716 GT:AD:DP:GQ:PL 0/1:156,269:425:99:8854,0,3081 3 75781229 . G C 56.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.370;CNN_1D=-16.117;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.283;QD=0.12;ReadPosRankSum=-0.978;SOR=0.863 GT:AD:DP:GQ:PL 0/1:424,32:456:64:64,0,18924 3 75781243 . T C 3623.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.540;CNN_1D=-16.107;DP=429;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.399;QD=8.47;ReadPosRankSum=1.871;SOR=0.590 GT:AD:DP:GQ:PL 0/1:284,144:428:99:3631,0,10542 3 75781257 . T C 6570.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;CNN_1D=-14.482;DP=389;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.941;QD=18.94;ReadPosRankSum=0.990;SOR=0.816 GT:AD:DP:GQ:PL 0/1:147,200:347:99:6578,0,6247 3 75781263 . T C 9309.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.990;CNN_1D=-12.277;DP=362;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.740;QD=25.79;ReadPosRankSum=1.084;SOR=0.820 GT:AD:DP:GQ:PL 0/1:129,232:361:99:9317,0,5428 3 75781272 . C A 1913.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;CNN_1D=-14.864;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.559;QD=5.51;ReadPosRankSum=0.938;SOR=0.657 GT:AD:DP:GQ:PL 0/1:266,81:347:99:1921,0,11619 3 75786019 . G C 2936.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;CNN_1D=-8.595;DP=230;ExcessHet=3.0103;FS=3.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=-0.865;SOR=0.929 GT:AD:DP:GQ:PL 0/1:148,82:230:99:2944,0,6363 3 75786020 . G A 2809.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;CNN_1D=-7.872;DP=233;ExcessHet=3.0103;FS=3.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-0.515;SOR=0.943 GT:AD:DP:GQ:PL 0/1:153,80:233:99:2817,0,6435 3 75786031 . A C 828.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;CNN_1D=-12.433;DP=272;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.547;SOR=0.589 GT:AD:DP:GQ:PL 0/1:234,38:272:99:836,0,10755 3 75786035 . G GA 3534.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;CNN_1D=-14.291;DP=296;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=-1.457;SOR=0.772 GT:AD:DP:GQ:PL 0/1:194,98:292:99:3542,0,8056 3 75786036 . A C 830.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;CNN_1D=-14.367;DP=308;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.828;SOR=0.579 GT:AD:DP:GQ:PL 0/1:267,40:307:99:838,0,11555 3 75786041 . AG A 1276.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;CNN_1D=-15.902;DP=322;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=1.033;SOR=0.831 GT:AD:DP:GQ:PL 0/1:248,59:307:99:1284,0,9590 3 75786042 . G A 2496.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;CNN_1D=-13.805;DP=322;ExcessHet=3.0103;FS=2.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-1.649;SOR=0.895 GT:AD:DP:GQ:PL 0/1:139,140:279:99:4756,0,5632 3 75786059 . C T 9006.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;CNN_1D=-13.189;DP=387;ExcessHet=3.0103;FS=5.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.27;ReadPosRankSum=-1.226;SOR=0.950 GT:AD:DP:GQ:PL 0/1:161,226:387:99:9014,0,5277 3 75786060 . A G 3670.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;CNN_1D=-15.809;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.624;SOR=0.689 GT:AD:DP:GQ:PL 0/1:243,152:395:99:3678,0,9993 3 75786071 . C A 2871.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;CNN_1D=-16.109;DP=444;ExcessHet=3.0103;FS=4.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-0.565;SOR=1.031 GT:AD:DP:GQ:PL 0/1:352,92:444:99:2879,0,15009 3 75786073 . C G 264.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;CNN_1D=-16.117;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.769;SOR=0.726 GT:AD:DP:GQ:PL 0/1:394,56:450:99:272,0,14601 3 75786079 . C T 2930.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;CNN_1D=-16.113;DP=460;ExcessHet=3.0103;FS=2.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-0.584;SOR=1.010 GT:AD:DP:GQ:PL 0/1:361,99:460:99:2938,0,15243 3 75786080 . G A 8298.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;CNN_1D=-15.984;DP=463;ExcessHet=3.0103;FS=2.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.92;ReadPosRankSum=-0.052;SOR=0.922 GT:AD:DP:GQ:PL 0/1:180,283:463:99:8306,0,4529 3 75786132 . T C 350.60 CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;CNN_1D=-16.118;DP=526;ExcessHet=3.0103;FS=5.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.043;SOR=1.282 GT:AD:DP:GQ:PL 0/1:433,74:507:99:358,0,11491 3 75786163 . C T 1201.60 CNN_1D_SNP_Tranche_99.95_100.00 AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;CNN_1D=-16.118;DP=502;ExcessHet=3.0103;FS=4.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-1.261;SOR=1.031 GT:AD:DP:GQ:PL 0/1:386,97:483:99:1209,0,10011 3 75786202 . T C 522.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.727;CNN_1D=-16.117;DP=461;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-1.144;SOR=0.816 GT:AD:DP:GQ:PL 0/1:413,47:460:99:530,0,17325 3 75786203 . G A 507.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;CNN_1D=-16.117;DP=461;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-1.191;SOR=0.810 GT:AD:DP:GQ:PL 0/1:413,47:460:99:515,0,17454 3 75786211 . A G 1649.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.955;CNN_1D=-16.113;DP=449;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=2.064;SOR=0.781 GT:AD:DP:GQ:PL 0/1:342,99:441:99:1657,0,11482 3 75786221 . G A 519.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;CNN_1D=-16.108;DP=423;ExcessHet=3.0103;FS=3.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-1.667;SOR=0.590 GT:AD:DP:GQ:PL 0/1:378,44:422:99:527,0,16034 3 75786225 . G A 3474.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030;CNN_1D=-16.069;DP=418;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.237;SOR=1.020 GT:AD:DP:GQ:PL 0/1:271,146:417:99:3482,0,8738 3 75786243 . C T 3329.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;CNN_1D=-15.496;DP=376;ExcessHet=3.0103;FS=0.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.512;SOR=0.732 GT:AD:DP:GQ:PL 0/1:278,98:376:99:3337,0,11534 3 75786245 . T A 3341.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;CNN_1D=-15.331;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.844;SOR=0.675 GT:AD:DP:GQ:PL 0/1:274,99:373:99:3349,0,11394 3 75786251 . G A 399.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;CNN_1D=-15.936;DP=369;ExcessHet=3.0103;FS=7.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.402;SOR=0.716 GT:AD:DP:GQ:PL 0/1:331,38:369:99:407,0,13879 3 75786252 . G T 4991.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;CNN_1D=-14.258;DP=363;ExcessHet=3.0103;FS=4.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.436;SOR=0.486 GT:AD:DP:GQ:PL 0/1:229,134:363:99:4999,0,9247 3 75786256 . T A 3257.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;CNN_1D=-15.060;DP=363;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-0.681;SOR=0.595 GT:AD:DP:GQ:PL 0/1:266,97:363:99:3265,0,10961 3 75786261 . C T 3327.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;CNN_1D=-15.506;DP=358;ExcessHet=3.0103;FS=13.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.456;SOR=1.262 GT:AD:DP:GQ:PL 0/1:250,108:358:99:3335,0,10104 3 75786278 . A C 7231.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.684;CNN_1D=-9.965;DP=317;ExcessHet=3.0103;FS=13.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.81;ReadPosRankSum=-0.642;SOR=1.173 GT:AD:DP:GQ:PL 0/1:142,175:317:99:7239,0,5550 3 75786288 . A G 2272.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.056;CNN_1D=-13.462;DP=302;ExcessHet=3.0103;FS=17.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.589;SOR=1.547 GT:AD:DP:GQ:PL 0/1:227,75:302:99:2280,0,9559 3 75786298 . T C 2310.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.142;CNN_1D=-12.835;DP=287;ExcessHet=3.0103;FS=13.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-1.091;SOR=1.413 GT:AD:DP:GQ:PL 0/1:220,67:287:99:2318,0,9267 3 75786302 . G A 3324.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;CNN_1D=-11.443;DP=284;ExcessHet=3.0103;FS=3.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=0.041;SOR=0.923 GT:AD:DP:GQ:PL 0/1:191,93:284:99:3332,0,8011 3 75786314 . CCTACATTCT C 5949.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.090;CNN_1D=-11.959;DP=290;ExcessHet=3.0103;FS=21.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.52;ReadPosRankSum=0.133;SOR=1.419 GT:AD:DP:GQ:PL 0/1:138,152:290:99:5957,0,5274 3 75786337 . G A 577.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;CNN_1D=-12.467;DP=255;ExcessHet=3.0103;FS=11.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-1.641;SOR=1.674 GT:AD:DP:GQ:PL 0/1:208,42:250:99:585,0,8628 3 75786354 . G A 932.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;CNN_1D=-11.381;DP=236;ExcessHet=3.0103;FS=17.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-2.159;SOR=1.901 GT:AD:DP:GQ:PL 0/1:198,38:236:99:940,0,8191 3 75786379 . T C 3159.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.864;CNN_1D=-6.146;DP=204;ExcessHet=3.0103;FS=8.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=0.456;SOR=1.086 GT:AD:DP:GQ:PL 0/1:118,86:204:99:3167,0,4718 3 75786381 . T C 3130.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;CNN_1D=-5.180;DP=201;ExcessHet=3.0103;FS=8.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=-0.400;SOR=0.456 GT:AD:DP:GQ:PL 0/1:84,117:201:99:3138,0,3219 3 75786385 . C G 3754.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.420;CNN_1D=-4.982;DP=200;ExcessHet=3.0103;FS=9.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.77;ReadPosRankSum=1.281;SOR=1.121 GT:AD:DP:GQ:PL 0/1:103,97:200:99:3762,0,3978 3 75786403 . A T 167.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.912;CNN_1D=-8.421;DP=192;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.272;SOR=1.047 GT:AD:DP:GQ:PL 0/1:175,17:192:99:175,0,7465 3 75786415 . C T 89.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;CNN_1D=-8.772;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-0.277;SOR=0.732 GT:AD:DP:GQ:PL 0/1:173,15:188:97:97,0,7387 3 75786417 . T C 2134.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.535;CNN_1D=-6.181;DP=190;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=-0.188;SOR=0.912 GT:AD:DP:GQ:PL 0/1:125,65:190:99:2142,0,4972 3 75786438 . G A 1839.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.668;CNN_1D=-5.607;DP=181;ExcessHet=3.0103;FS=3.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.562;SOR=0.918 GT:AD:DP:GQ:PL 0/1:131,50:181:99:1847,0,5414 3 75786440 . C T 2312.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;CNN_1D=-6.104;DP=182;ExcessHet=3.0103;FS=4.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-0.531;SOR=0.975 GT:AD:DP:GQ:PL 0/1:119,63:182:99:2320,0,4930 3 75786450 . G A 1739.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.207;CNN_1D=-5.981;DP=178;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-0.452;SOR=0.606 GT:AD:DP:GQ:PL 0/1:130,48:178:99:1747,0,5347 3 75786453 . C T 2102.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.047;CNN_1D=-5.263;DP=178;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=-1.020;SOR=0.631 GT:AD:DP:GQ:PL 0/1:122,56:178:99:2110,0,4928 3 75786469 . G A 1636.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;CNN_1D=-6.091;DP=177;ExcessHet=3.0103;FS=2.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.650;SOR=0.919 GT:AD:DP:GQ:PL 0/1:130,47:177:99:1644,0,5644 3 75786476 . G A 1868.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;CNN_1D=-6.371;DP=179;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-2.189;SOR=0.867 GT:AD:DP:GQ:PL 0/1:126,53:179:99:1876,0,5212 3 75786490 . C G 2021.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;CNN_1D=-5.093;DP=173;ExcessHet=3.0103;FS=7.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-3.229;SOR=1.048 GT:AD:DP:GQ:PL 0/1:117,56:173:99:2029,0,4909 3 75786500 . A G 2057.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;CNN_1D=-5.512;DP=174;ExcessHet=3.0103;FS=4.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=-2.863;SOR=1.036 GT:AD:DP:GQ:PL 0/1:117,57:174:99:2065,0,4990 3 75786501 . T A 2108.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;CNN_1D=-5.345;DP=172;ExcessHet=3.0103;FS=5.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-2.430;SOR=1.148 GT:AD:DP:GQ:PL 0/1:117,55:172:99:2116,0,4861 3 75786515 . G A 2339.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;CNN_1D=-5.609;DP=187;ExcessHet=3.0103;FS=4.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-1.031;SOR=0.941 GT:AD:DP:GQ:PL 0/1:125,62:187:99:2347,0,5137 3 75786518 . A C 2293.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;CNN_1D=-5.719;DP=187;ExcessHet=3.0103;FS=4.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=-0.413;SOR=0.941 GT:AD:DP:GQ:PL 0/1:125,62:187:99:2301,0,5201 3 75786521 . G A 2282.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;CNN_1D=-5.900;DP=192;ExcessHet=3.0103;FS=5.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.132;SOR=0.945 GT:AD:DP:GQ:PL 0/1:127,65:192:99:2290,0,5201 3 75786555 . C CTG 4298.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;CNN_1D=-9.248;DP=222;ExcessHet=3.0103;FS=9.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=0.773;SOR=0.790 GT:AD:DP:GQ:PL 0/1:115,106:221:99:4306,0,4451 3 75786572 . T C 374.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;CNN_1D=-10.521;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-2.744;SOR=0.695 GT:AD:DP:GQ:PL 0/1:202,23:225:99:382,0,8662 3 75786597 . C T 569.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;CNN_1D=-9.810;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.307;SOR=0.653 GT:AD:DP:GQ:PL 0/1:194,28:222:99:577,0,8272 3 75786607 . C T 854.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;CNN_1D=-9.553;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.424;SOR=0.742 GT:AD:DP:GQ:PL 0/1:185,33:218:99:862,0,7792 3 75786610 . T G 944.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;CNN_1D=-9.829;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.366;SOR=0.739 GT:AD:DP:GQ:PL 0/1:185,35:220:99:952,0,7702 3 75786619 . T C 1109.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;CNN_1D=-9.559;DP=222;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.364;SOR=0.888 GT:AD:DP:GQ:PL 0/1:181,41:222:99:1117,0,7625 3 75786623 . G T 3579.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.627;CNN_1D=-6.487;DP=218;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.50;ReadPosRankSum=-0.327;SOR=0.808 GT:AD:DP:GQ:PL 0/1:120,97:217:99:3587,0,4663 3 75786628 . G C 1886.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;CNN_1D=-8.019;DP=218;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=0.974;SOR=0.634 GT:AD:DP:GQ:PL 0/1:141,76:217:99:1894,0,5580 3 75786670 . G A 2071.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.450;CNN_1D=-7.493;DP=213;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=-1.271;SOR=0.717 GT:AD:DP:GQ:PL 0/1:121,89:210:99:2079,0,4142 3 75786681 . G A 4492.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;CNN_1D=-5.233;DP=209;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.81;ReadPosRankSum=-3.228;SOR=0.552 GT:AD:DP:GQ:PL 0/1:81,125:206:99:4500,0,1667 3 75786737 . A T 3002.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;CNN_1D=-6.920;DP=220;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=1.466;SOR=0.765 GT:AD:DP:GQ:PL 0/1:140,80:220:99:3010,0,5534 3 75786740 . C G 1646.