##fileformat=VCFv4.1
##FILTER=<ID=INDEL_LowQualityDepth,Description="QD < 2.0">
##FILTER=<ID=INDEL_ReadPosRankSumLow,Description="ReadPosRankSum < -20.0">
##FILTER=<ID=INDEL_StrandBias,Description="FS > 200.0">
##FILTER=<ID=LowQual,Description="Low quality">
##FILTER=<ID=SNP_HaplotypeScoreHigh,Description="HaplotypeScore > 13.0">
##FILTER=<ID=SNP_LowQualityDepth,Description="QD < 2.0">
##FILTER=<ID=SNP_MQRankSumLow,Description="MQRankSum < -12.5">
##FILTER=<ID=SNP_MappingQuality,Description="MQ < 40.0">
##FILTER=<ID=SNP_ReadPosRankSumLow,Description="ReadPosRankSum < -8.0">
##FILTER=<ID=SNP_StrandBias,Description="FS > 60.0">
##FILTER=<ID=SnpCluster,Description="SNPs found in clusters">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,Version=3.4-46-gbc02625,Date="Thu Dec 07 13:09:00 UTC 2017",Epoch=1512652140132,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=variant source=/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/tmp/TRIO.filtered_snps.vcf)]), (RodBindingCollection [(RodBinding name=variant2 source=/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/tmp/TRIO.filtered_indels.vcf)])] out=/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/tmp/TRIO.filtered_variants.vcf genotypemergeoption=null filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=null printComplexMerges=false filteredAreUncalled=false minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=true minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##GATKCommandLine.HaplotypeCaller=<ID=HaplotypeCaller,Version=3.4-46-gbc02625,Date="Thu Dec 07 12:23:36 UTC 2017",Epoch=1512649416706,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/MOTHER/mapping/MOTHER_dedup.realigned.bam, /hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/CHILD/mapping/CHILD_dedup.realigned.bam, /hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/FATHER/mapping/FATHER_dedup.realigned.bam] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] disable_read_filter=[] intervals=[/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/tmp/.queue/scatterGather/HaplotypeCaller-1-sg/temp_001_of_500/scatter.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=500 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false out=/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/tmp/.queue/scatterGather/HaplotypeCaller-1-sg/temp_001_of_500/TRIO.raw_variants.vcf likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN dbsnp=(RodBinding name=dbsnp source=/hpc/cog_bioinf/common_dbs/GATK_bundle/dbsnp_137.b37.vcf) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[ClippingRankSumTest, DepthPerSampleHC] excludeAnnotation=[] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE bamOutput=null bamWriterType=CALLED_HAPLOTYPES disableOptimizations=false annotateNDA=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 max_alternate_alleles=6 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false gcpHMM=10 pair_hmm_implementation=VECTOR_LOGLESS_CACHING pair_hmm_sub_implementation=ENABLE_ALL always_load_vector_logless_PairHMM_lib=false phredScaledGlobalReadMismappingRate=45 noFpga=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 includeUmappedReads=false useAllelesTrigger=false doNotRunPhysicalPhasing=true keepRG=null justDetermineActiveRegions=false dontGenotype=false dontUseSoftClippedBases=false captureAssemblyFailureBAM=false errorCorrectReads=false pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=10000 minReadsPerAlignmentStart=10 mergeVariantsViaLD=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##GATKCommandLine.SelectVariants.2=<ID=SelectVariants,Version=3.4-46-gbc02625,Date="Thu Dec 07 13:12:48 UTC 2017",Epoch=1512652368717,CommandLineOptions="analysis_type=SelectVariants input_file=[] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/TRIO.filtered_variants.vcf) discordance=(RodBinding name= source=UNBOUND) concordance=(RodBinding name= source=UNBOUND) out=/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/tmp/FATHER.filtered_variants.vcf sample_name=[FATHER] sample_expressions=null sample_file=null exclude_sample_name=[] exclude_sample_file=[] exclude_sample_expressions=[] selectexpressions=[] invertselect=false excludeNonVariants=false excludeFiltered=false preserveAlleles=false removeUnusedAlternates=false restrictAllelesTo=ALL keepOriginalAC=false keepOriginalDP=false mendelianViolation=false invertMendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_fraction=0.0 remove_fraction_genotypes=0.0 selectTypeToInclude=[] selectTypeToExclude=[] keepIDs=null excludeIDs=null fullyDecode=false justRead=false maxIndelSize=2147483647 minIndelSize=0 maxFilteredGenotypes=2147483647 minFilteredGenotypes=0 maxFractionFilteredGenotypes=1.0 minFractionFilteredGenotypes=0.0 setFilteredGtToNocall=false ALLOW_NONOVERLAPPING_COMMAND_LINE_SAMPLES=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##GATKCommandLine.SelectVariants=<ID=SelectVariants,Version=3.4-46-gbc02625,Date="Thu Dec 07 13:05:14 UTC 2017",Epoch=1512651914675,CommandLineOptions="analysis_type=SelectVariants input_file=[] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/TRIO.raw_variants.vcf) discordance=(RodBinding name= source=UNBOUND) concordance=(RodBinding name= source=UNBOUND) out=/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/tmp/TRIO.raw_indels.vcf sample_name=[] sample_expressions=null sample_file=null exclude_sample_name=[] exclude_sample_file=[] exclude_sample_expressions=[] selectexpressions=[] invertselect=false excludeNonVariants=false excludeFiltered=false preserveAlleles=false removeUnusedAlternates=false restrictAllelesTo=ALL keepOriginalAC=false keepOriginalDP=false mendelianViolation=false invertMendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_fraction=0.0 remove_fraction_genotypes=0.0 selectTypeToInclude=[INDEL] selectTypeToExclude=[] keepIDs=null excludeIDs=null fullyDecode=false justRead=false maxIndelSize=2147483647 minIndelSize=0 maxFilteredGenotypes=2147483647 minFilteredGenotypes=0 maxFractionFilteredGenotypes=1.0 minFractionFilteredGenotypes=0.0 setFilteredGtToNocall=false ALLOW_NONOVERLAPPING_COMMAND_LINE_SAMPLES=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##GATKCommandLine.VariantFiltration=<ID=VariantFiltration,Version=3.4-46-gbc02625,Date="Thu Dec 07 13:06:54 UTC 2017",Epoch=1512652014694,CommandLineOptions="analysis_type=VariantFiltration input_file=[] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] disable_read_filter=[] intervals=[/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/tmp/.queue/scatterGather/HardFilter-4-sg/temp_01_of_12/scatter.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/tmp/TRIO.raw_indels.vcf) mask=(RodBinding name= source=UNBOUND) out=/hpc/cog_bioinf/diagnostiek/users/Martin/Spiked_BAM/Add_variants/TRIO/tmp/.queue/scatterGather/HardFilter-4-sg/temp_01_of_12/TRIO.filtered_indels.vcf filterExpression=[QD < 2.0, FS > 200.0, ReadPosRankSum < -20.0] filterName=[INDEL_LowQualityDepth, INDEL_StrandBias, INDEL_ReadPosRankSumLow] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=0 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false invertFilterExpression=false invertGenotypeFilterExpression=false setFilteredGtToNocall=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##contig=<ID=1,length=249250621>
##contig=<ID=2,length=243199373>
##contig=<ID=3,length=198022430>
##contig=<ID=4,length=191154276>
##contig=<ID=5,length=180915260>
##contig=<ID=6,length=171115067>
##contig=<ID=7,length=159138663>
##contig=<ID=8,length=146364022>
##contig=<ID=9,length=141213431>
##contig=<ID=10,length=135534747>
##contig=<ID=11,length=135006516>
##contig=<ID=12,length=133851895>
##contig=<ID=13,length=115169878>
##contig=<ID=14,length=107349540>
##contig=<ID=15,length=102531392>
##contig=<ID=16,length=90354753>
##contig=<ID=17,length=81195210>
##contig=<ID=18,length=78077248>
##contig=<ID=19,length=59128983>
##contig=<ID=20,length=63025520>
##contig=<ID=21,length=48129895>
##contig=<ID=22,length=51304566>
##contig=<ID=X,length=155270560>
##contig=<ID=Y,length=59373566>
##contig=<ID=MT,length=16569>
##reference=file:///hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta
##source=SelectVariants
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	FATHER
1	12783	.	G	A	829.14	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.607;DP=11;FS=0.000;MQ=24.95;MQRankSum=-0.546;QD=24.39;ReadPosRankSum=-0.182;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,11:11:33:309,33,0
1	13116	rs201725126	T	G	2218.13	SNP_MappingQuality;SNP_StrandBias	AC=2;AF=1.00;AN=2;BaseQRankSum=1.281;ClippingRankSum=-0.374;DB;DP=18;FS=76.007;MQ=27.84;MQRankSum=-6.773;QD=28.08;ReadPosRankSum=0.574;SOR=1.496	GT:AD:DP:GQ:PL	1/1:0,18:18:54:804,54,0
1	13118	rs200579949	A	G	2218.13	SNP_MappingQuality;SNP_StrandBias	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.906;DB;DP=18;FS=75.231;MQ=27.84;MQRankSum=-6.577;QD=28.44;ReadPosRankSum=1.680;SOR=1.388	GT:AD:DP:GQ:PL	1/1:0,18:18:54:804,54,0
1	13302	rs180734498	C	T	2384.13	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.809;DB;DP=35;FS=28.085;MQ=27.97;MQRankSum=-10.355;QD=14.81;ReadPosRankSum=-5.596;SOR=2.326	GT:AD:DP:GQ:PL	1/1:0,35:35:99:965,105,0
1	13656	.	CAG	C	6249.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=-0.133;DP=56;FS=5.728;MQ=23.34;MQRankSum=-4.089;QD=27.49;ReadPosRankSum=1.360;SOR=3.598	GT:AD:DP:GQ:PL	0/1:9,47:56:99:1926,0,247
1	14542	.	A	G	91.17	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.862;ClippingRankSum=0.259;DP=14;FS=0.000;MQ=28.86;MQRankSum=-0.354;QD=3.80;ReadPosRankSum=2.475;SOR=0.037	GT:AD:DP:GQ:PL	0/1:12,2:14:48:48,0,342
1	14673	.	G	C	1029.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.617;ClippingRankSum=-1.465;DP=24;FS=24.020;MQ=28.94;MQRankSum=-0.237;QD=14.93;ReadPosRankSum=1.842;SOR=4.970	GT:AD:DP:GQ:PL	0/1:6,18:24:99:469,0,102
1	14677	rs201327123	G	A	111.16	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.193;DB;DP=24;FS=0.000;MQ=28.61;MQRankSum=-2.593;QD=2.42;ReadPosRankSum=-0.663;SOR=0.437	GT:AD:DP:GQ:PL	0/0:24,0:24:75:0,75,981
1	14699	.	C	G	504.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=-2.009;DP=15;FS=2.532;MQ=29.66;MQRankSum=-0.480;QD=8.86;ReadPosRankSum=0.106;SOR=1.079	GT:AD:DP:GQ:PL	0/1:5,10:15:99:234,0,101
1	14907	rs79585140	A	G	13022.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;ClippingRankSum=-0.108;DB;DP=128;FS=13.298;MQ=34.55;MQRankSum=0.179;QD=31.61;ReadPosRankSum=2.150;SOR=1.009	GT:AD:DP:GQ:PL	0/1:21,107:128:99:4106,0,490
1	14930	rs75454623	A	G	13937.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=-0.534;DB;DP=126;FS=6.754;MQ=35.42;MQRankSum=-0.496;QD=31.97;ReadPosRankSum=0.747;SOR=0.645	GT:AD:DP:GQ:PL	0/1:22,104:126:99:4066,0,567
1	16014	.	C	T	24.01	LowQual;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.358;DP=1;FS=0.000;MQ=22.41;MQRankSum=1.231;QD=12.00;ReadPosRankSum=1.231;SOR=2.204	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,27
1	16949	rs199745162	A	C	567.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105;ClippingRankSum=1.015;DB;DP=25;FS=13.600;MQ=23.78;MQRankSum=-5.030;QD=6.53;ReadPosRankSum=-0.988;SOR=0.118	GT:AD:DP:GQ:PL	0/1:16,9:25:99:170,0,412
1	16957	rs200658479	G	T	157.13	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.779;ClippingRankSum=0.350;DB;DP=32;FS=9.863;MQ=23.89;MQRankSum=3.608;QD=4.49;ReadPosRankSum=2.315;SOR=2.275	GT:AD:DP:GQ:PL	0/0:30,2:32:38:0,38,1017
1	16977	.	G	A	123.17	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=-0.600;DP=38;FS=8.425;MQ=23.75;MQRankSum=2.190;QD=1.32;ReadPosRankSum=1.954;SOR=1.963	GT:AD:DP:GQ:PL	0/1:33,5:38:31:31,0,850
1	17005	rs201833382	A	G	109.13	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.349;DB;DP=47;FS=5.371;MQ=24.17;MQRankSum=-1.420;QD=2.32;ReadPosRankSum=-0.708;SOR=1.587	GT:AD:DP:GQ:PL	0/1:37,10:47:99:140,0,1155
1	17006	.	A	G	183.16	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=4.325;ClippingRankSum=-1.097;DP=47;FS=26.826;MQ=24.17;MQRankSum=3.231;QD=1.64;ReadPosRankSum=2.196;SOR=4.402	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1747
1	17020	rs199740902	G	A	814.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=-0.052;DB;DP=49;FS=0.000;MQ=24.34;MQRankSum=-0.542;QD=5.16;ReadPosRankSum=1.430;SOR=0.744	GT:AD:DP:GQ:PL	0/1:33,16:49:99:313,0,957
1	17365	.	C	G	45.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.491;ClippingRankSum=0.075;DP=69;FS=17.260;MQ=31.65;MQRankSum=3.015;QD=0.75;ReadPosRankSum=1.668;SOR=2.828	GT:AD:DP:GQ:PL	0/0:66,3:69:72:0,72,2160
1	17385	rs201535981	G	A	617.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=-0.196;DB;DP=70;FS=7.256;MQ=30.15;MQRankSum=2.212;QD=3.17;ReadPosRankSum=-0.299;SOR=0.630	GT:AD:DP:GQ:PL	0/1:60,10:70:99:136,0,1722
1	17407	.	G	A	518.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.590;DP=80;FS=0.000;MQ=32.04;MQRankSum=0.470;QD=4.05;ReadPosRankSum=0.511;SOR=0.737	GT:AD:DP:GQ:PL	0/0:80,0:80:99:0,240,2878
1	17538	rs200046632	C	A	471.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=-0.337;DB;DP=84;FS=0.804;MQ=41.93;MQRankSum=-0.200;QD=2.79;ReadPosRankSum=2.369;SOR=0.565	GT:AD:DP:GQ:PL	0/1:77,7:84:47:47,0,2985
1	17614	rs201057270	G	A	168.30	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.311;ClippingRankSum=-0.392;DB;DP=8;FS=0.000;MQ=39.38;MQRankSum=-1.880;QD=4.10;ReadPosRankSum=-0.906;SOR=0.045	GT:AD:DP:GQ:PL	0/0:8,0:8:24:0,24,346
1	17626	.	G	A	11.65	LowQual;SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.270;DP=12;FS=0.000;MQ=39.23;MQRankSum=-1.448;QD=0.47;ReadPosRankSum=0.620;SOR=0.009	GT:AD:DP:GQ:PL	0/0:12,0:12:36:0,36,524
1	17697	.	G	C	105.13	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=1.406;DP=54;FS=0.000;MQ=38.80;MQRankSum=0.643;QD=1.95;ReadPosRankSum=0.725;SOR=0.004	GT:AD:DP:GQ:PL	0/1:46,8:54:99:136,0,1796
1	17716	.	G	A	139.13	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.887;DP=58;FS=0.000;MQ=38.68;MQRankSum=1.176;QD=2.40;ReadPosRankSum=1.291;SOR=0.004	GT:AD:DP:GQ:PL	0/1:50,8:58:99:170,0,2188
1	17722	.	A	G	390.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;ClippingRankSum=1.116;DP=58;FS=0.000;MQ=38.74;MQRankSum=0.199;QD=2.51;ReadPosRankSum=2.266;SOR=0.023	GT:AD:DP:GQ:PL	0/1:50,8:58:99:182,0,2110
1	17730	.	C	A	381.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=-0.740;DP=56;FS=0.000;MQ=38.80;MQRankSum=1.724;QD=2.43;ReadPosRankSum=1.340;SOR=0.023	GT:AD:DP:GQ:PL	0/1:48,8:56:99:185,0,2075
1	17746	.	A	G	891.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.705;ClippingRankSum=-0.330;DP=51;FS=0.000;MQ=38.79;MQRankSum=-0.320;QD=6.24;ReadPosRankSum=1.986;SOR=0.071	GT:AD:DP:GQ:PL	0/1:39,12:51:99:366,0,1476
1	19004	rs201619486	A	G	54.55	SNP_MappingQuality	AC=0;AF=0.00;AN=0;DB;DP=3;FS=0.000;MQ=21.67;QD=18.18;SOR=2.833	GT	./.
1	19190	.	GC	G	241.01	PASS	AC=2;AF=1.00;AN=2;DP=1;FS=0.000;MQ=21.88;QD=30.13;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,1:1:3:34,3,0
1	65797	.	T	C	40.85	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=-1.383;DP=7;FS=0.000;MQ=27.00;MQRankSum=-0.360;QD=1.02;ReadPosRankSum=-0.095;SOR=0.039	GT:AD:DP:GQ:PL	0/1:6,1:7:11:11,0,170
1	65872	.	T	G	349.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=-0.944;DP=7;FS=0.000;MQ=27.46;MQRankSum=-0.248;QD=10.00;ReadPosRankSum=-0.281;SOR=0.544	GT:AD:DP:GQ:PL	0/1:4,3:7:74:74,0,106
1	69270	rs201219564	A	G	318.90	SNP_MappingQuality	AC=0;AF=0.00;AN=0;DB;DP=11;FS=0.000;MQ=30.36;QD=28.99;SOR=4.977	GT	./.
1	69511	rs75062661	A	G	692.90	SNP_MappingQuality	AC=0;AF=0.00;AN=0;BaseQRankSum=1.583;ClippingRankSum=0.980;DB;DP=23;FS=0.000;MQ=33.49;MQRankSum=-1.734;QD=30.13;ReadPosRankSum=0.678;SOR=0.693	GT	./.
1	69897	rs200676709	T	C	321.91	SNP_MappingQuality	AC=0;AF=0.00;AN=0;DB;DP=9;FS=0.000;MQ=35.71;QD=34.61;SOR=3.056	GT	./.
1	129010	.	AATG	A	333.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.109;ClippingRankSum=1.109;DP=5;FS=0.000;MQ=24.56;MQRankSum=1.479;QD=27.81;ReadPosRankSum=-0.740;SOR=1.426	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
1	129285	.	G	A	159.62	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=-1.157;DP=8;FS=6.264;MQ=20.56;MQRankSum=-1.466;QD=12.28;ReadPosRankSum=0.231;SOR=3.056	GT:AD:DP:GQ:PL	0/1:2,6:8:25:127,0,25
1	136048	.	C	T	376.17	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;ClippingRankSum=-1.369;DP=9;FS=0.000;MQ=21.73;MQRankSum=2.418;QD=15.05;ReadPosRankSum=0.320;SOR=1.127	GT:AD:DP:GQ:PL	0/1:5,4:9:79:79,0,104
1	137578	.	G	A	63.18	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.084;DP=9;FS=0.000;MQ=21.08;MQRankSum=-0.868;QD=3.33;ReadPosRankSum=-0.868;SOR=1.085	GT:AD:DP:GQ:PL	0/0:9,0:9:27:0,27,234
1	137622	.	G	A	499.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.782;DP=13;FS=20.239;MQ=21.66;MQRankSum=-0.857;QD=9.80;ReadPosRankSum=-0.028;SOR=0.620	GT:AD:DP:GQ:PL	0/1:6,7:13:99:147,0,119
1	137825	rs147252685	G	A	956.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=-0.769;DB;DP=24;FS=4.681;MQ=26.26;MQRankSum=1.052;QD=13.67;ReadPosRankSum=0.709;SOR=0.422	GT:AD:DP:GQ:PL	0/1:16,8:24:99:181,0,388
1	138156	.	G	T	745.58	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;ClippingRankSum=-0.578;DP=8;FS=0.000;MQ=22.75;MQRankSum=1.386;QD=24.85;ReadPosRankSum=0.347;SOR=0.602	GT:AD:DP:GQ:PL	1/1:0,8:8:24:221,24,0
1	138593	.	G	T	95.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=1.545;DP=18;FS=1.806;MQ=30.29;MQRankSum=-0.345;QD=5.29;ReadPosRankSum=1.085;SOR=1.065	GT:AD:DP:GQ:PL	0/1:12,6:18:99:126,0,390
1	139213	.	A	G	1274.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.921;ClippingRankSum=-0.883;DP=100;FS=0.000;MQ=28.68;MQRankSum=0.683;QD=12.49;ReadPosRankSum=0.086;SOR=0.635	GT:AD:DP:GQ:PL	0/1:62,38:100:99:1305,0,3191
1	139233	.	C	A	1244.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;ClippingRankSum=-0.183;DP=113;FS=4.103;MQ=30.74;MQRankSum=0.230;QD=11.01;ReadPosRankSum=1.168;SOR=1.033	GT:AD:DP:GQ:PL	0/1:74,39:113:99:1275,0,3736
1	139781	.	G	A	213.59	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DP=2;FS=25.704;MQ=29.71;MQRankSum=-2.179;QD=23.73;ReadPosRankSum=-1.006;SOR=0.377	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
1	139841	rs62642133	T	G	254.32	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.513;DB;DP=32;FS=0.000;MQ=31.28;MQRankSum=-4.372;QD=2.40;ReadPosRankSum=1.199;SOR=0.433	GT:AD:DP:GQ:PL	0/0:29,3:32:16:0,16,862
1	324822	.	A	T	1599.89	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.152;DP=35;FS=6.106;MQ=36.22;MQRankSum=-3.810;QD=23.53;ReadPosRankSum=-1.381;SOR=1.261	GT:AD:DP:GQ:PL	0/1:16,19:35:99:546,0,536
1	325015	.	C	G	267.89	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.651;DP=14;FS=0.000;MQ=32.30;MQRankSum=2.180;QD=19.14;ReadPosRankSum=1.557;SOR=0.297	GT:AD:DP:GQ:PL	0/1:5,9:14:99:297,0,148
1	325075	.	G	C	207.24	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DP=5;FS=0.000;MQ=25.87;QD=25.91;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,5:5:15:150,15,0
1	325155	.	C	A	49.88	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MQ=33.35;QD=24.94;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
1	662029	rs200946230	G	A	129.97	SNP_MappingQuality	AC=0;AF=0.00;AN=0;DB;DP=6;FS=0.000;MQ=21.00;QD=21.66;SOR=3.912	GT	./.
1	662201	rs202070913	G	A	184.24	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=21.51;QD=23.03;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,3:3:9:78,9,0
1	662857	.	G	A	371.30	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DP=6;FS=0.000;MQ=24.15;QD=26.52;SOR=2.985	GT:AD:DP:GQ:PL	1/1:0,6:6:18:180,18,0
1	663097	rs142727405	G	C	1201.91	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.072;ClippingRankSum=-0.938;DB;DP=19;FS=0.000;MQ=23.14;MQRankSum=-1.588;QD=25.04;ReadPosRankSum=1.444;SOR=0.555	GT:AD:DP:GQ:PL	1/1:1,18:19:27:462,27,0
1	664271	.	C	A	128.95	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.155;DP=10;FS=0.000;MQ=20.66;MQRankSum=-1.261;QD=2.30;ReadPosRankSum=0.563;SOR=0.096	GT:AD:DP:GQ:PL	0/1:8,2:10:20:20,0,175
1	664397	.	C	T	36.17	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.277;DP=40;FS=0.000;MQ=22.46;MQRankSum=-0.822;QD=0.39;ReadPosRankSum=-0.080;SOR=0.013	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,119,1041
1	664468	rs200679184	G	T	253.10	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.025;DB;DP=40;FS=37.157;MQ=25.68;MQRankSum=-3.431;QD=1.46;ReadPosRankSum=3.743;SOR=1.522	GT:AD:DP:GQ:PL	0/1:35,5:40:12:12,0,954
1	675151	.	G	A	22.69	LowQual;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.573;DP=2;FS=3.680;MQ=21.27;MQRankSum=-1.203;QD=3.24;ReadPosRankSum=2.054;SOR=2.833	GT:AD:DP:GQ:PL	0/0:2,0:2:6:0,6,54
1	752894	rs3131971	T	C	2554.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MQ=39.81;QD=25.00;SOR=5.486	GT:AD:DP:GQ:PL	1/1:0,23:23:69:959,69,0
1	761957	rs59038458	A	AT	6913.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=38.03;QD=33.18;SOR=10.307	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1843,138,0
1	762273	rs3115849	G	A	13404.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=99;FS=0.000;MQ=35.62;QD=34.96;SOR=0.985	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3694,297,0
1	762589	rs71507461	G	C	6433.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;ClippingRankSum=-0.421;DB;DP=48;FS=0.000;MQ=36.56;MQRankSum=0.445;QD=32.62;ReadPosRankSum=1.030;SOR=3.188	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2116,144,0
1	762592	rs71507462	C	G	6395.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.642;ClippingRankSum=-1.030;DB;DP=46;FS=0.000;MQ=36.62;MQRankSum=1.320;QD=29.38;ReadPosRankSum=0.957;SOR=3.116	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2116,144,0
1	762601	rs71507463	T	C	5703.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.953;DB;DP=43;FS=0.000;MQ=36.89;MQRankSum=1.517;QD=30.79;ReadPosRankSum=0.416;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1931,129,0
1	762632	rs61768173	T	A	4270.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.949;ClippingRankSum=-0.286;DB;DP=41;FS=0.000;MQ=37.47;MQRankSum=1.190;QD=26.64;ReadPosRankSum=-1.130;SOR=3.841	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1532,123,0
1	792263	rs1044922	A	G	12078.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=97;FS=0.000;MQ=39.31;QD=28.38;SOR=4.909	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3791,291,0
1	792480	rs2905036	C	T	16441.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;FS=0.000;MQ=45.21;QD=27.01;SOR=2.553	GT:AD:DP:GQ:PL	1/1:0,121:121:99:4895,364,0
1	804115	rs9725068	G	A	1520.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.000;MQ=28.72;QD=30.42;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,10:10:30:310,30,0
1	804152	.	T	G	69.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.473;DP=16;FS=0.000;MQ=26.16;MQRankSum=-3.278;QD=4.32;ReadPosRankSum=-1.778;SOR=0.255	GT:AD:DP:GQ:PL	0/1:10,6:16:99:100,0,234
1	804168	.	C	A	69.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;ClippingRankSum=-1.482;DP=16;FS=0.000;MQ=29.11;MQRankSum=-3.459;QD=4.32;ReadPosRankSum=0.685;SOR=0.243	GT:AD:DP:GQ:PL	0/1:10,6:16:99:100,0,263
1	808631	rs11240779	G	A	5360.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=-2.007;DB;DP=44;FS=0.000;MQ=59.38;MQRankSum=-0.885;QD=34.14;ReadPosRankSum=1.168;SOR=1.012	GT:AD:DP:GQ:PL	0/1:24,20:44:99:744,0,882
1	808922	rs6594027	G	A	21770.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=166;FS=0.000;MQ=46.03;QD=33.32;SOR=0.986	GT:AD:DP:GQ:PL	1/1:0,166:166:99:7006,502,0
1	808928	rs11240780	C	T	16570.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.235;ClippingRankSum=-0.270;DB;DP=171;FS=0.000;MQ=46.47;MQRankSum=1.672;QD=32.49;ReadPosRankSum=0.722;SOR=0.606	GT:AD:DP:GQ:PL	0/1:86,85:171:99:2904,0,2851
1	819917	rs6605057	A	G	64.88	PASS	AC=0;AF=0.00;AN=0;DB;DP=2;FS=0.000;MQ=57.08;QD=32.44;SOR=2.303	GT	./.