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;CNN_1D=-8.655;DP=219;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=0.008;SOR=0.715 GT:AD:DP:GQ:PL 0/1:168,51:219:99:1654,0,7173 3 75786741 . A G 5452.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;CNN_1D=-4.919;DP=223;ExcessHet=3.0103;FS=3.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.45;ReadPosRankSum=0.139;SOR=0.513 GT:AD:DP:GQ:PL 0/1:88,135:223:99:5460,0,3429 3 75786753 . C T 3143.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;CNN_1D=-9.109;DP=244;ExcessHet=3.0103;FS=6.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-1.283;SOR=0.865 GT:AD:DP:GQ:PL 0/1:145,99:244:99:3151,0,5959 3 75786754 . G T 2035.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;CNN_1D=-9.283;DP=247;ExcessHet=3.0103;FS=6.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=0.737;SOR=0.849 GT:AD:DP:GQ:PL 0/1:186,61:247:99:2043,0,7623 3 75786759 . T C 6280.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.810;CNN_1D=-5.319;DP=249;ExcessHet=3.0103;FS=6.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=-0.148;SOR=0.722 GT:AD:DP:GQ:PL 0/1:98,151:249:99:6288,0,3768 3 75786764 . C CT 2182.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.944;CNN_1D=-13.327;DP=256;ExcessHet=3.0103;FS=9.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=0.958;SOR=1.048 GT:AD:DP:GQ:PL 0/1:190,66:256:99:2190,0,7897 3 75786773 . T A 3182.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;CNN_1D=-10.204;DP=272;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-0.153;SOR=0.606 GT:AD:DP:GQ:PL 0/1:183,89:272:99:3190,0,7665 3 75786784 . T C 2390.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.473;CNN_1D=-11.955;DP=287;ExcessHet=3.0103;FS=13.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=1.365;SOR=1.125 GT:AD:DP:GQ:PL 0/1:209,76:285:99:2398,0,8296 3 75786802 . G A 2814.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;CNN_1D=-11.274;DP=288;ExcessHet=3.0103;FS=2.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.401;SOR=0.677 GT:AD:DP:GQ:PL 0/1:200,85:285:99:2822,0,8298 3 75786817 . CACATTCATT C 3602.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;CNN_1D=-14.989;DP=313;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=1.165;SOR=0.647 GT:AD:DP:GQ:PL 0/1:201,101:302:99:3610,0,8512 3 75786827 . A T 7313.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.743;CNN_1D=-9.518;DP=307;ExcessHet=3.0103;FS=2.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.90;ReadPosRankSum=-0.697;SOR=0.678 GT:AD:DP:GQ:PL 0/1:126,180:306:99:7321,0,4734 3 75786832 . C T 3906.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;CNN_1D=-12.398;DP=315;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=-2.016;SOR=0.733 GT:AD:DP:GQ:PL 0/1:198,111:309:99:3914,0,7842 3 75786845 . T C 9184.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;CNN_1D=-9.726;DP=343;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.42;ReadPosRankSum=-0.092;SOR=0.625 GT:AD:DP:GQ:PL 0/1:111,224:335:99:9192,0,3780 3 75786854 . A T 3098.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;CNN_1D=-14.026;DP=345;ExcessHet=3.0103;FS=3.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=-0.344;SOR=0.849 GT:AD:DP:GQ:PL 0/1:244,100:344:99:3106,0,9880 3 75786866 . G T 3789.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;CNN_1D=-14.962;DP=364;ExcessHet=3.0103;FS=2.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=1.059;SOR=0.774 GT:AD:DP:GQ:PL 0/1:255,108:363:99:3797,0,10524 3 75786888 . C T 579.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;CNN_1D=-16.070;DP=395;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.507;SOR=0.783 GT:AD:DP:GQ:PL 0/1:354,40:394:99:587,0,14751 3 75786892 . A C 4050.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;CNN_1D=-15.785;DP=397;ExcessHet=3.0103;FS=3.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=2.269;SOR=0.763 GT:AD:DP:GQ:PL 0/1:279,117:396:99:4058,0,11542 3 75786894 . GT G 618.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;CNN_1D=-16.117;DP=399;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.161;SOR=0.704 GT:AD:DP:GQ:PL 0/1:357,41:398:99:626,0,14597 3 75786899 . T C 3927.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;CNN_1D=-15.305;DP=387;ExcessHet=3.0103;FS=2.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=2.842;SOR=0.751 GT:AD:DP:GQ:PL 0/1:272,114:386:99:3935,0,11529 3 75786916 . C A 3982.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;CNN_1D=-14.454;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=2.290;SOR=0.691 GT:AD:DP:GQ:PL 0/1:253,111:364:99:3990,0,10532 3 75786919 . A T 3952.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;CNN_1D=-14.531;DP=365;ExcessHet=3.0103;FS=0.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=2.229;SOR=0.732 GT:AD:DP:GQ:PL 0/1:253,111:364:99:3960,0,10367 3 75786921 . G A 230.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;CNN_1D=-15.816;DP=358;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.740;SOR=0.815 GT:AD:DP:GQ:PL 0/1:310,47:357:99:238,0,12159 3 75786942 . C A 1604.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370;CNN_1D=-14.374;DP=323;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-1.675;SOR=0.513 GT:AD:DP:GQ:PL 0/1:230,92:322:99:1612,0,8401 3 75786965 . C T 2401.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;CNN_1D=-11.421;DP=283;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=1.496;SOR=0.605 GT:AD:DP:GQ:PL 0/1:204,78:282:99:2409,0,7890 3 75786991 . C T 2268.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;CNN_1D=-7.661;DP=214;ExcessHet=3.0103;FS=9.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.560;SOR=1.184 GT:AD:DP:GQ:PL 0/1:150,64:214:99:2276,0,5975 3 75787032 . T C 1011.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;CNN_1D=-5.607;DP=145;ExcessHet=3.0103;FS=4.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=-1.420;SOR=1.136 GT:AD:DP:GQ:PL 0/1:105,35:140:99:1019,0,4857 3 75787042 . G GAAAT 859.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.423;CNN_1D=-7.059;DP=134;ExcessHet=3.0103;FS=2.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-1.306;SOR=1.048 GT:AD:DP:GQ:PL 0/1:101,28:129:99:867,0,4878 3 75787044 . A ACTT 847.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;CNN_1D=-6.621;DP=128;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=-0.810;SOR=1.057 GT:AD:DP:GQ:PL 0/1:99,25:124:99:855,0,4820 3 75787049 . C A 458.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;CNN_1D=-4.818;DP=127;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.434;SOR=0.556 GT:AD:DP:GQ:PL 0/1:106,20:126:99:466,0,4563 3 75787057 . G A 1371.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;CNN_1D=-3.361;DP=123;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=0.288;SOR=0.798 GT:AD:DP:GQ:PL 0/1:84,38:122:99:1379,0,3560 3 75787159 . C T 2190.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;CNN_1D=-10.278;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-4.720;QD=11.29;ReadPosRankSum=1.625;SOR=0.732 GT:AD:DP:GQ:PL 0/1:132,62:194:99:2198,0,5412 3 75787169 . G A 3232.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.109;CNN_1D=-6.512;DP=189;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-3.563;QD=17.19;ReadPosRankSum=2.809;SOR=0.631 GT:AD:DP:GQ:PL 0/1:103,85:188:99:3240,0,4186 3 75787186 . C T 3011.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;CNN_1D=-7.787;DP=189;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-3.819;QD=15.93;ReadPosRankSum=3.135;SOR=0.559 GT:AD:DP:GQ:PL 0/1:110,79:189:99:3019,0,4456 3 75787199 . A C 587.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;CNN_1D=-7.270;DP=175;ExcessHet=3.0103;FS=5.475;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=1.330;QD=3.36;ReadPosRankSum=1.354;SOR=1.074 GT:AD:DP:GQ:PL 0/1:150,25:175:99:595,0,6226 3 75787202 . G T 1155.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;CNN_1D=-11.207;DP=170;ExcessHet=3.0103;FS=3.341;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-6.154;QD=6.80;ReadPosRankSum=0.914;SOR=0.973 GT:AD:DP:GQ:PL 0/1:133,37:170:99:1163,0,5638 3 75787204 . C A 1130.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;CNN_1D=-10.821;DP=170;ExcessHet=3.0103;FS=3.341;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-6.154;QD=6.65;ReadPosRankSum=0.540;SOR=0.973 GT:AD:DP:GQ:PL 0/1:133,37:170:99:1138,0,5683 3 75787208 . G A 1088.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;CNN_1D=-11.041;DP=169;ExcessHet=3.0103;FS=3.396;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-6.239;QD=6.44;ReadPosRankSum=-0.075;SOR=0.871 GT:AD:DP:GQ:PL 0/1:133,36:169:99:1096,0,5686 3 75787221 . C T 1907.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;CNN_1D=-7.841;DP=152;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-4.581;QD=12.55;ReadPosRankSum=-0.597;SOR=0.763 GT:AD:DP:GQ:PL 0/1:101,51:152:99:1915,0,4336 3 75787222 . A G 830.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.230;CNN_1D=-11.687;DP=151;ExcessHet=3.0103;FS=5.295;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-6.825;QD=5.50;ReadPosRankSum=-0.642;SOR=1.132 GT:AD:DP:GQ:PL 0/1:123,28:151:99:838,0,5398 3 75787224 . C G 623.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;CNN_1D=-5.411;DP=151;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=1.417;QD=4.27;ReadPosRankSum=-0.771;SOR=0.883 GT:AD:DP:GQ:PL 0/1:123,23:146:99:631,0,5407 3 75787225 . G A 650.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;CNN_1D=-12.478;DP=151;ExcessHet=3.0103;FS=7.193;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-7.311;QD=4.31;ReadPosRankSum=-1.017;SOR=1.328 GT:AD:DP:GQ:PL 0/1:126,25:151:99:658,0,5651 3 75787228 . A C 653.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;CNN_1D=-12.597;DP=150;ExcessHet=3.0103;FS=7.259;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-7.283;QD=4.36;ReadPosRankSum=-1.649;SOR=1.306 GT:AD:DP:GQ:PL 0/1:125,25:150:99:661,0,5658 3 75787235 . C T 530.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;CNN_1D=-12.415;DP=149;ExcessHet=3.0103;FS=9.803;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-7.828;QD=3.56;ReadPosRankSum=-1.525;SOR=1.570 GT:AD:DP:GQ:PL 0/1:127,22:149:99:538,0,5675 3 75787236 . C T 485.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;CNN_1D=-4.988;DP=147;ExcessHet=3.0103;FS=3.108;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=1.338;QD=3.30;ReadPosRankSum=-1.368;SOR=0.945 GT:AD:DP:GQ:PL 0/1:126,21:147:99:493,0,5758 3 75787251 . T C 495.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.308;CNN_1D=-13.092;DP=141;ExcessHet=3.0103;FS=10.290;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-8.027;QD=3.51;ReadPosRankSum=-3.833;SOR=1.302 GT:AD:DP:GQ:PL 0/1:121,20:141:99:503,0,5925 3 75787253 . G A 456.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.906;CNN_1D=-13.179;DP=141;ExcessHet=3.0103;FS=6.790;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-8.531;QD=3.24;ReadPosRankSum=-3.485;SOR=1.053 GT:AD:DP:GQ:PL 0/1:123,18:141:99:464,0,5936 3 75787259 . T C 327.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.072;CNN_1D=-13.987;DP=139;ExcessHet=3.0103;FS=3.693;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-9.053;QD=2.36;ReadPosRankSum=-4.030;SOR=0.779 GT:AD:DP:GQ:PL 0/1:123,16:139:99:335,0,6124 3 75787266 . CCT C 228.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.048;CNN_1D=-8.209;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=1.038;QD=1.63;ReadPosRankSum=-0.067;SOR=0.576 GT:AD:DP:GQ:PL 0/1:126,14:140:99:236,0,6551 3 75787269 . G A 246.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.531;CNN_1D=-4.737;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=0.988;QD=1.80;ReadPosRankSum=-0.206;SOR=0.559 GT:AD:DP:GQ:PL 0/1:123,14:137:99:254,0,6299 3 75787279 . A T 348.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;CNN_1D=-4.783;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=0.957;QD=2.58;ReadPosRankSum=-0.756;SOR=0.602 GT:AD:DP:GQ:PL 0/1:118,17:135:99:356,0,6215 3 75787288 . T C 369.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.573;CNN_1D=-4.561;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-1.542;SOR=0.677 GT:AD:DP:GQ:PL 0/1:107,16:123:99:377,0,6164 3 75787298 . T C 219.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.129;CNN_1D=-4.598;DP=119;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-0.788;SOR=0.691 GT:AD:DP:GQ:PL 0/1:106,13:119:99:227,0,6013 3 75787299 . G A 126.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;CNN_1D=-4.765;DP=117;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.039;SOR=0.511 GT:AD:DP:GQ:PL 0/1:107,10:117:99:134,0,6170 3 75787302 . T C 126.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.569;CNN_1D=-4.479;DP=116;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.064;SOR=0.495 GT:AD:DP:GQ:PL 0/1:106,10:116:99:134,0,6202 3 75787313 . C G 315.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.500;CNN_1D=-4.599;DP=118;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.757;SOR=0.677 GT:AD:DP:GQ:PL 0/1:105,13:118:99:323,0,6259 3 75787321 . C T 358.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;CNN_1D=-5.589;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-2.143;SOR=0.641 GT:AD:DP:GQ:PL 0/1:106,19:125:99:366,0,5957 3 75787352 . T TA 116.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.933;CNN_1D=-11.040;DP=150;ExcessHet=3.0103;FS=23.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;SOR=3.605 GT:AD:DP:GQ:PL 0/1:138,12:150:99:124,0,5889 3 75787353 . G A 119.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.019;CNN_1D=-9.333;DP=151;ExcessHet=3.0103;FS=26.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-1.683;SOR=3.762 GT:AD:DP:GQ:PL 0/1:138,13:151:99:127,0,5847 3 75787372 . A T 1229.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;CNN_1D=-5.991;DP=162;ExcessHet=3.0103;FS=14.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=0.083;SOR=1.478 GT:AD:DP:GQ:PL 0/1:115,47:162:99:1237,0,2786 3 75787382 . T C 3780.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743;CNN_1D=-1.621;DP=172;ExcessHet=3.0103;FS=17.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.98;ReadPosRankSum=1.576;SOR=0.257 GT:AD:DP:GQ:PL 0/1:32,140:172:99:3788,0,919 3 75787405 . C T 1202.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;CNN_1D=-7.519;DP=177;ExcessHet=3.0103;FS=13.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-0.949;SOR=1.529 GT:AD:DP:GQ:PL 0/1:138,39:177:99:1210,0,5822 3 75787416 . C T 357.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;CNN_1D=-8.760;DP=187;ExcessHet=3.0103;FS=15.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.836;SOR=1.954 GT:AD:DP:GQ:PL 0/1:157,30:187:99:365,0,6508 3 75787424 . C G 2504.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.299;CNN_1D=-6.543;DP=194;ExcessHet=3.0103;FS=8.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=-0.083;SOR=1.241 GT:AD:DP:GQ:PL 0/1:120,74:194:99:2512,0,2783 3 75787427 . T C 1730.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.053;CNN_1D=-8.070;DP=191;ExcessHet=3.0103;FS=20.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.007;SOR=1.821 GT:AD:DP:GQ:PL 0/1:137,54:191:99:1738,0,5707 3 75787455 . A G 224.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;CNN_1D=-10.081;DP=214;ExcessHet=3.0103;FS=4.