1	861008	rs28521172	G	C	1358.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.000;MQ=60.00;QD=31.88;SOR=4.743	GT:AD:DP:GQ:PL	1/1:0,10:10:30:427,30,0
1	861630	rs2879816	G	A	4757.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.000;MQ=60.00;QD=27.70;SOR=8.015	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1841,129,0
1	866319	rs9988021	G	A	2342.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.000;MQ=60.00;QD=27.68;SOR=3.037	GT:AD:DP:GQ:PL	1/1:0,14:14:42:614,42,0
1	866511	rs60722469	C	CCCCT	2113.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.000;MQ=60.67;QD=33.03;SOR=2.494	GT:AD:DP:GQ:PL	1/1:0,18:18:54:809,54,0
1	871334	rs4072383	G	T	5929.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.00;QD=31.88;SOR=6.258	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1614,114,0
1	874950	rs79212057	T	TCCCTGGAGGACC	2025.86	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.806;ClippingRankSum=1.580;DB;DP=23;FS=18.003;MQ=60.00;MQRankSum=0.428;QD=34.93;ReadPosRankSum=-2.072;SOR=0.044	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,3141
1	876499	rs4372192	A	G	2898.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.000;MQ=60.00;QD=33.69;SOR=2.105	GT:AD:DP:GQ:PL	1/1:0,12:12:36:483,36,0
1	877715	rs6605066	C	G	1075.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.000;MQ=60.00;QD=28.18;SOR=1.445	GT:AD:DP:GQ:PL	1/1:0,12:12:36:506,36,0
1	877831	rs6672356	T	C	1840.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.000;MQ=60.00;QD=27.78;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,15:15:45:656,45,0
1	879676	rs6605067	G	A	14291.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;FS=0.000;MQ=59.94;QD=30.86;SOR=7.334	GT:AD:DP:GQ:PL	1/1:0,100:100:99:4512,307,0
1	879687	rs2839	T	C	13291.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;FS=0.000;MQ=59.94;QD=27.11;SOR=6.897	GT:AD:DP:GQ:PL	1/1:0,90:90:99:4255,286,0
1	880238	rs3748592	A	G	14272.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.000;MQ=60.00;QD=30.33;SOR=0.973	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3960,274,0
1	881627	rs2272757	G	A	10820.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.000;MQ=60.00;QD=29.00;SOR=4.264	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3305,226,0
1	883625	rs4970378	A	G	7115.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MQ=59.82;QD=33.61;SOR=1.165	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2277,162,0
1	883899	rs72631890	T	G	4026.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.721;ClippingRankSum=-0.188;DB;DP=110;FS=0.975;MQ=58.20;MQRankSum=3.545;QD=18.05;ReadPosRankSum=0.386;SOR=0.625	GT:AD:DP:GQ:PL	0/0:110,0:110:99:0,330,4565
1	884091	rs60085302	C	CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG	13873.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;FS=0.000;MQ=60.00;QD=28.76;SOR=2.670	GT:AD:DP:GQ:PL	1/1:0,111:111:99:4812,332,0
1	886788	rs10465242	G	A	11185.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;FS=0.000;MQ=59.92;QD=30.16;SOR=5.630	GT:AD:DP:GQ:PL	1/1:0,71:71:99:3035,213,0
1	886817	rs10465241	C	T	8869.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=59.90;QD=35.25;SOR=6.292	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2112,155,0
1	887298	rs74994989	C	T	545.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.121;DB;DP=36;FS=2.312;MQ=60.00;MQRankSum=-0.338;QD=15.58;ReadPosRankSum=0.672;SOR=1.131	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1524
1	887560	rs3748595	A	C	16572.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;FS=0.000;MQ=59.99;QD=29.45;SOR=1.037	GT:AD:DP:GQ:PL	1/1:0,113:113:99:4825,339,0
1	887801	rs3828047	A	G	24816.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.728;DB;DP=180;FS=0.000;MQ=57.60;MQRankSum=0.686;QD=26.62;ReadPosRankSum=-1.601;SOR=1.286	GT:AD:DP:GQ:PL	1/1:0,180:180:99:7736,541,0
1	888639	rs3748596	T	C	17658.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;FS=0.000;MQ=54.92;QD=29.66;SOR=0.996	GT:AD:DP:GQ:PL	1/1:0,123:123:99:5545,376,0
1	888659	rs3748597	T	C	17046.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;FS=0.000;MQ=55.96;QD=29.32;SOR=0.704	GT:AD:DP:GQ:PL	1/1:0,111:111:99:4994,337,0
1	889158	rs56262069	G	C	9802.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.000;MQ=60.00;QD=30.89;SOR=5.078	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3465,232,0
1	889159	rs13302945	A	C	9802.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.000;MQ=60.00;QD=27.27;SOR=5.107	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3465,232,0
1	889638	rs13303206	G	C	5894.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=60.00;QD=31.45;SOR=7.672	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1973,138,0
1	892745	rs13303227	G	A	6943.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MQ=60.00;QD=29.90;SOR=2.642	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2138,150,0
1	894573	rs13303010	G	A	13894.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;FS=0.000;MQ=60.00;QD=36.18;SOR=3.195	GT:AD:DP:GQ:PL	1/1:0,109:109:99:4639,327,0
1	896271	rs112905931	C	T	214.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=60.00;QD=29.97;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
1	897325	rs4970441	G	C	22994.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;FS=0.000;MQ=60.00;QD=29.63;SOR=0.930	GT:AD:DP:GQ:PL	1/1:0,159:159:99:6675,475,0
1	897564	rs13303229	T	C	26992.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=204;FS=0.000;MQ=59.97;QD=32.32;SOR=1.104	GT:AD:DP:GQ:PL	1/1:0,204:204:99:8596,613,0
1	898323	rs6605071	T	C	10873.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.000;MQ=60.00;QD=30.46;SOR=1.261	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3184,225,0
1	899928	rs6677386	G	C	5282.90	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;ClippingRankSum=1.446;DB;DP=47;FS=9.367;MQ=60.18;MQRankSum=0.415;QD=27.63;ReadPosRankSum=0.157;SOR=4.090	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2063,141,0
1	899937	rs143296006	G	T	5375.90	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.401;ClippingRankSum=-1.069;DB;DP=44;FS=10.607;MQ=60.19;MQRankSum=1.702;QD=28.39;ReadPosRankSum=0.859;SOR=4.724	GT:AD:DP:GQ:PL	1/1:0,44:44:99:2057,138,0
1	899938	rs147467971	G	C	5375.90	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;ClippingRankSum=-0.316;DB;DP=43;FS=10.607;MQ=60.19;MQRankSum=-0.286;QD=33.68;ReadPosRankSum=0.859;SOR=4.724	GT:AD:DP:GQ:PL	1/1:0,43:43:99:2057,138,0
1	899942	rs71509448	G	A	5434.90	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;ClippingRankSum=-1.732;DB;DP=46;FS=10.342;MQ=60.18;MQRankSum=-0.102;QD=33.83;ReadPosRankSum=1.004;SOR=4.589	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2070,138,0
1	899989	rs6669071	A	C	3303.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MQ=59.58;QD=27.76;SOR=4.205	GT:AD:DP:GQ:PL	1/1:0,29:29:90:1350,90,0
1	900001	rs28754834	G	A	2628.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MQ=59.48;QD=32.80;SOR=3.767	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1035,69,0
1	900009	rs6704181	C	G	2358.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.000;MQ=59.42;QD=26.46;SOR=3.830	GT:AD:DP:GQ:PL	1/1:0,19:19:60:900,60,0
1	900010	.	G	GC	2349.86	PASS	AC=2;AF=1.00;AN=2;DP=18;FS=0.000;MQ=59.38;QD=30.15;SOR=3.657	GT:AD:DP:GQ:PL	1/1:0,18:18:60:900,60,0
1	900285	rs4970435	C	T	8192.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.000;MQ=60.00;QD=26.70;SOR=5.716	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2115,141,0
1	900286	rs4970434	A	G	8236.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.000;MQ=60.00;QD=30.15;SOR=5.728	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2115,141,0
1	900298	rs71628926	C	G	2098.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.632;DB;DP=52;FS=1.504;MQ=60.00;MQRankSum=-0.643;QD=16.26;ReadPosRankSum=-1.039;SOR=0.382	GT:AD:DP:GQ:PL	0/1:27,25:52:99:883,0,1002
1	900972	rs9697711	T	G	372.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=60.00;QD=34.22;SOR=1.402	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
1	901023	rs13303351	T	C	144.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=29.75;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
1	909247	rs72631892	C	T	523.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.007;DB;DP=33;FS=5.864;MQ=60.00;MQRankSum=1.247;QD=15.85;ReadPosRankSum=0.793;SOR=1.128	GT:AD:DP:GQ:PL	0/1:17,16:33:99:554,0,650
1	909419	rs28548431	C	T	1907.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=-1.479;DB;DP=39;FS=1.617;MQ=60.00;MQRankSum=-0.289;QD=18.89;ReadPosRankSum=-0.813;SOR=0.502	GT:AD:DP:GQ:PL	0/1:20,19:39:99:701,0,750
1	909768	rs2340593	A	G	14195.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;FS=0.000;MQ=60.00;QD=34.78;SOR=0.944	GT:AD:DP:GQ:PL	1/1:0,100:100:99:4205,300,0
1	910438	rs6685581	A	G	269.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=33.60;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
1	911595	rs7417106	A	G	6615.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=60.00;QD=32.43;SOR=0.853	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2153,156,0
1	912103	rs9803017	G	A	1940.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=-1.723;DB;DP=16;FS=0.000;MQ=60.41;MQRankSum=0.121;QD=32.56;ReadPosRankSum=0.558;SOR=5.630	GT:AD:DP:GQ:PL	0/1:1,15:16:28:578,0,28
1	912126	rs75056944	G	A	1466.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.053;DB;DP=8;FS=0.000;MQ=60.63;MQRankSum=0.998;QD=31.11;ReadPosRankSum=1.523;SOR=5.610	GT:AD:DP:GQ:PL	0/1:1,7:8:46:369,0,46
1	912149	.	A	G	415.45	PASS	AC=2;AF=1.00;AN=2;DP=1;FS=0.000;MQ=55.03;QD=28.42;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,1:1:6:90,6,0
1	914192	rs2340595	G	C	4905.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.000;MQ=60.00;QD=29.34;SOR=5.229	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1453,102,0
1	914333	rs13302979	C	G	4476.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.305;DB;DP=92;FS=1.794;MQ=59.91;MQRankSum=-1.648;QD=17.63;ReadPosRankSum=1.651;SOR=0.512	GT:AD:DP:GQ:PL	0/1:40,52:92:99:1902,0,1449
1	914414	.	CGAA	C	5185.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.971;ClippingRankSum=-0.467;DP=122;FS=0.000;MQ=60.00;MQRankSum=-0.242;QD=18.65;ReadPosRankSum=-0.686;SOR=0.700	GT:AD:DP:GQ:PL	0/1:67,55:122:99:2101,0,2636
1	914852	rs13303368	G	C	7373.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.246;ClippingRankSum=-1.470;DB;DP=129;FS=0.522;MQ=59.95;MQRankSum=0.291;QD=17.07;ReadPosRankSum=-0.770;SOR=0.612	GT:AD:DP:GQ:PL	0/1:67,62:129:99:2218,0,2414
1	914876	rs13302983	T	C	20286.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;FS=0.000;MQ=59.90;QD=29.93;SOR=0.898	GT:AD:DP:GQ:PL	1/1:0,143:143:99:6185,433,0
1	914940	rs13303033	T	C	9940.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.113;DB;DP=172;FS=4.022;MQ=59.95;MQRankSum=0.606;QD=19.57;ReadPosRankSum=-0.170;SOR=0.649	GT:AD:DP:GQ:PL	0/1:79,93:172:99:3497,0,2835
1	915227	rs13303355	A	G	25234.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=179;FS=0.000;MQ=59.96;QD=33.06;SOR=1.885	GT:AD:DP:GQ:PL	1/1:0,179:179:99:7755,539,0
1	916549	rs6660139	A	G	4139.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=-0.706;DB;DP=83;FS=1.178;MQ=60.00;MQRankSum=0.072;QD=16.43;ReadPosRankSum=-0.635;SOR=0.805	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1550,0,1446
1	916590	rs28566954	G	A	4117.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;ClippingRankSum=0.846;DB;DP=56;FS=4.803;MQ=60.00;MQRankSum=1.488;QD=21.01;ReadPosRankSum=0.907;SOR=0.384	GT:AD:DP:GQ:PL	0/1:29,27:56:99:1021,0,1056
1	917640	rs41285816	G	A	1610.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=-0.563;DB;DP=25;FS=6.827;MQ=60.00;MQRankSum=1.256;QD=16.96;ReadPosRankSum=-0.645;SOR=2.263	GT:AD:DP:GQ:PL	0/1:14,11:25:99:400,0,511
1	935222	rs2298214	C	A	3401.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.043;DB;DP=59;FS=6.521;MQ=59.85;MQRankSum=-1.792;QD=19.78;ReadPosRankSum=0.958;SOR=1.667	GT:AD:DP:GQ:PL	0/1:27,32:59:99:1116,0,1013
1	948846	rs3841266	T	TA	5007.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=60.09;QD=28.59;SOR=5.784	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2047,141,0
1	948870	rs4615788	C	G	5862.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MQ=59.58;QD=33.87;SOR=3.998	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2162,147,0
1	948921	rs15842	T	C	7521.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.016;ClippingRankSum=1.713;DB;DP=55;FS=0.000;MQ=59.43;MQRankSum=-1.519;QD=33.19;ReadPosRankSum=-1.287;SOR=0.719	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2358,166,0
1	948929	.	GGCCCACA	G	2096.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=-0.121;DP=47;FS=6.380;MQ=59.03;MQRankSum=-1.649;QD=17.32;ReadPosRankSum=-0.222;SOR=0.343	GT:AD:DP:GQ:PL	0/1:19,28:47:99:1108,0,713
1	949608	rs1921	G	A	9502.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.647;DB;DP=170;FS=4.076;MQ=60.00;MQRankSum=1.359;QD=16.00;ReadPosRankSum=2.035;SOR=0.658	GT:AD:DP:GQ:PL	0/1:92,78:170:99:2856,0,3430
1	949654	rs8997	A	G	24404.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=165;FS=0.000;MQ=60.00;QD=34.96;SOR=0.743	GT:AD:DP:GQ:PL	1/1:0,165:165:99:6964,494,0
1	949925	rs2799070	C	T	7943.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.000;MQ=60.00;QD=29.38;SOR=3.996	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2441,176,0
1	957898	rs2799064	G	T	1635.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.899;ClippingRankSum=-0.315;DB;DP=74;FS=0.000;MQ=60.38;MQRankSum=-0.718;QD=21.24;ReadPosRankSum=0.629;SOR=0.468	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,221,3079
1	970549	.	TGG	T,TG	1393.52	PASS	AC=0,1;AF=0.00,0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=-0.380;DP=17;FS=27.757;MQ=60.22;MQRankSum=-0.344;QD=14.22;ReadPosRankSum=-0.319;SOR=7.070	GT:AD:DP:GQ:PL	0/2:4,2,11:17:31:221,217,382,0,63,31
1	976514	rs79290478	C	A	1661.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.427;DB;DP=13;FS=0.000;MQ=58.97;MQRankSum=-0.105;QD=27.69;ReadPosRankSum=-1.992;SOR=1.812	GT:AD:DP:GQ:PL	0/1:8,5:13:99:173,0,302
1	977330	rs2799066	T	C	3832.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.876;DB;DP=38;FS=28.115;MQ=60.00;MQRankSum=0.806;QD=28.60;ReadPosRankSum=0.119;SOR=0.050	GT:AD:DP:GQ:PL	0/1:17,21:38:99:739,0,613
1	977570	rs2710876	G	A	2264.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=-0.132;DB;DP=36;FS=2.414;MQ=60.00;MQRankSum=-0.730;QD=24.35;ReadPosRankSum=-1.001;SOR=1.139	GT:AD:DP:GQ:PL	0/1:20,16:36:99:562,0,740
1	978603	rs138543546	CCT	C	6540.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.459;ClippingRankSum=-0.836;DB;DP=103;FS=4.331;MQ=60.21;MQRankSum=0.131;QD=18.02;ReadPosRankSum=1.017;SOR=0.445	GT:AD:DP:GQ:PL	0/1:57,46:103:99:1743,0,2384
1	980460	rs3128097	G	A	1671.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=-0.494;DB;DP=18;FS=3.282;MQ=60.00;MQRankSum=-0.494;QD=22.89;ReadPosRankSum=1.975;SOR=1.545	GT:AD:DP:GQ:PL	0/1:12,6:18:99:202,0,471
1	981087	rs3128098	A	G	18040.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.048;ClippingRankSum=-0.714;DB;DP=220;FS=3.427;MQ=60.00;MQRankSum=-0.296;QD=25.44;ReadPosRankSum=-0.956;SOR=0.535	GT:AD:DP:GQ:PL	0/1:115,105:220:99:3732,0,4166
1	981931	rs2465128	A	G	6419.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=1.629;DB;DP=90;FS=15.563;MQ=60.00;MQRankSum=1.447;QD=20.98;ReadPosRankSum=0.483;SOR=0.289	GT:AD:DP:GQ:PL	0/1:49,41:90:99:1373,0,1769
1	982513	rs3128101	T	C	1868.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=-1.200;DB;DP=27;FS=2.083;MQ=60.00;MQRankSum=-0.206;QD=25.25;ReadPosRankSum=-0.320;SOR=0.414	GT:AD:DP:GQ:PL	0/1:16,11:27:99:389,0,598
1	982941	rs3128102	T	C	18604.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.825;ClippingRankSum=-0.335;DB;DP=245;FS=3.341;MQ=60.00;MQRankSum=-0.191;QD=23.73;ReadPosRankSum=-0.140;SOR=0.496	GT:AD:DP:GQ:PL	0/1:128,117:245:99:4214,0,4593
1	982994	rs10267	T	C	18618.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.020;ClippingRankSum=-0.142;DB;DP=254;FS=4.347;MQ=60.00;MQRankSum=-0.928;QD=23.07;ReadPosRankSum=-0.026;SOR=0.423	GT:AD:DP:GQ:PL	0/1:132,122:254:99:4446,0,4869
1	984147	rs57668569	CAAAAAAAAAAA	C	1284.57	PASS	AC=1;AF=0.500;AN=2;DB;DP=12;FS=0.000;MQ=60.00;QD=31.33;SOR=1.382	GT:AD:DP:GQ:PL	0/1:2,10:12:38:414,0,38
1	984171	rs140904842	CAG	C	1571.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=1.747;DB;DP=18;FS=4.534;MQ=60.00;MQRankSum=0.582;QD=29.11;ReadPosRankSum=1.402;SOR=0.602	GT:AD:DP:GQ:PL	0/1:3,15:18:81:609,0,81
1	984302	rs9442391	T	C	721.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;ClippingRankSum=0.550;DB;DP=11;FS=26.733;MQ=60.00;MQRankSum=-0.462;QD=24.03;ReadPosRankSum=0.902;SOR=4.610	GT:AD:DP:GQ:PL	0/1:5,6:11:99:230,0,106
1	985266	rs2275813	C	T	5537.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.018;ClippingRankSum=-0.867;DB;DP=106;FS=8.172;MQ=60.00;MQRankSum=-0.371;QD=16.15;ReadPosRankSum=2.789;SOR=0.422	GT:AD:DP:GQ:PL	0/1:58,48:106:99:1706,0,2092
1	985443	rs71576592	AG	A	493.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.084;ClippingRankSum=-0.651;DB;DP=67;FS=4.163;MQ=60.00;MQRankSum=-0.173;QD=7.83;ReadPosRankSum=2.449;SOR=1.184	GT:AD:DP:GQ:PL	0/0:66,1:67:99:0,171,2422
1	985446	rs2275812	G	T	3062.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.362;ClippingRankSum=-1.237;DB;DP=69;FS=5.169;MQ=60.00;MQRankSum=-0.088;QD=15.31;ReadPosRankSum=1.649;SOR=0.415	GT:AD:DP:GQ:PL	0/1:30,39:69:99:1163,0,1063
1	985449	rs56255212	G	A	5729.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.882;ClippingRankSum=1.335;DB;DP=69;FS=4.125;MQ=60.00;MQRankSum=-0.367;QD=28.08;ReadPosRankSum=-2.502;SOR=0.376	GT:AD:DP:GQ:PL	1/1:1,68:69:99:2390,178,0
1	985450	.	G	A	525.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.502;ClippingRankSum=1.964;DP=68;FS=2.778;MQ=60.00;MQRankSum=-0.387;QD=8.61;ReadPosRankSum=2.029;SOR=0.989	GT:AD:DP:GQ:PL	0/0:67,1:68:99:0,177,2472
1	985569	rs72631894	G	A	1667.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.336;DB;DP=89;FS=0.835;MQ=60.00;MQRankSum=-0.865;QD=18.73;ReadPosRankSum=-0.125;SOR=0.755	GT:AD:DP:GQ:PL	0/0:89,0:89:99:0,267,3739
1	986443	rs2710887	C	T	8004.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.767;ClippingRankSum=-1.134;DB;DP=87;FS=0.000;MQ=59.93;MQRankSum=1.567;QD=26.07;ReadPosRankSum=0.626;SOR=0.707	GT:AD:DP:GQ:PL	0/1:41,46:87:99:1770,0,1468
1	987200	rs9803031	C	T	8895.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=-0.568;DB;DP=131;FS=10.548;MQ=60.00;MQRankSum=0.723;QD=23.66;ReadPosRankSum=0.545;SOR=1.125	GT:AD:DP:GQ:PL	0/1:67,64:131:99:2349,0,2457
1	988932	rs2710871	G	C	4017.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.002;ClippingRankSum=-3.235;DB;DP=47;FS=0.000;MQ=60.00;MQRankSum=0.203;QD=26.09;ReadPosRankSum=0.480;SOR=0.728	GT:AD:DP:GQ:PL	0/1:19,28:47:99:1072,0,656
1	990280	rs4275402	C	T	2613.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.349;ClippingRankSum=1.924;DB;DP=25;FS=1.536;MQ=60.00;MQRankSum=0.844;QD=34.84;ReadPosRankSum=0.374;SOR=0.353	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1018,75,0
1	990380	rs3121561	C	T	537.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.189;ClippingRankSum=1.720;DB;DP=33;FS=0.000;MQ=60.00;MQRankSum=0.168;QD=19.89;ReadPosRankSum=0.607;SOR=0.665	GT:AD:DP:GQ:PL	0/0:33,0:33:98:0,98,1329
1	990417	rs2465136	T	C	438.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.215;ClippingRankSum=-0.271;DB;DP=25;FS=4.501;MQ=60.00;MQRankSum=-0.940;QD=20.86;ReadPosRankSum=-0.688;SOR=0.275	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,1100
1	990517	rs2710872	C	T	1339.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=-0.801;DB;DP=13;FS=1.553;MQ=60.00;MQRankSum=0.260;QD=26.78;ReadPosRankSum=-0.447;SOR=0.399	GT:AD:DP:GQ:PL	0/1:4,9:13:99:361,0,133
1	1006990	rs4326571	G	A	497.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=-1.474;DB;DP=6;FS=3.332;MQ=60.00;MQRankSum=-0.829;QD=17.78;ReadPosRankSum=-0.921;SOR=1.954	GT:AD:DP:GQ:PL	0/1:3,3:6:99:113,0,116
1	1007203	rs4633229	A	G	1786.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=-2.128;DB;DP=26;FS=0.000;MQ=60.00;MQRankSum=0.572;QD=17.69;ReadPosRankSum=-0.480;SOR=0.833	GT:AD:DP:GQ:PL	0/1:15,11:26:99:410,0,588
1	1007432	rs4333796	G	A	4495.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.029;DB;DP=82;FS=0.448;MQ=59.92;MQRankSum=-1.192;QD=16.41;ReadPosRankSum=-0.454;SOR=0.747	GT:AD:DP:GQ:PL	0/1:38,44:82:99:1642,0,1371
1	1009234	rs9442366	T	C	145.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.731;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.731;QD=29.11;ReadPosRankSum=0.731;SOR=1.447	GT:AD:DP:GQ:PL	0/1:1,1:2:34:39,0,34
1	1017341	rs1133647	G	T	43.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=1.231;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=0.358;QD=14.38;ReadPosRankSum=-0.358;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,2:3:36:71,0,36
1	1018144	rs9442395	T	C	3709.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=-1.685;DB;DP=63;FS=11.753;MQ=59.92;MQRankSum=-0.574;QD=20.38;ReadPosRankSum=-0.018;SOR=1.434	GT:AD:DP:GQ:PL	0/1:27,36:63:99:1308,0,975
1	1019175	rs2298215	C	G	2725.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=-0.449;DB;DP=56;FS=3.759;MQ=60.00;MQRankSum=-1.239;QD=16.72;ReadPosRankSum=1.971;SOR=1.078	GT:AD:DP:GQ:PL	0/1:31,25:56:99:939,0,2409
1	1019180	rs9442396	T	C	2698.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=-2.424;DB;DP=53;FS=2.689;MQ=60.00;MQRankSum=-0.229;QD=16.46;ReadPosRankSum=-0.306;SOR=1.015	GT:AD:DP:GQ:PL	0/1:30,23:53:99:872,0,2381
1	1020406	rs9442397	T	C	1530.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.496;ClippingRankSum=-1.847;DB;DP=37;FS=3.918;MQ=59.82;MQRankSum=1.332;QD=14.44;ReadPosRankSum=1.769;SOR=0.107	GT:AD:DP:GQ:PL	0/1:26,11:37:99:373,0,1025
1	1021415	rs3737728	A	G	3816.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.771;ClippingRankSum=-0.609;DB;DP=79;FS=0.000;MQ=60.00;MQRankSum=-1.177;QD=17.75;ReadPosRankSum=2.869;SOR=0.613	GT:AD:DP:GQ:PL	0/1:44,35:79:99:1291,0,1663
1	1026310	rs183697514	G	C	1350.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=-1.915;DB;DP=73;FS=2.217;MQ=60.00;MQRankSum=0.092;QD=18.49;ReadPosRankSum=0.383;SOR=0.887	GT:AD:DP:GQ:PL	0/1:34,39:73:99:1381,0,1121
1	1026707	rs4074137	C	A	3515.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.613;DB;DP=51;FS=2.202;MQ=60.00;MQRankSum=-0.322;QD=20.21;ReadPosRankSum=0.716;SOR=0.935	GT:AD:DP:GQ:PL	0/1:25,26:51:99:933,0,932
1	1026801	rs4562563	T	A	3107.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=-0.015;DB;DP=48;FS=6.429;MQ=60.00;MQRankSum=0.311;QD=17.46;ReadPosRankSum=1.456;SOR=0.686	GT:AD:DP:GQ:PL	0/1:27,21:48:99:773,0,1034
1	1109252	rs5010607	A	G	90.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.684;ClippingRankSum=-0.684;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=-0.684;QD=18.11;ReadPosRankSum=0.322;SOR=0.307	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	1115210	rs11260546	G	A	1322.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=-0.164;DB;DP=53;FS=13.910;MQ=60.00;MQRankSum=-0.118;QD=24.95;ReadPosRankSum=-0.723;SOR=1.874	GT:AD:DP:GQ:PL	0/1:21,32:53:99:1353,0,1552
1	1115213	rs11260547	G	T	1354.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.247;DB;DP=56;FS=13.394;MQ=60.00;MQRankSum=0.619;QD=24.18;ReadPosRankSum=-0.567;SOR=1.850	GT:AD:DP:GQ:PL	0/1:21,35:56:99:1385,0,1549
1	1116032	.	C	A	694.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.707;ClippingRankSum=-0.052;DP=53;FS=0.000;MQ=60.00;MQRankSum=0.515;QD=13.35;ReadPosRankSum=3.763;SOR=0.597	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,159,2198
1	1116311	rs12096125	A	G	83.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;ClippingRankSum=1.123;DB;DP=14;FS=0.000;MQ=60.00;MQRankSum=0.143;QD=5.94;ReadPosRankSum=-0.674;SOR=0.138	GT:AD:DP:GQ:PL	0/1:10,4:14:99:114,0,384
1	1117398	rs12097586	A	G	705.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=-0.037;DB;DP=41;FS=1.307;MQ=59.92;MQRankSum=-0.503;QD=17.20;ReadPosRankSum=0.885;SOR=0.437	GT:AD:DP:GQ:PL	0/1:21,20:41:99:736,0,791
1	1118212	rs10907171	T	C	1068.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.923;ClippingRankSum=-1.012;DB;DP=46;FS=19.758;MQ=60.00;MQRankSum=0.026;QD=22.73;ReadPosRankSum=1.658;SOR=0.086	GT:AD:DP:GQ:PL	0/1:18,28:46:99:1099,0,619
1	1132742	.	A	C	29.46	LowQual;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.818;ClippingRankSum=-0.191;DP=7;FS=25.855;MQ=60.00;MQRankSum=-1.148;QD=2.68;ReadPosRankSum=-1.722;SOR=2.773	GT:AD:DP:GQ:PL	0/0:6,1:7:11:0,11,442
1	1132747	.	T	C	29.46	LowQual;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.693;ClippingRankSum=-0.593;DP=7;FS=26.462;MQ=60.00;MQRankSum=-1.324;QD=2.68;ReadPosRankSum=-1.506;SOR=2.773	GT:AD:DP:GQ:PL	0/0:6,1:7:11:0,11,442
1	1132749	.	A	C	29.46	LowQual;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.679;ClippingRankSum=-0.096;DP=7;FS=25.855;MQ=60.00;MQRankSum=0.574;QD=2.68;ReadPosRankSum=-1.913;SOR=2.773	GT:AD:DP:GQ:PL	0/0:6,1:7:11:0,11,442
1	1149661	rs35878953	C	T	869.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.582;DB;DP=22;FS=18.073;MQ=60.00;MQRankSum=-0.342;QD=15.25;ReadPosRankSum=0.662;SOR=0.026	GT:AD:DP:GQ:PL	0/1:10,12:22:99:452,0,335
1	1156131	rs2887286	T	C	836.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.379;ClippingRankSum=-0.022;DB;DP=66;FS=4.298;MQ=60.00;MQRankSum=1.192;QD=15.78;ReadPosRankSum=-1.723;SOR=0.350	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,198,2826
1	1158631	rs6603781	A	G	7879.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MQ=60.00;QD=25.47;SOR=2.760	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2319,162,0
1	1181802	.	C	T	457.28	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.170;DP=9;FS=0.000;MQ=60.00;MQRankSum=1.383;QD=25.40;ReadPosRankSum=0.946;SOR=0.616	GT:AD:DP:GQ:PL	0/0:9,0:9:27:0,27,393
1	1196863	rs6659787	T	C	8432.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MQ=60.00;QD=29.79;SOR=6.953	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2964,207,0
1	1197698	rs72631900	T	C	853.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=-0.601;DB;DP=56;FS=4.165;MQ=60.00;MQRankSum=0.255;QD=15.23;ReadPosRankSum=-1.270;SOR=1.339	GT:AD:DP:GQ:PL	0/1:31,25:56:99:884,0,1198
1	1222690	rs115316182	C	T	3472.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.273;ClippingRankSum=-1.103;DB;DP=90;FS=5.365;MQ=60.00;MQRankSum=-0.348;QD=19.08;ReadPosRankSum=0.855;SOR=1.023	GT:AD:DP:GQ:PL	0/0:90,0:90:99:0,271,3920
1	1223480	.	C	T	40.13	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.177;DP=22;FS=0.000;MQ=60.00;MQRankSum=-0.908;QD=1.43;ReadPosRankSum=0.389;SOR=0.127	GT:AD:DP:GQ:PL	0/0:22,0:22:63:0,63,714
1	1226512	rs114257304	G	A	1398.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.065;DB;DP=67;FS=1.432;MQ=60.00;MQRankSum=0.246;QD=20.87;ReadPosRankSum=1.228;SOR=0.534	GT:AD:DP:GQ:PL	0/1:28,39:67:99:1429,0,1031
1	1229111	.	A	ACGCCCCTGCCCTGGAGGCCC	4158.86	PASS	AC=2;AF=1.00;AN=2;DP=15;FS=0.000;MQ=59.63;QD=24.04;SOR=1.875	GT:AD:DP:GQ:PL	1/1:0,15:15:69:1100,69,0
1	1229680	rs2477781	G	T	8912.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.573;DB;DP=114;FS=1.396;MQ=60.00;MQRankSum=0.555;QD=24.48;ReadPosRankSum=-1.075;SOR=0.789	GT:AD:DP:GQ:PL	0/1:54,60:114:99:2169,0,1973
1	1237604	rs2296475	T	C	2535.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=60.00;QD=26.46;SOR=6.804	GT:AD:DP:GQ:PL	1/1:0,22:22:66:940,66,0
1	1239339	rs11260584	T	G	17621.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;FS=0.000;MQ=60.00;QD=32.24;SOR=6.568	GT:AD:DP:GQ:PL	1/1:0,133:133:99:5726,399,0
1	1242707	rs2274262	A	G	13240.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;FS=0.000;MQ=60.00;QD=31.52;SOR=2.916	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3744,269,0
1	1242983	rs2887285	G	A	2643.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=60.00;QD=31.41;SOR=0.859	GT:AD:DP:GQ:PL	1/1:0,22:22:66:962,66,0
1	1243896	rs61766198	C	T	2270.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MQ=61.75;QD=27.97;SOR=8.051	GT:AD:DP:GQ:PL	1/1:0,23:23:69:975,69,0
1	1245368	rs11590283	G	A	9352.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;FS=0.000;MQ=60.00;QD=22.14;SOR=6.565	GT:AD:DP:GQ:PL	1/1:0,71:71:99:3066,214,0
1	1246004	rs2296474	A	G	14762.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;FS=0.000;MQ=60.00;QD=28.98;SOR=2.632	GT:AD:DP:GQ:PL	1/1:0,102:102:99:4323,306,0
1	1247494	rs12103	T	C	10104.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.000;MQ=60.00;QD=27.28;SOR=1.464	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2816,198,0
1	1247578	.	T	TGG	811.30	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.179;ClippingRankSum=1.317;DP=3;FS=0.000;MQ=60.00;MQRankSum=-0.763;QD=18.03;ReadPosRankSum=-1.733;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,3:3:10:91,10,0
1	1249187	rs12142199	G	A	34036.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=251;FS=0.000;MQ=60.00;QD=27.99;SOR=1.056	GT:AD:DP:GQ:PL	1/1:0,251:251:99:10656,752,0
1	1249489	rs72631902	C	G	2471.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=-0.697;DB;DP=71;FS=7.001;MQ=60.00;MQRankSum=1.193;QD=16.70;ReadPosRankSum=4.046;SOR=0.650	GT:AD:DP:GQ:PL	0/1:36,35:71:99:1266,0,1307
1	1254136	rs4970432	G	A	11382.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;FS=0.000;MQ=60.00;QD=30.61;SOR=6.146	GT:AD:DP:GQ:PL	1/1:0,80:80:99:3351,239,0
1	1254436	rs1886773	A	G	18048.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;FS=0.000;MQ=60.00;QD=30.10;SOR=1.236	GT:AD:DP:GQ:PL	1/1:0,120:120:99:5525,370,0
1	1254443	rs1886772	G	A	18250.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;FS=0.000;MQ=60.00;QD=36.92;SOR=1.184	GT:AD:DP:GQ:PL	1/1:0,124:124:99:5646,379,0
1	1254841	rs10907179	C	G	12846.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;FS=0.000;MQ=60.00;QD=34.85;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3851,279,0
1	1258246	rs3845293	A	C	798.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MQ=60.00;QD=35.47;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,7:7:21:304,21,0
1	1260168	rs61766199	C	A	1673.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.000;MQ=60.00;QD=29.89;SOR=3.952	GT:AD:DP:GQ:PL	1/1:0,15:15:44:440,44,0
1	1262591	rs2296472	C	T	15813.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;FS=0.000;MQ=60.00;QD=25.82;SOR=1.930	GT:AD:DP:GQ:PL	1/1:0,123:123:99:5223,369,0
1	1262966	rs307349	C	T	11367.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;FS=0.000;MQ=60.00;QD=36.01;SOR=0.966	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3642,253,0
1	1263144	rs307350	G	A	7645.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MQ=60.00;QD=34.52;SOR=3.761	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2236,162,0
1	1268847	rs307378	T	G	18510.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;FS=0.000;MQ=60.00;QD=29.06;SOR=0.990	GT:AD:DP:GQ:PL	1/1:0,118:118:99:4940,353,0
1	1269554	rs307377	T	C	16173.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;FS=0.000;MQ=60.00;QD=35.86;SOR=1.752	GT:AD:DP:GQ:PL	1/1:0,120:120:99:5109,361,0
1	1269888	rs139522421	C	A	1278.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=1.247;DB;DP=74;FS=5.047;MQ=60.00;MQRankSum=-0.484;QD=17.27;ReadPosRankSum=2.459;SOR=1.357	GT:AD:DP:GQ:PL	0/1:39,35:74:99:1309,0,1448
1	1272045	rs142868903	G	A	29.22	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=-1.037;DB;DP=10;FS=0.000;MQ=60.00;MQRankSum=0.382;QD=2.92;ReadPosRankSum=-1.255;SOR=0.336	GT:AD:DP:GQ:PL	0/1:8,2:10:60:60,0,274
1	1273116	rs307371	A	G	11107.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;FS=0.000;MQ=60.00;QD=30.10;SOR=1.027	GT:AD:DP:GQ:PL	1/1:0,71:71:99:3017,213,0
1	1273278	rs307370	A	G	7991.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.000;MQ=60.00;QD=29.76;SOR=0.868	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2669,193,0
1	1275264	rs59153307	A	ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG	2602.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=-0.681;DB;DP=19;FS=55.927;MQ=60.07;MQRankSum=0.016;QD=17.12;ReadPosRankSum=-0.206;SOR=6.271	GT:AD:DP:GQ:PL	0/1:4,15:19:1:881,0,1
1	1276973	rs145370195	G	GACAC	14449.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;FS=0.000;MQ=60.21;QD=31.26;SOR=1.905	GT:AD:DP:GQ:PL	1/1:0,102:102:99:4792,324,0
1	1277533	rs307362	T	C	8680.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.000;MQ=60.00;QD=26.21;SOR=1.755	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2473,174,0
1	1278237	rs307361	T	C	7493.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.000;MQ=60.00;QD=28.83;SOR=5.844	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2383,166,0
1	1284490	rs150789461	G	A	4393.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MQ=60.00;QD=27.65;SOR=9.289	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1234,87,0
1	1287922	rs3766185	G	A	285.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=29.11;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
1	1288471	rs3766183	C	T	7267.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.236;ClippingRankSum=-1.024;DB;DP=48;FS=0.000;MQ=60.00;MQRankSum=0.669;QD=34.85;ReadPosRankSum=0.394;SOR=3.552	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1908,99,0
1	1288583	rs3845295	C	G	10929.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.000;MQ=60.00;QD=35.16;SOR=2.815	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3213,231,0
1	1288823	rs2296471	A	G	9485.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.000;MQ=60.00;QD=29.10;SOR=2.313	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3132,222,0
1	1289367	rs140777846	CTG	C	15627.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;FS=0.000;MQ=60.40;QD=31.22;SOR=1.900	GT:AD:DP:GQ:PL	1/1:0,114:114:99:5109,343,0
1	1289911	rs4970365	G	A	11939.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.096;ClippingRankSum=-1.660;DB;DP=93;FS=0.000;MQ=60.00;MQRankSum=-0.824;QD=31.52;ReadPosRankSum=-0.824;SOR=0.965	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3882,279,0
1	1290276	rs75904949	C	G	3840.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;ClippingRankSum=-0.641;DB;DP=86;FS=7.572;MQ=60.00;MQRankSum=-2.180;QD=20.65;ReadPosRankSum=0.988;SOR=1.139	GT:AD:DP:GQ:PL	0/1:36,50:86:99:1930,0,1258
1	1291159	rs201260508	GA	G	695.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MQ=61.78;QD=28.96;SOR=2.531	GT:AD:DP:GQ:PL	1/1:0,8:8:24:294,24,0
1	1293764	rs34841888	G	C	6218.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MQ=60.00;QD=30.49;SOR=2.772	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2290,162,0
1	1296691	rs2765025	C	G	10221.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.000;MQ=60.00;QD=34.29;SOR=3.545	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3208,223,0
1	1308982	rs2765015	A	G	1166.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MQ=59.53;QD=25.27;SOR=6.736	GT:AD:DP:GQ:PL	1/1:0,7:7:21:293,21,0
1	1310074	rs2765035	C	G	8995.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.000;MQ=60.00;QD=24.47;SOR=1.168	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2654,191,0
1	1310668	rs2242398	A	C	104.55	PASS	AC=0;AF=0.00;AN=0;DB;DP=3;FS=0.000;MQ=60.00;QD=34.85;SOR=2.833	GT	./.
1	1320933	rs9661288	G	A	658.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MQ=48.14;QD=34.29;SOR=1.493	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
1	1321299	rs70949585	A	AG	119.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=23.88;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
1	1323078	rs12729599	A	G	9154.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;ClippingRankSum=1.479;DB;DP=71;FS=4.214;MQ=60.00;MQRankSum=-0.356;QD=29.85;ReadPosRankSum=0.261;SOR=1.090	GT:AD:DP:GQ:PL	1/1:1,70:71:99:2846,203,0
1	1323143	rs141100746	CCT	C	11252.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MQ=60.38;QD=26.52;SOR=1.091	GT:AD:DP:GQ:PL	1/1:0,69:69:99:3089,208,0
1	1323945	.	GTC	G	2484.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=-0.766;DP=19;FS=2.065;MQ=61.27;MQRankSum=1.285;QD=18.68;ReadPosRankSum=0.318;SOR=0.284	GT:AD:DP:GQ:PL	0/1:2,17:19:17:546,0,17
1	1323963	rs113604022	C	A	244.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.112;ClippingRankSum=-0.245;DB;DP=26;FS=5.306;MQ=61.19;MQRankSum=1.023;QD=7.40;ReadPosRankSum=1.045;SOR=1.297	GT:AD:DP:GQ:PL	0/1:16,10:26:99:284,0,464
1	1324152	.	GA	G	23.26	INDEL_LowQualityDepth;LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=-0.387;DP=6;FS=0.000;MQ=60.00;MQRankSum=1.186;QD=0.70;ReadPosRankSum=1.568;SOR=0.859	GT:AD:DP:GQ:PL	0/1:3,3:6:41:41,0,42
1	1325493	.	CA	C	276.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=-0.079;DP=15;FS=2.116;MQ=60.16;MQRankSum=-0.174;QD=4.13;ReadPosRankSum=1.819;SOR=0.334	GT:AD:DP:GQ:PL	0/1:6,9:15:89:91,0,89
1	1342612	rs2275915	G	C	3317.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.659;ClippingRankSum=0.705;DB;DP=98;FS=7.008;MQ=60.00;MQRankSum=-0.572;QD=16.18;ReadPosRankSum=-1.360;SOR=1.543	GT:AD:DP:GQ:PL	0/0:98,0:98:99:0,294,4193
1	1361633	rs12022947	G	A	493.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.597;DB;DP=18;FS=4.921;MQ=60.00;MQRankSum=-0.672;QD=27.40;ReadPosRankSum=0.189;SOR=1.510	GT:AD:DP:GQ:PL	0/1:6,12:18:99:524,0,430
1	1361641	rs12030806	C	T	484.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.028;DB;DP=19;FS=10.016;MQ=60.00;MQRankSum=-0.270;QD=25.48;ReadPosRankSum=0.455;SOR=2.316	GT:AD:DP:GQ:PL	0/1:6,13:19:99:515,0,430
1	1362834	rs112393080	C	G	135.11	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=1;FS=0.000;MQ=57.19;MQRankSum=0.720;QD=27.02;ReadPosRankSum=0.720;SOR=0.368	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,113
1	1362848	rs12116538	A	T	135.11	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.358;ClippingRankSum=1.231;DB;DP=1;FS=0.000;MQ=57.19;MQRankSum=-1.231;QD=33.78;ReadPosRankSum=-1.231;SOR=0.223	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,113
1	1362854	rs144894317	C	T	91.36	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.937;ClippingRankSum=-1.300;DB;DP=1;FS=0.000;MQ=57.76;MQRankSum=1.300;QD=18.27;ReadPosRankSum=0.000;SOR=1.179	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,113
1	1374834	rs1892289	A	G	695.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.208;DB;DP=33;FS=3.336;MQ=60.00;MQRankSum=0.841;QD=21.06;ReadPosRankSum=0.352;SOR=0.273	GT:AD:DP:GQ:PL	0/1:14,19:33:99:726,0,514
1	1386016	rs34301361	A	G	4063.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.620;DB;DP=224;FS=1.606;MQ=53.20;MQRankSum=0.934;QD=18.06;ReadPosRankSum=3.493;SOR=0.522	GT:AD:DP:GQ:PL	0/1:110,114:224:99:4094,0,3906
1	1387348	rs1781143	C	T	5284.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.476;DB;DP=278;FS=0.000;MQ=57.21;MQRankSum=2.820;QD=18.80;ReadPosRankSum=1.752;SOR=0.579	GT:AD:DP:GQ:PL	0/1:137,141:278:99:5315,0,5091
1	1387667	rs1781144	C	G	45047.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=324;FS=0.000;MQ=60.00;QD=24.52;SOR=1.574	GT:AD:DP:GQ:PL	1/1:0,324:324:99:13665,973,0
1	1387726	rs9793066	A	G	3276.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.539;ClippingRankSum=1.598;DB;DP=224;FS=1.033;MQ=59.50;MQRankSum=2.335;QD=14.56;ReadPosRankSum=-0.550;SOR=0.748	GT:AD:DP:GQ:PL	0/1:132,92:224:99:3307,0,5018
1	1387764	rs9793256	G	A	2316.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.224;ClippingRankSum=0.593;DB;DP=168;FS=1.275;MQ=56.94;MQRankSum=4.365;QD=13.70;ReadPosRankSum=0.423;SOR=0.972	GT:AD:DP:GQ:PL	0/1:99,69:168:99:2347,0,3667
1	1387891	rs1624483	A	G	941.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;ClippingRankSum=-0.281;DB;DP=80;FS=0.000;MQ=58.69;MQRankSum=-2.646;QD=11.76;ReadPosRankSum=0.544;SOR=0.518	GT:AD:DP:GQ:PL	0/1:52,28:80:99:972,0,2027
1	1389695	rs35096659	C	T	549.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=-0.725;DB;DP=33;FS=11.385;MQ=39.06;MQRankSum=0.224;QD=16.64;ReadPosRankSum=1.960;SOR=0.116	GT:AD:DP:GQ:PL	0/1:17,16:33:99:580,0,590
1	1390717	rs1695866	A	G	2307.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=-1.156;DB;DP=124;FS=0.999;MQ=60.00;MQRankSum=0.451;QD=18.46;ReadPosRankSum=0.071;SOR=0.495	GT:AD:DP:GQ:PL	0/1:60,64:124:99:2338,0,2191
1	1390875	rs1781147	C	T	3202.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;ClippingRankSum=0.210;DB;DP=176;FS=0.000;MQ=44.33;MQRankSum=-1.876;QD=18.19;ReadPosRankSum=1.483;SOR=0.686	GT:AD:DP:GQ:PL	0/1:89,87:176:99:3233,0,3262
1	1390997	rs1781148	T	G	3048.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;ClippingRankSum=2.095;DB;DP=173;FS=4.846;MQ=59.64;MQRankSum=-3.487;QD=17.52;ReadPosRankSum=0.292;SOR=1.169	GT:AD:DP:GQ:PL	0/1:90,83:173:99:3079,0,3320
1	1391304	rs1695873	T	C	1538.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.970;ClippingRankSum=0.314;DB;DP=118;FS=8.324;MQ=56.22;MQRankSum=-7.635;QD=13.04;ReadPosRankSum=-0.581;SOR=1.759	GT:AD:DP:GQ:PL	0/1:72,46:118:99:1569,0,2729
1	1391431	rs12090088	C	T	1253.13	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=-0.865;DB;DP=85;FS=97.140;MQ=38.02;MQRankSum=2.847;QD=14.74;ReadPosRankSum=2.594;SOR=5.783	GT:AD:DP:GQ:PL	0/1:49,36:85:99:1284,0,1809
1	1391459	.	T	C	840.13	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=-0.155;DP=64;FS=75.559;MQ=37.19;MQRankSum=2.937;QD=13.13;ReadPosRankSum=0.145;SOR=5.054	GT:AD:DP:GQ:PL	0/1:39,25:64:99:871,0,1392
1	1391534	rs78377693	G	A	612.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.901;DB;DP=82;FS=17.469;MQ=45.89;MQRankSum=-4.375;QD=7.47;ReadPosRankSum=3.874;SOR=1.633	GT:AD:DP:GQ:PL	0/1:59,23:82:99:643,0,2073
1	1391562	rs79835757	G	A	659.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.780;ClippingRankSum=1.051;DB;DP=113;FS=12.443;MQ=44.81;MQRankSum=-5.028;QD=5.83;ReadPosRankSum=-2.187;SOR=2.046	GT:AD:DP:GQ:PL	0/1:87,26:113:99:690,0,3201
1	1391597	rs71628970	T	C	119.13	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=2.203;ClippingRankSum=-0.079;DB;DP=102;FS=8.318;MQ=43.85;MQRankSum=-2.671;QD=1.17;ReadPosRankSum=1.229;SOR=4.296	GT:AD:DP:GQ:PL	0/1:91,11:102:99:150,0,3432
1	1392413	rs35334427	A	C	882.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.033;ClippingRankSum=0.919;DB;DP=45;FS=0.000;MQ=60.00;MQRankSum=-0.979;QD=19.60;ReadPosRankSum=0.472;SOR=0.226	GT:AD:DP:GQ:PL	0/1:20,25:45:99:913,0,702
1	1392451	rs1781149	C	T	1269.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=-0.365;DB;DP=63;FS=2.519;MQ=60.00;MQRankSum=0.369;QD=20.14;ReadPosRankSum=1.605;SOR=0.368	GT:AD:DP:GQ:PL	0/1:29,34:63:99:1300,0,1029
1	1395449	.	AT	A	120.73	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;ClippingRankSum=-1.378;DP=14;FS=2.706;MQ=60.26;MQRankSum=0.582;QD=1.08;ReadPosRankSum=0.337;SOR=1.445	GT:AD:DP:GQ:PL	0/1:8,6:14:68:68,0,108
1	1407372	rs188574574	T	C	893.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=-1.068;DB;DP=47;FS=0.000;MQ=43.98;MQRankSum=-7.242;QD=19.00;ReadPosRankSum=0.679;SOR=0.608	GT:AD:DP:GQ:PL	0/1:22,25:47:99:924,0,821
1	1417696	rs819970	C	G	5460.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=1.494;DB;DP=126;FS=1.318;MQ=44.61;MQRankSum=-14.106;QD=14.80;ReadPosRankSum=-2.376;SOR=0.602	GT:AD:DP:GQ:PL	0/1:63,63:126:99:1982,0,2301
1	1418531	rs819973	G	A	3241.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=59.95;QD=28.97;SOR=5.994	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1181,90,0
1	1420637	rs35871802	C	T	1983.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.943;ClippingRankSum=1.195;DB;DP=37;FS=17.961;MQ=48.93;MQRankSum=-1.573;QD=19.07;ReadPosRankSum=1.120;SOR=0.136	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1595
1	1423281	rs79849353	G	A	3832.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.116;ClippingRankSum=-0.136;DB;DP=100;FS=0.441;MQ=59.85;MQRankSum=-0.961;QD=18.16;ReadPosRankSum=2.288;SOR=0.652	GT:AD:DP:GQ:PL	0/0:100,0:100:99:0,301,4349
1	1458073	rs3118507	A	G	2159.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=-0.115;DB;DP=39;FS=2.677;MQ=49.56;MQRankSum=-6.992;QD=13.93;ReadPosRankSum=1.596;SOR=0.443	GT:AD:DP:GQ:PL	0/1:23,16:39:99:492,0,870
1	1460793	.	CT	C	57.73	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0.066;DP=14;FS=1.938;MQ=60.00;MQRankSum=-0.330;QD=0.42;ReadPosRankSum=-0.550;SOR=1.151	GT:AD:DP:GQ:PL	0/1:10,4:14:35:35,0,153
1	1463338	.	CT	C	28.69	INDEL_LowQualityDepth;LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=-0.251;DP=6;FS=0.000;MQ=60.00;MQRankSum=1.357;QD=0.74;ReadPosRankSum=0.754;SOR=0.061	GT:AD:DP:GQ:PL	0/1:2,4:6:26:49,0,26
1	1469546	rs3128344	G	A	11039.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.737;ClippingRankSum=-0.499;DB;DP=87;FS=16.175;MQ=48.76;MQRankSum=-8.064;QD=34.07;ReadPosRankSum=-1.171;SOR=1.710	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3592,260,0
1	1469596	.	TGC	T	1289.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=-0.466;DP=104;FS=0.000;MQ=49.31;MQRankSum=-9.563;QD=12.16;ReadPosRankSum=-1.546;SOR=0.516	GT:AD:DP:GQ:PL	0/1:68,36:104:99:1329,0,2780
1	1469600	.	G	GCA	1403.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.654;DP=105;FS=2.091;MQ=49.32;MQRankSum=-9.618;QD=13.36;ReadPosRankSum=-1.199;SOR=0.464	GT:AD:DP:GQ:PL	0/1:68,37:105:99:1443,0,2926
1	1469606	rs35611435	C	T	1419.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=-0.421;DB;DP=106;FS=3.768;MQ=48.76;MQRankSum=-9.582;QD=13.39;ReadPosRankSum=-0.133;SOR=0.540	GT:AD:DP:GQ:PL	0/1:69,37:106:99:1450,0,2876
1	1470807	rs146206869	C	T	2842.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.535;ClippingRankSum=-0.350;DB;DP=140;FS=0.000;MQ=60.00;MQRankSum=0.212;QD=20.16;ReadPosRankSum=2.179;SOR=0.680	GT:AD:DP:GQ:PL	0/1:63,77:140:99:2873,0,2307
1	1477244	rs7290	T	C	2004.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;ClippingRankSum=-0.166;DB;DP=99;FS=3.793;MQ=60.00;MQRankSum=-0.274;QD=20.24;ReadPosRankSum=2.589;SOR=0.312	GT:AD:DP:GQ:PL	0/1:46,53:99:99:2035,0,1592
1	1479333	rs7533	A	G	1139.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=-2.578;DB;DP=67;FS=3.479;MQ=59.99;MQRankSum=-0.545;QD=16.75;ReadPosRankSum=0.918;SOR=1.028	GT:AD:DP:GQ:PL	0/1:35,32:67:99:1170,0,1293
1	1509825	rs6666293	A	G	3072.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=-0.556;DB;DP=46;FS=5.841;MQ=60.00;MQRankSum=-0.991;QD=19.45;ReadPosRankSum=1.179;SOR=0.395	GT:AD:DP:GQ:PL	0/1:21,25:46:99:936,0,760
1	1510035	rs150737039	GGC	G	1920.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.388;DB;DP=31;FS=1.681;MQ=60.00;MQRankSum=-0.048;QD=17.62;ReadPosRankSum=2.023;SOR=1.300	GT:AD:DP:GQ:PL	0/1:18,13:31:99:486,0,739
1	1510801	rs7519837	C	T	2243.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=-1.450;DB;DP=42;FS=3.038;MQ=60.00;MQRankSum=-0.152;QD=17.53;ReadPosRankSum=1.933;SOR=2.218	GT:AD:DP:GQ:PL	0/1:22,20:42:99:759,0,822
1	1534614	rs11552172	T	C	1771.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.940;DB;DP=34;FS=4.082;MQ=60.00;MQRankSum=0.120;QD=19.46;ReadPosRankSum=0.647;SOR=0.095	GT:AD:DP:GQ:PL	0/1:18,16:34:99:561,0,677
1	1551927	rs7418389	T	C	10559.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;FS=0.000;MQ=60.00;QD=32.58;SOR=2.920	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3575,249,0
1	1558792	rs12755088	T	C	4256.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.000;MQ=60.00;QD=30.29;SOR=3.824	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1195,81,0
1	1559971	rs12748433	C	T	9020.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.000;MQ=60.00;QD=30.37;SOR=7.931	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3242,226,0
1	1560100	rs28441650	G	A	7505.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0.144;DB;DP=116;FS=0.970;MQ=60.00;MQRankSum=-0.076;QD=19.20;ReadPosRankSum=0.917;SOR=0.611	GT:AD:DP:GQ:PL	0/1:52,64:116:99:2294,0,1897
1	1561907	rs200908623	TCGGGGC	T	450.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.624;ClippingRankSum=-0.847;DB;DP=32;FS=0.000;MQ=60.10;MQRankSum=0.198;QD=15.00;ReadPosRankSum=-0.323;SOR=0.096	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,2314
1	1562895	rs12735861	C	T	2949.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=-1.554;DB;DP=61;FS=6.602;MQ=58.59;MQRankSum=-0.541;QD=15.61;ReadPosRankSum=-0.377;SOR=1.143	GT:AD:DP:GQ:PL	0/1:36,25:61:99:807,0,1299
1	1563789	rs74892851	C	A	5096.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=1.986;DB;DP=99;FS=13.024;MQ=60.00;MQRankSum=-2.188;QD=17.88;ReadPosRankSum=0.915;SOR=0.317	GT:AD:DP:GQ:PL	0/1:56,43:99:99:1499,0,2156
1	1564064	rs201947158	G	A	243.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.095;ClippingRankSum=-0.413;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=0.203;QD=10.13;ReadPosRankSum=0.904;SOR=0.011	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,1196
1	1564194	rs3935032	C	T	1212.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=-0.641;DB;DP=22;FS=6.969;MQ=60.00;MQRankSum=-1.772;QD=19.25;ReadPosRankSum=0.448;SOR=0.180	GT:AD:DP:GQ:PL	0/1:12,10:22:99:366,0,451
1	1564712	rs61774907	G	T	1877.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=-1.836;DB;DP=30;FS=2.419;MQ=60.00;MQRankSum=0.762;QD=16.47;ReadPosRankSum=1.687;SOR=0.906	GT:AD:DP:GQ:PL	0/1:17,13:30:99:467,0,576
1	1564952	rs112177324	TG	T	1491.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=-0.353;DB;DP=40;FS=1.417;MQ=60.39;MQRankSum=0.072;QD=10.89;ReadPosRankSum=-0.590;SOR=0.554	GT:AD:DP:GQ:PL	0/1:17,23:40:99:606,0,415
1	1566068	rs28730454	A	G	3718.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.290;ClippingRankSum=-0.177;DB;DP=55;FS=0.000;MQ=60.00;MQRankSum=-0.011;QD=21.62;ReadPosRankSum=0.139;SOR=3.726	GT:AD:DP:GQ:PL	1/1:3,52:55:79:1422,79,0
1	1569784	.	C	CCGG	74.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.188;ClippingRankSum=-0.085;DP=136;FS=18.232;MQ=39.18;MQRankSum=-2.478;QD=9.26;ReadPosRankSum=-2.844;SOR=3.599	GT:AD:DP:GQ:PL	0/0:134,2:136:99:0,359,7804
1	1570039	rs141033500	G	C	265.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.006;ClippingRankSum=1.021;DB;DP=149;FS=54.066;MQ=33.08;MQRankSum=-2.068;QD=1.77;ReadPosRankSum=-2.692;SOR=2.401	GT:AD:DP:GQ:PL	0/0:144,5:149:99:0,301,4832
1	1571640	.	G	T	8176.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.295;DP=66;FS=0.000;MQ=39.23;MQRankSum=-0.251;QD=26.40;ReadPosRankSum=0.361;SOR=3.442	GT:AD:DP:GQ:PL	0/1:34,32:66:99:1177,0,1225
1	1572939	rs28688376	T	C	2827.13	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=-0.770;DB;DP=175;FS=0.937;MQ=53.64;MQRankSum=-13.426;QD=16.16;ReadPosRankSum=4.549;SOR=0.778	GT:AD:DP:GQ:PL	0/1:91,84:175:99:2858,0,3258
1	1574019	rs9442412	A	G	3141.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.770;DB;DP=101;FS=3.299;MQ=42.38;MQRankSum=4.104;QD=10.69;ReadPosRankSum=-0.378;SOR=1.193	GT:AD:DP:GQ:PL	0/1:68,33:101:99:1031,0,2347
1	1574076	rs9442413	G	A	3285.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;ClippingRankSum=1.531;DB;DP=108;FS=0.000;MQ=43.97;MQRankSum=3.445;QD=10.30;ReadPosRankSum=2.231;SOR=0.460	GT:AD:DP:GQ:PL	0/1:67,41:108:99:1351,0,2319
1	1575616	rs80012316	T	C	6356.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.000;MQ=31.64;QD=34.18;SOR=5.983	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2008,180,0
1	1575836	rs72468213	C	G	1100.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=5.261;ClippingRankSum=-0.150;DB;DP=159;FS=5.374;MQ=33.63;MQRankSum=-8.391;QD=2.15;ReadPosRankSum=4.805;SOR=0.310	GT:AD:DP:GQ:PL	0/1:124,35:159:99:615,0,3972
1	1576264	.	C	T	388.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.573;DP=18;FS=0.000;MQ=33.03;MQRankSum=-1.137;QD=19.41;ReadPosRankSum=0.965;SOR=0.576	GT:AD:DP:GQ:PL	0/0:18,0:18:54:0,54,603
1	1577003	rs142548808	C	T	2902.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=1.545;DB;DP=39;FS=0.000;MQ=36.47;MQRankSum=1.106;QD=19.10;ReadPosRankSum=-0.069;SOR=0.988	GT:AD:DP:GQ:PL	0/1:21,18:39:99:586,0,730
1	1577084	rs200429680	TTCCTCCTCC	T	710.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=-2.183;DB;DP=10;FS=7.533;MQ=35.72;MQRankSum=0.050;QD=15.80;ReadPosRankSum=0.817;SOR=3.056	GT:AD:DP:GQ:PL	0/1:3,7:10:99:240,0,105
1	1577180	rs150540375	C	T	368.98	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=-0.691;DB;DP=5;FS=0.000;MQ=30.50;MQRankSum=-0.322;QD=13.18;ReadPosRankSum=-0.218;SOR=0.566	GT:AD:DP:GQ:PL	0/1:1,4:5:17:125,0,17
1	1580282	.	A	G	36.27	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.239;ClippingRankSum=-0.197;DP=30;FS=0.000;MQ=38.96;MQRankSum=-1.283;QD=0.84;ReadPosRankSum=-4.037;SOR=0.223	GT:AD:DP:GQ:PL	0/0:29,1:30:53:0,53,916
1	1580738	rs149767621	T	A	15043.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=-0.676;DB;DP=361;FS=2.124;MQ=28.91;MQRankSum=-1.197;QD=12.79;ReadPosRankSum=1.472;SOR=1.153	GT:AD:DP:GQ:PL	0/1:180,181:361:99:4723,0,4836
1	1581065	rs201226565	G	C	77.36	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=1.764;DB;DP=14;FS=0.000;MQ=30.24;MQRankSum=-1.932;QD=2.76;ReadPosRankSum=-1.316;SOR=0.484	GT:AD:DP:GQ:PL	0/1:11,3:14:54:54,0,299
1	1581096	rs145723946	C	T	390.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=2.468;DB;DP=14;FS=3.067;MQ=33.81;MQRankSum=-0.486;QD=11.85;ReadPosRankSum=-0.666;SOR=0.738	GT:AD:DP:GQ:PL	0/1:9,5:14:99:117,0,279
1	1581558	rs117719933	C	T	6712.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=35.94;QD=24.06;SOR=2.130	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1738,138,0
1	1581586	rs61774914	T	C	6759.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MQ=35.61;QD=32.81;SOR=1.231	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2019,162,0
1	1581604	rs199669493	G	A	1463.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=-1.666;DB;DP=79;FS=5.288;MQ=36.56;MQRankSum=-0.770;QD=6.07;ReadPosRankSum=1.359;SOR=1.065	GT:AD:DP:GQ:PL	0/1:60,19:79:99:455,0,2085
1	1581713	rs76922129	A	C,G	9906.13	PASS	AC=1,0;AF=0.500,0.00;AN=2;BaseQRankSum=0.692;ClippingRankSum=-0.831;DB;DP=113;FS=17.396;MQ=41.60;MQRankSum=-9.037;QD=29.14;ReadPosRankSum=1.780;SOR=1.804	GT:AD:DP:GQ:PL	0/1:42,49,22:113:99:1679,0,1495,1086,919,2669
1	1581759	rs61774915	G	A	708.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;ClippingRankSum=0.145;DB;DP=95;FS=11.668;MQ=44.66;MQRankSum=-8.473;QD=2.27;ReadPosRankSum=-1.852;SOR=0.242	GT:AD:DP:GQ:PL	0/1:85,10:95:2:2,0,3208
1	1581881	rs61774916	T	C	2750.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;ClippingRankSum=1.757;DB;DP=170;FS=0.658;MQ=52.21;MQRankSum=-3.882;QD=4.96;ReadPosRankSum=1.554;SOR=0.604	GT:AD:DP:GQ:PL	0/1:139,31:170:99:655,0,5197
1	1581926	rs61774917	G	T	2652.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;ClippingRankSum=-0.186;DB;DP=143;FS=5.924;MQ=46.75;MQRankSum=-11.770;QD=6.07;ReadPosRankSum=-4.153;SOR=0.735	GT:AD:DP:GQ:PL	0/1:102,41:143:99:936,0,3768
1	1581958	rs200481124	T	C	711.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=-1.608;DB;DP=137;FS=17.101;MQ=41.02;MQRankSum=-7.792;QD=2.32;ReadPosRankSum=0.455;SOR=2.133	GT:AD:DP:GQ:PL	0/1:117,20:137:99:261,0,4153
1	1582106	rs79942991	T	C	19221.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=182;FS=0.000;MQ=35.42;QD=34.49;SOR=1.100	GT:AD:DP:GQ:PL	1/1:0,182:182:99:6739,546,0
1	1582202	rs61774918	C	T	9575.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=1.623;DB;DP=199;FS=0.000;MQ=41.53;MQRankSum=-1.229;QD=13.98;ReadPosRankSum=0.162;SOR=0.701	GT:AD:DP:GQ:PL	0/1:107,92:199:99:2839,0,3423
1	1582455	rs146214448	G	A	5461.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.006;ClippingRankSum=1.670;DB;DP=193;FS=51.785;MQ=32.79;MQRankSum=-5.101;QD=9.03;ReadPosRankSum=2.621;SOR=2.381	GT:AD:DP:GQ:PL	0/1:121,72:193:99:1954,0,3851
1	1582616	rs74047815	T	C	578.92	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=-0.247;DB;DP=107;FS=35.629;MQ=55.63;MQRankSum=-10.188;QD=1.60;ReadPosRankSum=-4.112;SOR=0.076	GT:AD:DP:GQ:PL	0/1:93,14:107:99:204,0,6008
1	1582794	rs4648754	C	A	13338.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;FS=0.000;MQ=46.18;QD=30.79;SOR=2.171	GT:AD:DP:GQ:PL	1/1:0,111:111:99:4477,334,0
1	1582841	rs61774920	A	G	2689.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.287;DB;DP=84;FS=0.688;MQ=34.68;MQRankSum=-3.716;QD=9.61;ReadPosRankSum=1.558;SOR=0.769	GT:AD:DP:GQ:PL	0/1:65,19:84:99:602,0,2640
1	1582844	rs61774921	G	T	2680.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.618;ClippingRankSum=0.371;DB;DP=84;FS=0.712;MQ=34.60;MQRankSum=-4.403;QD=9.51;ReadPosRankSum=1.339;SOR=0.762	GT:AD:DP:GQ:PL	0/1:65,19:84:99:593,0,2731
1	1582880	rs61774922	G	C	1468.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=-1.144;DB;DP=82;FS=15.837;MQ=33.19;MQRankSum=-3.521;QD=4.68;ReadPosRankSum=-0.422;SOR=0.227	GT:AD:DP:GQ:PL	0/1:65,17:82:99:323,0,2161
1	1582961	rs61774949	G	C	9855.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.137;ClippingRankSum=0.914;DB;DP=161;FS=55.917;MQ=38.55;MQRankSum=0.521;QD=18.67;ReadPosRankSum=-1.155;SOR=0.511	GT:AD:DP:GQ:PL	0/1:113,48:161:99:1421,0,3982
1	1583003	rs72468214	C	T	5871.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=-2.734;DB;DP=150;FS=38.466;MQ=39.51;MQRankSum=-4.037;QD=11.38;ReadPosRankSum=1.030;SOR=2.716	GT:AD:DP:GQ:PL	0/1:85,65:150:99:2051,0,2989
1	1583197	rs61774950	T	G	240.92	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=3.874;ClippingRankSum=0.469;DB;DP=63;FS=0.846;MQ=44.38;MQRankSum=-6.965;QD=1.19;ReadPosRankSum=4.020;SOR=0.780	GT:AD:DP:GQ:PL	0/1:54,9:63:95:95,0,1993
1	1583220	rs61774951	G	A	194.04	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.249;DB;DP=65;FS=5.431;MQ=42.85;MQRankSum=-6.216;QD=0.95;ReadPosRankSum=5.071;SOR=1.264	GT:AD:DP:GQ:PL	0/1:56,9:65:90:90,0,1941
1	1583495	rs61774952	T	C	1022.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.250;DB;DP=94;FS=13.001;MQ=46.40;MQRankSum=-11.224;QD=3.01;ReadPosRankSum=-4.392;SOR=1.214	GT:AD:DP:GQ:PL	0/1:76,18:94:99:285,0,2982
1	1583669	rs70937163	C	CT	5453.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=38.56;QD=30.71;SOR=8.439	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1248,93,0
1	1583687	.	T	C	15.26	LowQual;SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=-0.254;DP=31;FS=0.000;MQ=39.58;MQRankSum=-4.421;QD=0.49;ReadPosRankSum=-2.705;SOR=0.055	GT:AD:DP:GQ:PL	0/1:27,4:31:46:46,0,1030
1	1585597	rs7531938	A	G	10850.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=-1.247;DB;DP=80;FS=1.412;MQ=60.00;MQRankSum=0.090;QD=31.42;ReadPosRankSum=1.133;SOR=0.580	GT:AD:DP:GQ:PL	0/1:39,41:80:99:1502,0,1435
1	1585642	rs3936009	G	T	11821.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=-0.941;DB;DP=94;FS=5.904;MQ=60.00;MQRankSum=-0.662;QD=26.33;ReadPosRankSum=2.930;SOR=0.469	GT:AD:DP:GQ:PL	0/1:44,50:94:99:1828,0,1585
1	1586752	rs11486023	T	C	8162.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.000;MQ=59.65;QD=25.75;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2473,172,0
1	1588670	rs61774958	G	A	9845.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.163;ClippingRankSum=-0.337;DB;DP=159;FS=3.251;MQ=57.99;MQRankSum=-3.531;QD=16.22;ReadPosRankSum=-0.380;SOR=1.186	GT:AD:DP:GQ:PL	0/1:79,80:159:99:2925,0,2915
1	1588717	rs61774959	G	A	8337.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.172;ClippingRankSum=-0.820;DB;DP=142;FS=10.888;MQ=54.38;MQRankSum=1.371;QD=14.45;ReadPosRankSum=2.184;SOR=1.436	GT:AD:DP:GQ:PL	0/1:83,59:142:99:2218,0,3495
1	1588737	rs61776760	C	T	7113.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.221;ClippingRankSum=-0.962;DB;DP=145;FS=12.802;MQ=50.84;MQRankSum=3.511;QD=12.44;ReadPosRankSum=2.142;SOR=1.564	GT:AD:DP:GQ:PL	0/1:94,51:145:99:1870,0,4084
1	1588743	rs61776761	A	T	6685.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;ClippingRankSum=-0.099;DB;DP=148;FS=14.285;MQ=49.64;MQRankSum=3.079;QD=11.81;ReadPosRankSum=1.325;SOR=1.615	GT:AD:DP:GQ:PL	0/1:102,46:148:99:1654,0,4310
1	1588744	rs79724854	AGCG	A	6485.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=1.713;DB;DP=150;FS=14.270;MQ=49.30;MQRankSum=3.416;QD=11.05;ReadPosRankSum=0.842;SOR=1.601	GT:AD:DP:GQ:PL	0/1:105,45:150:99:1613,0,4300
1	1588808	.	T	TA	1334.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=-1.462;DP=143;FS=63.646;MQ=41.72;MQRankSum=-1.636;QD=2.57;ReadPosRankSum=-2.839;SOR=8.127	GT:AD:DP:GQ:PL	0/1:118,25:143:99:351,0,3259
1	1589057	rs199872570	TAAG	T	577.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=-1.407;DB;DP=36;FS=0.000;MQ=37.82;MQRankSum=3.689;QD=5.78;ReadPosRankSum=0.446;SOR=0.077	GT:AD:DP:GQ:PL	0/1:30,6:36:99:158,0,1476
1	1590291	rs111946117	C	G	87.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=-1.234;DB;DP=8;FS=0.000;MQ=42.82;MQRankSum=2.426;QD=10.90;ReadPosRankSum=-0.553;SOR=0.067	GT:AD:DP:GQ:PL	0/1:4,4:8:99:118,0,125
1	1590327	rs7547516	A	G	1073.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=-0.415;DB;DP=10;FS=0.000;MQ=55.37;MQRankSum=0.259;QD=33.54;ReadPosRankSum=-1.246;SOR=0.456	GT:AD:DP:GQ:PL	0/1:5,5:10:99:178,0,175
1	1590521	rs79113395	G	A	75.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.106;DB;DP=5;FS=0.000;MQ=59.12;MQRankSum=1.799;QD=15.03;ReadPosRankSum=0.529;SOR=0.048	GT:AD:DP:GQ:PL	0/1:2,3:5:74:106,0,74
1	1590526	rs9329573	G	C	861.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MQ=59.07;QD=28.34;SOR=6.184	GT:AD:DP:GQ:PL	1/1:0,6:6:18:229,18,0
1	1590575	rs9661285	G	A	603.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.350;DB;DP=8;FS=0.000;MQ=58.97;MQRankSum=0.650;QD=31.76;ReadPosRankSum=-0.550;SOR=2.419	GT:AD:DP:GQ:PL	0/1:4,4:8:99:153,0,145
1	1591401	rs200965692	A	C	367.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.051;DB;DP=48;FS=0.000;MQ=29.85;MQRankSum=-1.331;QD=7.65;ReadPosRankSum=-0.030;SOR=0.092	GT:AD:DP:GQ:PL	0/1:31,17:48:99:398,0,890
1	1591732	.	T	C	631.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=-0.684;DP=38;FS=0.000;MQ=28.58;MQRankSum=-0.585;QD=4.98;ReadPosRankSum=3.114;SOR=0.421	GT:AD:DP:GQ:PL	0/1:31,7:38:99:109,0,858
1	1595867	rs4443835	C	A	3915.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.000;MQ=34.07;QD=34.05;SOR=0.728	GT:AD:DP:GQ:PL	1/1:0,26:26:77:879,77,0
1	1596196	rs1109644	C	T	1582.04	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=1.092;ClippingRankSum=-0.728;DB;DP=15;FS=0.000;MQ=27.38;MQRankSum=-0.073;QD=28.25;ReadPosRankSum=0.655;SOR=3.804	GT:AD:DP:GQ:PL	1/1:1,14:15:13:419,13,0
1	1596974	rs4074020	C	T	2237.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.000;MQ=60.00;QD=26.26;SOR=7.941	GT:AD:DP:GQ:PL	1/1:0,18:18:54:782,54,0
1	1597020	rs72634820	C	G	611.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=-0.527;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=0.489;QD=19.10;ReadPosRankSum=-0.147;SOR=0.741	GT:AD:DP:GQ:PL	0/1:15,17:32:99:642,0,556
1	1599812	rs12729295	C	T	3853.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.320;DB;DP=92;FS=2.392;MQ=36.52;MQRankSum=2.960;QD=11.79;ReadPosRankSum=3.006;SOR=0.858	GT:AD:DP:GQ:PL	0/1:59,33:92:99:1087,0,2028
1	1599888	rs2072923	A	G	11132.92	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=3.018;ClippingRankSum=-0.427;DB;DP=107;FS=94.150;MQ=38.13;MQRankSum=9.111;QD=28.33;ReadPosRankSum=-1.886;SOR=2.062	GT:AD:DP:GQ:PL	0/1:21,86:107:99:3070,0,359
1	1599940	rs61776767	C	T	53.13	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=3.456;ClippingRankSum=-0.008;DB;DP=93;FS=13.837;MQ=50.63;MQRankSum=-7.720;QD=0.34;ReadPosRankSum=0.075;SOR=1.935	GT:AD:DP:GQ:PL	0/0:90,3:93:99:0,190,3700
1	1599974	rs113499489	A	C	108.13	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.252;DB;DP=112;FS=4.319;MQ=55.54;MQRankSum=-9.430;QD=0.64;ReadPosRankSum=2.458;SOR=1.333	GT:AD:DP:GQ:PL	0/0:105,7:112:99:0,108,4311
1	1599981	rs72634822	C	T	6249.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=-1.520;DB;DP=106;FS=22.654;MQ=56.50;MQRankSum=2.717;QD=15.86;ReadPosRankSum=0.509;SOR=1.649	GT:AD:DP:GQ:PL	0/1:56,50:106:99:1784,0,2093
1	1601015	rs72634825	G	A	906.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=-0.895;DB;DP=11;FS=2.599;MQ=60.00;MQRankSum=0.601;QD=22.12;ReadPosRankSum=0.414;SOR=1.981	GT:AD:DP:GQ:PL	0/1:6,5:11:99:172,0,216
1	1601052	rs72634826	G	A	905.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=-0.990;DB;DP=12;FS=1.758;MQ=60.00;MQRankSum=0.390;QD=18.49;ReadPosRankSum=0.530;SOR=1.136	GT:AD:DP:GQ:PL	0/1:8,4:12:99:141,0,312
1	1602787	rs4639697	G	T	4773.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=60.00;QD=29.39;SOR=3.278	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1339,93,0
1	1608229	rs143080014	C	T	1784.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;ClippingRankSum=0.217;DB;DP=54;FS=0.000;MQ=26.93;MQRankSum=0.185;QD=11.30;ReadPosRankSum=0.288;SOR=0.877	GT:AD:DP:GQ:PL	0/1:27,27:54:99:682,0,659
1	1623725	rs151167524	C	A	100.36	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.720;DB;DP=1;FS=0.000;MQ=34.12;MQRankSum=-1.380;QD=20.07;ReadPosRankSum=0.720;SOR=1.329	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,45
1	1633003	.	C	CCG	385.12	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=2.804;ClippingRankSum=0.187;DP=51;FS=131.894;MQ=43.80;MQRankSum=-8.761;QD=1.71;ReadPosRankSum=-0.815;SOR=7.275	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,2396
1	1635004	rs874516	T	C	10520.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.687;ClippingRankSum=0.394;DB;DP=199;FS=1.143;MQ=55.35;MQRankSum=-8.849;QD=14.78;ReadPosRankSum=3.268;SOR=0.813	GT:AD:DP:GQ:PL	0/1:113,86:199:99:2856,0,4150
1	1635619	rs2076329	T	C	8275.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.889;DB;DP=155;FS=2.437;MQ=59.59;MQRankSum=-1.036;QD=16.32;ReadPosRankSum=2.127;SOR=0.861	GT:AD:DP:GQ:PL	0/1:79,76:155:99:2714,0,2965
1	1635749	rs55880629	C	A	6702.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0.306;DB;DP=137;FS=2.520;MQ=50.22;MQRankSum=-6.751;QD=13.79;ReadPosRankSum=-1.445;SOR=0.510	GT:AD:DP:GQ:PL	0/1:81,56:137:99:1856,0,2996
1	1636044	rs1059822	G	A	8776.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;ClippingRankSum=-0.871;DB;DP=209;FS=1.131;MQ=45.36;MQRankSum=-13.708;QD=11.93;ReadPosRankSum=1.265;SOR=0.785	GT:AD:DP:GQ:PL	0/1:116,93:209:99:3008,0,4304
1	1636274	rs2179381	C	T	7084.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=-0.669;DB;DP=187;FS=9.489;MQ=42.79;MQRankSum=-0.604;QD=13.70;ReadPosRankSum=0.473;SOR=1.291	GT:AD:DP:GQ:PL	0/1:106,81:187:99:2601,0,3620
1	1636330	rs192815888	G	A	5162.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.785;ClippingRankSum=-2.403;DB;DP=164;FS=3.529;MQ=49.10;MQRankSum=0.083;QD=15.36;ReadPosRankSum=1.414;SOR=0.472	GT:AD:DP:GQ:PL	0/1:87,77:164:99:2630,0,3071
1	1636994	rs185282174	A	G	28.14	LowQual;SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.588;ClippingRankSum=1.069;DB;DP=30;FS=0.000;MQ=34.86;MQRankSum=0.093;QD=1.41;ReadPosRankSum=0.197;SOR=0.015	GT:AD:DP:GQ:PL	0/0:29,1:30:45:0,45,1059
1	1637238	rs78107173	A	G	23.17	LowQual;SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=1.658;ClippingRankSum=-0.042;DB;DP=31;FS=42.854;MQ=43.12;MQRankSum=-2.908;QD=0.86;ReadPosRankSum=1.092;SOR=3.584	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,2266
1	1639046	rs138369165	C	G	3348.92	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=2.513;ClippingRankSum=2.787;DB;DP=111;FS=70.423;MQ=37.26;MQRankSum=-6.657;QD=9.74;ReadPosRankSum=-2.317;SOR=5.226	GT:AD:DP:GQ:PL	0/1:79,32:111:99:1122,0,5669
1	1639062	rs149613000	T	C	2657.92	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.646;DB;DP=103;FS=70.805;MQ=37.47;MQRankSum=-6.817;QD=8.77;ReadPosRankSum=-1.467;SOR=6.263	GT:AD:DP:GQ:PL	0/1:74,29:103:99:978,0,5500
1	1639801	rs74378830	T	C	1340.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.976;DB;DP=42;FS=3.902;MQ=47.18;MQRankSum=-9.174;QD=11.76;ReadPosRankSum=1.021;SOR=1.324	GT:AD:DP:GQ:PL	0/1:19,23:42:99:643,0,710
1	1640808	.	C	T	31.84	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=-0.322;DP=4;FS=0.000;MQ=27.00;MQRankSum=-0.684;QD=7.96;ReadPosRankSum=-0.684;SOR=0.368	GT:AD:DP:GQ:PL	0/1:1,3:4:20:61,0,20
1	1643954	.	T	A	56.95	SNP_MappingQuality	AC=0;AF=0.00;AN=0;BaseQRankSum=-0.727;ClippingRankSum=-0.727;DP=4;FS=0.000;MQ=27.00;MQRankSum=0.727;QD=14.24;ReadPosRankSum=0.727;SOR=1.609	GT	./.