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.687;SOR=0.672 GT:AD:DP:GQ:PL 0/1:194,20:214:99:232,0,8386 3 75787462 . G A 191.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;CNN_1D=-10.582;DP=224;ExcessHet=3.0103;FS=4.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.971;SOR=0.670 GT:AD:DP:GQ:PL 0/1:204,20:224:99:199,0,8868 3 75787463 . C T 188.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;CNN_1D=-10.272;DP=226;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-1.023;SOR=0.671 GT:AD:DP:GQ:PL 0/1:206,20:226:99:196,0,8910 3 75787464 . C T 3187.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;CNN_1D=-7.676;DP=224;ExcessHet=3.0103;FS=7.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=1.058;SOR=1.144 GT:AD:DP:GQ:PL 0/1:137,87:224:99:3195,0,5356 3 75787474 . G A 113.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;CNN_1D=-11.104;DP=224;ExcessHet=3.0103;FS=6.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-1.151;SOR=1.044 GT:AD:DP:GQ:PL 0/1:205,18:223:99:121,0,8855 3 75787476 . C T 341.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;CNN_1D=-10.279;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.315;SOR=0.686 GT:AD:DP:GQ:PL 0/1:171,32:203:99:349,0,6422 3 75787486 . C T 4424.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;CNN_1D=-7.660;DP=246;ExcessHet=3.0103;FS=3.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.06;ReadPosRankSum=1.277;SOR=0.944 GT:AD:DP:GQ:PL 0/1:126,119:245:99:4432,0,4634 3 75787490 . A T 37.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;CNN_1D=-11.791;DP=247;ExcessHet=3.0103;FS=4.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.15;ReadPosRankSum=-0.444;SOR=0.725 GT:AD:DP:GQ:PL 0/1:228,18:246:45:45,0,9855 3 75787511 . C A 43.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;CNN_1D=-13.566;DP=277;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.16;ReadPosRankSum=0.018;SOR=0.480 GT:AD:DP:GQ:PL 0/1:255,20:275:51:51,0,10903 3 75787516 . C G 5062.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;CNN_1D=-9.490;DP=276;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.48;ReadPosRankSum=-0.487;SOR=0.844 GT:AD:DP:GQ:PL 0/1:144,130:274:99:5070,0,5588 3 75787519 . C A 5080.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;CNN_1D=-9.159;DP=277;ExcessHet=3.0103;FS=2.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=-0.527;SOR=0.850 GT:AD:DP:GQ:PL 0/1:143,132:275:99:5088,0,5627 3 75787520 . T G 6091.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;CNN_1D=-8.150;DP=276;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.23;ReadPosRankSum=-0.513;SOR=0.769 GT:AD:DP:GQ:PL 0/1:122,152:274:99:6099,0,4659 3 75787637 . C T 6983.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.916;CNN_1D=-7.230;DP=272;ExcessHet=3.0103;FS=6.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.77;ReadPosRankSum=-0.167;SOR=0.596 GT:AD:DP:GQ:PL 0/1:91,180:271:99:6991,0,3183 3 75787645 . GAA G 6889.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;CNN_1D=-7.751;DP=258;ExcessHet=3.0103;FS=8.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.81;ReadPosRankSum=0.359;SOR=0.510 GT:AD:DP:GQ:PL 0/1:89,168:257:99:6897,0,3269 3 75787679 . T C 6357.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;CNN_1D=-7.210;DP=257;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=0.151;SOR=0.608 GT:AD:DP:GQ:PL 0/1:87,166:253:99:6365,0,3099 3 75787688 . T A 6199.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;CNN_1D=-5.746;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=1.050;SOR=0.710 GT:AD:DP:GQ:PL 0/1:89,155:244:99:6207,0,3359 3 75787702 . C G 6380.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;CNN_1D=-6.161;DP=263;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.26;ReadPosRankSum=1.135;SOR=0.527 GT:AD:DP:GQ:PL 0/1:97,166:263:99:6388,0,2879 3 75787726 . G A 10279.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.089;CNN_1D=-4.970;DP=260;ExcessHet=3.0103;FS=8.118;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=32.48;ReadPosRankSum=-0.431;SOR=0.451 GT:AD:DP:GQ:PL 1/1:13,243:256:99:10293,259,0 3 75787732 . A C 3662.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;CNN_1D=-9.208;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.214;SOR=0.671 GT:AD:DP:GQ:PL 0/1:117,145:262:99:3670,0,2869 3 75787739 . A T 11421.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-5.956;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.31;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,262:262:99:11435,798,0 3 75787794 . A G 10316.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;CNN_1D=-15.444;DP=436;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.66;ReadPosRankSum=-1.756;SOR=0.543 GT:AD:DP:GQ:PL 0/1:121,315:436:99:10324,0,2270 3 75787801 . T C 4447.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;CNN_1D=-16.097;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=-1.458;SOR=0.697 GT:AD:DP:GQ:PL 0/1:325,126:451:99:4455,0,13956 3 75787802 . G A 4441.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;CNN_1D=-16.105;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-1.394;SOR=0.709 GT:AD:DP:GQ:PL 0/1:325,126:451:99:4449,0,13999 3 75787809 . T C 4530.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;CNN_1D=-16.113;DP=475;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-1.593;SOR=0.609 GT:AD:DP:GQ:PL 0/1:336,139:475:99:4538,0,13960 3 75787829 . C G 1086.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;CNN_1D=-16.117;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=2.133;SOR=0.712 GT:AD:DP:GQ:PL 0/1:401,84:485:99:1094,0,12504 3 75787869 . C T 13354.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;CNN_1D=-15.852;DP=485;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.54;ReadPosRankSum=2.166;SOR=0.778 GT:AD:DP:GQ:PL 0/1:155,330:485:99:13362,0,5998 3 75787870 . A G 13354.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.554;CNN_1D=-15.739;DP=485;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.54;ReadPosRankSum=2.284;SOR=0.799 GT:AD:DP:GQ:PL 0/1:156,329:485:99:13362,0,5998 3 75787876 . G T 12977.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;CNN_1D=-15.604;DP=471;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.55;ReadPosRankSum=2.798;SOR=0.765 GT:AD:DP:GQ:PL 0/1:156,315:471:99:12985,0,6174 3 75787880 . A G 6154.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.265;CNN_1D=-16.106;DP=474;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=0.791;SOR=0.657 GT:AD:DP:GQ:PL 0/1:296,178:474:99:6162,0,12081 3 75787897 . T C 4318.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;CNN_1D=-16.109;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=1.263;SOR=0.678 GT:AD:DP:GQ:PL 0/1:334,133:467:99:4326,0,13395 3 75787927 . A G 10275.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;CNN_1D=-13.731;DP=409;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.19;ReadPosRankSum=-0.812;SOR=0.790 GT:AD:DP:GQ:PL 0/1:130,278:408:99:10283,0,4271 3 75787949 . C T 9281.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;CNN_1D=-10.782;DP=342;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.38;ReadPosRankSum=1.857;SOR=0.786 GT:AD:DP:GQ:PL 0/1:116,223:339:99:9289,0,4257 3 75787961 . A G 2376.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;CNN_1D=-13.913;DP=326;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=0.048;SOR=0.652 GT:AD:DP:GQ:PL 0/1:243,80:323:99:2384,0,9862 3 75787962 . G C 4621.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.068;CNN_1D=-11.487;DP=325;ExcessHet=3.0103;FS=0.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=3.686;SOR=0.725 GT:AD:DP:GQ:PL 0/1:199,123:322:99:4629,0,7733 3 75787996 . C T 1117.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;CNN_1D=-11.282;DP=264;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-1.522;SOR=0.842 GT:AD:DP:GQ:PL 0/1:175,57:232:99:1125,0,5514 3 75788010 . A C 9544.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.826;CNN_1D=-4.296;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.85;ReadPosRankSum=0.823;SOR=0.270 GT:AD:DP:GQ:PL 1/1:1,241:242:99:9558,723,0 3 75788023 . C T 2840.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;CNN_1D=-6.832;DP=214;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-0.207;SOR=0.553 GT:AD:DP:GQ:PL 0/1:104,102:206:99:2848,0,2631 3 75788028 . G C 158.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;CNN_1D=-10.313;DP=210;ExcessHet=3.0103;FS=2.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-2.878;SOR=1.022 GT:AD:DP:GQ:PL 0/1:183,26:209:99:166,0,7078 3 75788068 . A C 288.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;CNN_1D=-8.232;DP=187;ExcessHet=3.0103;FS=2.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.084;SOR=0.857 GT:AD:DP:GQ:PL 0/1:157,29:186:99:296,0,5790 3 75788076 . A C 1499.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.723;CNN_1D=-6.898;DP=188;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=-1.804;SOR=0.757 GT:AD:DP:GQ:PL 0/1:95,71:166:99:1507,0,3467 3 75788115 . G A 5547.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;CNN_1D=-3.775;DP=230;ExcessHet=3.0103;FS=8.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.05;ReadPosRankSum=4.208;SOR=0.686 GT:AD:DP:GQ:PL 0/1:44,169:213:99:5555,0,454 3 75788130 . C A 2940.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;CNN_1D=-9.302;DP=260;ExcessHet=3.0103;FS=2.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.141;SOR=0.716 GT:AD:DP:GQ:PL 0/1:176,82:258:99:2948,0,7322 3 75788150 . A AG 3244.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;CNN_1D=-12.823;DP=268;ExcessHet=3.0103;FS=3.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=1.966;SOR=0.678 GT:AD:DP:GQ:PL 0/1:182,86:268:99:3252,0,7295 3 75788152 . T G,C 5155.02 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.638;CNN_1D=-8.612;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.95;ReadPosRankSum=0.875;SOR=0.675 GT:AD:DP:GQ:PL 1/2:68,115,89:272:99:5172,1231,3319,1676,0,4808 3 75788158 . G C 325.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;CNN_1D=-13.784;DP=288;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-2.888;SOR=0.713 GT:AD:DP:GQ:PL 0/1:219,52:271:99:333,0,8776 3 75788199 . T C 570.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;CNN_1D=-15.265;DP=328;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-1.068;SOR=0.783 GT:AD:DP:GQ:PL 0/1:258,57:315:99:578,0,7320 3 75788226 . C G 5146.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;CNN_1D=-9.193;DP=299;ExcessHet=3.0103;FS=4.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.49;ReadPosRankSum=2.098;SOR=0.496 GT:AD:DP:GQ:PL 0/1:95,169:264:99:5154,0,3522 3 75788227 . A G 8376.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;CNN_1D=-7.626;DP=297;ExcessHet=3.0103;FS=6.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.20;ReadPosRankSum=0.596;SOR=0.560 GT:AD:DP:GQ:PL 0/1:94,203:297:99:8384,0,3308 3 75788230 . C T 365.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;CNN_1D=-14.045;DP=295;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=1.325;SOR=0.701 GT:AD:DP:GQ:PL 0/1:253,42:295:99:373,0,9831 3 75788245 . C T 3774.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;CNN_1D=-10.673;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=2.370;SOR=0.684 GT:AD:DP:GQ:PL 0/1:188,104:292:99:3782,0,6771 3 75788258 . C A 6234.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;CNN_1D=-6.776;DP=275;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.80;ReadPosRankSum=1.012;SOR=0.523 GT:AD:DP:GQ:PL 0/1:100,162:262:99:6242,0,3462 3 75788273 . G T 118.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;CNN_1D=-12.182;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.832;SOR=0.642 GT:AD:DP:GQ:PL 0/1:234,32:266:99:126,0,8866 3 75788281 . T C 6189.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;CNN_1D=-6.170;DP=247;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.06;ReadPosRankSum=0.499;SOR=0.742 GT:AD:DP:GQ:PL 0/1:96,151:247:99:6197,0,3669 3 75788291 . A G 2214.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.579;CNN_1D=-9.354;DP=245;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=1.604;SOR=0.738 GT:AD:DP:GQ:PL 0/1:179,65:244:99:2222,0,7187 3 75788292 . T A 5928.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;CNN_1D=-5.400;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.50;ReadPosRankSum=0.937;SOR=0.688 GT:AD:DP:GQ:PL 0/1:97,145:242:99:5936,0,3802 3 75788314 . T C 1931.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;CNN_1D=-9.840;DP=245;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=1.067;SOR=0.776 GT:AD:DP:GQ:PL 0/1:179,61:240:99:1939,0,7269 3 75788316 . C T 2307.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;CNN_1D=-9.315;DP=247;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=1.888;SOR=0.832 GT:AD:DP:GQ:PL 0/1:173,73:246:99:2315,0,7012 3 75788366 . C A 459.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;CNN_1D=-14.563;DP=302;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-3.480;SOR=0.786 GT:AD:DP:GQ:PL 0/1:245,51:296:99:467,0,8703 3 75788376 . G GTT 385.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;CNN_1D=-16.046;DP=313;ExcessHet=3.0103;FS=7.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=1.086;SOR=1.355 GT:AD:DP:GQ:PL 0/1:282,29:311:99:393,0,11607 3 75788382 . C T 424.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;CNN_1D=-14.797;DP=328;ExcessHet=3.0103;FS=5.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.336;SOR=1.169 GT:AD:DP:GQ:PL 0/1:294,32:326:99:432,0,12627 3 75788390 . A C 487.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;CNN_1D=-15.023;DP=334;ExcessHet=3.0103;FS=5.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=1.787;SOR=1.208 GT:AD:DP:GQ:PL 0/1:299,33:332:99:495,0,12600 3 75788394 . C G 549.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;CNN_1D=-15.165;DP=334;ExcessHet=3.0103;FS=6.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.756;SOR=1.263 GT:AD:DP:GQ:PL 0/1:295,37:332:99:557,0,12585 3 75788434 . G T 1684.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;CNN_1D=-16.005;DP=391;ExcessHet=3.0103;FS=1.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.647;SOR=0.601 GT:AD:DP:GQ:PL 0/1:289,98:387:99:1692,0,9136 3 75788484 . A G 3083.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;CNN_1D=-10.641;DP=289;ExcessHet=3.0103;FS=6.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-0.230;SOR=0.422 GT:AD:DP:GQ:PL 0/1:186,100:286:99:3091,0,4634 3 75788489 . C T 902.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.876;CNN_1D=-12.384;DP=284;ExcessHet=3.0103;FS=7.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=0.475;SOR=0.369 GT:AD:DP:GQ:PL 0/1:218,63:281:99:910,0,9087 3 75788506 . GA G 6260.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;CNN_1D=-4.356;DP=232;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.98;ReadPosRankSum=-0.065;SOR=0.565 GT:AD:DP:GQ:PL 0/1:51,165:216:99:6268,0,966 3 75790419 . T C 448.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;CNN_1D=-11.650;DP=263;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.207;SOR=0.496 GT:AD:DP:GQ:PL 0/1:234,28:262:99:456,0,9951 3 75790420 . G A 436.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;CNN_1D=-12.453;DP=267;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.125;SOR=0.486 GT:AD:DP:GQ:PL 0/1:238,28:266:99:444,0,10119 3 75790427 . C T 433.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;CNN_1D=-13.230;DP=284;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.156;SOR=0.577 GT:AD:DP:GQ:PL 0/1:254,29:283:99:441,0,10746 3 75790444 . G A 578.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;CNN_1D=-15.176;DP=324;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.749;SOR=0.860 GT:AD:DP:GQ:PL 0/1:266,57:323:99:586,0,8972 3 75790446 . G T 4389.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;CNN_1D=-11.745;DP=324;ExcessHet=3.0103;FS=5.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=0.361;SOR=0.850 GT:AD:DP:GQ:PL 0/1:206,117:323:99:4397,0,8437 3 75790447 . G A 4386.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;CNN_1D=-12.463;DP=327;ExcessHet=3.0103;FS=4.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=0.238;SOR=0.854 GT:AD:DP:GQ:PL 0/1:207,119:326:99:4394,0,8479 3 75790448 . T C 371.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;CNN_1D=-15.103;DP=327;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.492;SOR=0.772 GT:AD:DP:GQ:PL 0/1:294,32:326:99:379,0,12087 3 75790466 . G T 4529.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;CNN_1D=-14.096;DP=350;ExcessHet=3.0103;FS=2.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=-0.246;SOR=0.574 GT:AD:DP:GQ:PL 0/1:216,133:349:99:4537,0,8526 3 75790479 . C T 2006.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;CNN_1D=-15.174;DP=345;ExcessHet=3.0103;FS=2.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=1.532;SOR=0.841 GT:AD:DP:GQ:PL 0/1:236,108:344:99:2014,0,7751 3 75790513 . T C 12913.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-7.467;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.22;SOR=1.053 GT:AD:DP:GQ:PL 1/1:0,289:289:99:12927,882,0 3 75790516 . T A 312.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;CNN_1D=-13.357;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.143;SOR=0.709 GT:AD:DP:GQ:PL 0/1:259,27:286:99:320,0,10241 3 75790527 . T C 2782.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;CNN_1D=-9.282;DP=259;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=0.166;SOR=0.572 GT:AD:DP:GQ:PL 0/1:155,102:257:99:2790,0,4573 3 75790822 . A G 1540.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;CNN_1D=0.053;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=0.347;SOR=0.777 GT:AD:DP:GQ:PL 0/1:29,67:96:99:1548,0,962 3 75986663 . C A 4526.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;CNN_1D=-16.075;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.42;MQRankSum=-12.683;QD=17.21;ReadPosRankSum=-2.042;SOR=0.672 GT:AD:DP:GQ:PL 0/1:93,170:263:99:4534,0,1881 3 75986686 . A G 5364.60 basic_snp_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;CNN_1D=-16.117;DP=310;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.500;MQ=50.64;MQRankSum=-13.333;QD=17.36;ReadPosRankSum=-0.343;SOR=0.891 GT:AD:DP:GQ:PL 0/1:107,202:309:99:5372,0,2219 3 75986717 . G A 2044.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;CNN_1D=-15.977;DP=297;ExcessHet=3.0103;FS=4.817;MLEAC=1;MLEAF=0.500;MQ=51.40;MQRankSum=-6.929;QD=6.91;ReadPosRankSum=2.400;SOR=0.982 GT:AD:DP:GQ:PL 0/1:187,109:296:99:2052,0,6934 3 75986719 . G C 7198.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;CNN_1D=-16.013;DP=292;ExcessHet=3.0103;FS=7.662;MLEAC=1;MLEAF=0.500;MQ=51.50;MQRankSum=-12.251;QD=24.74;ReadPosRankSum=4.255;SOR=1.115 GT:AD:DP:GQ:PL 0/1:102,189:291:99:7206,0,2091 3 78663956 . G A 1198.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;CNN_1D=-0.002;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=0.567;SOR=0.808 GT:AD:DP:GQ:PL 0/1:23,51:74:99:1206,0,408 3 78663958 . GA G 296.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;CNN_1D=-1.188;DP=72;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.734;SOR=0.506 GT:AD:DP:GQ:PL 0/1:35,19:54:99:304,0,704 3 78676467 . A G 2292.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.091;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.61;SOR=1.320 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2306,248,0 3 81643167 . T C 1733.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.407;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.88;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1747,174,0 3 81698130 . T C 503.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;CNN_1D=1.440;DP=52;ExcessHet=3.0103;FS=3.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=0.170;SOR=0.620 GT:AD:DP:GQ:PL 0/1:27,24:51:99:511,0,609 3 86010625 . A G 658.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;CNN_1D=0.227;DP=70;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.243;SOR=0.836 GT:AD:DP:GQ:PL 0/1:39,31:70:99:666,0,958 3 87295049 . T C 1748.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.674;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.63;SOR=1.217 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1762,177,0 3 88189341 . T C 2649.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.094;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.45;SOR=1.090 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2663,259,0 3 88190809 . C T 1910.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.908;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.51;SOR=0.990 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1924,201,0 3 88199298 . T C 2945.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.418;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.52;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2959,320,0 3 93593119 . T C 872.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;CNN_1D=-2.914;DP=75;ExcessHet=3.0103;FS=6.104;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-2.298;QD=11.63;ReadPosRankSum=-0.519;SOR=1.414 GT:AD:DP:GQ:PL 0/1:37,38:75:99:880,0,834 3 97365038 . G A 4513.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.588;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.69;SOR=0.923 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4527,456,0 3 97365074 . A G 5254.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.296;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.22;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5268,579,0 3 97673268 . A C 3442.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.596;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.54;SOR=0.810 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3456,374,0 3 97678027 . G C 1215.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;CNN_1D=-1.291;DP=101;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=2.170;SOR=0.914 GT:AD:DP:GQ:PL 0/1:47,53:100:99:1223,0,972 3 97806944 . T C 352.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.732;CNN_1D=0.382;DP=50;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=0.065;SOR=1.037 GT:AD:DP:GQ:PL 0/1:36,14:50:99:360,0,871 3 97851998 . A C 2029.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;CNN_1D=-10.916;DP=154;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=53.55;MQRankSum=-8.262;QD=13.18;ReadPosRankSum=0.686;SOR=0.553 GT:AD:DP:GQ:PL 0/1:68,86:154:99:2037,0,1439 3 97852083 . C T 1269.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;CNN_1D=-3.519;DP=86;ExcessHet=3.0103;FS=2.900;MLEAC=1;MLEAF=0.500;MQ=52.56;MQRankSum=-2.673;QD=14.76;ReadPosRankSum=0.493;SOR=1.086 GT:AD:DP:GQ:PL 0/1:41,45:86:99:1277,0,1180 3 97852229 . T A 1159.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;CNN_1D=1.392;DP=87;ExcessHet=3.0103;FS=5.460;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.082;QD=13.33;ReadPosRankSum=0.468;SOR=0.650 GT:AD:DP:GQ:PL 0/1:41,46:87:99:1167,0,1016 3 97852353 . A G 1100.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;CNN_1D=-1.510;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=-0.199;SOR=0.619 GT:AD:DP:GQ:PL 0/1:50,48:98:99:1108,0,1175 3 97868419 . G A 1895.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;CNN_1D=-1.917;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.91;MQRankSum=1.225;QD=13.35;ReadPosRankSum=0.937;SOR=0.672 GT:AD:DP:GQ:PL 0/1:64,78:142:99:1903,0,1628 3 97868616 . C T 1319.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;CNN_1D=-11.224;DP=127;ExcessHet=3.0103;FS=6.646;MLEAC=1;MLEAF=0.500;MQ=54.70;MQRankSum=-9.790;QD=10.47;ReadPosRankSum=0.657;SOR=0.996 GT:AD:DP:GQ:PL 0/1:66,60:126:99:1327,0,1547 3 97868795 . A G 742.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;CNN_1D=2.367;DP=50;ExcessHet=3.0103;FS=4.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=-1.984;SOR=0.278 GT:AD:DP:GQ:PL 0/1:20,29:49:99:750,0,566 3 97868970 . T A 1295.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;CNN_1D=0.670;DP=103;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=1.596;QD=12.58;ReadPosRankSum=1.201;SOR=0.486 GT:AD:DP:GQ:PL 0/1:46,57:103:99:1303,0,1102 3 97887865 . G A 1691.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;CNN_1D=-4.903;DP=160;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.647;QD=10.57;ReadPosRankSum=-0.173;SOR=0.722 GT:AD:DP:GQ:PL 0/1:84,76:160:99:1699,0,2018 3 97887985 . T A 1990.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.627;CNN_1D=-4.639;DP=157;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-0.886;QD=12.68;ReadPosRankSum=0.294;SOR=0.605 GT:AD:DP:GQ:PL 0/1:68,89:157:99:1998,0,1687 3 97888042 . A T 1373.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;CNN_1D=-1.827;DP=118;ExcessHet=3.0103;FS=7.140;MLEAC=1;MLEAF=0.500;MQ=55.24;MQRankSum=1.494;QD=11.64;ReadPosRankSum=-0.433;SOR=0.298 GT:AD:DP:GQ:PL 0/1:60,58:118:99:1381,0,1383 3 97888197 . C T 753.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;CNN_1D=2.008;DP=69;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=0.819;QD=10.92;ReadPosRankSum=0.676;SOR=0.667 GT:AD:DP:GQ:PL 0/1:38,31:69:99:761,0,890 3 97983257 . C G 1326.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;CNN_1D=-0.039;DP=92;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=-0.317;SOR=0.709 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1334,0,1050 3 97983391 . C T 728.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;CNN_1D=1.038;DP=62;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-1.967;SOR=0.805 GT:AD:DP:GQ:PL 0/1:35,27:62:99:736,0,951 3 97983487 . TTGTAACCAC T 785.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;CNN_1D=-1.659;DP=81;ExcessHet=3.0103;FS=5.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-0.461;SOR=1.107 GT:AD:DP:GQ:PL 0/1:45,33:78:99:793,0,2105 3 97983561 . G C 1291.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;CNN_1D=-1.013;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=-1.388;SOR=0.692 GT:AD:DP:GQ:PL 0/1:41,56:97:99:1299,0,1000 3 97983711 . T C 552.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;CNN_1D=1.578;DP=50;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-0.622;SOR=0.859 GT:AD:DP:GQ:PL 0/1:26,24:50:99:560,0,681 3 97983942 . A G 952.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;CNN_1D=-3.178;DP=114;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.204;SOR=0.741 GT:AD:DP:GQ:PL 0/1:66,46:112:99:960,0,1512 3 97983981 . G A 856.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;CNN_1D=-2.468;DP=95;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-1.878;SOR=1.031 GT:AD:DP:GQ:PL 0/1:55,39:94:99:864,0,1376 3 98001777 . G C 981.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;CNN_1D=-1.818;DP=101;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-1.058;SOR=0.917 GT:AD:DP:GQ:PL 0/1:59,42:101:99:989,0,1453 3 98002419 . A G 835.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;CNN_1D=1.284;DP=71;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=0.374;SOR=1.002 GT:AD:DP:GQ:PL 0/1:36,35:71:99:843,0,923 3 98002587 . A G 550.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;CNN_1D=0.012;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=0.874;SOR=0.674 GT:AD:DP:GQ:PL 0/1:39,25:64:99:558,0,929 3 98073591 . TA T 197.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;CNN_1D=0.723;DP=26;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-0.227;SOR=0.374 GT:AD:DP:GQ:PL 0/1:16,9:25:99:205,0,415 3 98110406 . G GA 1142.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.721;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.05;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1156,114,0 3 98304467 . T C 2968.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.650;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.39;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2982,303,0 3 98519481 . G A 1572.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;CNN_1D=-3.463;DP=152;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=1.842;SOR=0.648 GT:AD:DP:GQ:PL 0/1:77,75:152:99:1580,0,1557 3 98619997 . G C 1077.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;CNN_1D=0.713;DP=83;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=0.988;SOR=0.554 GT:AD:DP:GQ:PL 0/1:36,47:83:99:1085,0,810 3 100170553 . G A 2107.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.026;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.47;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2121,221,0 3 100354524 . A G 693.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;CNN_1D=2.081;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=0.824;SOR=0.573 GT:AD:DP:GQ:PL 0/1:24,31:55:99:701,0,605 3 100374740 . T C 654.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;CNN_1D=-0.547;DP=69;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-1.028;SOR=0.880 GT:AD:DP:GQ:PL 0/1:40,29:69:99:662,0,933 3 100467018 . T C 1099.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;CNN_1D=-3.123;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-1.126;SOR=0.727 GT:AD:DP:GQ:PL 0/1:69,49:118:99:1107,0,1719 3 100570787 . TA T 38.60 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;CNN_1D=-2.081;DP=76;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=0.254;SOR=0.748 GT:AD:DP:GQ:PL 0/1:54,11:65:46:46,0,1211 3 100617680 . C T 1555.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;CNN_1D=-3.354;DP=141;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=0.029;SOR=0.639 GT:AD:DP:GQ:PL 0/1:67,73:140:99:1563,0,1413 3 100712249 . T C 452.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;CNN_1D=0.956;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.652;SOR=0.782 GT:AD:DP:GQ:PL 0/1:27,24:51:99:460,0,495 3 100949842 . G A 3946.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.571;CNN_1D=0.957;DP=142;ExcessHet=3.0103;FS=3.134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.79;ReadPosRankSum=-0.256;SOR=0.337 GT:AD:DP:GQ:PL 1/1:1,141:142:99:3960,401,0 3 100963154 . G A 2707.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.857;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.42;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2721,275,0 3 100994497 . C T 2326.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.830;CNN_1D=1.923;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.43;ReadPosRankSum=-1.106;SOR=0.740 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2340,214,0 3 101066717 . T A 690.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;CNN_1D=2.099;DP=52;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-1.139;SOR=0.976 GT:AD:DP:GQ:PL 0/1:24,28:52:99:698,0,463 3 101080694 . T C 406.