1	1644572	rs2143105	A	G	233.66	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=28.32;QD=29.21;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
1	1644836	rs2179382	G	A	1454.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.521;DB;DP=49;FS=5.159;MQ=44.43;MQRankSum=3.233;QD=9.15;ReadPosRankSum=1.723;SOR=0.686	GT:AD:DP:GQ:PL	0/1:38,11:49:99:264,0,1246
1	1644908	rs2179383	C	T	1529.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.000;MQ=32.85;QD=33.26;SOR=0.737	GT:AD:DP:GQ:PL	1/1:0,13:13:39:453,39,0
1	1645050	rs77869096	C	T	2110.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.000;MQ=34.13;QD=34.94;SOR=1.649	GT:AD:DP:GQ:PL	1/1:0,19:19:57:675,57,0
1	1645093	rs80318714	C	T	896.11	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=26.82;QD=33.20;SOR=6.184	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
1	1645113	rs201419561	T	C	376.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;ClippingRankSum=-0.417;DB;DP=7;FS=0.000;MQ=32.05;MQRankSum=-1.017;QD=10.77;ReadPosRankSum=1.183;SOR=1.270	GT:AD:DP:GQ:PL	0/1:4,3:7:85:85,0,112
1	1645115	rs78711691	C	T	1541.91	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MQ=31.96;QD=31.67;SOR=4.921	GT:AD:DP:GQ:PL	1/1:0,8:8:24:341,24,0
1	1645190	rs113713941	T	C	1409.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=-1.374;DB;DP=37;FS=0.972;MQ=36.07;MQRankSum=1.458;QD=12.70;ReadPosRankSum=0.332;SOR=0.896	GT:AD:DP:GQ:PL	0/1:23,14:37:99:427,0,741
1	1645366	rs7528782	A	G	443.04	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MQ=25.64;QD=27.69;SOR=1.244	GT:AD:DP:GQ:PL	1/1:0,6:6:18:178,18,0
1	1645434	rs200479157	C	T	83.70	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-1.380;DB;DP=2;FS=0.000;MQ=26.10;MQRankSum=0.720;QD=13.95;ReadPosRankSum=-0.720;SOR=1.329	GT:AD:DP:GQ:PL	0/1:1,1:2:26:26,0,26
1	1645511	rs192900125	C	G	64.55	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=25.16;QD=21.52;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
1	1645687	rs200159051	G	A	1362.30	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;ClippingRankSum=-2.304;DB;DP=23;FS=26.384;MQ=29.98;MQRankSum=2.009;QD=24.33;ReadPosRankSum=0.200;SOR=4.219	GT:AD:DP:GQ:PL	0/1:8,15:23:99:456,0,163
1	1645838	rs33938712	CA	C	552.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=44.54;QD=34.51;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
1	1646074	rs201159473	A	G	4336.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;ClippingRankSum=0.305;DB;DP=32;FS=31.889;MQ=34.23;MQRankSum=2.661;QD=26.30;ReadPosRankSum=-0.044;SOR=4.954	GT:AD:DP:GQ:PL	0/1:5,27:32:99:1115,0,181
1	1646077	rs76473385	G	T	4447.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.037;DB;DP=33;FS=32.456;MQ=34.40;MQRankSum=1.957;QD=30.82;ReadPosRankSum=-1.935;SOR=5.016	GT:AD:DP:GQ:PL	0/1:5,28:33:99:1151,0,178
1	1646113	rs199941510	G	C	5358.93	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;ClippingRankSum=-0.106;DB;DP=48;FS=34.344;MQ=34.11;MQRankSum=1.943;QD=34.13;ReadPosRankSum=3.109;SOR=4.284	GT:AD:DP:GQ:PL	1/1:4,44:48:17:1523,17,0
1	1646231	rs200994957	T	C	2746.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MQ=30.87;QD=28.73;SOR=3.947	GT:AD:DP:GQ:PL	1/1:0,16:16:51:724,51,0
1	1646236	rs202149796	C	T	2456.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.000;MQ=29.85;QD=28.26;SOR=3.180	GT:AD:DP:GQ:PL	1/1:0,15:15:48:688,48,0
1	1646371	rs115815404	G	T	3104.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=-1.286;DB;DP=51;FS=2.387;MQ=46.40;MQRankSum=0.511;QD=15.68;ReadPosRankSum=0.081;SOR=0.926	GT:AD:DP:GQ:PL	0/1:28,23:51:99:776,0,973
1	1646427	rs138665669	T	G	4008.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.309;DB;DP=31;FS=0.000;MQ=39.60;MQRankSum=0.742;QD=30.37;ReadPosRankSum=-0.990;SOR=1.574	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1135,93,0
1	1646450	rs141565668	G	A	3361.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.093;ClippingRankSum=-1.397;DB;DP=27;FS=0.000;MQ=38.29;MQRankSum=0.615;QD=28.30;ReadPosRankSum=-0.205;SOR=0.709	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1048,81,0
1	1646574	rs760925	T	C	1903.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.000;MQ=37.00;QD=32.63;SOR=1.426	GT:AD:DP:GQ:PL	1/1:0,15:15:45:620,45,0
1	1646657	rs760926	T	C	3983.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MQ=37.76;QD=30.34;SOR=2.810	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1195,87,0
1	1646789	rs760927	T	C	2091.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.000;MQ=38.34;QD=32.10;SOR=0.732	GT:AD:DP:GQ:PL	1/1:0,15:15:45:660,45,0
1	1647686	rs909823	A	C	5701.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.000;MQ=56.06;QD=26.06;SOR=6.502	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1733,120,0
1	1647722	rs114460890	G	T	2327.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=1.316;DB;DP=67;FS=0.000;MQ=60.04;MQRankSum=-1.286;QD=9.78;ReadPosRankSum=-1.611;SOR=0.456	GT:AD:DP:GQ:PL	0/1:48,19:67:99:773,0,2033
1	1647725	.	G	A	2390.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.915;ClippingRankSum=0.084;DP=72;FS=0.000;MQ=60.04;MQRankSum=1.887;QD=9.60;ReadPosRankSum=-0.947;SOR=0.486	GT:AD:DP:GQ:PL	0/1:50,22:72:99:803,0,2198
1	1647726	rs80025558	T	G	2519.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;ClippingRankSum=0.581;DB;DP=75;FS=0.000;MQ=60.03;MQRankSum=-0.575;QD=9.92;ReadPosRankSum=-0.519;SOR=0.480	GT:AD:DP:GQ:PL	0/1:53,22:75:99:803,0,2198
1	1647729	.	C	T	2858.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=-1.060;DP=72;FS=0.000;MQ=60.04;MQRankSum=-1.086;QD=11.21;ReadPosRankSum=-0.293;SOR=0.962	GT:AD:DP:GQ:PL	0/1:49,23:72:99:935,0,2105
1	1647730	.	A	G	2903.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=-0.379;DP=72;FS=0.000;MQ=60.04;MQRankSum=-0.502;QD=11.39;ReadPosRankSum=0.046;SOR=0.962	GT:AD:DP:GQ:PL	0/1:49,23:72:99:938,0,2063
1	1647745	rs72634830	G	A	4082.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.789;ClippingRankSum=0.697;DB;DP=83;FS=2.792;MQ=60.04;MQRankSum=-1.228;QD=14.58;ReadPosRankSum=0.093;SOR=1.519	GT:AD:DP:GQ:PL	0/1:49,34:83:99:1316,0,2036
1	1647753	rs74045984	C	T	4738.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=-1.080;DB;DP=95;FS=3.902;MQ=60.00;MQRankSum=1.013;QD=15.34;ReadPosRankSum=0.483;SOR=1.663	GT:AD:DP:GQ:PL	0/1:56,39:95:99:1508,0,2273
1	1647778	rs72901773	C	G	7110.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.640;DB;DP=134;FS=7.054;MQ=59.98;MQRankSum=-1.490;QD=15.91;ReadPosRankSum=0.873;SOR=1.431	GT:AD:DP:GQ:PL	0/1:72,62:134:99:2269,0,2666
1	1647814	rs72901775	T	C	7970.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.260;ClippingRankSum=-0.133;DB;DP=147;FS=18.930;MQ=60.00;MQRankSum=-0.210;QD=14.87;ReadPosRankSum=1.678;SOR=1.914	GT:AD:DP:GQ:PL	0/1:76,71:147:99:2570,0,2742
1	1647871	rs72909014	T	C	9328.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.462;ClippingRankSum=-0.567;DB;DP=172;FS=11.989;MQ=59.98;MQRankSum=0.125;QD=13.64;ReadPosRankSum=-1.160;SOR=0.893	GT:AD:DP:GQ:PL	0/1:98,74:172:99:2615,0,3616
1	1647893	rs199866927	C	CTTTCTT	8597.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;ClippingRankSum=-0.516;DB;DP=145;FS=4.201;MQ=59.98;MQRankSum=0.984;QD=13.46;ReadPosRankSum=0.252;SOR=0.451	GT:AD:DP:GQ:PL	0/1:89,56:145:99:2209,0,3523
1	1647928	rs1883424	A	G	3446.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.921;ClippingRankSum=-0.177;DB;DP=142;FS=0.000;MQ=59.80;MQRankSum=0.585;QD=6.58;ReadPosRankSum=2.879;SOR=0.685	GT:AD:DP:GQ:PL	0/1:108,34:142:99:1022,0,4217
1	1647968	rs146207119	C	CAT	4027.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.598;ClippingRankSum=-0.693;DB;DP=86;FS=21.533;MQ=58.86;MQRankSum=0.225;QD=12.39;ReadPosRankSum=1.991;SOR=2.528	GT:AD:DP:GQ:PL	0/1:52,34:86:99:1254,0,2100
1	1647971	rs77394327	G	A	3993.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=-0.136;DB;DP=82;FS=17.452;MQ=58.71;MQRankSum=-0.902;QD=13.14;ReadPosRankSum=1.864;SOR=2.354	GT:AD:DP:GQ:PL	0/1:49,33:82:99:1223,0,2145
1	1647983	rs74429813	T	A	3065.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.055;DB;DP=65;FS=6.563;MQ=57.30;MQRankSum=1.709;QD=12.36;ReadPosRankSum=1.693;SOR=1.722	GT:AD:DP:GQ:PL	0/1:37,28:65:99:1064,0,1469
1	1647990	rs76519969	C	T	2651.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.242;DB;DP=61;FS=0.000;MQ=56.09;MQRankSum=1.379;QD=11.73;ReadPosRankSum=1.273;SOR=0.551	GT:AD:DP:GQ:PL	0/1:38,23:61:99:929,0,1604
1	1648002	rs77107184	C	T	2723.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;ClippingRankSum=0.887;DB;DP=65;FS=0.000;MQ=54.16;MQRankSum=1.894;QD=11.95;ReadPosRankSum=-1.636;SOR=0.436	GT:AD:DP:GQ:PL	0/1:42,23:65:99:842,0,1734
1	1648018	rs79409185	C	T	2413.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.513;DB;DP=62;FS=0.000;MQ=50.34;MQRankSum=-2.660;QD=10.78;ReadPosRankSum=-5.564;SOR=0.899	GT:AD:DP:GQ:PL	0/1:43,19:62:99:625,0,1790
1	1648027	rs61776857	T	C	8600.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=47.93;QD=36.84;SOR=7.318	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2211,156,0
1	1650787	rs1137003	T	C	4075.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.196;DB;DP=63;FS=5.690;MQ=60.00;MQRankSum=0.571;QD=14.45;ReadPosRankSum=3.112;SOR=0.423	GT:AD:DP:GQ:PL	0/1:37,26:63:99:1018,0,1508
1	1650797	rs1059830	A	G	4412.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.718;DB;DP=71;FS=6.200;MQ=60.00;MQRankSum=0.222;QD=14.76;ReadPosRankSum=0.463;SOR=0.428	GT:AD:DP:GQ:PL	0/1:41,30:71:99:1175,0,1670
1	1650801	rs1137004	T	C	4179.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=-0.782;DB;DP=71;FS=6.234;MQ=60.00;MQRankSum=-1.013;QD=13.84;ReadPosRankSum=0.668;SOR=0.417	GT:AD:DP:GQ:PL	0/1:41,30:71:99:1133,0,1668
1	1650807	rs1137005	T	C	6469.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=1.163;DB;DP=74;FS=6.909;MQ=60.00;MQRankSum=-0.485;QD=20.60;ReadPosRankSum=0.489;SOR=1.096	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1541,0,1304
1	1650832	rs72909030	A	G	4233.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=-0.708;DB;DP=72;FS=13.521;MQ=60.00;MQRankSum=-1.224;QD=12.64;ReadPosRankSum=0.011;SOR=0.319	GT:AD:DP:GQ:PL	0/1:43,29:72:99:988,0,1843
1	1650845	rs1059831	G	A	7771.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.244;ClippingRankSum=-2.018;DB;DP=75;FS=15.608;MQ=60.00;MQRankSum=-0.464;QD=22.02;ReadPosRankSum=0.624;SOR=1.172	GT:AD:DP:GQ:PL	0/1:31,44:75:99:1695,0,1149
1	1650920	rs36191908	G	A	2747.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.437;ClippingRankSum=-0.979;DB;DP=80;FS=30.456;MQ=59.91;MQRankSum=-0.494;QD=8.84;ReadPosRankSum=-1.509;SOR=2.186	GT:AD:DP:GQ:PL	0/1:61,19:80:99:569,0,2446
1	1650938	.	CGG	C	3589.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;ClippingRankSum=0.297;DP=73;FS=29.891;MQ=59.90;MQRankSum=1.053;QD=12.38;ReadPosRankSum=-0.952;SOR=2.328	GT:AD:DP:GQ:PL	0/1:43,30:73:99:1169,0,1747
1	1650942	.	A	AAG	3629.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=1.728;DP=74;FS=26.211;MQ=59.90;MQRankSum=-0.981;QD=12.78;ReadPosRankSum=-1.777;SOR=2.229	GT:AD:DP:GQ:PL	0/1:43,31:74:99:1211,0,1751
1	1650960	rs72634834	G	A	3501.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.708;ClippingRankSum=-1.522;DB;DP=69;FS=31.917;MQ=59.90;MQRankSum=-1.455;QD=12.64;ReadPosRankSum=-0.497;SOR=3.021	GT:AD:DP:GQ:PL	0/1:41,28:69:99:1114,0,1757
1	1650967	rs75384210	T	C	3048.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=-1.701;DB;DP=67;FS=22.502;MQ=59.89;MQRankSum=-0.518;QD=11.38;ReadPosRankSum=0.617;SOR=2.781	GT:AD:DP:GQ:PL	0/1:41,26:67:99:949,0,1707
1	1650996	rs74223875	T	C	2203.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.159;ClippingRankSum=1.266;DB;DP=51;FS=8.012;MQ=59.87;MQRankSum=-0.139;QD=9.93;ReadPosRankSum=-0.433;SOR=1.762	GT:AD:DP:GQ:PL	0/1:33,18:51:99:630,0,1301
1	1651003	rs76941027	G	A	2006.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.157;ClippingRankSum=-0.369;DB;DP=46;FS=4.498;MQ=59.91;MQRankSum=-1.535;QD=10.09;ReadPosRankSum=-0.809;SOR=1.363	GT:AD:DP:GQ:PL	0/1:32,14:46:99:531,0,1269
1	1651054	.	CTT	C	50.18	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=-1.932;DP=4;FS=0.000;MQ=58.81;MQRankSum=-0.387;QD=0.80;ReadPosRankSum=-1.031;SOR=0.859	GT:AD:DP:GQ:PL	0/1:3,1:4:19:19,0,83
1	1651077	rs70937183	C	CTCGCTCTGTCACCCAGGCT	1296.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=55.69;QD=30.20;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,3:3:12:179,12,0
1	1653004	rs36039898	T	C	8295.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.000;MQ=39.08;QD=28.30;SOR=2.899	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2523,193,0
1	1653028	rs16825265	C	T	8372.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.000;MQ=43.15;QD=30.64;SOR=2.223	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2339,175,0
1	1653885	rs61777493	C	A	5238.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.000;MQ=53.16;QD=29.43;SOR=9.673	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2319,166,0
1	1654007	rs199558549	A	T	146.57	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=4.771;MQ=28.11;MQRankSum=-0.736;QD=24.43;ReadPosRankSum=0.736;SOR=3.590	GT:AD:DP:GQ:PL	0/1:1,2:3:35:80,0,35
1	1654011	.	TAC	T	76.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=1.026;DP=4;FS=4.771;MQ=36.20;MQRankSum=-1.026;QD=12.68;ReadPosRankSum=0.000;SOR=2.209	GT:AD:DP:GQ:PL	0/1:2,2:4:35:80,0,35
1	1654038	rs61777494	G	A	1148.55	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.950;DB;DP=10;FS=0.000;MQ=37.07;MQRankSum=-0.503;QD=27.76;ReadPosRankSum=-0.839;SOR=0.648	GT:AD:DP:GQ:PL	0/1:1,9:10:15:325,0,15
1	1654058	rs61777495	C	T	4655.13	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=1.011;DB;DP=41;FS=9.290;MQ=43.08;MQRankSum=1.803;QD=32.80;ReadPosRankSum=-0.150;SOR=0.118	GT:AD:DP:GQ:PL	0/1:4,37:41:51:1626,0,51
1	1654064	rs200615789	A	T	5673.13	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985;ClippingRankSum=-1.065;DB;DP=49;FS=16.823;MQ=44.52;MQRankSum=2.373;QD=27.81;ReadPosRankSum=-0.097;SOR=0.429	GT:AD:DP:GQ:PL	0/1:5,44:49:68:1942,0,68
1	1654065	rs35174499	AGCG	A	5665.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;ClippingRankSum=-1.214;DB;DP=52;FS=17.093;MQ=45.09;MQRankSum=2.324;QD=32.11;ReadPosRankSum=-0.463;SOR=0.471	GT:AD:DP:GQ:PL	0/1:5,47:52:68:1942,0,68
1	1654379	rs200326357	TAAG	T	2976.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.000;MQ=39.33;QD=27.16;SOR=8.439	GT:AD:DP:GQ:PL	1/1:0,19:19:57:855,57,0
1	1657021	rs9439499	T	C	692.16	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.540;DB;DP=16;FS=0.000;MQ=29.26;MQRankSum=-0.936;QD=11.54;ReadPosRankSum=0.966;SOR=0.542	GT:AD:DP:GQ:PL	1/1:0,16:16:48:510,48,0
1	1661704	rs710322	A	G	816.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=-0.937;DB;DP=121;FS=2.417;MQ=50.27;MQRankSum=-8.723;QD=4.32;ReadPosRankSum=-1.419;SOR=0.955	GT:AD:DP:GQ:PL	0/1:103,18:121:99:225,0,3746
1	1661844	rs61777505	G	C	9556.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=-1.032;DB;DP=165;FS=3.349;MQ=41.45;MQRankSum=0.943;QD=21.47;ReadPosRankSum=0.156;SOR=0.956	GT:AD:DP:GQ:PL	0/1:117,48:165:99:1326,0,3758
1	1663605	rs66653340	A	G	2930.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MQ=59.66;QD=29.07;SOR=5.728	GT:AD:DP:GQ:PL	1/1:0,16:16:48:689,48,0
1	1663831	rs3817856	C	T	6545.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=-0.008;DB;DP=83;FS=2.206;MQ=60.00;MQRankSum=0.963;QD=24.89;ReadPosRankSum=2.531;SOR=0.868	GT:AD:DP:GQ:PL	0/1:49,34:83:99:1104,0,1865
1	1663851	rs2294486	G	C	3421.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=-0.012;DB;DP=72;FS=9.371;MQ=60.00;MQRankSum=0.599;QD=21.25;ReadPosRankSum=-0.332;SOR=0.351	GT:AD:DP:GQ:PL	0/1:34,38:72:99:1512,0,1351
1	1663861	rs2294487	G	A	3492.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.823;DB;DP=73;FS=11.459;MQ=60.00;MQRankSum=1.412;QD=21.04;ReadPosRankSum=1.703;SOR=0.581	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1516,0,1338
1	1664019	rs2294488	T	C	10515.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MQ=60.00;QD=34.52;SOR=2.236	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2925,207,0
1	1664124	rs2294489	T	C	6781.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=60.00;QD=32.50;SOR=3.726	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1821,126,0
1	1666251	rs77655487	G	A	6543.20	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=-0.176;DB;DP=90;FS=187.360;MQ=32.03;MQRankSum=3.648;QD=26.17;ReadPosRankSum=-2.947;SOR=1.935	GT:AD:DP:GQ:PL	0/1:13,77:90:99:2524,0,123
1	1666338	rs2072924	G	A	8203.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.000;MQ=42.77;QD=22.12;SOR=0.908	GT:AD:DP:GQ:PL	1/1:0,79:79:99:3352,242,0
1	1666342	rs76084492	A	G	2635.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.407;ClippingRankSum=-1.227;DB;DP=81;FS=10.922;MQ=43.73;MQRankSum=-8.747;QD=13.51;ReadPosRankSum=-1.611;SOR=0.307	GT:AD:DP:GQ:PL	0/1:60,21:81:99:583,0,2124
1	1669646	rs201497363	ACT	A	828.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;ClippingRankSum=-1.443;DB;DP=23;FS=6.817;MQ=32.89;MQRankSum=1.350;QD=16.56;ReadPosRankSum=0.989;SOR=0.070	GT:AD:DP:GQ:PL	0/1:8,15:23:99:546,0,264
1	1669734	rs80140081	G	T	10597.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=-1.617;DB;DP=96;FS=18.601;MQ=54.14;MQRankSum=12.114;QD=28.80;ReadPosRankSum=-1.353;SOR=1.629	GT:AD:DP:GQ:PL	0/1:44,52:96:99:1874,0,1713
1	1669748	rs115554296	A	G	3763.16	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;ClippingRankSum=-0.365;DB;DP=106;FS=9.913;MQ=53.98;MQRankSum=-13.046;QD=17.18;ReadPosRankSum=3.258;SOR=0.267	GT:AD:DP:GQ:PL	0/1:54,52:106:99:1849,0,2098
1	1669844	.	CCA	C	2450.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=-0.600;DP=45;FS=0.000;MQ=36.26;MQRankSum=-0.258;QD=17.75;ReadPosRankSum=1.119;SOR=0.795	GT:AD:DP:GQ:PL	0/1:22,23:45:99:899,0,858
1	1669964	.	G	A	1352.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.045;DP=45;FS=0.000;MQ=38.39;MQRankSum=0.645;QD=14.38;ReadPosRankSum=-0.721;SOR=0.312	GT:AD:DP:GQ:PL	0/1:24,21:45:99:690,0,829
1	1670570	rs150051592	T	C	835.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.541;DB;DP=43;FS=58.020;MQ=41.34;MQRankSum=-7.854;QD=4.72;ReadPosRankSum=-0.125;SOR=4.583	GT:AD:DP:GQ:PL	0/1:33,10:43:99:183,0,1054
1	1670958	rs146637450	C	G	3167.58	SNP_MappingQuality;SNP_StrandBias	AC=2;AF=1.00;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.963;DB;DP=35;FS=109.702;MQ=27.40;MQRankSum=-1.499;QD=26.40;ReadPosRankSum=0.247;SOR=8.051	GT:AD:DP:GQ:PL	1/1:2,33:35:41:942,41,0
1	1671322	.	C	T	38.88	SNP_MappingQuality	AC=0;AF=0.00;AN=0;DP=2;FS=0.000;MQ=27.00;QD=19.44;SOR=2.303	GT	./.
1	1684347	.	C	CCCT	1972.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.859;DP=50;FS=0.000;MQ=59.25;MQRankSum=0.316;QD=11.14;ReadPosRankSum=-0.951;SOR=0.701	GT:AD:DP:GQ:PL	0/1:27,23:50:99:863,0,1058
1	1684472	rs7407	C	T	3596.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=-0.347;DB;DP=106;FS=0.968;MQ=59.94;MQRankSum=0.070;QD=16.35;ReadPosRankSum=2.628;SOR=0.606	GT:AD:DP:GQ:PL	0/1:60,46:106:99:1651,0,2212
1	1685213	rs2072928	C	G	7913.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MQ=60.00;QD=31.49;SOR=0.959	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2170,151,0
1	1685921	rs139385870	TCCCTGGGACCGAAGTCGCCCCA	T	3360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=1.307;DB;DP=101;FS=3.603;MQ=60.23;MQRankSum=-0.605;QD=15.27;ReadPosRankSum=-0.486;SOR=0.491	GT:AD:DP:GQ:PL	0/1:55,46:101:99:1728,0,10833
1	1686040	rs4751	G	T	12773.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;ClippingRankSum=0.827;DB;DP=144;FS=0.624;MQ=60.02;MQRankSum=0.479;QD=28.13;ReadPosRankSum=2.369;SOR=0.627	GT:AD:DP:GQ:PL	0/1:78,66:144:99:2362,0,2898
1	1686943	rs2072929	T	C	6606.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=-1.578;DB;DP=74;FS=2.532;MQ=60.00;MQRankSum=-0.495;QD=30.44;ReadPosRankSum=0.818;SOR=1.158	GT:AD:DP:GQ:PL	0/1:34,40:74:99:1503,0,2513
1	1686962	rs2076327	C	T	5789.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.220;DB;DP=62;FS=0.000;MQ=60.00;MQRankSum=1.104;QD=29.54;ReadPosRankSum=1.709;SOR=0.779	GT:AD:DP:GQ:PL	0/1:33,29:62:99:1085,0,2474
1	1687625	rs34306661	T	C	3645.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.934;DB;DP=41;FS=4.271;MQ=60.00;MQRankSum=-0.074;QD=27.61;ReadPosRankSum=1.515;SOR=1.826	GT:AD:DP:GQ:PL	0/1:17,24:41:99:911,0,605
1	1687791	rs72634840	C	T	4050.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;ClippingRankSum=0.186;DB;DP=110;FS=2.042;MQ=60.00;MQRankSum=0.077;QD=18.00;ReadPosRankSum=1.941;SOR=0.569	GT:AD:DP:GQ:PL	0/1:62,48:110:99:1692,0,2309
1	1688096	rs72634841	C	T	3543.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=1.685;DB;DP=104;FS=0.000;MQ=60.00;MQRankSum=2.516;QD=15.96;ReadPosRankSum=3.473;SOR=0.696	GT:AD:DP:GQ:PL	0/1:62,42:104:99:1455,0,2280
1	1688192	rs2281173	A	G	11063.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.000;MQ=60.00;QD=29.24;SOR=0.824	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3912,273,0
1	1688384	rs79052177	G	A	862.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.075;ClippingRankSum=-1.198;DB;DP=77;FS=2.894;MQ=60.00;MQRankSum=0.589;QD=18.34;ReadPosRankSum=-0.184;SOR=0.304	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,230,3218
1	1688469	rs4648623	C	G	6748.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.000;MQ=60.00;QD=27.80;SOR=2.621	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2115,147,0
1	1688513	rs4648624	G	T	2996.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.414;DB;DP=37;FS=0.000;MQ=60.00;MQRankSum=-1.905;QD=26.51;ReadPosRankSum=0.513;SOR=0.728	GT:AD:DP:GQ:PL	0/1:21,16:37:99:588,0,776
1	1688586	.	C	CA	64.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=-0.304;DP=13;FS=34.299;MQ=60.00;MQRankSum=-0.747;QD=2.79;ReadPosRankSum=0.526;SOR=4.160	GT:AD:DP:GQ:PL	0/1:10,3:13:53:53,0,351
1	1688592	.	A	C	54.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;ClippingRankSum=-0.098;DP=11;FS=21.992;MQ=60.00;MQRankSum=-1.128;QD=2.58;ReadPosRankSum=0.000;SOR=4.164	GT:AD:DP:GQ:PL	0/1:8,3:11:50:50,0,393
1	1688594	.	G	C	63.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.525;ClippingRankSum=0.075;DP=10;FS=17.527;MQ=60.00;MQRankSum=0.975;QD=2.87;ReadPosRankSum=-0.375;SOR=3.901	GT:AD:DP:GQ:PL	0/1:7,3:10:59:59,0,327
1	1689762	rs2235537	T	C	3673.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.028;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=0.914;QD=28.26;ReadPosRankSum=1.011;SOR=1.126	GT:AD:DP:GQ:PL	0/1:21,21:42:99:785,0,779
1	1690126	rs79655042	A	AAC	7007.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.000;MQ=60.45;QD=31.12;SOR=6.466	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1798,123,0
1	1690793	rs2235538	G	A	562.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=1.064;DB;DP=27;FS=2.472;MQ=60.00;MQRankSum=1.117;QD=12.22;ReadPosRankSum=-0.324;SOR=1.528	GT:AD:DP:GQ:PL	0/1:17,10:27:99:328,0,664
1	1693726	rs17162854	A	G	1220.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=-0.328;DB;DP=23;FS=0.000;MQ=60.00;MQRankSum=0.552;QD=25.96;ReadPosRankSum=1.405;SOR=0.307	GT:AD:DP:GQ:PL	0/1:7,16:23:99:629,0,237
1	1696659	rs75906779	A	G	7917.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;ClippingRankSum=1.602;DB;DP=52;FS=0.000;MQ=60.00;MQRankSum=-1.436;QD=23.43;ReadPosRankSum=0.361;SOR=5.443	GT:AD:DP:GQ:PL	1/1:1,51:52:99:2200,147,0
1	1718642	rs79370402	C	A	656.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=1.407;DB;DP=65;FS=1.032;MQ=60.00;MQRankSum=-0.378;QD=10.09;ReadPosRankSum=-0.054;SOR=0.498	GT:AD:DP:GQ:PL	0/1:43,22:65:99:687,0,1706
1	1724503	.	C	CA	1319.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.566;DP=33;FS=0.000;MQ=60.10;MQRankSum=-1.137;QD=11.88;ReadPosRankSum=-0.145;SOR=1.609	GT:AD:DP:GQ:PL	0/1:15,18:33:99:386,0,230
1	1749412	rs115507312	T	G	3255.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.487;DB;DP=69;FS=5.635;MQ=60.00;MQRankSum=1.180;QD=17.31;ReadPosRankSum=1.835;SOR=1.106	GT:AD:DP:GQ:PL	0/1:34,35:69:99:1234,0,1251
1	1823922	rs6688000	A	G	17091.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;FS=0.000;MQ=60.00;QD=33.34;SOR=1.181	GT:AD:DP:GQ:PL	1/1:0,130:130:99:5507,389,0
1	1846582	rs2748987	A	G	5534.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.000;MQ=60.00;QD=39.60;SOR=5.800	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1656,119,0
1	1846765	rs2247560	G	A	3065.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=-0.397;DB;DP=81;FS=0.468;MQ=60.00;MQRankSum=0.054;QD=18.03;ReadPosRankSum=1.466;SOR=0.658	GT:AD:DP:GQ:PL	0/1:42,39:81:99:1410,0,1530
1	1847856	rs2748986	G	T	5719.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=-0.669;DB;DP=152;FS=2.487;MQ=60.00;MQRankSum=-2.661;QD=19.26;ReadPosRankSum=-0.099;SOR=0.498	GT:AD:DP:GQ:PL	0/1:61,91:152:99:3407,0,2148
1	1848109	rs2803296	G	C	6346.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.769;DB;DP=186;FS=7.931;MQ=60.00;MQRankSum=0.143;QD=16.97;ReadPosRankSum=0.035;SOR=1.225	GT:AD:DP:GQ:PL	0/1:86,100:186:99:3639,0,2990
1	1848734	rs941532	A	G	2801.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.000;MQ=60.00;QD=30.51;SOR=5.518	GT:AD:DP:GQ:PL	1/1:0,19:19:57:823,57,0
1	1849529	rs28640257	A	G	6132.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;ClippingRankSum=0.495;DB;DP=179;FS=1.197;MQ=60.00;MQRankSum=-1.151;QD=17.93;ReadPosRankSum=1.153;SOR=0.803	GT:AD:DP:GQ:PL	0/1:89,90:179:99:3269,0,3380
1	1849923	rs72634869	C	A	2486.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=-0.480;DB;DP=127;FS=10.855;MQ=60.00;MQRankSum=-0.939;QD=19.42;ReadPosRankSum=5.096;SOR=1.428	GT:AD:DP:GQ:PL	0/1:58,69:127:99:2517,0,2095
1	1850428	rs2295363	A	G	441.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=-2.091;DB;DP=16;FS=1.245;MQ=60.00;MQRankSum=0.691;QD=12.98;ReadPosRankSum=0.691;SOR=0.473	GT:AD:DP:GQ:PL	0/1:10,6:16:99:196,0,389
1	1850627	.	CAGCGGCAGG	C	429.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.010;DP=20;FS=5.352;MQ=60.11;MQRankSum=0.527;QD=9.98;ReadPosRankSum=-0.079;SOR=0.199	GT:AD:DP:GQ:PL	0/1:11,9:20:99:332,0,957
1	1853615	rs144215015	T	TCTGA	5542.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.08;QD=29.81;SOR=6.341	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1800,120,0
1	1854109	rs2803348	A	G	3162.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=1.432;DB;DP=106;FS=9.393;MQ=59.96;MQRankSum=0.480;QD=15.06;ReadPosRankSum=0.726;SOR=1.153	GT:AD:DP:GQ:PL	0/1:53,53:106:99:1834,0,1945
1	1854321	rs2250833	A	G	10105.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;FS=0.000;MQ=60.00;QD=28.66;SOR=0.798	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3531,249,0
1	1855450	rs28423370	A	G	5207.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.000;MQ=59.98;QD=31.25;SOR=7.444	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1479,105,0
1	1855547	.	C	A	331.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.049;DP=4;FS=0.000;MQ=60.00;MQRankSum=0.342;QD=25.51;ReadPosRankSum=2.196;SOR=1.061	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,75
1	1856098	rs752965	C	T	2706.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.820;DB;DP=28;FS=8.686;MQ=60.00;MQRankSum=-0.271;QD=28.49;ReadPosRankSum=0.392;SOR=0.134	GT:AD:DP:GQ:PL	0/1:16,12:28:99:447,0,618
1	1856227	rs752966	C	T	333.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=-0.988;DB;DP=20;FS=1.255;MQ=60.00;MQRankSum=0.056;QD=9.80;ReadPosRankSum=-2.298;SOR=0.478	GT:AD:DP:GQ:PL	0/1:13,7:20:99:199,0,464
1	1858309	rs941530	T	C	7661.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;ClippingRankSum=0.733;DB;DP=219;FS=0.567;MQ=60.00;MQRankSum=-1.172;QD=18.37;ReadPosRankSum=-0.975;SOR=0.625	GT:AD:DP:GQ:PL	0/1:106,113:219:99:4129,0,3869
1	1859131	rs4648734	C	T	16853.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.088;ClippingRankSum=1.206;DB;DP=200;FS=2.645;MQ=60.00;MQRankSum=-0.515;QD=26.09;ReadPosRankSum=0.724;SOR=0.899	GT:AD:DP:GQ:PL	0/1:109,91:200:99:3266,0,3975
1	1859296	rs2748984	T	C	3837.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.105;ClippingRankSum=0.436;DB;DP=102;FS=0.000;MQ=60.00;MQRankSum=0.366;QD=18.72;ReadPosRankSum=4.842;SOR=0.345	GT:AD:DP:GQ:PL	0/1:47,55:102:99:2053,0,1717
1	1860087	rs2748983	C	T	1898.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.147;ClippingRankSum=-0.546;DB;DP=53;FS=0.000;MQ=60.00;MQRankSum=0.349;QD=15.56;ReadPosRankSum=1.443;SOR=0.617	GT:AD:DP:GQ:PL	0/1:30,23:53:99:850,0,1132
1	1861582	rs2803295	C	T	4040.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.935;ClippingRankSum=-1.766;DB;DP=115;FS=0.522;MQ=60.00;MQRankSum=0.015;QD=17.64;ReadPosRankSum=3.177;SOR=0.617	GT:AD:DP:GQ:PL	0/1:58,57:115:99:2105,0,2171
1	1870210	rs2803323	G	A	7774.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.000;MQ=60.00;QD=32.57;SOR=7.625	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2795,199,0
1	1871979	rs2748982	G	A	1352.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=-0.769;DB;DP=29;FS=2.942;MQ=60.00;MQRankSum=0.168;QD=19.88;ReadPosRankSum=1.894;SOR=1.371	GT:AD:DP:GQ:PL	0/1:13,16:29:99:591,0,432
1	1873453	rs2748981	G	A	1035.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.495;DB;DP=21;FS=2.919;MQ=60.00;MQRankSum=0.825;QD=21.57;ReadPosRankSum=2.035;SOR=1.746	GT:AD:DP:GQ:PL	0/1:13,8:21:99:292,0,434
1	1873514	rs2803326	A	G	1202.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=-1.006;DB;DP=39;FS=0.968;MQ=60.00;MQRankSum=-0.605;QD=17.42;ReadPosRankSum=-1.627;SOR=0.470	GT:AD:DP:GQ:PL	0/1:23,16:39:99:587,0,855
1	1873525	rs2803327	T	C	1046.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=-1.155;DB;DP=38;FS=8.140;MQ=60.00;MQRankSum=0.675;QD=16.09;ReadPosRankSum=1.265;SOR=0.232	GT:AD:DP:GQ:PL	0/1:22,16:38:99:579,0,809
1	1873625	rs12758705	G	A	2980.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=-1.123;DB;DP=29;FS=2.722;MQ=60.00;MQRankSum=-2.325;QD=26.85;ReadPosRankSum=1.065;SOR=0.420	GT:AD:DP:GQ:PL	0/1:14,15:29:99:532,0,532
1	1873697	rs2748980	G	A	1003.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.381;DB;DP=30;FS=6.056;MQ=60.00;MQRankSum=0.573;QD=17.60;ReadPosRankSum=-0.298;SOR=1.605	GT:AD:DP:GQ:PL	0/1:19,11:30:99:405,0,765
1	1873699	rs2748979	G	C	1003.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=-1.405;DB;DP=30;FS=4.287;MQ=60.00;MQRankSum=1.192;QD=18.24;ReadPosRankSum=-0.014;SOR=1.371	GT:AD:DP:GQ:PL	0/1:19,11:30:99:405,0,765
1	1875655	rs2803335	C	T	688.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=-0.849;DB;DP=35;FS=2.582;MQ=58.92;MQRankSum=0.634;QD=10.59;ReadPosRankSum=0.319;SOR=0.192	GT:AD:DP:GQ:PL	0/1:25,10:35:99:279,0,917
1	1875858	rs2803336	C	G	2115.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.745;DB;DP=70;FS=2.978;MQ=60.00;MQRankSum=-0.390;QD=14.79;ReadPosRankSum=0.567;SOR=0.455	GT:AD:DP:GQ:PL	0/1:42,28:70:99:1065,0,3229
1	1875859	rs2803337	A	G	2115.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=-0.207;DB;DP=70;FS=4.867;MQ=60.00;MQRankSum=-0.454;QD=14.79;ReadPosRankSum=-0.831;SOR=0.419	GT:AD:DP:GQ:PL	0/1:41,29:70:99:1065,0,3229
1	1878628	rs2803341	C	T	2710.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.329;ClippingRankSum=0.648;DB;DP=54;FS=3.416;MQ=60.00;MQRankSum=0.245;QD=21.51;ReadPosRankSum=2.166;SOR=0.249	GT:AD:DP:GQ:PL	0/1:24,30:54:99:1171,0,857
1	1886500	.	GCGGCTC	G	3225.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;ClippingRankSum=0.695;DP=32;FS=0.000;MQ=57.78;MQRankSum=-1.277;QD=24.07;ReadPosRankSum=2.850;SOR=0.809	GT:AD:DP:GQ:PL	0/1:12,20:32:99:794,0,433
1	1886507	.	ACACCGGAAGTGC	A	3186.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=-0.342;DP=34;FS=2.443;MQ=57.78;MQRankSum=0.112;QD=23.78;ReadPosRankSum=2.199;SOR=1.652	GT:AD:DP:GQ:PL	0/1:14,20:34:99:776,0,667
1	1886519	.	C	CGGCTCACACCGGAAGTGAGGCTCACACCGGAAGTGA	1172.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=-0.004;DP=34;FS=2.648;MQ=57.74;MQRankSum=1.073;QD=16.51;ReadPosRankSum=-3.923;SOR=0.183	GT:AD:DP:GQ:PL	0/1:20,14:34:99:667,0,777
1	1886756	rs142420544	G	GCTGGTGCGCGT	2186.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.833;ClippingRankSum=-0.445;DB;DP=85;FS=5.774;MQ=59.93;MQRankSum=-1.179;QD=21.02;ReadPosRankSum=-2.933;SOR=0.396	GT:AD:DP:GQ:PL	0/1:35,50:85:99:2226,0,2142
1	1886859	rs3795290	C	T	12238.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.646;ClippingRankSum=0.365;DB;DP=141;FS=0.568;MQ=60.00;MQRankSum=1.744;QD=28.20;ReadPosRankSum=2.305;SOR=0.657	GT:AD:DP:GQ:PL	0/1:75,66:141:99:2447,0,2629
1	1887019	rs28548017	A	G	18520.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;FS=0.000;MQ=60.00;QD=29.30;SOR=0.721	GT:AD:DP:GQ:PL	1/1:0,129:129:99:5449,387,0
1	1887091	rs3838976	CG	C	11103.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=-0.738;DB;DP=118;FS=4.277;MQ=60.00;MQRankSum=-1.093;QD=28.91;ReadPosRankSum=-0.673;SOR=0.853	GT:AD:DP:GQ:PL	0/1:62,56:118:99:2107,0,2371
1	1887111	rs3838975	GC	G	10858.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.740;DB;DP=111;FS=5.050;MQ=60.14;MQRankSum=0.296;QD=28.88;ReadPosRankSum=-0.331;SOR=0.948	GT:AD:DP:GQ:PL	0/1:60,51:111:99:1968,0,2339
1	1887245	rs28575980	G	A	9620.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=-0.525;DB;DP=132;FS=10.278;MQ=60.00;MQRankSum=0.518;QD=25.79;ReadPosRankSum=1.823;SOR=0.379	GT:AD:DP:GQ:PL	0/1:73,59:132:99:2109,0,2675
1	1888193	rs3820011	C	A	9783.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.376;ClippingRankSum=0.278;DB;DP=89;FS=1.508;MQ=60.00;MQRankSum=-0.479;QD=28.61;ReadPosRankSum=2.621;SOR=0.597	GT:AD:DP:GQ:PL	0/1:34,55:89:99:2099,0,1192
1	1888330	rs28535696	C	T	5619.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.324;DB;DP=68;FS=5.302;MQ=60.00;MQRankSum=1.559;QD=27.96;ReadPosRankSum=2.210;SOR=3.185	GT:AD:DP:GQ:PL	0/1:33,35:68:99:1259,0,1114
1	1891263	rs2474454	A	T	1092.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.156;ClippingRankSum=-0.065;DB;DP=69;FS=0.000;MQ=60.00;MQRankSum=0.416;QD=16.55;ReadPosRankSum=1.887;SOR=0.349	GT:AD:DP:GQ:PL	0/0:69,0:69:99:0,206,2878
1	1891477	rs2748972	A	G	1414.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.933;ClippingRankSum=0.102;DB;DP=77;FS=0.000;MQ=60.00;MQRankSum=0.858;QD=18.37;ReadPosRankSum=1.644;SOR=0.632	GT:AD:DP:GQ:PL	0/1:38,39:77:99:1445,0,1432
1	1895177	rs7523728	C	T	4746.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;ClippingRankSum=2.137;DB;DP=70;FS=13.847;MQ=60.00;MQRankSum=-0.188;QD=28.09;ReadPosRankSum=1.606;SOR=2.294	GT:AD:DP:GQ:PL	1/1:0,70:70:99:3092,211,0
1	1896440	rs16824585	G	A	3287.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.619;DB;DP=44;FS=1.077;MQ=60.00;MQRankSum=0.167;QD=22.22;ReadPosRankSum=-0.684;SOR=0.792	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1915,132,0
1	1896553	rs28625839	C	T	2259.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.115;DB;DP=33;FS=0.811;MQ=60.00;MQRankSum=-0.054;QD=23.79;ReadPosRankSum=-0.601;SOR=0.835	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1402,99,0
1	1897753	rs4648600	C	G	4063.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.065;DB;DP=61;FS=3.363;MQ=60.00;MQRankSum=1.221;QD=27.83;ReadPosRankSum=2.740;SOR=0.441	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2493,182,0
1	1898045	rs28712827	G	A	2268.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.410;ClippingRankSum=-1.001;DB;DP=31;FS=9.724;MQ=60.00;MQRankSum=1.967;QD=28.36;ReadPosRankSum=0.723;SOR=0.046	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1356,93,0
1	1900024	rs56985589	TG	T	3127.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.398;DB;DP=59;FS=1.802;MQ=60.00;MQRankSum=-0.712;QD=29.23;ReadPosRankSum=0.780;SOR=1.280	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2385,178,0
1	1900106	rs61233860	T	TCTC	4696.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.793;ClippingRankSum=-0.136;DB;DP=67;FS=1.138;MQ=60.09;MQRankSum=-0.450;QD=30.11;ReadPosRankSum=-1.752;SOR=0.610	GT:AD:DP:GQ:PL	1/1:0,67:67:99:3117,211,0
1	1900225	rs72636304	C	T	1180.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;ClippingRankSum=0.302;DB;DP=89;FS=15.468;MQ=60.00;MQRankSum=0.523;QD=13.26;ReadPosRankSum=1.435;SOR=1.862	GT:AD:DP:GQ:PL	0/1:53,36:89:99:1211,0,1967
1	1900232	rs16824588	T	C	5719.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.164;ClippingRankSum=-1.590;DB;DP=88;FS=0.926;MQ=60.00;MQRankSum=0.812;QD=30.10;ReadPosRankSum=-0.092;SOR=0.754	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3847,265,0
1	1900332	rs55709963	A	G	2076.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.580;DB;DP=26;FS=7.058;MQ=59.73;MQRankSum=-1.438;QD=25.64;ReadPosRankSum=-2.279;SOR=0.111	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1162,78,0
1	1900339	rs56126097	A	G	2039.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.027;DB;DP=23;FS=8.389;MQ=59.71;MQRankSum=-0.368;QD=27.20;ReadPosRankSum=-3.442;SOR=0.078	GT:AD:DP:GQ:PL	1/1:0,23:23:75:1118,75,0
1	1916890	rs3795280	C	T	4037.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.296;ClippingRankSum=-0.527;DB;DP=63;FS=1.224;MQ=60.00;MQRankSum=-0.304;QD=26.92;ReadPosRankSum=1.051;SOR=0.808	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2600,188,0
1	1918191	rs4233028	A	G	1002.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0.881;DB;DP=21;FS=3.093;MQ=60.00;MQRankSum=-1.237;QD=25.72;ReadPosRankSum=-0.062;SOR=0.098	GT:AD:DP:GQ:PL	1/1:0,21:21:63:872,63,0
1	1918488	rs4350140	A	G	4283.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.099;ClippingRankSum=0.891;DB;DP=69;FS=0.477;MQ=60.00;MQRankSum=0.147;QD=25.20;ReadPosRankSum=0.845;SOR=0.735	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2953,207,0
1	1918535	rs4535948	A	T	3498.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.294;ClippingRankSum=-1.167;DB;DP=57;FS=0.622;MQ=60.00;MQRankSum=-0.387;QD=26.11;ReadPosRankSum=-1.029;SOR=0.603	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2483,172,0
1	1918584	rs4603072	C	T	2939.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.159;DB;DP=47;FS=0.000;MQ=60.00;MQRankSum=-1.032;QD=29.70;ReadPosRankSum=1.158;SOR=0.612	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2099,144,0
1	1918595	rs4466593	G	A	2772.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.395;DB;DP=45;FS=4.741;MQ=60.00;MQRankSum=-1.858;QD=27.73;ReadPosRankSum=0.680;SOR=0.160	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1986,135,0
1	1920434	.	T	TA	417.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053;ClippingRankSum=-0.071;DP=12;FS=1.681;MQ=60.16;MQRankSum=-1.487;QD=6.33;ReadPosRankSum=-1.350;SOR=0.411	GT:AD:DP:GQ:PL	0/1:2,10:12:16:219,0,16
1	1922303	rs13303195	C	T	2382.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.868;DB;DP=27;FS=2.532;MQ=60.00;MQRankSum=1.348;QD=25.35;ReadPosRankSum=0.323;SOR=0.483	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1175,81,0
1	1956362	rs2376805	G	A	11649.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.697;DB;DP=81;FS=3.114;MQ=60.00;MQRankSum=-0.917;QD=25.09;ReadPosRankSum=1.446;SOR=1.016	GT:AD:DP:GQ:PL	1/1:0,81:81:99:3477,244,0
1	1957037	rs2229110	T	C	13938.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=1.246;DB;DP=166;FS=0.000;MQ=60.00;MQRankSum=0.316;QD=28.21;ReadPosRankSum=-0.732;SOR=0.721	GT:AD:DP:GQ:PL	0/1:69,97:166:99:3633,0,2366
1	1960674	rs28408173	C	T	1431.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.290;ClippingRankSum=-0.683;DB;DP=82;FS=2.232;MQ=60.00;MQRankSum=0.719;QD=17.45;ReadPosRankSum=0.563;SOR=0.483	GT:AD:DP:GQ:PL	0/1:43,39:82:99:1462,0,1581
1	1960926	rs28581504	T	C	7413.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.241;ClippingRankSum=-2.150;DB;DP=60;FS=6.668;MQ=60.00;MQRankSum=-0.246;QD=34.64;ReadPosRankSum=0.999;SOR=0.311	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2558,180,0
1	1961408	rs28431879	C	T	1382.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=-0.262;DB;DP=76;FS=3.213;MQ=60.00;MQRankSum=0.943;QD=18.19;ReadPosRankSum=-1.075;SOR=1.013	GT:AD:DP:GQ:PL	0/1:38,38:76:99:1413,0,1373
1	1988168	.	CT	C	45.95	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=-1.014;DP=9;FS=0.000;MQ=58.53;MQRankSum=-0.542;QD=0.45;ReadPosRankSum=-1.108;SOR=0.693	GT:AD:DP:GQ:PL	0/1:7,2:9:23:23,0,127
1	2005740	rs2459986	T	C	8783.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.000;MQ=60.00;QD=30.45;SOR=3.173	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2751,201,0
1	2075570	rs377283	T	C	479.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.342;ClippingRankSum=-0.329;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=-0.251;QD=14.52;ReadPosRankSum=0.113;SOR=0.242	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1144
1	2075814	rs3128303	C	T	579.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.924;DB;DP=62;FS=7.493;MQ=60.00;MQRankSum=-0.263;QD=15.65;ReadPosRankSum=1.020;SOR=0.402	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,186,2633
1	2077266	rs9442616	G	A	805.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.863;ClippingRankSum=-0.720;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=-0.413;QD=16.10;ReadPosRankSum=-0.641;SOR=0.136	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,168,2350
1	2082489	rs262669	G	A	707.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.769;ClippingRankSum=-1.799;DB;DP=64;FS=0.000;MQ=60.00;MQRankSum=0.809;QD=13.60;ReadPosRankSum=2.811;SOR=0.211	GT:AD:DP:GQ:PL	0/0:64,0:64:99:0,195,4562
1	2082505	rs9442619	C	T	752.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.294;ClippingRankSum=-1.565;DB;DP=49;FS=0.000;MQ=60.00;MQRankSum=-0.337;QD=15.04;ReadPosRankSum=-0.372;SOR=0.296	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,171,4254
1	2087557	rs3123592	T	C	1284.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.911;ClippingRankSum=-0.229;DB;DP=60;FS=4.626;MQ=60.00;MQRankSum=0.733;QD=21.05;ReadPosRankSum=0.248;SOR=1.167	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,180,2587
1	2101059	rs3737633	C	G	604.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.938;ClippingRankSum=1.506;DB;DP=36;FS=0.000;MQ=60.00;MQRankSum=-0.304;QD=19.49;ReadPosRankSum=-0.319;SOR=0.109	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1521
1	2106840	rs12135175	T	C	2456.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.000;MQ=60.00;QD=30.36;SOR=8.255	GT:AD:DP:GQ:PL	1/1:0,21:21:63:880,63,0
1	2106896	rs12135178	T	C	965.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MQ=60.00;QD=32.69;SOR=6.358	GT:AD:DP:GQ:PL	1/1:0,9:9:27:386,27,0
1	2113497	rs72637873	G	A	2910.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.517;ClippingRankSum=-0.434;DB;DP=126;FS=1.595;MQ=60.00;MQRankSum=-0.076;QD=22.74;ReadPosRankSum=-0.106;SOR=0.919	GT:AD:DP:GQ:PL	0/0:126,0:126:99:0,379,5434
1	2117558	rs3123595	C	T	1050.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.327;ClippingRankSum=-0.858;DB;DP=41;FS=14.766;MQ=60.00;MQRankSum=-0.596;QD=21.88;ReadPosRankSum=-0.072;SOR=2.352	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,122,1605
1	2118539	rs2503699	T	C	1459.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.094;DB;DP=38;FS=3.084;MQ=60.00;MQRankSum=0.890;QD=23.53;ReadPosRankSum=-1.240;SOR=0.262	GT:AD:DP:GQ:PL	0/1:17,21:38:99:778,0,629
1	2118724	.	C	CT	89.10	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.461;ClippingRankSum=1.048;DP=34;FS=0.000;MQ=60.10;MQRankSum=-1.188;QD=4.46;ReadPosRankSum=-0.810;SOR=0.029	GT:AD:DP:GQ:PL	0/0:33,1:34:75:0,75,859
1	2121037	.	TGCGGGGGAGCCGAGAGGCGGGGCTGCTG	T	1995.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.599;ClippingRankSum=-0.714;DP=35;FS=17.480;MQ=59.22;MQRankSum=-1.175;QD=14.15;ReadPosRankSum=-1.841;SOR=0.068	GT:AD:DP:GQ:PL	0/0:35,0:35:98:0,98,1645
1	2121118	rs2503701	C	T	1780.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=-0.446;DB;DP=48;FS=2.985;MQ=59.27;MQRankSum=1.705;QD=14.13;ReadPosRankSum=3.796;SOR=0.482	GT:AD:DP:GQ:PL	0/1:25,23:48:99:752,0,897
1	2125172	rs1058411	G	A	1821.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.120;ClippingRankSum=1.310;DB;DP=102;FS=2.725;MQ=60.00;MQRankSum=0.433;QD=19.37;ReadPosRankSum=0.923;SOR=0.505	GT:AD:DP:GQ:PL	0/0:102,0:102:99:0,306,4252
1	2125440	rs147283443	T	C	1517.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.992;ClippingRankSum=-0.078;DB;DP=119;FS=2.500;MQ=60.00;MQRankSum=0.962;QD=17.24;ReadPosRankSum=2.293;SOR=0.985	GT:AD:DP:GQ:PL	0/0:119,0:119:99:0,356,4891
1	2126139	rs6662296	C	G	325.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=60.00;QD=25.31;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
1	2138251	rs2459999	A	G	54.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-1.026;DB;DP=3;FS=0.000;MQ=59.51;MQRankSum=0.000;QD=18.04;ReadPosRankSum=1.026;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
1	2144788	rs262695	A	G	1929.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.615;ClippingRankSum=-0.027;DB;DP=156;FS=1.748;MQ=60.00;MQRankSum=-0.444;QD=15.68;ReadPosRankSum=1.692;SOR=0.905	GT:AD:DP:GQ:PL	0/0:156,0:156:99:0,468,6646
1	2144982	rs2480714	G	T	2671.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=1.000;DB;DP=83;FS=0.000;MQ=60.00;MQRankSum=-0.509;QD=18.42;ReadPosRankSum=-0.107;SOR=0.709	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1647,0,1435
1	2234251	rs1496555	A	G	4648.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;ClippingRankSum=-0.152;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-0.264;QD=34.18;ReadPosRankSum=1.006;SOR=0.525	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1473,102,0