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;CNN_1D=2.638;DP=35;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=0.293;SOR=0.976 GT:AD:DP:GQ:PL 0/1:18,16:34:99:414,0,395 3 101085413 . G A 1206.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;CNN_1D=-1.833;DP=110;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-0.872;SOR=0.924 GT:AD:DP:GQ:PL 0/1:58,51:109:99:1214,0,1266 3 101370529 . TA T 381.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;CNN_1D=-2.840;DP=66;ExcessHet=3.0103;FS=4.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-0.719;SOR=0.392 GT:AD:DP:GQ:PL 0/1:26,27:53:99:389,0,322 3 101383562 . G A 747.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;CNN_1D=2.457;DP=48;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=0.523;SOR=1.071 GT:AD:DP:GQ:PL 0/1:20,28:48:99:755,0,517 3 101484335 . G A 3455.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.260;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.04;SOR=1.377 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3469,344,0 3 101576029 . T TACTTTTAGAAAGCTTTAATAACC 1277.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.267;CNN_1D=-0.325;DP=74;ExcessHet=3.0103;FS=3.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=-2.262;SOR=1.179 GT:AD:DP:GQ:PL 0/1:38,33:71:99:1285,0,8404 3 105238901 . T C 775.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;CNN_1D=-1.023;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=0.304;SOR=0.603 GT:AD:DP:GQ:PL 0/1:29,38:67:99:783,0,700 3 105260596 . T C 3101.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.529;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.98;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3115,321,0 3 105422844 . C T 3124.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.177;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.66;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3138,327,0 3 107097346 . C A 1719.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;CNN_1D=-1.902;DP=117;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=-1.828;SOR=0.824 GT:AD:DP:GQ:PL 0/1:51,66:117:99:1727,0,1165 3 108072298 . T C 1868.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.437;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.13;SOR=1.765 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1882,185,0 3 108081247 . G A 1177.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;CNN_1D=-1.341;DP=117;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=1.343;SOR=0.636 GT:AD:DP:GQ:PL 0/1:63,54:117:99:1185,0,1358 3 108096098 . C G 1650.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.550;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.97;SOR=1.123 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1664,177,0 3 108102584 . A AAC 53.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;CNN_1D=-2.585;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=1.401;SOR=0.941 GT:AD:DP:GQ:PL 0/1:19,6:25:61:61,0,670 3 108102586 . T A 361.07 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;CNN_1D=-2.124;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=0.579;SOR=0.593 GT:AD:DP:GQ:PL 0/1:14,15:29:99:442,0,403 3 108107925 . C A 863.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;CNN_1D=0.066;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-0.796;SOR=0.756 GT:AD:DP:GQ:PL 0/1:49,38:87:99:871,0,1064 3 108117694 . G A 1030.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;CNN_1D=0.720;DP=91;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.111;SOR=0.521 GT:AD:DP:GQ:PL 0/1:47,44:91:99:1038,0,1145 3 108147728 . T C 752.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;CNN_1D=1.290;DP=73;ExcessHet=3.0103;FS=6.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=1.383;SOR=0.254 GT:AD:DP:GQ:PL 0/1:38,34:72:99:760,0,918 3 108158574 . C T 492.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;CNN_1D=0.401;DP=47;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=-0.578;SOR=1.371 GT:AD:DP:GQ:PL 0/1:26,21:47:99:500,0,674 3 108179219 . CA C 507.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;CNN_1D=-0.288;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=1.197;SOR=0.859 GT:AD:DP:GQ:PL 0/1:16,24:40:99:515,0,270 3 108188993 . G A 1041.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;CNN_1D=-0.053;DP=86;ExcessHet=3.0103;FS=2.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=1.245;SOR=1.104 GT:AD:DP:GQ:PL 0/1:42,44:86:99:1049,0,1022 3 108224685 . CA C 114.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;CNN_1D=-1.429;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.244;SOR=0.634 GT:AD:DP:GQ:PL 0/1:31,12:43:99:122,0,581 3 108229437 . G GA 137.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;CNN_1D=-0.828;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.198;SOR=0.665 GT:AD:DP:GQ:PL 0/1:42,14:56:99:145,0,995 3 108403086 . T C 2461.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.607;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.04;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2475,272,0 3 108475974 . G A 918.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;CNN_1D=-1.668;DP=99;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-1.455;SOR=0.836 GT:AD:DP:GQ:PL 0/1:56,43:99:99:926,0,1220 3 108557820 . T C 1178.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;CNN_1D=0.204;DP=89;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=1.087;SOR=0.813 GT:AD:DP:GQ:PL 0/1:41,48:89:99:1186,0,883 3 108634973 . C A 1386.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;CNN_1D=-0.981;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=1.147;SOR=0.685 GT:AD:DP:GQ:PL 0/1:50,61:111:99:1394,0,1083 3 108639423 . C T 851.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;CNN_1D=2.718;DP=54;ExcessHet=3.0103;FS=2.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-0.136;SOR=0.350 GT:AD:DP:GQ:PL 0/1:16,37:53:99:859,0,332 3 108677821 . C A 532.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;CNN_1D=1.883;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=0.974;SOR=0.602 GT:AD:DP:GQ:PL 0/1:28,24:52:99:540,0,666 3 108690221 . G A 755.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;CNN_1D=1.062;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=0.307;SOR=0.718 GT:AD:DP:GQ:PL 0/1:44,34:78:99:763,0,1091 3 108703587 . C T 747.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;CNN_1D=0.423;DP=69;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=1.544;SOR=0.658 GT:AD:DP:GQ:PL 0/1:36,33:69:99:755,0,798 3 108754214 . T C 413.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;CNN_1D=0.930;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-1.228;SOR=0.631 GT:AD:DP:GQ:PL 0/1:29,22:51:99:421,0,633 3 108754238 . A T 1348.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.755;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.51;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1362,147,0 3 108754260 . A G 418.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;CNN_1D=1.181;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=0.926;SOR=0.813 GT:AD:DP:GQ:PL 0/1:27,20:47:99:426,0,595 3 108754320 . T TA,TAA 355.10 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.643;CNN_1D=2.019;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=23.67;ReadPosRankSum=-1.044;SOR=0.346 GT:AD:DP:GQ:PL 1/2:1,8,6:15:99:372,131,116,157,0,170 3 108776343 . C T 1487.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.453;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.54;SOR=1.220 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1501,162,0 3 109052732 . T C 1093.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;CNN_1D=-0.129;DP=90;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-0.751;SOR=1.051 GT:AD:DP:GQ:PL 0/1:40,50:90:99:1101,0,843 3 111356083 . G C 2542.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.286;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.04;SOR=0.780 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2556,282,0 3 111658486 . T G 1353.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.969;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.19;SOR=1.298 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1367,144,0 3 111659377 . T C 2153.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.396;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.71;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2167,225,0 3 111719786 . A T 1165.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;CNN_1D=-2.497;DP=118;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.089;SOR=0.855 GT:AD:DP:GQ:PL 0/1:65,53:118:99:1173,0,1527 3 111799845 . A T 3448.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.018;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.94;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3462,383,0 3 111828384 . G GT 936.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;CNN_1D=-2.084;DP=88;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=1.099;SOR=0.556 GT:AD:DP:GQ:PL 0/1:52,36:88:99:944,0,1527 3 111828423 . G A 2693.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.594;CNN_1D=1.672;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=-0.841;SOR=0.859 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2707,262,0 3 111873902 . T TA 397.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;CNN_1D=-0.983;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-1.201;SOR=0.719 GT:AD:DP:GQ:PL 0/1:35,28:63:99:405,0,667 3 111918215 . C T 1480.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;CNN_1D=2.722;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.09;ReadPosRankSum=-0.831;SOR=0.788 GT:AD:DP:GQ:PL 0/1:22,37:59:99:1488,0,1057 3 111918216 . A G 1480.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;CNN_1D=3.138;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.09;ReadPosRankSum=-0.855;SOR=0.788 GT:AD:DP:GQ:PL 0/1:22,37:59:99:1488,0,1057 3 111921116 . C A 702.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;CNN_1D=-0.474;DP=73;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=-0.690;SOR=0.901 GT:AD:DP:GQ:PL 0/1:41,32:73:99:710,0,851 3 111921225 . G T 714.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;CNN_1D=1.728;DP=59;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=2.370;SOR=0.465 GT:AD:DP:GQ:PL 0/1:28,31:59:99:722,0,654 3 111923123 . G A 272.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;CNN_1D=1.740;DP=34;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-2.145;SOR=0.976 GT:AD:DP:GQ:PL 0/1:22,12:34:99:280,0,554 3 111962851 . T C 702.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;CNN_1D=2.817;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=-0.577;SOR=0.627 GT:AD:DP:GQ:PL 0/1:14,31:45:99:710,0,256 3 111981849 . C T 1097.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;CNN_1D=-1.904;DP=108;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.216;SOR=0.594 GT:AD:DP:GQ:PL 0/1:58,50:108:99:1105,0,1317 3 111981878 . T C 1121.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;CNN_1D=-2.430;DP=114;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.852;SOR=0.531 GT:AD:DP:GQ:PL 0/1:63,51:114:99:1129,0,1403 3 111981924 . T C 885.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;CNN_1D=0.356;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.445;SOR=0.646 GT:AD:DP:GQ:PL 0/1:52,38:90:99:893,0,1166 3 111983157 . G A 133.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;CNN_1D=1.178;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-0.058;SOR=0.784 GT:AD:DP:GQ:PL 0/1:17,8:25:99:141,0,393 3 111983197 . C T 218.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;CNN_1D=2.467;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-0.140;SOR=1.426 GT:AD:DP:GQ:PL 0/1:8,9:17:99:226,0,172 3 111985107 . T C 414.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;CNN_1D=0.576;DP=54;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=-0.698;SOR=0.765 GT:AD:DP:GQ:PL 0/1:33,20:53:99:422,0,771 3 111996554 . T C 977.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;CNN_1D=1.826;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=0.484;SOR=0.655 GT:AD:DP:GQ:PL 0/1:20,41:61:99:985,0,385 3 112059768 . C G 1466.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;CNN_1D=-2.283;DP=122;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.386;SOR=0.617 GT:AD:DP:GQ:PL 0/1:56,66:122:99:1474,0,1272 3 112063850 . C A 1399.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;CNN_1D=0.318;DP=97;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=0.810;SOR=0.563 GT:AD:DP:GQ:PL 0/1:40,57:97:99:1407,0,944 3 112185025 . G A 4005.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.983;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.61;SOR=0.910 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4019,420,0 3 112190137 . G T 4407.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.739;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.89;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4421,474,0 3 112253058 . C CA 1296.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.316;CNN_1D=1.802;DP=61;ExcessHet=3.0103;FS=1.606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=21.97;ReadPosRankSum=-1.140;SOR=0.453 GT:AD:DP:GQ:PL 1/1:6,53:59:13:1310,13,0 3 112253193 . C CA 623.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;CNN_1D=-0.041;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-0.440;SOR=0.569 GT:AD:DP:GQ:PL 0/1:17,34:51:99:631,0,220 3 112546473 . G A 2785.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.094;CNN_1D=2.028;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQRankSum=-0.460;QD=29.01;ReadPosRankSum=-0.770;SOR=1.029 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2799,238,0 3 112642568 . C G 1540.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.658;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.02;SOR=0.800 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1554,171,0 3 112647832 . A C 4304.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.085;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.74;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4318,420,0 3 112647988 . C T 3335.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.397;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.70;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3349,306,0 3 112648125 . G T 5577.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.841;CNN_1D=2.612;DP=128;ExcessHet=3.0103;FS=2.183;MLEAC=2;MLEAF=1.00;MQ=59.83;MQRankSum=-0.366;QD=32.67;ReadPosRankSum=-0.433;SOR=0.526 GT:AD:DP:GQ:PL 1/1:3,125:128:99:5591,235,0 3 112648127 . T G 5577.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.690;CNN_1D=1.579;DP=133;ExcessHet=3.0103;FS=2.196;MLEAC=2;MLEAF=1.00;MQ=59.75;MQRankSum=-0.481;QD=32.25;ReadPosRankSum=-0.781;SOR=0.542 GT:AD:DP:GQ:PL 1/1:3,130:133:99:5591,235,0 3 112648222 . T C 3420.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.192;CNN_1D=-1.062;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQRankSum=-0.985;QD=26.93;ReadPosRankSum=1.022;SOR=0.963 GT:AD:DP:GQ:PL 1/1:4,123:127:99:3434,282,0 3 112727184 . A T 3142.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.683;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.81;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3156,338,0 3 112991312 . C T 2085.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;CNN_1D=-8.674;DP=230;ExcessHet=3.0103;FS=3.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.282;SOR=0.615 GT:AD:DP:GQ:PL 0/1:133,97:230:99:2093,0,3074 3 112991959 . C T 1451.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;CNN_1D=-0.528;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=2.437;SOR=0.713 GT:AD:DP:GQ:PL 0/1:45,62:107:99:1459,0,1044 3 112997554 . A G 2537.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;CNN_1D=-8.995;DP=243;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=0.280;SOR=0.653 GT:AD:DP:GQ:PL 0/1:128,115:243:99:2545,0,2948 3 112998090 . T C 678.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;CNN_1D=0.830;DP=63;ExcessHet=3.0103;FS=2.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=0.083;SOR=0.416 GT:AD:DP:GQ:PL 0/1:36,27:63:99:686,0,877 3 112998265 . A G 1005.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;CNN_1D=-0.029;DP=88;ExcessHet=3.0103;FS=2.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.046;SOR=0.458 GT:AD:DP:GQ:PL 0/1:43,45:88:99:1013,0,936 3 113010466 . T C 1568.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;CNN_1D=-3.213;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=1.409;SOR=0.709 GT:AD:DP:GQ:PL 0/1:60,73:133:99:1576,0,1324 3 113015660 . G A 1746.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;CNN_1D=-3.250;DP=148;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=0.758;SOR=0.699 GT:AD:DP:GQ:PL 0/1:71,77:148:99:1754,0,1476 3 113022870 . T C 5498.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.801;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.20;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5512,585,0 3 113046640 . A G 452.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;CNN_1D=1.025;DP=58;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.657;SOR=0.389 GT:AD:DP:GQ:PL 0/1:36,22:58:99:460,0,864 3 113145006 . C T 872.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;CNN_1D=-1.974;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.451;SOR=0.634 GT:AD:DP:GQ:PL 0/1:55,43:98:99:880,0,1304 3 113146130 . T C 1142.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;CNN_1D=-0.239;DP=97;ExcessHet=3.0103;FS=0.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=2.687;SOR=0.601 GT:AD:DP:GQ:PL 0/1:43,53:96:99:1150,0,898 3 113176122 . G A 1484.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;CNN_1D=-5.357;DP=176;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=1.532;SOR=0.888 GT:AD:DP:GQ:PL 0/1:104,72:176:99:1492,0,2294 3 113222036 . G A 655.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;CNN_1D=1.090;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-0.214;SOR=0.608 GT:AD:DP:GQ:PL 0/1:38,34:72:99:663,0,807 3 113251962 . C A 345.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;CNN_1D=2.183;DP=27;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=0.097;SOR=1.148 GT:AD:DP:GQ:PL 0/1:13,14:27:99:353,0,349 3 113286405 . C T 970.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;CNN_1D=-4.309;DP=127;ExcessHet=3.0103;FS=3.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=-0.027;SOR=1.014 GT:AD:DP:GQ:PL 0/1:79,48:127:99:978,0,1830 3 113373930 . A G 5267.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-1.738;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.47;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5281,555,0 3 113376110 . TTGCTGCTGC T,TTGCTGC 3504.06 PASS AC=1,1;AF=0.500,0.500;AN=2;CNN_1D=0.002;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=29.01;SOR=0.740 GT:AD:DP:GQ:PL 1/2:0,40,46:86:99:3521,1892,1929,1664,0,1522 3 113377361 . A G 1091.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;CNN_1D=-1.533;DP=96;ExcessHet=3.0103;FS=9.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.099;SOR=1.293 GT:AD:DP:GQ:PL 0/1:50,44:94:99:1099,0,1289 3 113377505 . T G 1315.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.279;CNN_1D=-0.499;DP=99;ExcessHet=3.0103;FS=9.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=-2.650;SOR=0.958 GT:AD:DP:GQ:PL 0/1:45,54:99:99:1323,0,1024 3 113379865 . G C 1798.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;CNN_1D=-3.958;DP=150;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=1.584;SOR=0.792 GT:AD:DP:GQ:PL 0/1:76,73:149:99:1806,0,1835 3 113557787 . AGCC A 4029.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.361;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.08;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,90:90:99:4043,271,0 3 113594377 . A G 710.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;CNN_1D=-0.888;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-1.025;SOR=0.677 GT:AD:DP:GQ:PL 0/1:45,34:79:99:718,0,961 3 113619872 . C T 804.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.172;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.73;SOR=0.760 GT:AD:DP:GQ:PL 1/1:0,29:29:87:818,87,0 3 113655207 . C T 852.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;CNN_1D=-0.870;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=-0.499;SOR=0.666 GT:AD:DP:GQ:PL 0/1:52,41:93:99:860,0,1195 3 113673125 . A G 2005.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;CNN_1D=-4.719;DP=159;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-0.227;SOR=0.814 GT:AD:DP:GQ:PL 0/1:78,81:159:99:2013,0,1835 3 113858350 . C T 2583.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.542;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.38;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2597,271,0 3 113890789 . T C 1296.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;CNN_1D=-3.377;DP=126;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-1.181;SOR=0.906 GT:AD:DP:GQ:PL 0/1:64,62:126:99:1304,0,1439 3 113890815 . C T 1148.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;CNN_1D=-0.983;DP=97;ExcessHet=3.0103;FS=3.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=-0.781;SOR=0.364 GT:AD:DP:GQ:PL 0/1:46,51:97:99:1156,0,1105 3 113955164 . T G 2931.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.294;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.77;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2945,240,0 3 113955187 . A C 977.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;CNN_1D=0.107;DP=89;ExcessHet=3.0103;FS=1.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=1.351;SOR=0.513 GT:AD:DP:GQ:PL 0/1:46,43:89:99:985,0,1023 3 113955265 . G A 3652.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.503;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.09;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3666,389,0 3 113955320 . C T 3514.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.310;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.34;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3528,370,0 3 113955820 . G C 1883.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;CNN_1D=-3.908;DP=151;ExcessHet=3.0103;FS=2.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=0.387;SOR=0.911 GT:AD:DP:GQ:PL 0/1:65,86:151:99:1891,0,1438 3 118621664 . C A 1632.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;CNN_1D=-2.480;DP=135;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=1.369;SOR=0.769 GT:AD:DP:GQ:PL 0/1:61,74:135:99:1640,0,1419 3 118649060 . G T 3931.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.906;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.68;SOR=0.750 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3945,426,0 3 118865332 . A G 1216.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.630;CNN_1D=-0.978;DP=95;ExcessHet=3.0103;FS=2.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=-1.601;SOR=0.795 GT:AD:DP:GQ:PL 0/1:51,44:95:99:1224,0,1264 3 118865609 . C T 2170.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;CNN_1D=-5.373;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-1.008;SOR=0.713 GT:AD:DP:GQ:PL 0/1:96,87:183:99:2178,0,2398 3 118866376 . C T 1150.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;CNN_1D=-4.371;DP=136;ExcessHet=3.0103;FS=3.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=0.274;SOR=0.994 GT:AD:DP:GQ:PL 0/1:82,54:136:99:1158,0,2007 3 118867047 . C G 660.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;CNN_1D=0.932;DP=62;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.551;SOR=0.880 GT:AD:DP:GQ:PL 0/1:33,29:62:99:668,0,754 3 118909159 . A G 1566.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.442;CNN_1D=3.777;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.54;ReadPosRankSum=0.734;SOR=0.283 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1580,138,0 3 118931389 . C T 2536.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.913;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.49;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2550,267,0 3 118948716 . G A 1403.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;CNN_1D=-0.525;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=-0.393;SOR=0.709 GT:AD:DP:GQ:PL 0/1:45,56:101:99:1411,0,970 3 119109837 . G A 788.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;CNN_1D=-0.253;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.388;SOR=0.604 GT:AD:DP:GQ:PL 0/1:45,35:80:99:796,0,1156 3 119118104 . A G 2874.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.710;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.74;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2888,300,0 3 119128628 . A G 564.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;CNN_1D=1.894;DP=49;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=-0.555;SOR=1.044 GT:AD:DP:GQ:PL 0/1:33,16:49:99:572,0,1789 3 119133183 . G A 1844.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;CNN_1D=-3.215;DP=152;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=0.620;SOR=0.570 GT:AD:DP:GQ:PL 0/1:75,76:151:99:1852,0,1704 3 119196166 . T C 1237.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;CNN_1D=-2.010;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-0.102;SOR=0.675 GT:AD:DP:GQ:PL 0/1:70,55:125:99:1245,0,1605 3 119211294 . A G 808.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;CNN_1D=1.361;DP=60;ExcessHet=3.0103;FS=9.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=0.297;SOR=1.863 GT:AD:DP:GQ:PL 0/1:27,33:60:99:816,0,626 3 119263680 . C T 684.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;CNN_1D=-1.190;DP=85;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-2.332;SOR=0.542 GT:AD:DP:GQ:PL 0/1:52,33:85:99:692,0,1261 3 119305379 . T A 4700.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.800;CNN_1D=-1.032;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.65;ReadPosRankSum=1.250;SOR=0.717 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4714,460,0 3 119361412 . T C 145.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;CNN_1D=1.146;DP=32;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.210;SOR=1.061 GT:AD:DP:GQ:PL 0/1:23,9:32:99:153,0,591 3 119367390 . T C 6775.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-4.854;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.88;SOR=0.880 GT:AD:DP:GQ:PL 1/1:0,243:243:99:6789,729,0 3 119378872 . G A 1423.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;CNN_1D=-3.006;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.028;SOR=0.695 GT:AD:DP:GQ:PL 0/1:65,65:130:99:1431,0,1444 3 119379186 . C T 1718.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;CNN_1D=-5.749;DP=178;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.082;SOR=0.563 GT:AD:DP:GQ:PL 0/1:96,81:177:99:1726,0,2329 3 119426307 . T C 2195.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.338;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.88;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2209,228,0 3 119434527 . G C 3474.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.422;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.95;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3488,360,0 3 119533910 . T C 5054.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.469;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.77;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5068,545,0 3 119886548 . G C 5080.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.124;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.98;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5094,491,0 3 119886776 . T A 4060.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.155;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.59;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4074,426,0 3 119900212 . G C 1335.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.665;CNN_1D=-1.033;DP=101;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-0.603;SOR=0.888 GT:AD:DP:GQ:PL 0/1:44,57:101:99:1343,0,1137 3 120068022 . C G 544.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;CNN_1D=-1.212;DP=72;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-0.790;SOR=0.679 GT:AD:DP:GQ:PL 0/1:42,29:71:99:552,0,844 3 120134883 . T C 1171.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;CNN_1D=-1.178;DP=105;ExcessHet=3.0103;FS=2.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=0.347;SOR=0.455 GT:AD:DP:GQ:PL 0/1:50,55:105:99:1179,0,1111 3 120389316 . T A 3978.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.338;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.01;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3992,425,0 3 120924764 . C T 95.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;CNN_1D=-1.591;DP=16;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-1.336;SOR=2.712 GT:AD:DP:GQ:PL 0/1:12,4:16:99:103,0,299 3 120976051 . C G 678.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;CNN_1D=-1.005;DP=78;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=-1.586;SOR=0.748 GT:AD:DP:GQ:PL 0/1:46,32:78:99:686,0,1134 3 121154974 . T C 2369.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.254;CNN_1D=3.397;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.54;ReadPosRankSum=0.731;SOR=0.368 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2383,209,0 3 121202433 . TA T 36.64 basic_indel_filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.059;CNN_1D=-2.714;DP=40;ExcessHet=3.0103;FS=5.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.314;SOR=2.655 GT:AD:DP:GQ:PL 0/1:22,7:29:44:44,0,368 3 121208833 . G C 1490.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.819;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.41;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1504,146,0 3 121238749 . G A 2199.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.051;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.93;SOR=1.349 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2213,228,0 3 121263720 . C A 1844.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.645;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.81;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1858,192,0 3 121350966 . C G 3204.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.351;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.67;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3218,324,0 3 121351315 . G GGGCTCAGGCTCA 1703.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.243;CNN_1D=-3.033;DP=117;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.70;ReadPosRankSum=-0.037;SOR=0.880 GT:AD:DP:GQ:PL 0/1:51,51:102:99:1711,0,2713 3 121353254 . T C 2504.