1	2234903	rs2256178	C	T	2894.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.553;DB;DP=75;FS=0.000;MQ=60.00;MQRankSum=2.319;QD=17.33;ReadPosRankSum=3.360;SOR=0.723	GT:AD:DP:GQ:PL	0/1:33,42:75:99:1603,0,1195
1	2235656	rs11577387	G	A	2721.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.728;ClippingRankSum=1.212;DB;DP=57;FS=1.755;MQ=60.00;MQRankSum=-0.477;QD=18.26;ReadPosRankSum=0.782;SOR=0.771	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,172,2455
1	2252759	rs35513983	A	G	837.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.562;DB;DP=47;FS=3.297;MQ=60.00;MQRankSum=-0.119;QD=18.60;ReadPosRankSum=2.828;SOR=1.199	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,2012
1	2258946	rs59142249	C	CA	111.58	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.731;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=-0.731;QD=27.90;ReadPosRankSum=0.731;SOR=0.693	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,37
1	2286947	rs1039100	A	G	5637.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.327;DB;DP=53;FS=4.521;MQ=60.00;MQRankSum=-1.172;QD=33.36;ReadPosRankSum=0.400;SOR=0.345	GT:AD:DP:GQ:PL	0/1:31,22:53:99:755,0,1193
1	2303347	.	CA	C	102.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.496;DP=17;FS=3.548;MQ=60.30;MQRankSum=0.906;QD=2.01;ReadPosRankSum=-0.564;SOR=0.250	GT:AD:DP:GQ:PL	0/1:11,6:17:81:81,0,206
1	2303566	rs2840534	A	G	1880.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.911;DB;DP=41;FS=16.256;MQ=60.00;MQRankSum=-1.920;QD=19.19;ReadPosRankSum=0.619;SOR=0.149	GT:AD:DP:GQ:PL	0/1:21,20:41:99:685,0,808
1	2323567	rs2935277	T	C	96.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.361;DB;DP=3;FS=3.522;MQ=60.00;MQRankSum=-1.159;QD=16.04;ReadPosRankSum=0.876;SOR=0.105	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
1	2328714	rs2645081	A	G	9631.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;FS=0.000;MQ=60.00;QD=26.00;SOR=8.024	GT:AD:DP:GQ:PL	1/1:0,76:76:99:3299,229,0
1	2332391	rs12037485	C	T	6625.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=-0.302;DB;DP=74;FS=1.511;MQ=60.00;MQRankSum=0.550;QD=23.66;ReadPosRankSum=-1.065;SOR=0.577	GT:AD:DP:GQ:PL	0/1:37,37:74:99:1352,0,1328
1	2334856	rs41315648	C	T	970.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.365;DB;DP=22;FS=0.000;MQ=59.73;MQRankSum=0.715;QD=17.64;ReadPosRankSum=1.901;SOR=0.283	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,905
1	2337277	rs11586985	C	T	2531.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=-0.145;DB;DP=59;FS=11.575;MQ=60.00;MQRankSum=-1.201;QD=20.25;ReadPosRankSum=0.762;SOR=1.578	GT:AD:DP:GQ:PL	0/1:25,34:59:99:1298,0,872
1	2337359	rs72642194	C	G	559.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.312;ClippingRankSum=-0.299;DB;DP=43;FS=0.000;MQ=60.00;MQRankSum=0.014;QD=12.71;ReadPosRankSum=0.333;SOR=0.329	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1847
1	2337388	rs72642195	G	T	474.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.841;ClippingRankSum=-0.211;DB;DP=35;FS=0.000;MQ=60.00;MQRankSum=-0.461;QD=12.81;ReadPosRankSum=-0.945;SOR=0.546	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1497
1	2338126	rs3795269	C	A	5747.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=-1.385;DB;DP=69;FS=9.365;MQ=60.00;MQRankSum=-0.746;QD=25.89;ReadPosRankSum=1.394;SOR=0.330	GT:AD:DP:GQ:PL	0/1:29,40:69:99:1523,0,1012
1	2340073	rs76530653	C	G	3798.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.116;ClippingRankSum=-0.521;DB;DP=66;FS=5.989;MQ=60.00;MQRankSum=0.726;QD=19.78;ReadPosRankSum=1.760;SOR=1.040	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,199,2908
1	2340200	rs2494598	T	C	6432.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=1.187;DB;DP=69;FS=7.998;MQ=60.00;MQRankSum=0.036;QD=27.14;ReadPosRankSum=-0.126;SOR=0.401	GT:AD:DP:GQ:PL	0/1:28,41:69:99:1540,0,1031
1	2362020	rs4531246	G	T	100.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.406;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=0.406;QD=33.62;ReadPosRankSum=-0.406;SOR=0.991	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
1	2399119	rs2494632	A	G	533.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.290;DB;DP=63;FS=2.243;MQ=60.00;MQRankSum=-0.314;QD=14.81;ReadPosRankSum=1.866;SOR=0.443	GT:AD:DP:GQ:PL	0/0:63,0:63:99:0,189,4724
1	2399149	rs2494631	A	G	546.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.694;DB;DP=55;FS=2.513;MQ=60.00;MQRankSum=-0.124;QD=17.62;ReadPosRankSum=0.174;SOR=0.339	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,169,4454
1	2409892	rs12727342	A	G	2708.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=-0.615;DB;DP=56;FS=0.694;MQ=60.00;MQRankSum=1.473;QD=13.48;ReadPosRankSum=-0.490;SOR=0.601	GT:AD:DP:GQ:PL	0/1:35,21:56:99:719,0,1351
1	2411451	rs10797428	A	G	6186.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.203;ClippingRankSum=0.960;DB;DP=90;FS=2.949;MQ=60.00;MQRankSum=-1.358;QD=17.58;ReadPosRankSum=1.325;SOR=0.542	GT:AD:DP:GQ:PL	0/1:44,46:90:99:1694,0,1658
1	2418935	rs10910082	C	T	4651.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=-0.734;DB;DP=79;FS=5.143;MQ=60.00;MQRankSum=0.852;QD=16.79;ReadPosRankSum=1.719;SOR=1.011	GT:AD:DP:GQ:PL	0/1:42,37:79:99:1377,0,1596
1	2420590	rs10752744	T	C	3003.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.639;DB;DP=47;FS=3.089;MQ=60.00;MQRankSum=-0.402;QD=17.99;ReadPosRankSum=-0.347;SOR=0.205	GT:AD:DP:GQ:PL	0/1:24,23:47:99:841,0,894
1	2420913	rs6668720	A	G	2574.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;ClippingRankSum=-1.411;DB;DP=48;FS=5.270;MQ=60.00;MQRankSum=-0.493;QD=15.15;ReadPosRankSum=-1.238;SOR=0.327	GT:AD:DP:GQ:PL	0/1:27,21:48:99:759,0,996
1	2422614	rs2477699	G	A	2720.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.818;DB;DP=38;FS=0.954;MQ=60.00;MQRankSum=0.744;QD=17.90;ReadPosRankSum=-0.586;SOR=0.512	GT:AD:DP:GQ:PL	0/1:20,18:38:99:600,0,689
1	2426766	rs3001347	A	G	915.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.894;DB;DP=22;FS=6.198;MQ=60.00;MQRankSum=0.669;QD=12.90;ReadPosRankSum=0.207;SOR=1.927	GT:AD:DP:GQ:PL	0/1:10,12:22:99:457,0,367
1	2428874	rs2477706	T	C	3058.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=-1.337;DB;DP=42;FS=1.063;MQ=60.00;MQRankSum=-0.547;QD=17.58;ReadPosRankSum=2.127;SOR=0.558	GT:AD:DP:GQ:PL	0/1:20,22:42:99:796,0,704
1	2430617	rs2296442	C	T	1609.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.339;DB;DP=94;FS=2.024;MQ=60.00;MQRankSum=0.588;QD=17.12;ReadPosRankSum=1.204;SOR=0.521	GT:AD:DP:GQ:PL	0/1:50,44:94:99:1640,0,1795
1	2433894	rs55874156	G	A	2352.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.613;DB;DP=67;FS=0.559;MQ=60.00;MQRankSum=-1.178;QD=17.69;ReadPosRankSum=0.733;SOR=0.619	GT:AD:DP:GQ:PL	0/1:35,32:67:99:1132,0,1446
1	2433900	rs12736998	C	T	3691.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=1.676;DB;DP=71;FS=13.400;MQ=60.00;MQRankSum=-1.303;QD=18.19;ReadPosRankSum=1.676;SOR=1.444	GT:AD:DP:GQ:PL	0/1:32,39:71:99:1425,0,1230
1	2444414	rs7535528	G	A	3391.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.025;DB;DP=56;FS=1.892;MQ=60.00;MQRankSum=0.267;QD=18.95;ReadPosRankSum=2.222;SOR=0.881	GT:AD:DP:GQ:PL	0/1:28,28:56:99:982,0,1034
1	2451298	rs34724650	G	A	1124.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.963;ClippingRankSum=-0.997;DB;DP=66;FS=0.000;MQ=60.00;MQRankSum=0.593;QD=18.74;ReadPosRankSum=-0.778;SOR=0.619	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,198,2855
1	2452569	rs2985862	T	C	3594.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=-1.049;DB;DP=58;FS=3.921;MQ=60.00;MQRankSum=0.364;QD=17.54;ReadPosRankSum=0.684;SOR=0.393	GT:AD:DP:GQ:PL	0/1:23,35:58:99:1277,0,751
1	2487663	rs2227312	C	A	5425.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=1.748;DB;DP=116;FS=1.955;MQ=60.00;MQRankSum=1.156;QD=17.06;ReadPosRankSum=-0.050;SOR=0.584	GT:AD:DP:GQ:PL	0/1:63,53:116:99:1938,0,2222
1	2487766	rs2227313	T	C	6385.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=-1.203;DB;DP=105;FS=1.255;MQ=60.00;MQRankSum=-0.752;QD=18.09;ReadPosRankSum=0.748;SOR=0.772	GT:AD:DP:GQ:PL	0/1:43,62:105:99:2270,0,1503
1	2488153	rs4870	A	G	4648.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.297;ClippingRankSum=1.070;DB;DP=77;FS=0.000;MQ=60.00;MQRankSum=1.139;QD=18.16;ReadPosRankSum=1.515;SOR=0.727	GT:AD:DP:GQ:PL	0/1:35,42:77:99:1561,0,1282
1	2490898	rs2257763	C	A	8857.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.392;DB;DP=164;FS=0.000;MQ=60.00;MQRankSum=1.342;QD=16.90;ReadPosRankSum=0.313;SOR=0.711	GT:AD:DP:GQ:PL	0/1:80,84:164:99:3050,0,2820
1	2490942	rs2281852	C	A	8511.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=-0.543;DB;DP=167;FS=0.000;MQ=60.00;MQRankSum=-0.888;QD=16.69;ReadPosRankSum=0.076;SOR=0.712	GT:AD:DP:GQ:PL	0/1:86,81:167:99:2907,0,3010
1	2491205	rs2234161	C	T	6211.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.365;ClippingRankSum=-0.845;DB;DP=103;FS=3.121;MQ=59.93;MQRankSum=0.068;QD=18.65;ReadPosRankSum=1.744;SOR=0.888	GT:AD:DP:GQ:PL	0/1:53,50:103:99:1785,0,1950
1	2494330	rs2234167	G	A	6258.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=1.192;DB;DP=156;FS=3.463;MQ=60.00;MQRankSum=-0.239;QD=16.47;ReadPosRankSum=2.251;SOR=0.950	GT:AD:DP:GQ:PL	0/1:76,80:156:99:2883,0,2750
1	2494785	rs8725	G	A	2739.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.205;ClippingRankSum=0.992;DB;DP=60;FS=0.000;MQ=60.00;MQRankSum=-0.750;QD=18.15;ReadPosRankSum=2.030;SOR=0.655	GT:AD:DP:GQ:PL	0/1:32,28:60:99:1014,0,1173
1	2518186	rs10752746	A	G	1610.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.000;MQ=60.00;QD=31.35;SOR=2.948	GT:AD:DP:GQ:PL	1/1:0,11:11:33:446,33,0
1	2520302	rs6667564	T	C	1126.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.525;ClippingRankSum=-0.535;DB;DP=77;FS=1.498;MQ=60.00;MQRankSum=0.293;QD=16.56;ReadPosRankSum=1.345;SOR=0.548	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,231,3322
1	2520500	rs6701238	G	A	701.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.249;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=-0.096;QD=21.91;ReadPosRankSum=0.765;SOR=0.446	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1711
1	2520527	rs6670198	T	C	634.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.544;ClippingRankSum=-0.528;DB;DP=45;FS=0.000;MQ=60.00;MQRankSum=0.943;QD=22.65;ReadPosRankSum=1.290;SOR=0.465	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1894
1	2522204	rs881640	G	T	193.35	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.773;ClippingRankSum=2.268;DB;DP=5;FS=5.229;MQ=60.00;MQRankSum=-0.371;QD=19.34;ReadPosRankSum=-0.536;SOR=0.039	GT:AD:DP:GQ:PL	0/0:5,0:5:15:0,15,187
1	2522392	rs2296443	G	A	2632.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=-1.000;DB;DP=57;FS=1.683;MQ=60.00;MQRankSum=-0.331;QD=17.91;ReadPosRankSum=1.055;SOR=0.417	GT:AD:DP:GQ:PL	0/1:35,22:57:99:791,0,1349
1	2523212	rs876938	G	C	1040.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.048;ClippingRankSum=0.290;DB;DP=59;FS=0.000;MQ=60.00;MQRankSum=-0.451;QD=18.57;ReadPosRankSum=2.254;SOR=0.627	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,177,2555
1	2524205	rs745368	C	T	1493.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.717;ClippingRankSum=0.467;DB;DP=121;FS=2.011;MQ=60.00;MQRankSum=-0.198;QD=15.24;ReadPosRankSum=1.576;SOR=0.995	GT:AD:DP:GQ:PL	0/0:121,0:121:99:0,362,5145
1	2524457	rs745367	T	C	671.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.101;ClippingRankSum=-0.617;DB;DP=59;FS=0.000;MQ=60.00;MQRankSum=0.213;QD=12.20;ReadPosRankSum=0.134;SOR=0.155	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,177,2496
1	2525176	rs72644679	A	C	1681.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.958;DB;DP=32;FS=12.781;MQ=60.00;MQRankSum=-0.900;QD=18.89;ReadPosRankSum=-0.179;SOR=0.021	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1407
1	2526571	rs56305550	G	A	971.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.145;ClippingRankSum=-0.250;DB;DP=86;FS=12.227;MQ=60.00;MQRankSum=0.434;QD=14.94;ReadPosRankSum=2.792;SOR=1.808	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,258,3647
1	2526746	rs3748816	A	G	1951.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.136;ClippingRankSum=-0.608;DB;DP=95;FS=1.165;MQ=60.00;MQRankSum=0.225;QD=20.11;ReadPosRankSum=2.152;SOR=0.578	GT:AD:DP:GQ:PL	0/0:95,0:95:99:0,286,4062
1	2527678	rs2260976	A	G	7851.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;ClippingRankSum=1.316;DB;DP=63;FS=6.129;MQ=60.00;MQRankSum=0.506;QD=29.42;ReadPosRankSum=0.847;SOR=2.032	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2750,190,0
1	2527901	rs149373691	TG	T	1008.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.503;ClippingRankSum=-0.411;DB;DP=35;FS=1.293;MQ=60.13;MQRankSum=0.707;QD=18.00;ReadPosRankSum=-0.670;SOR=1.022	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1373
1	2528133	rs2843401	T	C	8446.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.168;ClippingRankSum=1.594;DB;DP=76;FS=0.000;MQ=60.00;MQRankSum=-0.877;QD=33.25;ReadPosRankSum=-0.219;SOR=0.759	GT:AD:DP:GQ:PL	1/1:0,76:76:99:3254,228,0
1	2530341	rs80303002	A	AG	3457.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.743;ClippingRankSum=-0.470;DB;DP=33;FS=0.000;MQ=60.09;MQRankSum=-0.213;QD=30.06;ReadPosRankSum=0.711;SOR=0.856	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1232,99,0
1	2535613	rs4648562	C	A	1215.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.432;DB;DP=77;FS=0.664;MQ=60.00;MQRankSum=1.366;QD=15.00;ReadPosRankSum=1.273;SOR=0.788	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,231,3326
1	2535758	rs4648652	A	G	645.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.265;ClippingRankSum=-0.118;DB;DP=58;FS=7.188;MQ=60.00;MQRankSum=-0.305;QD=16.54;ReadPosRankSum=-1.000;SOR=0.212	GT:AD:DP:GQ:PL	0/0:57,1:58:99:0,165,2461
1	2537095	rs78506337	G	A	1184.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.334;DB;DP=80;FS=1.855;MQ=60.00;MQRankSum=0.232;QD=15.58;ReadPosRankSum=1.052;SOR=0.466	GT:AD:DP:GQ:PL	0/0:80,0:80:99:0,240,3432
1	2537838	rs41300092	C	T	1532.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.987;ClippingRankSum=-1.482;DB;DP=68;FS=0.000;MQ=60.00;MQRankSum=1.040;QD=23.21;ReadPosRankSum=0.405;SOR=0.523	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,204,2891
1	2538349	rs10797436	G	A	747.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.344;ClippingRankSum=-1.299;DB;DP=52;FS=0.000;MQ=60.00;MQRankSum=-1.294;QD=17.38;ReadPosRankSum=1.706;SOR=0.467	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,2196
1	2541269	rs10797440	A	G	1145.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.924;DB;DP=84;FS=1.597;MQ=60.00;MQRankSum=0.544;QD=15.90;ReadPosRankSum=0.040;SOR=0.490	GT:AD:DP:GQ:PL	0/0:83,1:84:99:0,208,3534
1	2542653	rs10910111	A	G	1083.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.017;ClippingRankSum=-1.346;DB;DP=55;FS=1.778;MQ=60.00;MQRankSum=1.162;QD=17.76;ReadPosRankSum=0.904;SOR=0.472	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,165,2363
1	2560735	rs4648657	A	G	2388.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.009;ClippingRankSum=-0.801;DB;DP=22;FS=1.701;MQ=60.00;MQRankSum=-0.625;QD=31.06;ReadPosRankSum=-1.065;SOR=0.478	GT:AD:DP:GQ:PL	1/1:0,22:22:66:953,66,0
1	2560818	.	CCAG	C	35.09	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.223;DP=35;FS=0.000;MQ=59.79;MQRankSum=0.258;QD=0.82;ReadPosRankSum=0.258;SOR=0.379	GT:AD:DP:GQ:PL	0/1:31,4:35:75:75,0,1280
1	2560882	rs4648658	G	A	3764.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.734;ClippingRankSum=-0.063;DB;DP=34;FS=1.115;MQ=60.00;MQRankSum=0.073;QD=30.89;ReadPosRankSum=-2.037;SOR=0.997	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1490,102,0
1	2560903	rs4648659	T	G	4018.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.599;ClippingRankSum=-1.163;DB;DP=38;FS=4.926;MQ=60.00;MQRankSum=1.374;QD=31.15;ReadPosRankSum=1.319;SOR=0.740	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1711,117,0
1	2564183	rs6698817	T	C	2317.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.016;ClippingRankSum=-1.551;DB;DP=16;FS=0.000;MQ=60.00;MQRankSum=-0.936;QD=30.80;ReadPosRankSum=-0.588;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,16:16:48:698,48,0
1	2564465	rs12752515	T	C	195.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=31.51;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	2573199	rs4648662	A	G	5255.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.433;DB;DP=54;FS=0.000;MQ=60.00;MQRankSum=-0.919;QD=33.26;ReadPosRankSum=0.902;SOR=0.790	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2261,162,0
1	2576908	rs72646028	A	G	1520.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.763;ClippingRankSum=-1.015;DB;DP=73;FS=4.180;MQ=60.00;MQRankSum=0.926;QD=22.03;ReadPosRankSum=0.308;SOR=0.354	GT:AD:DP:GQ:PL	0/0:73,0:73:99:0,219,3105
1	2700117	rs4648502	C	G	1808.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.733;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-1.625;QD=17.07;ReadPosRankSum=1.239;SOR=0.822	GT:AD:DP:GQ:PL	0/1:17,17:34:99:637,0,628
1	2704471	rs12748553	C	T	1385.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.883;DB;DP=23;FS=3.554;MQ=60.00;MQRankSum=-0.908;QD=20.09;ReadPosRankSum=2.353;SOR=2.049	GT:AD:DP:GQ:PL	0/1:9,14:23:99:525,0,289
1	2938265	rs4576609	C	T	3563.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;ClippingRankSum=-0.721;DB;DP=96;FS=1.194;MQ=60.00;MQRankSum=0.303;QD=15.77;ReadPosRankSum=2.996;SOR=0.786	GT:AD:DP:GQ:PL	0/1:55,41:96:99:1503,0,2017
1	2938407	rs4013154	CAGA	C	5441.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.426;ClippingRankSum=0.556;DB;DP=134;FS=2.118;MQ=60.04;MQRankSum=0.469;QD=15.82;ReadPosRankSum=-1.097;SOR=0.861	GT:AD:DP:GQ:PL	0/1:72,62:134:99:2387,0,3347
1	2938569	rs35806103	C	T	8839.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.768;ClippingRankSum=-0.746;DB;DP=204;FS=1.810;MQ=60.00;MQRankSum=-0.261;QD=19.91;ReadPosRankSum=-0.971;SOR=0.838	GT:AD:DP:GQ:PL	0/0:204,0:204:99:0,611,8571
1	2938697	rs3795262	T	G	8510.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.430;DB;DP=212;FS=0.000;MQ=60.00;MQRankSum=0.380;QD=18.22;ReadPosRankSum=0.413;SOR=0.692	GT:AD:DP:GQ:PL	0/1:98,114:212:99:4276,0,3625
1	2938924	rs72629486	T	G	6972.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.554;ClippingRankSum=1.294;DB;DP=204;FS=0.000;MQ=60.00;MQRankSum=0.989;QD=17.17;ReadPosRankSum=0.277;SOR=0.666	GT:AD:DP:GQ:PL	0/0:204,0:204:99:0,613,8719
1	2938989	rs3795263	G	A	3452.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.852;DB;DP=171;FS=2.361;MQ=60.00;MQRankSum=-0.344;QD=20.19;ReadPosRankSum=-0.016;SOR=0.575	GT:AD:DP:GQ:PL	0/1:75,96:171:99:3483,0,2653
1	2983963	rs2297828	G	A	5373.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.937;ClippingRankSum=-0.578;DB;DP=92;FS=11.920;MQ=60.00;MQRankSum=0.705;QD=17.34;ReadPosRankSum=1.114;SOR=0.345	GT:AD:DP:GQ:PL	0/1:45,47:92:99:1750,0,1663
1	3044652	rs35529420	C	T	3101.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.110;ClippingRankSum=-1.133;DB;DP=77;FS=0.000;MQ=60.00;MQRankSum=1.303;QD=16.58;ReadPosRankSum=4.334;SOR=0.673	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,231,3222
1	3044871	rs35951269	T	C	1614.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.096;ClippingRankSum=-1.001;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=1.350;QD=21.52;ReadPosRankSum=1.636;SOR=1.061	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1377
1	3301721	rs2282198	C	T	1443.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;ClippingRankSum=0.501;DB;DP=79;FS=0.000;MQ=60.00;MQRankSum=1.213;QD=18.27;ReadPosRankSum=3.538;SOR=0.487	GT:AD:DP:GQ:PL	0/1:40,39:79:99:1474,0,1450
1	3303158	rs3215936	GA	G	85.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=60.00;QD=21.30;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
1	3310928	rs145881072	C	CCG	1070.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MQ=60.00;QD=31.01;SOR=3.014	GT:AD:DP:GQ:PL	1/1:0,5:5:15:222,15,0
1	3311212	rs2493253	C	G	1076.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MQ=60.00;QD=31.92;SOR=6.518	GT:AD:DP:GQ:PL	1/1:0,6:6:18:265,18,0
1	3311261	rs6702992	C	T	947.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=1.048;DB;DP=8;FS=0.000;MQ=60.00;MQRankSum=-1.119;QD=27.06;ReadPosRankSum=0.124;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,5:8:99:194,0,105
1	3312914	rs871822	T	G	2182.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=-0.074;DB;DP=107;FS=4.882;MQ=60.00;MQRankSum=-1.266;QD=20.39;ReadPosRankSum=1.899;SOR=1.030	GT:AD:DP:GQ:PL	0/1:45,62:107:99:2213,0,1596
1	3312963	rs12726710	C	T	4035.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.515;ClippingRankSum=-1.373;DB;DP=103;FS=0.906;MQ=60.00;MQRankSum=-0.997;QD=18.77;ReadPosRankSum=0.887;SOR=0.764	GT:AD:DP:GQ:PL	0/0:103,0:103:99:0,310,4333
1	3313282	rs7535965	G	A	1738.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=-2.396;DB;DP=26;FS=0.000;MQ=60.00;MQRankSum=-0.721;QD=28.03;ReadPosRankSum=-0.504;SOR=0.850	GT:AD:DP:GQ:PL	0/1:18,8:26:99:226,0,703
1	3319244	rs78946683	G	A	696.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.011;ClippingRankSum=-1.731;DB;DP=48;FS=0.000;MQ=60.00;MQRankSum=0.161;QD=20.47;ReadPosRankSum=1.333;SOR=0.348	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,2053
1	3319601	rs148238606	ACCCTCCTCTGAGTCTTCCTCCCCTTCCCGTG	A	2077.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.773;ClippingRankSum=-1.270;DB;DP=31;FS=4.944;MQ=59.45;MQRankSum=1.197;QD=19.24;ReadPosRankSum=-1.811;SOR=0.200	GT:AD:DP:GQ:PL	1/1:0,31:31:98:1314,98,0
1	3319674	rs12562397	C	T	3631.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.000;MQ=59.03;QD=29.96;SOR=4.255	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1237,84,0
1	3319681	rs12562399	C	G	3448.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.000;MQ=58.97;QD=25.52;SOR=4.147	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1214,81,0
1	3327621	rs3036506	CAT	C	658.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.384;ClippingRankSum=-0.616;DB;DP=15;FS=5.355;MQ=60.22;MQRankSum=0.798;QD=18.80;ReadPosRankSum=1.263;SOR=0.118	GT:AD:DP:GQ:PL	0/0:15,0:15:45:0,45,925
1	3327805	rs57382922	C	T	2791.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=1.457;DB;DP=59;FS=4.266;MQ=60.00;MQRankSum=-0.688;QD=19.94;ReadPosRankSum=0.549;SOR=0.373	GT:AD:DP:GQ:PL	0/1:23,36:59:99:1334,0,830
1	3328358	rs870124	T	C	19395.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;FS=0.000;MQ=60.00;QD=27.88;SOR=1.757	GT:AD:DP:GQ:PL	1/1:0,140:140:99:5980,421,0
1	3328659	rs2493292	C	T	9182.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.313;ClippingRankSum=-1.212;DB;DP=204;FS=0.000;MQ=60.00;MQRankSum=1.059;QD=18.89;ReadPosRankSum=2.333;SOR=0.652	GT:AD:DP:GQ:PL	0/0:204,0:204:99:0,612,8545
1	3329213	rs201904226	G	A	2213.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=-0.045;DB;DP=134;FS=0.000;MQ=60.00;MQRankSum=-0.109;QD=16.52;ReadPosRankSum=1.483;SOR=0.712	GT:AD:DP:GQ:PL	0/1:72,62:134:99:2244,0,2620
1	3329384	rs2493291	C	T	1819.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.190;ClippingRankSum=-2.255;DB;DP=54;FS=4.754;MQ=60.00;MQRankSum=-1.141;QD=16.69;ReadPosRankSum=-0.326;SOR=1.281	GT:AD:DP:GQ:PL	0/0:53,1:54:99:0,117,2154
1	3342109	rs41303861	G	T	2504.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;ClippingRankSum=1.054;DB;DP=52;FS=0.952;MQ=60.00;MQRankSum=-0.847;QD=18.55;ReadPosRankSum=1.214;SOR=0.804	GT:AD:DP:GQ:PL	0/1:27,25:52:99:920,0,966
1	3342530	rs2244013	G	A	1477.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.782;DB;DP=57;FS=4.981;MQ=60.00;MQRankSum=0.486;QD=13.31;ReadPosRankSum=-0.266;SOR=1.206	GT:AD:DP:GQ:PL	0/1:36,21:57:99:719,0,1326
1	3342804	rs870171	G	T	2739.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=-0.303;DB;DP=63;FS=7.565;MQ=60.00;MQRankSum=-1.382;QD=17.67;ReadPosRankSum=-0.726;SOR=1.224	GT:AD:DP:GQ:PL	0/1:36,27:63:99:965,0,1351
1	3350134	rs10752734	T	C	1063.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;ClippingRankSum=1.034;DB;DP=30;FS=0.000;MQ=54.39;MQRankSum=-2.586;QD=12.97;ReadPosRankSum=2.702;SOR=0.470	GT:AD:DP:GQ:PL	0/1:24,6:30:45:45,0,966
1	3383038	rs947351	G	A	952.91	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.909;DB;DP=10;FS=0.000;MQ=60.00;MQRankSum=-1.038;QD=25.75;ReadPosRankSum=-1.680;SOR=0.929	GT:AD:DP:GQ:PL	0/0:10,0:10:30:0,30,393
1	3383593	rs3893316	G	T	1594.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.413;DB;DP=34;FS=3.896;MQ=60.00;MQRankSum=0.171;QD=23.11;ReadPosRankSum=0.594;SOR=0.109	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1427
1	3383665	rs7550948	G	A	2291.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.806;DB;DP=50;FS=17.525;MQ=60.00;MQRankSum=-1.836;QD=25.19;ReadPosRankSum=0.886;SOR=0.046	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2108
1	3383898	rs6424078	A	G	3211.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.565;ClippingRankSum=-0.948;DB;DP=48;FS=11.882;MQ=60.00;MQRankSum=-0.283;QD=30.59;ReadPosRankSum=-0.250;SOR=0.099	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,2097
1	3385250	rs1417897	C	A	1281.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0.586;DB;DP=33;FS=2.221;MQ=60.00;MQRankSum=1.446;QD=15.82;ReadPosRankSum=2.504;SOR=0.218	GT:AD:DP:GQ:PL	0/1:16,17:33:99:628,0,620
1	3385256	rs1891143	A	G	2878.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=-0.241;DB;DP=33;FS=2.061;MQ=60.00;MQRankSum=-0.828;QD=25.03;ReadPosRankSum=-0.032;SOR=1.407	GT:AD:DP:GQ:PL	0/1:18,15:33:99:552,0,739
1	3385330	rs2493249	T	C	7285.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.000;MQ=60.00;QD=34.19;SOR=2.030	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2443,174,0
1	3388406	rs72633372	A	G	685.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.762;ClippingRankSum=0.320;DB;DP=69;FS=3.631;MQ=60.00;MQRankSum=1.079;QD=9.52;ReadPosRankSum=0.241;SOR=0.324	GT:AD:DP:GQ:PL	0/1:48,21:69:99:716,0,1841
1	3389543	rs2245539	T	C	877.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.368;DB;DP=49;FS=5.136;MQ=60.00;MQRankSum=-0.898;QD=17.90;ReadPosRankSum=1.402;SOR=0.039	GT:AD:DP:GQ:PL	0/1:24,25:49:99:908,0,840
1	3389727	rs2185639	C	T	4965.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.527;DB;DP=93;FS=3.267;MQ=60.00;MQRankSum=-0.908;QD=24.95;ReadPosRankSum=3.758;SOR=0.886	GT:AD:DP:GQ:PL	0/0:93,0:93:99:0,279,3928
1	3389885	rs2153709	C	T	1705.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.504;DB;DP=97;FS=13.058;MQ=60.00;MQRankSum=-0.917;QD=17.58;ReadPosRankSum=1.367;SOR=1.605	GT:AD:DP:GQ:PL	0/1:49,48:97:99:1736,0,1835
1	3390238	rs2493323	T	A	9802.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.000;MQ=60.00;QD=32.86;SOR=2.697	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2947,210,0
1	3391175	rs78394810	C	T	980.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.796;ClippingRankSum=-0.159;DB;DP=39;FS=2.834;MQ=60.00;MQRankSum=-0.727;QD=23.34;ReadPosRankSum=1.016;SOR=1.142	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1689
1	3394456	rs4638054	T	C	9714.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.000;MQ=60.00;QD=29.78;SOR=2.864	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2859,201,0
1	3394640	rs4422946	A	G	6113.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=-1.676;DB;DP=84;FS=1.927;MQ=60.00;MQRankSum=-0.555;QD=23.97;ReadPosRankSum=0.921;SOR=0.555	GT:AD:DP:GQ:PL	0/1:45,39:84:99:1362,0,1649
1	3394674	rs4534324	T	C	10446.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.000;MQ=60.00;QD=28.26;SOR=3.584	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3253,226,0
1	3395039	rs10797395	G	A	7965.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.815;ClippingRankSum=0.289;DB;DP=139;FS=0.000;MQ=60.00;MQRankSum=-0.542;QD=28.65;ReadPosRankSum=1.865;SOR=0.714	GT:AD:DP:GQ:PL	0/0:139,0:139:99:0,417,5857
1	3395174	rs61734742	C	A	1102.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.371;DB;DP=54;FS=0.000;MQ=60.00;MQRankSum=1.830;QD=20.41;ReadPosRankSum=3.055;SOR=0.408	GT:AD:DP:GQ:PL	0/1:24,30:54:99:1133,0,837
1	3395229	rs4553117	T	C	6259.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=60.00;QD=28.31;SOR=5.493	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1936,138,0
1	3395973	rs70938094	ACC	A	3118.86	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.594;ClippingRankSum=-2.132;DB;DP=50;FS=10.389;MQ=60.11;MQRankSum=1.241;QD=25.99;ReadPosRankSum=2.036;SOR=0.209	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2105
1	3396609	rs881978	C	T	3563.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.631;ClippingRankSum=-0.387;DB;DP=52;FS=6.872;MQ=59.86;MQRankSum=-0.563;QD=28.97;ReadPosRankSum=0.479;SOR=2.102	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,157,2192
1	3397062	rs56309807	G	A	3235.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.717;ClippingRankSum=-0.251;DB;DP=72;FS=2.986;MQ=60.00;MQRankSum=1.706;QD=18.59;ReadPosRankSum=1.629;SOR=0.831	GT:AD:DP:GQ:PL	0/1:35,37:72:99:1385,0,1278
1	3397188	rs2487677	T	C	6823.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.000;MQ=60.00;QD=31.13;SOR=4.341	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2152,153,0
1	3397564	rs1051517	C	T	181.77	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.361;ClippingRankSum=-0.361;DB;DP=3;FS=3.136;MQ=57.00;MQRankSum=0.361;QD=30.29;ReadPosRankSum=-0.361;SOR=1.872	GT:AD:DP:GQ:PL	0/0:3,0:3:9:0,9,115
1	3412418	rs41315290	G	A	718.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.933;ClippingRankSum=-1.261;DB;DP=38;FS=8.581;MQ=60.00;MQRankSum=0.895;QD=17.95;ReadPosRankSum=1.035;SOR=1.761	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1637
1	3412644	rs41315292	G	A	788.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.628;ClippingRankSum=1.661;DB;DP=30;FS=5.575;MQ=60.00;MQRankSum=0.336;QD=17.51;ReadPosRankSum=1.089;SOR=1.445	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1321
1	3412726	rs72633383	C	T	338.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.490;ClippingRankSum=-0.287;DB;DP=20;FS=0.000;MQ=60.00;MQRankSum=0.361;QD=14.70;ReadPosRankSum=-0.767;SOR=0.772	GT:AD:DP:GQ:PL	0/0:20,0:20:60:0,60,851
1	3412908	rs74050556	G	A	199.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.756;ClippingRankSum=-0.719;DB;DP=21;FS=8.173;MQ=60.00;MQRankSum=-0.719;QD=19.91;ReadPosRankSum=0.350;SOR=2.953	GT:AD:DP:GQ:PL	0/0:21,0:21:63:0,63,888
1	3413868	rs4648506	C	G	1414.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.458;DB;DP=83;FS=0.000;MQ=60.00;MQRankSum=0.553;QD=17.04;ReadPosRankSum=3.080;SOR=0.706	GT:AD:DP:GQ:PL	0/1:42,41:83:99:1445,0,1532
1	3413874	rs202008315	G	A	1197.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.695;DB;DP=78;FS=1.509;MQ=60.00;MQRankSum=-0.162;QD=17.60;ReadPosRankSum=3.374;SOR=0.899	GT:AD:DP:GQ:PL	0/0:78,0:78:99:0,234,3392
1	3416449	rs7553399	C	A	773.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=-0.884;DB;DP=41;FS=9.757;MQ=60.00;MQRankSum=0.054;QD=18.86;ReadPosRankSum=-0.167;SOR=2.078	GT:AD:DP:GQ:PL	0/1:19,22:41:99:804,0,694
1	3416758	rs2794332	A	G	43.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=-1.138;DB;DP=5;FS=0.000;MQ=60.00;MQRankSum=-1.498;QD=8.64;ReadPosRankSum=1.138;SOR=0.321	GT:AD:DP:GQ:PL	0/1:3,2:5:74:74,0,115
1	3417123	rs72633385	G	A	3781.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.449;ClippingRankSum=-0.567;DB;DP=68;FS=14.770;MQ=59.92;MQRankSum=1.147;QD=20.22;ReadPosRankSum=0.819;SOR=0.278	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,210,3017
1	3417131	rs2821031	A	G	1146.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.184;DB;DP=68;FS=7.361;MQ=59.92;MQRankSum=0.403;QD=16.85;ReadPosRankSum=0.730;SOR=1.329	GT:AD:DP:GQ:PL	0/1:35,33:68:99:1177,0,1313
1	3417960	rs4648507	G	A	562.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=-0.705;DB;DP=38;FS=2.322;MQ=60.00;MQRankSum=0.483;QD=14.79;ReadPosRankSum=1.327;SOR=0.421	GT:AD:DP:GQ:PL	0/1:20,18:38:99:593,0,740
1	3418391	rs4648508	C	T	601.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.550;DB;DP=33;FS=9.290;MQ=60.00;MQRankSum=0.123;QD=18.22;ReadPosRankSum=0.161;SOR=0.583	GT:AD:DP:GQ:PL	0/1:15,18:33:99:632,0,554
1	3421586	rs6669870	C	T	4311.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=1.862;DB;DP=41;FS=4.633;MQ=58.86;MQRankSum=0.234;QD=31.93;ReadPosRankSum=0.542;SOR=0.188	GT:AD:DP:GQ:PL	0/1:26,15:41:99:540,0,995
1	3421600	rs146805896	TCAAGGCAACACCGGTAG	T	1230.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.112;ClippingRankSum=1.306;DB;DP=53;FS=1.401;MQ=59.00;MQRankSum=-2.599;QD=11.72;ReadPosRankSum=0.921;SOR=0.927	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,158,2735
1	3421658	rs2821009	A	T	5395.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=-1.511;DB;DP=64;FS=0.000;MQ=58.85;MQRankSum=-0.047;QD=31.55;ReadPosRankSum=-0.355;SOR=0.927	GT:AD:DP:GQ:PL	0/1:34,30:64:99:1065,0,1199
1	3421897	rs2821008	A	G	3821.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=-0.113;DB;DP=88;FS=0.464;MQ=60.00;MQRankSum=0.278;QD=19.11;ReadPosRankSum=0.400;SOR=0.656	GT:AD:DP:GQ:PL	0/1:41,47:88:99:1754,0,1528
1	3424388	rs947345	G	A	5286.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;ClippingRankSum=0.036;DB;DP=133;FS=2.715;MQ=60.00;MQRankSum=0.138;QD=16.12;ReadPosRankSum=-0.300;SOR=0.516	GT:AD:DP:GQ:PL	0/1:74,59:133:99:2045,0,2723
1	3428160	rs2820999	T	G	9497.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;ClippingRankSum=-0.847;DB;DP=79;FS=1.619;MQ=60.00;MQRankSum=0.965;QD=32.56;ReadPosRankSum=-0.162;SOR=0.517	GT:AD:DP:GQ:PL	0/1:40,39:79:99:1453,0,1490
1	3428424	rs4648391	G	T	8230.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=1.012;DB;DP=66;FS=4.324;MQ=60.00;MQRankSum=-0.304;QD=30.86;ReadPosRankSum=-1.572;SOR=1.244	GT:AD:DP:GQ:PL	0/1:30,36:66:99:1454,0,2451
1	3428428	rs4648514	C	T	8069.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=-2.299;DB;DP=69;FS=6.909;MQ=60.00;MQRankSum=-1.141;QD=26.75;ReadPosRankSum=0.895;SOR=1.374	GT:AD:DP:GQ:PL	0/1:32,37:69:99:1451,0,2483
1	3428608	rs11585362	G	A	8501.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=-1.023;DB;DP=68;FS=1.696;MQ=60.00;MQRankSum=1.126;QD=30.97;ReadPosRankSum=-0.020;SOR=0.944	GT:AD:DP:GQ:PL	0/1:35,33:68:99:1211,0,1258
1	3432278	rs12045137	C	G	3275.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=-0.925;DB;DP=18;FS=0.000;MQ=60.00;MQRankSum=-1.055;QD=30.76;ReadPosRankSum=-0.028;SOR=1.039	GT:AD:DP:GQ:PL	0/1:5,13:18:99:471,0,170
1	3440647	rs2794322	T	C	5804.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.000;MQ=60.00;QD=28.39;SOR=3.562	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1438,99,0
1	3440824	rs10797399	G	A	856.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=1.528;DB;DP=57;FS=0.000;MQ=60.00;MQRankSum=-0.443;QD=14.76;ReadPosRankSum=3.200;SOR=0.738	GT:AD:DP:GQ:PL	0/1:33,24:57:99:887,0,1286
1	3440943	rs12049449	A	C	3637.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=-1.184;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=-0.546;QD=33.68;ReadPosRankSum=0.799;SOR=2.100	GT:AD:DP:GQ:PL	0/1:16,15:31:99:527,0,534
1	3496328	rs2821051	T	C	5072.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.000;MQ=60.00;QD=27.88;SOR=6.718	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1580,111,0
1	3496479	rs2794340	T	C	8932.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.000;MQ=60.00;QD=25.55;SOR=0.750	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2715,194,0
1	3511934	rs7513275	A	G	4104.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.195;ClippingRankSum=-0.924;DB;DP=83;FS=0.592;MQ=60.00;MQRankSum=-0.078;QD=19.09;ReadPosRankSum=-1.058;SOR=0.744	GT:AD:DP:GQ:PL	0/1:47,36:83:99:1317,0,1695
1	3518857	rs2821014	A	C	1941.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.000;MQ=60.00;QD=33.33;SOR=7.743	GT:AD:DP:GQ:PL	1/1:0,20:20:60:828,60,0
1	3518944	rs7521546	T	C	3472.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MQ=60.00;QD=23.31;SOR=3.584	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1003,69,0
1	3527944	rs10797402	C	G	3788.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MQ=60.00;QD=21.73;SOR=2.732	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1232,87,0
1	3528082	rs10797403	T	C	2887.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.000;MQ=60.00;QD=32.73;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,21:21:63:922,63,0
1	3545175	rs58849058	GTTCTGGGAGCTCCTCCCCC	G	3715.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=57.54;QD=31.76;SOR=8.862	GT:AD:DP:GQ:PL	1/1:0,22:22:69:994,69,0
1	3548136	rs2760321	T	C	9911.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.000;MQ=60.00;QD=29.83;SOR=0.710	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2731,195,0
1	3548832	rs2760320	G	C	3167.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.623;ClippingRankSum=-1.615;DB;DP=88;FS=1.555;MQ=60.00;MQRankSum=-0.741;QD=16.67;ReadPosRankSum=0.998;SOR=0.571	GT:AD:DP:GQ:PL	0/0:88,0:88:99:0,264,3758
1	3563512	rs34514629	GC	G	3170.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.432;DB;DP=46;FS=4.578;MQ=60.25;MQRankSum=0.633;QD=24.02;ReadPosRankSum=-0.259;SOR=2.728	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1855,138,0
1	3566625	rs145464993	AGCAGGCTG	A	2032.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.585;DB;DP=20;FS=4.678;MQ=60.00;MQRankSum=-0.687;QD=25.40;ReadPosRankSum=1.329;SOR=1.508	GT:AD:DP:GQ:PL	1/1:0,20:20:60:900,60,0
1	3566706	rs2251098	G	A	1933.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.642;ClippingRankSum=0.827;DB;DP=29;FS=0.000;MQ=60.00;MQRankSum=0.441;QD=27.23;ReadPosRankSum=-1.136;SOR=1.745	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1255,87,0
1	3607520	rs3765730	G	A	4926.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.187;DB;DP=106;FS=3.987;MQ=60.00;MQRankSum=0.947;QD=15.40;ReadPosRankSum=1.787;SOR=0.929	GT:AD:DP:GQ:PL	0/1:60,46:106:99:1643,0,2285
1	3638674	rs1801174	C	T	18031.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;FS=0.000;MQ=60.00;QD=28.08;SOR=1.023	GT:AD:DP:GQ:PL	1/1:0,115:115:99:4721,343,0
1	3638834	rs12737840	C	T	2043.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.964;ClippingRankSum=-0.634;DB;DP=94;FS=0.000;MQ=60.00;MQRankSum=0.842;QD=14.39;ReadPosRankSum=2.232;SOR=0.722	GT:AD:DP:GQ:PL	0/0:94,0:94:99:0,282,4022
1	3640085	rs6424091	C	G	2003.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.000;MQ=61.19;QD=31.00;SOR=5.709	GT:AD:DP:GQ:PL	1/1:0,18:18:53:663,53,0
1	3640134	rs59901813	TCTGC	T	4120.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=60.68;QD=26.97;SOR=9.087	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1374,93,0
1	3644085	rs10910017	G	A	629.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=-0.707;DB;DP=39;FS=2.765;MQ=60.00;MQRankSum=-1.335;QD=16.13;ReadPosRankSum=0.566;SOR=1.076	GT:AD:DP:GQ:PL	0/1:21,18:39:99:660,0,793
1	3644349	rs2181486	A	G	6473.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.000;MQ=60.00;QD=30.37;SOR=4.091	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1735,122,0
1	3644374	rs2146657	A	G	4947.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.000;MQ=60.00;QD=29.47;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1388,99,0
1	3644669	rs2236367	C	T	2448.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.633;DB;DP=45;FS=16.004;MQ=60.00;MQRankSum=0.134;QD=19.91;ReadPosRankSum=1.014;SOR=0.097	GT:AD:DP:GQ:PL	0/1:19,26:45:99:983,0,702
1	3644805	rs2236366	A	G	4348.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;ClippingRankSum=-0.008;DB;DP=73;FS=6.933;MQ=60.00;MQRankSum=-1.232;QD=16.86;ReadPosRankSum=1.025;SOR=0.417	GT:AD:DP:GQ:PL	0/1:38,35:73:99:1280,0,1369
1	3644858	rs2236365	G	C	2853.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.447;DB;DP=59;FS=4.941;MQ=60.00;MQRankSum=-2.023;QD=16.31;ReadPosRankSum=0.070;SOR=1.115	GT:AD:DP:GQ:PL	0/1:29,30:59:99:1099,0,1082
1	3645835	rs2254530	C	A	2841.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=1.285;DB;DP=49;FS=5.003;MQ=60.00;MQRankSum=0.710;QD=22.03;ReadPosRankSum=1.946;SOR=2.117	GT:AD:DP:GQ:PL	0/1:18,31:49:99:1234,0,1354
1	3645844	rs2096224	G	A	3108.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.825;DB;DP=51;FS=5.055;MQ=60.00;MQRankSum=0.235;QD=22.86;ReadPosRankSum=1.423;SOR=2.170	GT:AD:DP:GQ:PL	0/1:19,32:51:99:1315,0,1313
1	3646137	rs11589885	C	T	5514.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=-0.353;DB;DP=76;FS=0.000;MQ=60.00;MQRankSum=0.050;QD=18.63;ReadPosRankSum=2.046;SOR=0.676	GT:AD:DP:GQ:PL	0/1:30,46:76:99:1679,0,1053
1	3646192	rs1885867	G	A	13596.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;FS=0.000;MQ=60.00;QD=29.61;SOR=0.983	GT:AD:DP:GQ:PL	1/1:0,89:89:99:4054,274,0
1	3646214	rs1885866	T	C	13018.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;FS=0.000;MQ=60.00;QD=38.10;SOR=1.104	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3863,262,0
1	3646291	rs1885865	G	A	10959.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.000;MQ=60.00;QD=31.96;SOR=1.224	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2924,204,0
1	3647962	rs1745813	T	C	2292.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=1.132;DB;DP=42;FS=2.263;MQ=60.00;MQRankSum=0.050;QD=16.62;ReadPosRankSum=1.856;SOR=0.499	GT:AD:DP:GQ:PL	0/1:23,19:42:99:664,0,848
1	3652822	rs9800	C	G	89.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=29.85;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,1:1:3:31,3,0
1	3659657	rs2298222	G	A	2987.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.014;ClippingRankSum=1.095;DB;DP=79;FS=0.000;MQ=60.00;MQRankSum=1.029;QD=17.57;ReadPosRankSum=0.038;SOR=0.724	GT:AD:DP:GQ:PL	0/0:79,0:79:99:0,237,3365
1	3662845	rs3737589	A	G	7336.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.120;DB;DP=54;FS=3.118;MQ=60.00;MQRankSum=1.055;QD=26.93;ReadPosRankSum=-0.204;SOR=0.444	GT:AD:DP:GQ:PL	0/1:31,23:54:99:814,0,1162
1	3669172	rs41315312	C	T	6220.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;ClippingRankSum=1.232;DB;DP=160;FS=0.541;MQ=60.00;MQRankSum=0.580;QD=13.18;ReadPosRankSum=1.213;SOR=0.773	GT:AD:DP:GQ:PL	0/1:105,55:160:99:1838,0,4099
1	3669201	rs10797410	A	G	14290.13	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.847;ClippingRankSum=-0.064;DB;DP=135;FS=1.456;MQ=60.00;MQRankSum=0.139;QD=34.77;ReadPosRankSum=-0.586;SOR=0.909	GT:AD:DP:GQ:PL	0/1:86,49:135:99:1787,0,6495
1	3669205	rs10910021	C	G	14594.13	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=-1.137;DB;DP=133;FS=2.351;MQ=60.00;MQRankSum=-0.196;QD=34.91;ReadPosRankSum=1.605;SOR=0.932	GT:AD:DP:GQ:PL	0/1:86,47:133:99:1780,0,6563
1	3672156	rs4648555	C	A	3126.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.634;ClippingRankSum=1.577;DB;DP=62;FS=0.000;MQ=60.00;MQRankSum=-0.632;QD=18.50;ReadPosRankSum=1.040;SOR=0.473	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,187,2698
1	3673496	rs4648405	T	G	1713.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.203;ClippingRankSum=-0.499;DB;DP=30;FS=0.000;MQ=60.00;MQRankSum=0.703;QD=18.42;ReadPosRankSum=1.173;SOR=0.310	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1291
1	3677933	rs1181883	T	C	5751.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=-1.404;DB;DP=54;FS=6.304;MQ=60.00;MQRankSum=0.700;QD=25.60;ReadPosRankSum=1.359;SOR=1.443	GT:AD:DP:GQ:PL	0/1:25,29:54:99:1081,0,895
1	3679139	rs1181879	T	C	2600.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=-0.166;DB;DP=18;FS=2.759;MQ=60.00;MQRankSum=0.369;QD=34.67;ReadPosRankSum=0.238;SOR=0.744	GT:AD:DP:GQ:PL	0/1:12,6:18:99:202,0,466
1	3679146	rs4648556	G	A	1052.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.524;ClippingRankSum=-2.042;DB;DP=19;FS=3.192;MQ=60.00;MQRankSum=-0.823;QD=18.46;ReadPosRankSum=0.096;SOR=0.760	GT:AD:DP:GQ:PL	0/0:19,0:19:57:0,57,1296
1	3679307	rs4648557	T	C	292.26	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.694;ClippingRankSum=-0.797;DB;DP=6;FS=0.000;MQ=60.00;MQRankSum=-0.026;QD=13.92;ReadPosRankSum=-0.129;SOR=0.223	GT:AD:DP:GQ:PL	0/0:6,0:6:18:0,18,231
1	3679775	rs10910024	C	T	2090.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.341;DB;DP=43;FS=5.071;MQ=60.00;MQRankSum=-0.141;QD=19.00;ReadPosRankSum=1.853;SOR=1.149	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1816
1	3680056	rs56079032	G	A	1758.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.314;DB;DP=47;FS=14.946;MQ=60.00;MQRankSum=0.232;QD=18.90;ReadPosRankSum=3.258;SOR=0.737	GT:AD:DP:GQ:PL	0/1:23,24:47:99:838,0,810
1	3683690	rs1181873	A	C	3585.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.738;ClippingRankSum=-1.671;DB;DP=58;FS=6.701;MQ=60.00;MQRankSum=0.856;QD=27.80;ReadPosRankSum=0.733;SOR=2.224	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,174,2474
1	3684107	rs1181872	T	A	1726.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.482;ClippingRankSum=1.342;DB;DP=35;FS=6.941;MQ=60.00;MQRankSum=-0.407;QD=28.78;ReadPosRankSum=0.400;SOR=0.067	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,104,1423
1	3691727	rs1175549	A	C	1285.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.577;ClippingRankSum=-0.911;DB;DP=21;FS=2.124;MQ=60.00;MQRankSum=0.962;QD=28.58;ReadPosRankSum=0.987;SOR=0.199	GT:AD:DP:GQ:PL	0/0:21,0:21:63:0,63,925
1	3696890	rs8379	A	C	106.42	PASS	AC=0;AF=0.00;AN=0;DB;DP=3;FS=0.000;MQ=60.00;QD=35.17;SOR=1.179	GT	./.
1	3701491	rs2996426	A	G	2313.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.958;ClippingRankSum=-0.282;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=-0.584;QD=27.55;ReadPosRankSum=-0.190;SOR=0.536	GT:AD:DP:GQ:PL	0/0:37,1:38:70:0,70,1494
1	3703337	rs2368537	G	C	2672.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=1.025;DB;DP=36;FS=2.246;MQ=60.00;MQRankSum=0.829;QD=23.65;ReadPosRankSum=2.053;SOR=1.132	GT:AD:DP:GQ:PL	0/1:22,14:36:99:482,0,809
1	3703710	rs2253143	G	A	5218.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.469;ClippingRankSum=-0.040;DB;DP=92;FS=0.000;MQ=60.00;MQRankSum=0.715;QD=20.46;ReadPosRankSum=1.189;SOR=0.703	GT:AD:DP:GQ:PL	0/0:91,1:92:99:0,266,3909
1	3704041	rs7527973	C	T	378.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.528;DB;DP=37;FS=0.000;MQ=60.00;MQRankSum=0.436;QD=15.13;ReadPosRankSum=1.349;SOR=0.061	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,110,1532
1	3732103	rs4648409	T	C	1782.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.131;DB;DP=91;FS=5.371;MQ=60.00;MQRankSum=0.026;QD=18.56;ReadPosRankSum=0.486;SOR=1.164	GT:AD:DP:GQ:PL	0/0:91,0:91:99:0,273,3905
1	3732172	rs4233019	C	T	1450.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.406;DB;DP=75;FS=7.798;MQ=60.00;MQRankSum=-0.042;QD=20.42;ReadPosRankSum=1.981;SOR=0.104	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,225,3217
1	3732596	rs6662706	G	T	558.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.437;ClippingRankSum=-1.272;DB;DP=24;FS=6.842;MQ=60.00;MQRankSum=0.252;QD=17.44;ReadPosRankSum=1.344;SOR=0.071	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,1042
1	3732639	rs6702916	T	A	672.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.198;ClippingRankSum=-1.228;DB;DP=26;FS=3.800;MQ=60.00;MQRankSum=-0.074;QD=15.63;ReadPosRankSum=0.771;SOR=0.214	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,1120
1	3732707	rs6702935	T	C	620.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0.718;DB;DP=31;FS=2.272;MQ=60.00;MQRankSum=-0.458;QD=13.19;ReadPosRankSum=-0.127;SOR=0.369	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1302
1	3732782	rs6703035	T	C	912.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.512;ClippingRankSum=-0.708;DB;DP=52;FS=2.979;MQ=60.00;MQRankSum=0.290;QD=17.88;ReadPosRankSum=0.118;SOR=0.387	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,157,2270
1	3743109	rs2275834	A	G	2606.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.031;DB;DP=146;FS=0.000;MQ=60.00;MQRankSum=-0.720;QD=17.85;ReadPosRankSum=-0.390;SOR=0.571	GT:AD:DP:GQ:PL	0/0:146,0:146:99:0,457,10921
1	3743132	rs4648344	T	C	2173.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.343;ClippingRankSum=-0.681;DB;DP=133;FS=3.421;MQ=60.00;MQRankSum=-0.992;QD=16.22;ReadPosRankSum=0.538;SOR=1.099	GT:AD:DP:GQ:PL	0/0:133,0:133:99:0,400,10167
1	3743391	rs6688969	C	T	2279.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.650;ClippingRankSum=-0.105;DB;DP=123;FS=2.353;MQ=60.00;MQRankSum=0.146;QD=17.27;ReadPosRankSum=1.420;SOR=0.924	GT:AD:DP:GQ:PL	0/0:123,0:123:99:0,370,5280
1	3743433	rs5772126	T	TG	1106.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.562;ClippingRankSum=-0.680;DB;DP=86;FS=3.209;MQ=60.00;MQRankSum=0.443;QD=13.01;ReadPosRankSum=-0.740;SOR=1.164	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,259,3068
1	3745721	rs2275833	C	T	808.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.735;ClippingRankSum=-0.405;DB;DP=44;FS=0.000;MQ=60.00;MQRankSum=-0.285;QD=15.54;ReadPosRankSum=0.140;SOR=0.516	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1876
1	3745787	rs2275832	T	C	1843.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.558;ClippingRankSum=1.489;DB;DP=75;FS=1.488;MQ=60.00;MQRankSum=-0.553;QD=20.03;ReadPosRankSum=0.831;SOR=0.861	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,224,3156
1	3746254	rs2275830	T	C	5006.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.000;MQ=60.00;QD=30.83;SOR=5.049	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1426,99,0
1	3746583	rs2275828	G	T	7679.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.644;DB;DP=64;FS=0.000;MQ=60.00;MQRankSum=-0.490;QD=32.23;ReadPosRankSum=0.252;SOR=0.720	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2829,193,0
1	3746585	rs2275827	T	G	1045.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.773;DB;DP=62;FS=0.000;MQ=60.00;MQRankSum=0.643;QD=19.00;ReadPosRankSum=0.086;SOR=0.605	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,193,2856
1	3746589	rs2275826	C	G	8993.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.000;MQ=60.00;QD=32.15;SOR=4.750	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2763,187,0
1	3747580	rs6424058	C	T	2790.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.610;ClippingRankSum=-0.801;DB;DP=22;FS=0.000;MQ=60.00;MQRankSum=-1.720;QD=30.04;ReadPosRankSum=0.420;SOR=3.884	GT:AD:DP:GQ:PL	1/1:0,22:22:66:938,66,0
1	3747603	rs6413779	T	C	4114.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.000;MQ=60.00;QD=30.62;SOR=9.190	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1020,72,0
1	3752868	.	CAAA	C,CA	1092.93	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=1.578;DP=9;FS=0.000;MQ=60.00;MQRankSum=0.302;QD=22.30;ReadPosRankSum=-1.646;SOR=4.977	GT:AD:DP:GQ:PL	1/2:1,2,6:9:13:224,107,151,13,0,17
1	3753032	.	G	GT	216.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.408;DP=6;FS=0.000;MQ=60.00;MQRankSum=0.462;QD=2.28;ReadPosRankSum=-1.333;SOR=0.616	GT:AD:DP:GQ:PL	1/1:0,6:6:17:104,17,0
1	3753136	rs2275824	A	T	8129.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.021;DB;DP=70;FS=18.810;MQ=60.00;MQRankSum=0.469;QD=34.01;ReadPosRankSum=-0.099;SOR=0.808	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2777,210,0
1	3755675	rs1891941	T	C	16116.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;FS=0.000;MQ=60.00;QD=33.46;SOR=1.654	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3802,270,0
1	3756120	rs1539649	A	G	7716.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.068;ClippingRankSum=1.972;DB;DP=64;FS=1.002;MQ=60.00;MQRankSum=0.967;QD=34.76;ReadPosRankSum=-0.543;SOR=0.550	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2660,192,0
1	3759784	rs10797347	A	G	6302.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=60.00;QD=32.29;SOR=2.772	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1307,93,0
1	3759889	.	T	TA	933.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=1.888;DP=15;FS=0.000;MQ=60.17;MQRankSum=0.341;QD=8.72;ReadPosRankSum=-0.393;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,13:15:3:277,0,3
1	3759937	rs10909801	A	G	1540.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.785;ClippingRankSum=-0.897;DB;DP=8;FS=0.000;MQ=60.21;MQRankSum=-0.311;QD=26.55;ReadPosRankSum=-1.199;SOR=0.898	GT:AD:DP:GQ:PL	1/1:0,8:8:24:336,24,0
1	3759940	.	A	AT	180.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=-0.531;DP=4;FS=3.854;MQ=60.22;MQRankSum=-0.449;QD=5.63;ReadPosRankSum=-1.755;SOR=0.155	GT:AD:DP:GQ:PL	0/1:2,2:4:9:29,0,9
1	3761479	rs2275822	C	T	6856.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.065;ClippingRankSum=1.353;DB;DP=58;FS=2.875;MQ=60.00;MQRankSum=1.484;QD=33.61;ReadPosRankSum=3.672;SOR=0.415	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2476,174,0
1	3761650	rs2275821	A	G	8206.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MQ=60.00;QD=29.08;SOR=1.041	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2353,163,0
1	3761772	rs7538067	C	T	1172.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.780;ClippingRankSum=-0.824;DB;DP=54;FS=4.028;MQ=60.00;MQRankSum=-0.107;QD=19.22;ReadPosRankSum=-0.425;SOR=0.381	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,2312
1	3764216	rs10492942	C	T	975.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.409;ClippingRankSum=-0.685;DB;DP=66;FS=0.870;MQ=60.00;MQRankSum=-0.336;QD=13.00;ReadPosRankSum=2.840;SOR=0.836	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,199,2884
1	3765095	.	C	CAAAAA	1491.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.202;ClippingRankSum=0.116;DP=9;FS=0.000;MQ=58.98;MQRankSum=-0.116;QD=24.05;ReadPosRankSum=-0.406;SOR=0.540	GT:AD:DP:GQ:PL	1/1:0,9:9:41:505,41,0
1	3773588	rs7542369	C	G	64.88	PASS	AC=0;AF=0.00;AN=0;DB;DP=2;FS=0.000;MQ=60.00;QD=32.44;SOR=2.303	GT	./.
1	3775454	rs4376673	C	G	7418.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MQ=60.00;QD=33.43;SOR=3.598	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2085,144,0
1	3782115	rs12127483	G	A	614.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.567;ClippingRankSum=-0.413;DB;DP=31;FS=5.617;MQ=60.00;MQRankSum=1.103;QD=19.19;ReadPosRankSum=2.564;SOR=0.187	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1349
1	3782608	rs10909809	C	T	9815.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.000;MQ=60.00;QD=35.41;SOR=1.569	GT:AD:DP:GQ:PL	1/1:0,72:72:99:3038,216,0
1	3786189	rs1141070	G	A	1275.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=-1.450;DB;DP=58;FS=1.084;MQ=60.00;MQRankSum=0.293;QD=21.99;ReadPosRankSum=1.764;SOR=0.445	GT:AD:DP:GQ:PL	0/1:23,35:58:99:1306,0,841
1	3786612	rs5013486	C	T	329.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=-1.170;DB;DP=24;FS=0.000;MQ=60.00;MQRankSum=1.131;QD=13.71;ReadPosRankSum=1.745;SOR=0.232	GT:AD:DP:GQ:PL	0/1:13,11:24:99:360,0,486
1	3788968	rs111645751	G	A	920.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.434;ClippingRankSum=1.935;DB;DP=47;FS=8.635;MQ=60.00;MQRankSum=0.074;QD=19.58;ReadPosRankSum=2.238;SOR=2.446	GT:AD:DP:GQ:PL	0/1:21,26:47:99:951,0,708
1	3789194	.	G	GCGGCCC	2409.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=-0.128;DP=98;FS=0.000;MQ=61.25;MQRankSum=6.930;QD=24.33;ReadPosRankSum=-4.742;SOR=0.616	GT:AD:DP:GQ:PL	0/1:45,53:98:99:2449,0,5385
1	3789195	.	T	TGTCCCTGCCGC	2409.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167;ClippingRankSum=1.189;DP=99;FS=1.462;MQ=61.15;MQRankSum=6.697;QD=24.09;ReadPosRankSum=-5.099;SOR=0.545	GT:AD:DP:GQ:PL	0/1:45,54:99:99:2449,0,5385
1	3789662	rs11581471	A	G	4505.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.257;ClippingRankSum=-0.767;DB;DP=40;FS=5.018;MQ=60.00;MQRankSum=-0.549;QD=33.62;ReadPosRankSum=-0.496;SOR=3.190	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1684,119,0
1	3800242	rs3205087	A	G	12633.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;ClippingRankSum=-0.772;DB;DP=100;FS=1.759;MQ=60.00;MQRankSum=-0.065;QD=34.71;ReadPosRankSum=2.100;SOR=0.568	GT:AD:DP:GQ:PL	1/1:1,99:100:99:4173,255,0
1	3806643	rs4520357	T	A	4237.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=-0.323;DB;DP=51;FS=11.158;MQ=60.00;MQRankSum=-0.345;QD=26.48;ReadPosRankSum=0.464;SOR=0.180	GT:AD:DP:GQ:PL	0/1:27,24:51:99:854,0,1018
1	3807593	rs4274008	G	C	14456.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;FS=0.000;MQ=60.00;QD=29.06;SOR=1.206	GT:AD:DP:GQ:PL	1/1:0,95:95:99:4019,286,0
1	3809423	rs11807227	G	A	9904.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.707;ClippingRankSum=-0.139;DB;DP=118;FS=7.436;MQ=59.85;MQRankSum=0.828;QD=26.99;ReadPosRankSum=-0.126;SOR=1.041	GT:AD:DP:GQ:PL	0/1:63,55:118:99:2026,0,2340
1	3816508	rs35131135	T	C	1355.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.238;DB;DP=19;FS=6.917;MQ=60.00;MQRankSum=0.382;QD=26.57;ReadPosRankSum=-0.114;SOR=2.765	GT:AD:DP:GQ:PL	0/1:9,10:19:99:375,0,299
1	3816854	rs61770363	G	A	2173.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=-0.668;DB;DP=24;FS=2.740;MQ=59.30;MQRankSum=-0.745;QD=27.86;ReadPosRankSum=1.797;SOR=0.348	GT:AD:DP:GQ:PL	0/1:9,15:24:99:578,0,297
1	4715401	.	C	A	4580.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.999;ClippingRankSum=1.304;DP=117;FS=5.679;MQ=60.00;MQRankSum=0.239;QD=17.35;ReadPosRankSum=1.278;SOR=0.112	GT:AD:DP:GQ:PL	0/0:117,0:117:99:0,351,4946
1	4772053	rs1061968	T	C	8544.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=-1.408;DB;DP=113;FS=0.418;MQ=60.00;MQRankSum=0.158;QD=25.58;ReadPosRankSum=-0.594;SOR=0.669	GT:AD:DP:GQ:PL	0/1:59,54:113:99:1993,0,2210
1	4772717	rs242056	G	A	10668.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.664;DB;DP=91;FS=0.000;MQ=60.00;MQRankSum=-0.153;QD=34.52;ReadPosRankSum=0.104;SOR=0.657	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3812,273,0
1	4829795	rs3950181	C	T	576.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.440;ClippingRankSum=1.400;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=0.750;QD=19.87;ReadPosRankSum=1.099;SOR=0.027	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1693
1	4834606	rs389959	T	C	4468.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.013;DB;DP=112;FS=10.762;MQ=60.00;MQRankSum=-0.873;QD=17.32;ReadPosRankSum=1.650;SOR=0.371	GT:AD:DP:GQ:PL	0/0:112,0:112:99:0,336,4622
1	4847845	rs4654460	G	A	9470.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.992;ClippingRankSum=0.459;DB;DP=127;FS=2.499;MQ=60.00;MQRankSum=-2.222;QD=28.53;ReadPosRankSum=2.236;SOR=0.522	GT:AD:DP:GQ:PL	0/0:127,0:127:99:0,382,5417
1	5623965	rs9439613	C	T	7148.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=-0.384;DB;DP=65;FS=0.000;MQ=60.00;MQRankSum=0.070;QD=34.04;ReadPosRankSum=-1.146;SOR=0.748	GT:AD:DP:GQ:PL	0/1:35,30:65:99:1085,0,1339
1	5716287	.	GA	G	267.39	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.817;ClippingRankSum=-0.746;DP=5;FS=6.410;MQ=61.02;MQRankSum=1.102;QD=16.71;ReadPosRankSum=-0.178;SOR=2.833	GT:AD:DP:GQ:PL	0/0:5,0:5:18:0,18,212
1	5716487	rs76178789	T	C	70.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;ClippingRankSum=0.886;DB;DP=10;FS=5.213;MQ=54.16;MQRankSum=-3.518;QD=2.27;ReadPosRankSum=2.551;SOR=0.036	GT:AD:DP:GQ:PL	0/1:8,2:10:45:45,0,311
1	5873771	rs55759711	A	G	1823.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.803;ClippingRankSum=1.107;DB;DP=17;FS=6.442;MQ=60.00;MQRankSum=-1.004;QD=30.90;ReadPosRankSum=0.567;SOR=0.136	GT:AD:DP:GQ:PL	1/1:0,17:17:51:681,51,0
1	5923788	rs11121648	T	G	2103.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.604;DB;DP=31;FS=11.294;MQ=60.00;MQRankSum=0.353;QD=29.22;ReadPosRankSum=0.353;SOR=0.148	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1335
1	5934490	rs868163	A	G	10494.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.683;DB;DP=95;FS=3.741;MQ=60.00;MQRankSum=0.635;QD=31.42;ReadPosRankSum=-0.434;SOR=1.034	GT:AD:DP:GQ:PL	0/1:55,40:95:99:1356,0,2116
1	5934837	rs1287638	C	T	7621.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.668;DB;DP=54;FS=1.892;MQ=59.90;MQRankSum=1.910;QD=34.49;ReadPosRankSum=1.245;SOR=0.508	GT:AD:DP:GQ:PL	0/1:27,27:54:99:939,0,990
1	5935162	rs1287637	A	T	9103.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MQ=60.00;QD=28.79;SOR=2.663	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2167,151,0
1	5935222	rs963030	T	C	5557.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=1.457;DB;DP=33;FS=9.216;MQ=60.00;MQRankSum=-0.542;QD=28.12;ReadPosRankSum=0.842;SOR=3.391	GT:AD:DP:GQ:PL	0/1:11,22:33:99:876,0,379
1	5937091	rs1622955	T	C	4381.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MQ=60.00;QD=34.20;SOR=2.746	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1183,87,0
1	5937168	rs3747992	G	A	1199.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=1.383;DB;DP=54;FS=2.611;MQ=60.00;MQRankSum=1.234;QD=22.21;ReadPosRankSum=-0.701;SOR=0.942	GT:AD:DP:GQ:PL	0/1:21,33:54:99:1230,0,732
1	5937391	rs3747989	C	T	8278.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;FS=0.000;MQ=60.00;QD=34.19;SOR=1.525	GT:AD:DP:GQ:PL	1/1:0,71:71:99:3101,213,0
1	5937413	rs3747988	A	C	1331.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.793;ClippingRankSum=0.786;DB;DP=64;FS=8.852;MQ=60.00;MQRankSum=-0.002;QD=20.17;ReadPosRankSum=-1.139;SOR=0.230	GT:AD:DP:GQ:PL	0/1:28,36:64:99:1362,0,994
1	5939544	rs11121915	T	G	16328.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;FS=0.000;MQ=60.00;QD=29.35;SOR=0.938	GT:AD:DP:GQ:PL	1/1:0,109:109:99:4584,327,0
1	5948677	rs2282281	G	A	7616.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.000;MQ=60.00;QD=27.50;SOR=0.715	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2454,174,0
1	5964991	rs3737234	T	C	13090.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;FS=0.000;MQ=60.00;QD=27.62;SOR=6.098	GT:AD:DP:GQ:PL	1/1:0,97:97:99:4130,292,0
1	6027167	rs875574	C	A	4426.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.000;MQ=60.00;QD=32.89;SOR=3.217	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1464,107,0
1	6027252	rs875573	A	G	8614.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;ClippingRankSum=-1.046;DB;DP=69;FS=0.000;MQ=60.00;MQRankSum=-0.126;QD=30.46;ReadPosRankSum=-0.628;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2947,208,0
1	6029086	.	CA	C	2533.99	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.905;ClippingRankSum=1.178;DP=36;FS=8.461;MQ=60.07;MQRankSum=-0.033;QD=17.12;ReadPosRankSum=1.040;SOR=2.505	GT:AD:DP:GQ:PL	1/1:2,34:36:71:772,71,0
1	6038583	rs4908639	G	C	7003.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MQ=59.94;QD=33.26;SOR=8.920	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2013,148,0
1	6111721	rs202153711	C	T	865.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.674;DB;DP=20;FS=1.029;MQ=60.00;MQRankSum=1.095;QD=16.64;ReadPosRankSum=1.835;SOR=0.484	GT:AD:DP:GQ:PL	0/1:12,8:20:99:274,0,465
1	6111757	rs11589347	G	A	957.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.592;ClippingRankSum=1.348;DB;DP=15;FS=1.189;MQ=60.00;MQRankSum=0.350;QD=20.37;ReadPosRankSum=-1.077;SOR=0.999	GT:AD:DP:GQ:PL	0/0:15,0:15:45:0,45,662
1	6142308	rs2227911	T	C	2707.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.685;ClippingRankSum=-0.936;DB;DP=163;FS=3.957;MQ=60.00;MQRankSum=0.003;QD=16.51;ReadPosRankSum=0.531;SOR=0.910	GT:AD:DP:GQ:PL	0/1:89,74:163:99:2738,0,3387
1	6142418	rs72630691	C	T	5258.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.702;DB;DP=101;FS=5.292;MQ=60.00;MQRankSum=-1.568;QD=19.92;ReadPosRankSum=-0.447;SOR=1.210	GT:AD:DP:GQ:PL	0/1:45,56:101:99:2107,0,1508
1	6142439	rs34308142	C	T	1710.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=-0.248;DB;DP=101;FS=3.948;MQ=60.00;MQRankSum=-1.089;QD=16.93;ReadPosRankSum=-2.249;SOR=0.177	GT:AD:DP:GQ:PL	0/1:52,49:101:99:1741,0,1900
1	6145365	rs2294936	A	G	6918.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.032;ClippingRankSum=-0.892;DB;DP=77;FS=0.000;MQ=60.00;MQRankSum=-0.786;QD=28.47;ReadPosRankSum=0.021;SOR=0.887	GT:AD:DP:GQ:PL	0/1:39,38:77:99:1400,0,1428
1	6146161	rs12754107	C	G	306.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.751;DB;DP=6;FS=0.000;MQ=60.00;MQRankSum=0.751;QD=34.07;ReadPosRankSum=-0.751;SOR=3.056	GT:AD:DP:GQ:PL	0/1:1,5:6:26:201,0,26
1	6147407	rs4908763	C	T	4805.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=-1.212;DB;DP=51;FS=0.000;MQ=60.00;MQRankSum=0.990;QD=29.12;ReadPosRankSum=1.659;SOR=0.962	GT:AD:DP:GQ:PL	0/1:28,23:51:99:845,0,1067
1	6154417	rs2294932	C	T	3770.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=-0.972;DB;DP=31;FS=0.995;MQ=60.00;MQRankSum=-0.179;QD=27.52;ReadPosRankSum=1.839;SOR=0.957	GT:AD:DP:GQ:PL	0/1:17,14:31:99:528,0,613
1	6155332	rs1555144	T	C	2351.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=-0.426;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=-0.569;QD=29.39;ReadPosRankSum=1.356;SOR=1.029	GT:AD:DP:GQ:PL	0/1:9,19:28:99:737,0,306
1	6157434	rs2311802	C	T	9891.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.862;ClippingRankSum=-0.740;DB;DP=110;FS=3.328;MQ=60.00;MQRankSum=-2.393;QD=27.40;ReadPosRankSum=2.176;SOR=0.518	GT:AD:DP:GQ:PL	0/1:55,55:110:99:2048,0,2007
1	6158562	rs2229002	A	G	11345.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=-0.538;DB;DP=111;FS=1.381;MQ=60.00;MQRankSum=-0.700;QD=29.54;ReadPosRankSum=2.014;SOR=0.599	GT:AD:DP:GQ:PL	0/1:48,63:111:99:2342,0,1714
1	6162054	rs6696489	T	C	3769.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=-0.222;DB;DP=59;FS=3.470;MQ=60.00;MQRankSum=-0.152;QD=25.47;ReadPosRankSum=-0.632;SOR=0.349	GT:AD:DP:GQ:PL	0/1:36,23:59:99:817,0,1338
1	6170353	rs2281303	C	T	3452.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.279;DB;DP=42;FS=2.704;MQ=60.24;MQRankSum=-0.307;QD=25.38;ReadPosRankSum=-0.041;SOR=1.070	GT:AD:DP:GQ:PL	0/1:22,20:42:99:691,0,831
1	6170424	rs78789357	CG	C	6149.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MQ=60.34;QD=29.83;SOR=1.406	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1906,144,0
1	6171992	rs59788818	C	A	2604.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.631;ClippingRankSum=0.414;DB;DP=54;FS=3.635;MQ=60.00;MQRankSum=0.533;QD=24.57;ReadPosRankSum=-0.104;SOR=0.456	GT:AD:DP:GQ:PL	0/1:20,34:54:99:1336,0,663
1	6172875	rs4908515	G	A	3836.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MQ=60.00;QD=33.18;SOR=6.826	GT:AD:DP:GQ:PL	1/1:0,29:29:86:1169,86,0
1	6173649	rs2785580	A	G	4133.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.000;MQ=60.00;QD=33.44;SOR=7.764	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1094,78,0
1	6184092	rs2843493	A	G	7837.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.000;MQ=60.00;QD=35.99;SOR=1.345	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2341,171,0
1	6184192	rs2273041	A	G	8784.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.000;MQ=60.00;QD=32.40;SOR=2.641	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2961,210,0
1	6184286	rs2273040	A	G	6112.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=60.00;QD=31.85;SOR=2.173	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2008,138,0
1	6184346	.	T	C	52.45	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.317;ClippingRankSum=1.404;DP=30;FS=44.142;MQ=60.00;MQRankSum=0.374;QD=0.79;ReadPosRankSum=-2.029;SOR=4.798	GT:AD:DP:GQ:PL	0/1:25,5:30:66:66,0,1027
1	6184350	.	A	C	46.49	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.046;ClippingRankSum=0.082;DP=27;FS=27.212;MQ=60.00;MQRankSum=0.276;QD=0.73;ReadPosRankSum=-2.331;SOR=4.165	GT:AD:DP:GQ:PL	0/1:24,3:27:66:66,0,1026
1	6184920	rs2273038	C	G	4430.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.000;MQ=60.00;QD=23.50;SOR=1.632	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1307,90,0
1	6185064	rs55930553	G	A	6662.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.00;QD=23.67;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1987,135,0
1	6185532	rs2273037	G	A	9757.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;FS=0.000;MQ=60.00;QD=26.17;SOR=1.488	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3772,269,0
1	6186961	rs2746060	A	G	5408.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=60.00;QD=30.29;SOR=6.885	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1943,138,0
1	6188044	rs3215558	TG	T	2732.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.000;MQ=60.49;QD=31.06;SOR=7.546	GT:AD:DP:GQ:PL	1/1:0,24:24:72:764,72,0
1	6188377	rs72632513	G	A	7618.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.000;MQ=60.00;QD=32.20;SOR=2.007	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2521,180,0
1	6188546	rs2273034	G	A	7780.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.000;MQ=60.00;QD=32.68;SOR=3.270	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2644,196,0
1	6188779	rs2273033	G	C	12231.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;FS=0.000;MQ=60.00;QD=27.36;SOR=0.920	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3891,276,0
1	6190611	rs1883764	A	G	2677.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.000;MQ=60.00;QD=23.16;SOR=6.932	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1044,75,0
1	6195493	rs2250504	G	A	4733.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.000;MQ=60.00;QD=29.25;SOR=6.148	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1177,84,0
1	6195548	rs72632517	C	T	1051.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=1.255;DB;DP=25;FS=0.000;MQ=60.00;MQRankSum=-0.776;QD=23.89;ReadPosRankSum=2.755;SOR=0.280	GT:AD:DP:GQ:PL	0/1:9,16:25:99:621,0,302
1	6196493	rs7526887	A	G	7338.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.000;MQ=60.00;QD=29.46;SOR=8.920	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2529,177,0
1	6196517	rs7513548	G	A	8386.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.000;MQ=60.00;QD=30.42;SOR=9.190	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2764,195,0
1	6196869	rs2250358	A	G	18791.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;FS=0.000;MQ=60.00;QD=27.89;SOR=1.956	GT:AD:DP:GQ:PL	1/1:0,139:139:99:6053,418,0
1	6196943	rs2746066	A	G	13745.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;FS=0.000;MQ=60.00;QD=29.78;SOR=3.041	GT:AD:DP:GQ:PL	1/1:0,101:101:99:4623,310,0
1	6196951	rs2785582	T	A	13594.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;FS=0.000;MQ=60.00;QD=29.18;SOR=3.423	GT:AD:DP:GQ:PL	1/1:0,101:101:99:4573,307,0
1	6204161	rs17436816	G	A	2102.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.066;ClippingRankSum=0.277;DB;DP=100;FS=0.000;MQ=60.00;MQRankSum=0.414;QD=21.45;ReadPosRankSum=2.874;SOR=0.687	GT:AD:DP:GQ:PL	0/0:100,0:100:99:0,300,4182
1	6204222	rs17489787	C	G	3840.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.107;ClippingRankSum=-0.832;DB;DP=108;FS=0.949;MQ=60.00;MQRankSum=2.041;QD=13.62;ReadPosRankSum=-1.264;SOR=0.763	GT:AD:DP:GQ:PL	0/0:108,0:108:99:0,324,4583
1	6204266	rs9435102	A	G	10300.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=-1.586;DB;DP=85;FS=6.325;MQ=60.00;MQRankSum=0.017;QD=34.56;ReadPosRankSum=1.377;SOR=1.274	GT:AD:DP:GQ:PL	0/1:50,35:85:99:1280,0,1897
1	6206648	rs41279488	C	A	1103.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.284;ClippingRankSum=-0.196;DB;DP=44;FS=0.753;MQ=60.00;MQRankSum=-0.447;QD=22.06;ReadPosRankSum=0.146;SOR=0.603	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1881
1	6209363	rs12565328	T	C	10971.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.364;DB;DP=99;FS=0.000;MQ=60.00;MQRankSum=1.780;QD=34.50;ReadPosRankSum=1.053;SOR=0.759	GT:AD:DP:GQ:PL	1/1:0,99:99:99:4150,296,0
1	6210970	rs12564469	G	A	5364.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.811;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=2.371;QD=30.75;ReadPosRankSum=0.260;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1415,102,0
1	6211183	rs9434711	G	A	6622.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;ClippingRankSum=-0.309;DB;DP=51;FS=2.223;MQ=60.00;MQRankSum=-0.181;QD=29.93;ReadPosRankSum=0.497;SOR=1.154	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2221,154,0
1	6212408	rs746122	G	A	2772.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=-1.543;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=1.252;QD=18.36;ReadPosRankSum=-0.047;SOR=0.223	GT:AD:DP:GQ:PL	0/1:13,18:31:99:688,0,479
1	6212843	rs2311388	T	C	3794.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0.341;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=0.992;QD=29.77;ReadPosRankSum=-0.331;SOR=4.017	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1597,114,0
1	6212870	rs1883604	G	A	1218.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=-0.213;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=-0.431;QD=13.70;ReadPosRankSum=-0.514;SOR=0.385	GT:AD:DP:GQ:PL	0/1:17,14:31:99:486,0,639
1	6215736	rs12074369	C	G	4448.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=-0.463;DB;DP=77;FS=2.018;MQ=60.00;MQRankSum=-1.098;QD=15.67;ReadPosRankSum=0.917;SOR=0.839	GT:AD:DP:GQ:PL	0/1:43,34:77:99:1218,0,1652
1	6239937	rs199614566	C	CG	1608.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MQ=60.00;QD=26.06;SOR=7.569	GT:AD:DP:GQ:PL	1/1:0,16:16:48:596,48,0
1	6257826	rs2294714	T	C	2488.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.470;ClippingRankSum=0.956;DB;DP=56;FS=1.145;MQ=60.00;MQRankSum=1.064;QD=16.37;ReadPosRankSum=2.253;SOR=0.582	GT:AD:DP:GQ:PL	0/1:30,26:56:99:966,0,1059
1	6257856	rs2294713	G	A	2980.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=-0.417;DB;DP=63;FS=6.476;MQ=60.00;MQRankSum=-2.135;QD=18.06;ReadPosRankSum=2.464;SOR=1.075	GT:AD:DP:GQ:PL	0/1:30,33:63:99:1233,0,1086
1	6268049	rs41278918	A	T	3156.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.710;DB;DP=78;FS=2.909;MQ=60.00;MQRankSum=-0.880;QD=17.63;ReadPosRankSum=0.979;SOR=0.468	GT:AD:DP:GQ:PL	0/1:41,37:78:99:1314,0,1478
1	6269340	rs4908865	A	G	3471.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.792;ClippingRankSum=-0.183;DB;DP=72;FS=0.000;MQ=60.00;MQRankSum=1.155;QD=19.72;ReadPosRankSum=2.422;SOR=0.723	GT:AD:DP:GQ:PL	0/0:72,0:72:99:0,217,3046
1	6272137	rs709208	A	G	8948.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=-0.403;DB;DP=91;FS=0.942;MQ=60.00;MQRankSum=-0.732;QD=26.95;ReadPosRankSum=0.341;SOR=0.781	GT:AD:DP:GQ:PL	0/1:43,48:91:99:1759,0,1531
1	6273206	rs55823245	C	T	5139.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=5.513;ClippingRankSum=-0.405;DB;DP=123;FS=0.551;MQ=60.00;MQRankSum=-1.622;QD=18.42;ReadPosRankSum=3.612;SOR=0.769	GT:AD:DP:GQ:PL	0/0:123,0:123:99:0,369,5160
1	6278414	rs709209	A	G	8174.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=-1.989;DB;DP=89;FS=1.553;MQ=60.00;MQRankSum=-1.137;QD=27.62;ReadPosRankSum=2.352;SOR=0.824	GT:AD:DP:GQ:PL	0/1:46,43:89:99:1539,0,1703
1	6279370	rs846111	G	C	2392.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=-0.257;DB;DP=50;FS=0.706;MQ=60.00;MQRankSum=0.094;QD=19.14;ReadPosRankSum=0.956;SOR=0.757	GT:AD:DP:GQ:PL	0/1:24,26:50:99:1005,0,845
1	6291918	.	T	TA	305.14	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.909;DP=25;FS=0.000;MQ=60.00;MQRankSum=-0.021;QD=3.21;ReadPosRankSum=-1.695;SOR=0.693	GT:AD:DP:GQ:PL	0/0:24,1:25:49:0,49,592
1	6305053	rs12408527	C	T	129.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.676;DB;DP=6;FS=0.000;MQ=60.00;MQRankSum=1.098;QD=18.51;ReadPosRankSum=0.470;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,4:6:66:119,0,66
1	6305292	rs61760836	C	A	1098.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.534;DB;DP=32;FS=2.478;MQ=60.00;MQRankSum=-0.937;QD=16.64;ReadPosRankSum=2.786;SOR=0.389	GT:AD:DP:GQ:PL	0/1:18,14:32:99:530,0,1370
1	6305303	rs61760837	C	A	1154.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=-0.248;DB;DP=35;FS=2.375;MQ=60.00;MQRankSum=-0.262;QD=17.23;ReadPosRankSum=1.406;SOR=0.417	GT:AD:DP:GQ:PL	0/1:19,16:35:99:604,0,1399
1	6307389	rs6577566	C	T	147.22	PASS	AC=0;AF=0.00;AN=0;DB;DP=4;FS=0.000;MQ=60.00;QD=27.49;SOR=1.609	GT	./.
1	6309319	rs1883608	C	G	592.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=-1.285;DB;DP=13;FS=2.720;MQ=60.00;MQRankSum=0.857;QD=19.74;ReadPosRankSum=0.913;SOR=0.192	GT:AD:DP:GQ:PL	0/1:6,7:13:99:248,0,186
1	6313938	rs12735670	C	T	2104.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.192;DB;DP=63;FS=4.387;MQ=60.00;MQRankSum=0.574;QD=16.57;ReadPosRankSum=1.846;SOR=1.010	GT:AD:DP:GQ:PL	0/1:33,30:63:99:1114,0,1228
1	6314349	rs6696630	A	G	6098.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.063;DB;DP=79;FS=1.609;MQ=60.00;MQRankSum=1.903;QD=24.89;ReadPosRankSum=-0.003;SOR=0.579	GT:AD:DP:GQ:PL	1/1:0,79:79:99:3341,237,0
1	6314479	rs12740426	C	T	3388.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=0.142;DB;DP=102;FS=0.642;MQ=60.00;MQRankSum=1.016;QD=17.38;ReadPosRankSum=2.425;SOR=0.604	GT:AD:DP:GQ:PL	0/1:56,46:102:99:1642,0,2072
1	6314822	rs11590458	T	C	4255.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;ClippingRankSum=-1.374;DB;DP=100;FS=0.984;MQ=60.00;MQRankSum=0.522;QD=17.66;ReadPosRankSum=3.133;SOR=0.767	GT:AD:DP:GQ:PL	0/1:55,45:100:99:1580,0,2019
1	6320708	rs61760841	A	G	89.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=-0.406;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.988;QD=17.92;ReadPosRankSum=0.406;SOR=0.132	GT:AD:DP:GQ:PL	0/1:1,1:2:38:38,0,39
1	6355065	rs35553413	G	C	1856.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.327;DB;DP=99;FS=9.870;MQ=60.00;MQRankSum=-0.012;QD=16.72;ReadPosRankSum=1.803;SOR=0.300	GT:AD:DP:GQ:PL	0/0:99,0:99:99:0,297,4263
1	6387572	rs4908880	G	A	1255.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.006;DB;DP=81;FS=11.058;MQ=60.03;MQRankSum=-0.261;QD=12.07;ReadPosRankSum=-0.995;SOR=1.908	GT:AD:DP:GQ:PL	0/0:81,0:81:99:0,243,3432
1	6387629	rs149253585	CAG	C	1249.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.824;ClippingRankSum=-0.469;DB;DP=47;FS=7.778;MQ=60.05;MQRankSum=-0.104;QD=15.81;ReadPosRankSum=0.883;SOR=0.104	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,140,2138
1	6399711	rs2235692	A	G	718.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.023;ClippingRankSum=-0.564;DB;DP=31;FS=4.453;MQ=60.00;MQRankSum=1.424;QD=16.70;ReadPosRankSum=-0.105;SOR=1.682	GT:AD:DP:GQ:PL	0/0:31,0:31:99:0,99,1463
1	6399724	rs6683889	T	C	722.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.677;DB;DP=41;FS=4.442;MQ=60.00;MQRankSum=-0.933;QD=15.04;ReadPosRankSum=-0.243;SOR=1.558	GT:AD:DP:GQ:PL	0/0:40,1:41:99:0,112,1647
1	6399780	rs6680950	A	G	368.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.802;ClippingRankSum=-1.069;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=-0.878;QD=12.27;ReadPosRankSum=-0.518;SOR=0.412	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,1215
1	6399797	rs2235691	C	T	215.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.574;ClippingRankSum=-0.803;DB;DP=24;FS=0.000;MQ=59.85;MQRankSum=-0.009;QD=8.96;ReadPosRankSum=-1.739;SOR=0.423	GT:AD:DP:GQ:PL	0/0:24,0:24:75:0,75,1104
1	6399799	.	GT	G	362.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.347;DP=12;FS=3.056;MQ=59.84;MQRankSum=-1.196;QD=5.34;ReadPosRankSum=-0.424;SOR=1.949	GT:AD:DP:GQ:PL	0/1:7,5:12:68:68,0,95
1	6420490	rs3827717	T	A	897.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.212;ClippingRankSum=-0.746;DB;DP=62;FS=0.000;MQ=60.00;MQRankSum=0.441;QD=19.09;ReadPosRankSum=0.220;SOR=0.112	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,187,2721
1	6453520	.	C	CG	3145.86	PASS	AC=2;AF=1.00;AN=2;DP=26;FS=0.000;MQ=60.40;QD=26.11;SOR=5.918	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1044,78,0
1	6473294	rs7529205	A	G	1050.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.215;ClippingRankSum=1.208;DB;DP=52;FS=3.896;MQ=60.00;MQRankSum=0.097;QD=17.50;ReadPosRankSum=1.755;SOR=1.096	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,2198
1	6500604	.	C	CG	550.16	PASS	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MQ=60.00;QD=33.83;SOR=3.442	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
1	6500610	rs200454180	AC	A	629.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MQ=60.00;QD=27.75;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,5:5:18:259,18,0
1	6500626	.	C	CG	897.04	PASS	AC=2;AF=1.00;AN=2;DP=11;FS=0.000;MQ=60.00;QD=31.59;SOR=4.892	GT:AD:DP:GQ:PL	1/1:0,11:11:33:426,33,0
1	6530965	rs112662590	C	CG	7554.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.000;MQ=60.18;QD=32.29;SOR=1.663	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2487,223,0
1	6579607	rs1556035	C	T	6805.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=60.00;QD=30.77;SOR=4.575	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2249,157,0
1	6585804	rs13513	C	T	7114.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.00;QD=30.53;SOR=7.416	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1963,135,0
1	6586070	rs7548042	C	T	11327.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;FS=0.000;MQ=60.00;QD=29.83;SOR=1.911	GT:AD:DP:GQ:PL	1/1:0,81:81:99:3434,243,0
1	6591937	rs932112	T	C	6444.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=60.00;QD=28.05;SOR=7.864	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1805,126,0
1	6601773	rs3761927	T	C	2560.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MQ=60.00;QD=27.80;SOR=8.349	GT:AD:DP:GQ:PL	1/1:0,23:23:69:963,69,0
1	6602223	.	ATT	A,AT	1157.86	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.259;DP=12;FS=0.000;MQ=60.28;MQRankSum=1.919;QD=14.84;ReadPosRankSum=-0.531;SOR=3.056	GT:AD:DP:GQ:PL	1/2:1,3,8:12:23:256,165,174,48,0,23
1	6602241	rs4434862	C	A	2886.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.000;MQ=59.31;QD=29.92;SOR=6.091	GT:AD:DP:GQ:PL	1/1:0,15:15:48:687,48,0
1	6609559	rs11122091	C	A	7820.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MQ=60.00;QD=29.54;SOR=10.397	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2342,163,0
1	6609851	rs10864622	A	G	11323.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.000;MQ=60.00;QD=30.43;SOR=3.628	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2963,210,0
1	6609896	rs11579888	G	A	8067.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.00;QD=21.85;SOR=6.518	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1903,135,0
1	6610366	rs2063805	T	C	7338.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=52.06;QD=31.75;SOR=7.042	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2148,156,0
1	6610382	rs2063806	C	T	7798.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=55.16;QD=33.69;SOR=7.134	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2244,157,0
1	6610743	.	C	CT	260.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-0.156;DP=13;FS=0.000;MQ=59.96;MQRankSum=-0.415;QD=3.06;ReadPosRankSum=-1.038;SOR=0.330	GT:AD:DP:GQ:PL	0/1:5,8:13:35:111,0,35
1	6614391	rs6693391	A	C	5072.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.000;MQ=60.00;QD=28.46;SOR=1.138	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1418,96,0
1	6614415	rs6693400	A	G	4647.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.000;MQ=60.00;QD=33.15;SOR=1.212	GT:AD:DP:GQ:PL	1/1:0,25:25:81:1211,81,0
1	6614535	rs4908923	G	A	5708.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.000;MQ=60.00;QD=34.04;SOR=1.662	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1845,129,0
1	6614653	rs4908924	C	G	1755.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.000;MQ=60.00;QD=25.22;SOR=6.043	GT:AD:DP:GQ:PL	1/1:0,11:11:33:486,33,0
1	6615690	rs925745	A	G	4219.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.000;MQ=60.00;QD=32.67;SOR=4.525	GT:AD:DP:GQ:PL	1/1:0,25:25:78:1164,78,0
1	6615695	rs925744	C	T	4242.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.000;MQ=60.00;QD=29.57;SOR=4.571	GT:AD:DP:GQ:PL	1/1:0,25:25:78:1164,78,0
1	6631319	rs11122096	G	A	7466.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MQ=60.12;QD=30.13;SOR=7.569	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2085,150,0
1	6631352	rs34514006	TC	T	3980.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.15;QD=28.43;SOR=6.917	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1183,114,0
1	6631431	rs11587438	C	T	2279.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.000;MQ=60.00;QD=36.71;SOR=4.654	GT:AD:DP:GQ:PL	1/1:0,19:19:57:829,57,0
1	6635231	rs10864628	A	G	21713.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=150;FS=0.000;MQ=60.00;QD=35.52;SOR=1.470	GT:AD:DP:GQ:PL	1/1:0,150:150:99:6383,451,0
1	6636461	rs17492553	C	T	10815.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;FS=0.000;MQ=60.00;QD=28.20;SOR=2.525	GT:AD:DP:GQ:PL	1/1:0,80:80:99:3433,240,0
1	6639847	rs4908932	G	T	1322.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=-1.549;DB;DP=17;FS=0.000;MQ=60.00;MQRankSum=-0.366;QD=24.96;ReadPosRankSum=-0.498;SOR=1.524	GT:AD:DP:GQ:PL	0/1:4,13:17:99:518,0,125
1	6639943	rs4908565	G	A	97.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=-0.170;DB;DP=5;FS=0.000;MQ=60.00;MQRankSum=0.283;QD=19.46;ReadPosRankSum=0.170;SOR=0.425	GT:AD:DP:GQ:PL	0/1:1,4:5:20:128,0,20
1	6640116	rs17029626	A	G	50.05	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.480;QD=16.68;ReadPosRankSum=0.000;SOR=0.976	GT:AD:DP:GQ:PL	0/0:2,0:2:6:0,6,90
1	6641348	rs72634778	G	A	3503.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.441;ClippingRankSum=-1.483;DB;DP=71;FS=8.500;MQ=60.00;MQRankSum=-0.461;QD=19.25;ReadPosRankSum=3.290;SOR=0.336	GT:AD:DP:GQ:PL	0/1:32,39:71:99:1423,0,1119
1	6645867	rs6682920	G	A	1905.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.433;DB;DP=41;FS=1.504;MQ=60.00;MQRankSum=-0.280;QD=19.64;ReadPosRankSum=1.488;SOR=0.974	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,122,1679
1	6646959	rs55956164	GCCTGCCTTC	G	9215.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;ClippingRankSum=-0.622;DB;DP=106;FS=2.932;MQ=58.63;MQRankSum=-2.248;QD=21.43;ReadPosRankSum=-0.915;SOR=0.859	GT:AD:DP:GQ:PL	0/1:67,39:106:99:1415,0,4142
1	6659505	rs2232460	G	A	3617.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.769;ClippingRankSum=0.655;DB;DP=57;FS=5.580;MQ=60.00;MQRankSum=-0.260;QD=19.98;ReadPosRankSum=2.619;SOR=1.207	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,172,2484
1	6662913	rs6674407	G	A	1714.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.747;ClippingRankSum=1.026;DB;DP=40;FS=3.158;MQ=60.00;MQRankSum=-0.768;QD=20.90;ReadPosRankSum=0.936;SOR=0.317	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1746
1	6677064	rs10779795	A	G	2090.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.046;ClippingRankSum=-0.431;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=0.087;QD=16.33;ReadPosRankSum=2.666;SOR=0.223	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,168,2367
1	6679848	rs2072948	C	T	2783.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=1.121;DB;DP=53;FS=1.378;MQ=60.00;MQRankSum=0.322;QD=19.46;ReadPosRankSum=1.950;SOR=0.813	GT:AD:DP:GQ:PL	0/1:27,26:53:99:962,0,982
1	6681375	rs6695474	C	T	4552.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=-0.851;DB;DP=110;FS=0.917;MQ=60.00;MQRankSum=0.543;QD=19.13;ReadPosRankSum=-0.666;SOR=0.523	GT:AD:DP:GQ:PL	0/1:44,66:110:99:2375,0,1521
1	6681744	rs3747994	C	T	7645.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=-0.486;DB;DP=87;FS=6.406;MQ=60.00;MQRankSum=-0.158;QD=26.92;ReadPosRankSum=-0.469;SOR=2.512	GT:AD:DP:GQ:PL	0/1:43,44:87:99:1657,0,1584
1	6685416	rs143084975	G	C	306.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=1.185;DB;DP=19;FS=6.192;MQ=60.00;MQRankSum=-0.306;QD=16.11;ReadPosRankSum=0.306;SOR=2.049	GT:AD:DP:GQ:PL	0/1:9,10:19:99:337,0,253
1	6685442	rs12746591	A	G	1232.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=-1.017;DB;DP=15;FS=0.000;MQ=60.00;MQRankSum=-1.883;QD=31.59;ReadPosRankSum=-1.950;SOR=0.656	GT:AD:DP:GQ:PL	0/1:9,6:15:99:210,0,353
1	6690140	rs742394	A	G	3419.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=-0.636;DB;DP=36;FS=5.534;MQ=60.00;MQRankSum=-2.159;QD=28.98;ReadPosRankSum=-0.114;SOR=3.338	GT:AD:DP:GQ:PL	0/1:16,20:36:99:761,0,588
1	6692273	rs34491693	C	CA	600.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=-0.199;DB;DP=17;FS=0.000;MQ=60.00;MQRankSum=0.433;QD=11.77;ReadPosRankSum=-0.784;SOR=0.460	GT:AD:DP:GQ:PL	0/1:9,8:17:99:149,0,167
1	6693097	rs3174820	A	G	2737.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.664;ClippingRankSum=-0.293;DB;DP=71;FS=7.171;MQ=57.26;MQRankSum=-8.481;QD=17.66;ReadPosRankSum=1.251;SOR=0.209	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,213,2991
1	6693641	rs3830771	C	CATT	138.97	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.380;ClippingRankSum=0.000;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=1.380;QD=27.79;ReadPosRankSum=0.720;SOR=1.329	GT:AD:DP:GQ:PL	0/0:2,0:2:6:0,6,94
1	6694207	rs12727844	A	G	2058.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.482;ClippingRankSum=-0.037;DB;DP=52;FS=1.204;MQ=60.00;MQRankSum=-0.054;QD=14.29;ReadPosRankSum=0.791;SOR=0.926	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,2223
1	6694513	rs1043703	G	T	998.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.613;DB;DP=47;FS=0.000;MQ=60.00;MQRankSum=-0.509;QD=21.24;ReadPosRankSum=2.420;SOR=0.492	GT:AD:DP:GQ:PL	0/1:21,26:47:99:1029,0,1064
1	6694514	rs17692	A	T	998.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.554;DB;DP=46;FS