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;CNN_1D=3.001;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.45;ReadPosRankSum=0.238;SOR=1.192 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2518,214,0 3 121354583 . G A 769.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;CNN_1D=-1.372;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=0.368;SOR=0.697 GT:AD:DP:GQ:PL 0/1:52,38:90:99:777,0,1149 3 121361787 . G A 822.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;CNN_1D=-1.929;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-2.179;SOR=0.737 GT:AD:DP:GQ:PL 0/1:52,40:92:99:830,0,1157 3 121414061 . C T 914.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;CNN_1D=-1.815;DP=105;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=1.505;SOR=0.881 GT:AD:DP:GQ:PL 0/1:64,41:105:99:922,0,1649 3 121415720 . T C 1364.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;CNN_1D=-2.599;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.260;SOR=0.665 GT:AD:DP:GQ:PL 0/1:67,58:125:99:1372,0,1558 3 121416623 . G C 1028.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;CNN_1D=0.205;DP=87;ExcessHet=3.0103;FS=9.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=0.073;SOR=0.313 GT:AD:DP:GQ:PL 0/1:48,39:87:99:1036,0,1251 3 121435621 . T C 4179.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.557;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.32;SOR=1.240 GT:AD:DP:GQ:PL 1/1:0,93:93:99:4193,283,0 3 121435624 . C T 4170.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=4.017;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=38.13;SOR=1.240 GT:AD:DP:GQ:PL 1/1:0,93:93:99:4184,283,0 3 121563355 . T C 460.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;CNN_1D=1.352;DP=50;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-1.545;SOR=0.684 GT:AD:DP:GQ:PL 0/1:28,22:50:99:468,0,641 3 121712051 . A C 850.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;CNN_1D=2.040;DP=56;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=1.287;SOR=0.954 GT:AD:DP:GQ:PL 0/1:21,35:56:99:858,0,447 3 121712805 . G C 973.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;CNN_1D=-1.395;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-0.125;SOR=0.700 GT:AD:DP:GQ:PL 0/1:54,44:98:99:981,0,1297 3 121825197 . G A 3433.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.273;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.60;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3447,348,0 3 121838319 . G A 805.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;CNN_1D=-1.581;DP=102;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-0.231;SOR=0.486 GT:AD:DP:GQ:PL 0/1:60,42:102:99:813,0,1436 3 122003045 . G C 3338.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.002;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.20;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3352,320,0 3 122003769 . A G 1799.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;CNN_1D=-4.537;DP=161;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-0.506;SOR=0.777 GT:AD:DP:GQ:PL 0/1:84,77:161:99:1807,0,2014 3 122003832 . G C 4305.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.413;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.32;SOR=0.750 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4319,426,0 3 122056432 . C T 900.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;CNN_1D=-0.377;DP=79;ExcessHet=3.0103;FS=3.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.113;SOR=1.070 GT:AD:DP:GQ:PL 0/1:38,41:79:99:908,0,875 3 122186188 . C T 1107.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.733;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.68;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1121,120,0 3 122354037 . A G 565.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;CNN_1D=-0.616;DP=77;ExcessHet=3.0103;FS=8.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-0.150;SOR=0.204 GT:AD:DP:GQ:PL 0/1:50,27:77:99:573,0,1309 3 122354716 . C T 945.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;CNN_1D=-0.283;DP=90;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=0.606;SOR=0.590 GT:AD:DP:GQ:PL 0/1:43,47:90:99:953,0,919 3 122418750 . G A 1510.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;CNN_1D=-3.402;DP=145;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=0.018;SOR=0.879 GT:AD:DP:GQ:PL 0/1:85,60:145:99:1518,0,2190 3 122419083 . C A 1463.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;CNN_1D=-1.974;DP=115;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=2.426;SOR=0.874 GT:AD:DP:GQ:PL 0/1:57,58:115:99:1471,0,1461 3 122437321 . T C 3364.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.902;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.51;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3378,341,0 3 122459290 . G GAGA 2149.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;CNN_1D=-2.917;DP=119;ExcessHet=3.0103;FS=3.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=-2.554;SOR=1.075 GT:AD:DP:GQ:PL 0/1:62,55:117:99:2157,0,2823 3 122459477 . A G 2235.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;CNN_1D=-5.888;DP=193;ExcessHet=3.0103;FS=5.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=1.592;SOR=0.792 GT:AD:DP:GQ:PL 0/1:94,99:193:99:2243,0,2238 3 122459732 . G A 1012.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470;CNN_1D=0.745;DP=87;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=0.468;SOR=0.843 GT:AD:DP:GQ:PL 0/1:46,41:87:99:1020,0,1281 3 122474284 . T TA 115.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;CNN_1D=-1.881;DP=24;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-0.312;SOR=1.863 GT:AD:DP:GQ:PL 0/1:9,8:17:99:123,0,141 3 122630346 . T C 3388.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.871;CNN_1D=1.382;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.00;ReadPosRankSum=-0.173;SOR=0.853 GT:AD:DP:GQ:PL 1/1:2,119:121:99:3402,313,0 3 122631896 . A T 2080.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.096;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.59;SOR=1.263 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2094,204,0 3 122642590 . G A 3055.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.466;CNN_1D=2.635;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.28;ReadPosRankSum=1.226;SOR=0.508 GT:AD:DP:GQ:PL 1/1:3,109:112:99:3069,246,0 3 122843110 . G T 3623.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.361;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.45;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3637,356,0 3 122864436 . G A 1604.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;CNN_1D=-3.744;DP=144;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.366;SOR=0.593 GT:AD:DP:GQ:PL 0/1:73,71:144:99:1612,0,1526 3 122880191 . T C 1430.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;CNN_1D=-3.294;DP=139;ExcessHet=3.0103;FS=2.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-0.473;SOR=0.782 GT:AD:DP:GQ:PL 0/1:71,67:138:99:1438,0,1524 3 123018963 . A G 1799.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.096;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.56;SOR=1.467 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1813,189,0 3 123167249 . G A 2583.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.855;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.08;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2597,273,0 3 123411589 . G A 2331.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.777;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.14;SOR=1.031 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2345,240,0 3 123418913 . G A 3558.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.527;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.98;QD=29.16;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3572,366,0 3 123440967 . G A 1780.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.451;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.67;SOR=1.160 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1794,180,0 3 123444785 . A T 1363.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;CNN_1D=-1.443;DP=110;ExcessHet=3.0103;FS=4.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=-0.367;SOR=0.360 GT:AD:DP:GQ:PL 0/1:46,64:110:99:1371,0,912 3 123451773 . G C 3711.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.742;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.17;SOR=1.274 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3725,369,0 3 123452838 . G A 3619.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.135;CNN_1D=1.825;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.72;ReadPosRankSum=0.280;SOR=0.378 GT:AD:DP:GQ:PL 1/1:3,123:126:99:3633,289,0 3 123457893 . G A 3692.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;CNN_1D=1.191;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.15;ReadPosRankSum=0.389;SOR=0.723 GT:AD:DP:GQ:PL 1/1:2,134:136:99:3706,358,0 3 123458823 . C A 989.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;CNN_1D=-0.690;DP=103;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=0.367;SOR=0.699 GT:AD:DP:GQ:PL 0/1:59,44:103:99:997,0,1440 3 123634046 . G A 2899.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.849;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.52;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2913,285,0 3 123665902 . T G 4428.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.996;CNN_1D=1.002;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.57;ReadPosRankSum=1.699;SOR=0.223 GT:AD:DP:GQ:PL 1/1:1,154:155:99:4442,429,0 3 123988039 . T C 710.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;CNN_1D=-0.247;DP=73;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-1.578;SOR=0.537 GT:AD:DP:GQ:PL 0/1:37,35:72:99:718,0,909 3 124044949 . C T 4167.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-0.296;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.54;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4181,438,0 3 124351316 . G A 1367.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;CNN_1D=-4.493;DP=136;ExcessHet=3.0103;FS=5.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=1.515;SOR=1.146 GT:AD:DP:GQ:PL 0/1:74,62:136:99:1375,0,1874 3 124351424 . T C 1835.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;CNN_1D=-6.115;DP=184;ExcessHet=3.0103;FS=2.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.483;SOR=0.737 GT:AD:DP:GQ:PL 0/1:101,83:184:99:1843,0,2345 3 124369650 . T C 1961.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;CNN_1D=-0.056;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=1.043;SOR=0.629 GT:AD:DP:GQ:PL 0/1:54,52:106:99:1969,0,3187 3 124376653 . G A 478.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;CNN_1D=-1.711;DP=73;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=-1.511;SOR=0.866 GT:AD:DP:GQ:PL 0/1:45,26:71:99:486,0,1041 3 124379817 . T C 1096.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;CNN_1D=-3.180;DP=124;ExcessHet=3.0103;FS=1.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.577;SOR=0.553 GT:AD:DP:GQ:PL 0/1:70,54:124:99:1104,0,1634 3 124482494 . TTTGTTGAAC T 2055.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;CNN_1D=0.320;DP=94;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.34;ReadPosRankSum=-0.361;SOR=0.686 GT:AD:DP:GQ:PL 0/1:40,52:92:99:2063,0,3907 3 124627024 . T G 1572.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;CNN_1D=-3.280;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=1.838;SOR=0.693 GT:AD:DP:GQ:PL 0/1:68,68:136:99:1580,0,1477 3 124646705 . A AAAG 7641.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.548;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.38;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,168:168:99:7655,519,0 3 124692689 . C T 2820.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.914;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.78;SOR=0.820 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2834,294,0 3 124728626 . A G 1151.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;CNN_1D=-1.726;DP=101;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-0.704;SOR=0.808 GT:AD:DP:GQ:PL 0/1:48,53:101:99:1159,0,1065 3 124731485 . C G 2989.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.341;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.02;SOR=1.234 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3003,308,0 3 124732618 . A G 3443.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.667;CNN_1D=2.712;DP=114;ExcessHet=3.0103;FS=3.037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.20;ReadPosRankSum=0.259;SOR=0.120 GT:AD:DP:GQ:PL 1/1:2,112:114:99:3457,264,0 3 124732842 . C A 2109.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.211;CNN_1D=3.823;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.29;ReadPosRankSum=0.650;SOR=0.597 GT:AD:DP:GQ:PL 1/1:1,71:72:99:2123,183,0 3 124738107 . C T 2217.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.667;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.23;SOR=1.745 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2231,213,0 3 124739892 . G A 3034.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.378;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.17;SOR=1.043 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3048,312,0 3 124746049 . A G 2795.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.291;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.52;SOR=1.562 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2809,294,0 3 124746182 . C A 5323.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=-2.304;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.02;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5337,568,0 3 124746347 . T C 2480.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.018;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.87;SOR=1.204 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2494,266,0 3 124748226 . G A 3276.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.914;CNN_1D=2.164;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.53;ReadPosRankSum=1.210;SOR=0.936 GT:AD:DP:GQ:PL 1/1:2,117:119:99:3290,308,0 3 124802881 . A G 1834.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;CNN_1D=1.524;DP=99;ExcessHet=3.0103;FS=6.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.53;ReadPosRankSum=1.089;SOR=0.313 GT:AD:DP:GQ:PL 0/1:51,48:99:99:1842,0,2515 3 124802888 . C T 1824.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;CNN_1D=2.093;DP=92;ExcessHet=3.0103;FS=6.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.83;ReadPosRankSum=0.231;SOR=0.299 GT:AD:DP:GQ:PL 0/1:45,47:92:99:1832,0,2409 3 124837684 . T C 2114.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.802;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.47;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2128,248,0 3 124839470 . G A 3768.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.240;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.67;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3782,381,0 3 124854636 . A T 1951.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.138;CNN_1D=2.922;DP=72;ExcessHet=3.0103;FS=3.259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.10;ReadPosRankSum=-1.589;SOR=0.448 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1965,176,0 3 124951821 . C T 1635.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;CNN_1D=-0.350;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=1.567;SOR=0.653 GT:AD:DP:GQ:PL 0/1:47,64:111:99:1643,0,1034 3 124998098 . CA C,CAAAA 626.10 PASS AC=1,1;AF=0.500,0.500;AN=2;CNN_1D=1.964;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=25.04;SOR=0.784 GT:AD:DP:GQ:PL 1/2:0,18,7:25:99:643,243,190,450,0,667 3 125648209 . C T 546.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;CNN_1D=-2.493;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-2.864;QD=7.92;ReadPosRankSum=-1.894;SOR=0.629 GT:AD:DP:GQ:PL 0/1:42,27:69:99:554,0,1029 3 125648283 . A G 713.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;CNN_1D=-3.359;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-3.177;QD=8.30;ReadPosRankSum=0.657;SOR=0.693 GT:AD:DP:GQ:PL 0/1:50,36:86:99:721,0,1193 3 125648343 . G A 965.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;CNN_1D=-2.511;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-1.894;QD=10.50;ReadPosRankSum=-0.625;SOR=0.693 GT:AD:DP:GQ:PL 0/1:46,46:92:99:973,0,965 3 125648356 . T C 884.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;CNN_1D=0.435;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.507;QD=10.66;ReadPosRankSum=-0.255;SOR=0.760 GT:AD:DP:GQ:PL 0/1:43,40:83:99:892,0,939 3 125649403 . C A 1573.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;CNN_1D=-8.531;DP=167;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-3.294;QD=9.42;ReadPosRankSum=-1.468;SOR=0.629 GT:AD:DP:GQ:PL 0/1:89,78:167:99:1581,0,1988 3 125653291 . A G 2755.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.490;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.96;QD=27.28;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2769,303,0 3 125725268 . TAACA T 1596.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;CNN_1D=0.566;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=0.656;SOR=0.622 GT:AD:DP:GQ:PL 0/1:53,42:95:99:1604,0,2901 3 125726048 . G C 4009.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.481;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.70;SOR=1.129 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4023,405,0 3 125775228 . T C 3594.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.546;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.75;SOR=1.082 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3608,375,0 3 125786879 . T C 3298.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.953;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.71;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3312,356,0 3 125826059 . T C 1554.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;CNN_1D=-0.928;DP=119;ExcessHet=3.0103;FS=2.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=0.843;SOR=0.720 GT:AD:DP:GQ:PL 0/1:51,68:119:99:1562,0,1155 3 125850381 . A G 2485.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.379;CNN_1D=3.124;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.31;ReadPosRankSum=0.867;SOR=0.385 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2499,208,0 3 125854409 . T C 596.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;CNN_1D=-0.913;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=1.441;SOR=0.786 GT:AD:DP:GQ:PL 0/1:53,30:83:99:604,0,1211 3 125855599 . G T 1217.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;CNN_1D=-1.085;DP=93;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=0.268;SOR=0.955 GT:AD:DP:GQ:PL 0/1:40,53:93:99:1225,0,821 3 125856695 . C A 1301.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210;CNN_1D=-2.044;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=1.120;SOR=0.689 GT:AD:DP:GQ:PL 0/1:53,61:114:99:1309,0,1226 3 125865766 . C A 893.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;CNN_1D=-3.252;DP=110;ExcessHet=3.0103;FS=3.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-1.189;SOR=0.877 GT:AD:DP:GQ:PL 0/1:67,43:110:99:901,0,1550 3 125872293 . G A 820.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;CNN_1D=0.302;DP=79;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=2.047;SOR=0.869 GT:AD:DP:GQ:PL 0/1:41,38:79:99:828,0,888 3 126137558 . C T 1249.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;CNN_1D=-1.780;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=-2.844;SOR=0.693 GT:AD:DP:GQ:PL 0/1:49,53:102:99:1257,0,1032 3 126180705 . G A 1626.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;CNN_1D=-5.820;DP=169;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=-0.103;SOR=0.644 GT:AD:DP:GQ:PL 0/1:95,74:169:99:1634,0,2208 3 126194076 . T C 5312.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.232;CNN_1D=-2.815;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.96;ReadPosRankSum=0.071;SOR=0.620 GT:AD:DP:GQ:PL 1/1:3,194:197:99:5326,503,0 3 126194357 . G C 740.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.382;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.41;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,27:27:80:754,80,0 3 126194436 . G A 476.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;CNN_1D=2.312;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.706;SOR=0.874 GT:AD:DP:GQ:PL 0/1:20,22:42:99:484,0,415 3 126202257 . G A 1396.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;CNN_1D=-2.135;DP=116;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=0.828;SOR=0.826 GT:AD:DP:GQ:PL 0/1:54,62:116:99:1404,0,1227 3 126219627 . G A 1600.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;CNN_1D=-5.250;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.134;SOR=0.717 GT:AD:DP:GQ:PL 0/1:89,77:166:99:1608,0,1853 3 126260608 . G T 662.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;CNN_1D=-1.067;DP=78;ExcessHet=3.0103;FS=4.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.204;SOR=1.190 GT:AD:DP:GQ:PL 0/1:47,31:78:99:670,0,1159 3 126261202 . G A 1927.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;CNN_1D=0.705;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.18;ReadPosRankSum=0.831;SOR=0.623 GT:AD:DP:GQ:PL 0/1:53,53:106:99:1935,0,2531 3 126261207 . C T 1887.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;CNN_1D=2.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=0.774;SOR=0.656 GT:AD:DP:GQ:PL 0/1:50,49:99:99:1895,0,2508 3 126261345 . G A 904.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;CNN_1D=1.537;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=1.569;SOR=0.787 GT:AD:DP:GQ:PL 0/1:34,38:72:99:912,0,834 3 126268918 . G A 835.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;CNN_1D=-0.653;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=-0.382;SOR=0.743 GT:AD:DP:GQ:PL 0/1:49,39:88:99:843,0,1161 3 126329910 . A G 1737.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.918;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.72;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1751,195,0 3 126360952 . T A 276.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;CNN_1D=-1.588;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-1.211;SOR=0.760 GT:AD:DP:GQ:PL 0/1:47,17:64:99:284,0,1130 3 126708453 . T C 1367.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;CNN_1D=-3.636;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-0.779;SOR=0.701 GT:AD:DP:GQ:PL 0/1:68,60:128:99:1375,0,1621 3 126733053 . C T 1815.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;CNN_1D=-2.903;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.724;SOR=0.741 GT:AD:DP:GQ:PL 0/1:67,71:138:99:1823,0,1573 3 126751689 . G A 3150.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.895;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.88;SOR=0.990 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3164,338,0 3 127323830 . C T 1270.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;CNN_1D=-4.986;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.725;SOR=0.676 GT:AD:DP:GQ:PL 0/1:90,58:148:99:1278,0,2231 3 127336934 . A G 682.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;CNN_1D=1.061;DP=61;ExcessHet=3.0103;FS=3.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-0.318;SOR=1.241 GT:AD:DP:GQ:PL 0/1:31,30:61:99:690,0,701 3 127379270 . C T 923.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;CNN_1D=-0.573;DP=90;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=0.600;SOR=0.554 GT:AD:DP:GQ:PL 0/1:49,41:90:99:931,0,1199 3 127540635 . C T 1519.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800;CNN_1D=-2.040;DP=131;ExcessHet=3.0103;FS=6.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=2.202;SOR=0.384 GT:AD:DP:GQ:PL 0/1:62,69:131:99:1527,0,1444 3 127641968 . C A 308.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;CNN_1D=-1.595;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.857;SOR=0.800 GT:AD:DP:GQ:PL 0/1:51,20:71:99:316,0,1265 3 127703085 . G A 914.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;CNN_1D=-1.556;DP=101;ExcessHet=3.0103;FS=2.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.279;SOR=0.981 GT:AD:DP:GQ:PL 0/1:59,42:101:99:922,0,1319 3 127872506 . C T 549.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;CNN_1D=1.609;DP=54;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-0.883;SOR=0.452 GT:AD:DP:GQ:PL 0/1:27,27:54:99:557,0,616 3 127872602 . A G 640.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;CNN_1D=1.742;DP=57;ExcessHet=3.0103;FS=3.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=0.216;SOR=0.459 GT:AD:DP:GQ:PL 0/1:28,29:57:99:648,0,580 3 127983495 . T C 671.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;CNN_1D=-1.278;DP=83;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=0.165;SOR=0.892 GT:AD:DP:GQ:PL 0/1:52,31:83:99:679,0,1338 3 128181777 . A G 4262.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.635;CNN_1D=-0.316;DP=157;ExcessHet=3.0103;FS=4.501;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.15;ReadPosRankSum=-0.156;SOR=0.370 GT:AD:DP:GQ:PL 1/1:4,153:157:99:4276,345,0 3 128204951 . C T 2409.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;CNN_1D=-6.700;DP=202;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=1.726;SOR=0.792 GT:AD:DP:GQ:PL 0/1:107,95:202:99:2417,0,2790 3 128205860 . G C 1064.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;CNN_1D=-2.889;DP=120;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.469;SOR=0.576 GT:AD:DP:GQ:PL 0/1:70,50:120:99:1072,0,1714 3 128356852 . C T 2187.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;CNN_1D=-6.111;DP=189;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=0.671;SOR=0.580 GT:AD:DP:GQ:PL 0/1:88,101:189:99:2195,0,1836 3 128598567 . G A 927.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;CNN_1D=-0.430;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-0.631;SOR=0.687 GT:AD:DP:GQ:PL 0/1:46,39:85:99:935,0,1071 3 128614185 . A C 1770.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;CNN_1D=-6.325;DP=181;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.234;SOR=0.649 GT:AD:DP:GQ:PL 0/1:95,86:181:99:1778,0,2045 3 128627021 . A G 1306.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;CNN_1D=-4.274;DP=140;ExcessHet=3.0103;FS=3.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=-1.533;SOR=1.008 GT:AD:DP:GQ:PL 0/1:80,60:140:99:1314,0,1881 3 128627933 . C T 1406.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.966;CNN_1D=-2.322;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-0.028;SOR=0.665 GT:AD:DP:GQ:PL 0/1:57,65:122:99:1414,0,1394 3 128707600 . C A 1139.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;CNN_1D=-0.828;DP=94;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=2.879;SOR=0.861 GT:AD:DP:GQ:PL 0/1:46,48:94:99:1147,0,1020 3 128720487 . A G 1658.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.903;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.61;SOR=2.066 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1672,168,0 3 128755814 . T C 782.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;CNN_1D=0.209;DP=75;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=1.555;SOR=0.555 GT:AD:DP:GQ:PL 0/1:38,37:75:99:790,0,814 3 128755953 . G A 468.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;CNN_1D=-1.386;DP=75;ExcessHet=3.0103;FS=3.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.483;SOR=1.112 GT:AD:DP:GQ:PL 0/1:51,24:75:99:476,0,1181 3 128859202 . C CTTAG 2551.06 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.541;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.44;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2565,171,0 3 128890350 . G A 4014.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=1.388;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.51;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4028,406,0 3 129281980 . C T 2853.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.728;CNN_1D=2.797;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.17;ReadPosRankSum=0.066;SOR=0.291 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2867,282,0 3 129293183 . T C 2370.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.078;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.26;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2384,243,0 3 129324193 . A G 2791.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.992;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.36;SOR=1.270 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2805,266,0 3 129546729 . T C 3739.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=0.172;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.70;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3753,404,0 3 129694681 . C G 657.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;CNN_1D=0.425;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.729;SOR=0.593 GT:AD:DP:GQ:PL 0/1:44,27:71:99:665,0,1138 3 129695538 . C T 3027.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=2.054;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.56;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3041,318,0 3 129695954 . T C 2561.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.013;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.13;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2575,255,0 3 129696041 . A G 1555.03 PASS AC=2;AF=1.00;AN=2;CNN_1D=3.813;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.74;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1569,147,0 3 130284284 . G A 1822.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.259;CNN_1D=-6.601;DP=190;ExcessHet=3.0103;FS=5.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.111;SOR=0.876 GT:AD:DP:GQ:PL 0/1:111,79:190:99:1830,0,2530 3 130286886 . T C 1708.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;CNN_1D=-1.156;DP=120;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=-0.525;SOR=0.788 GT:AD:DP:GQ:PL 0/1:48,72:120:99:1716,0,1029 3 130293232 . T C 1890.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;CNN_1D=-7.370;DP=203;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=0.405;SOR=0.844 GT:AD:DP:GQ:PL 0/1:118,85:203:99:1898,0,2683 3 130300650 . T C 938.60 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;CNN_1D=-0.348;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRank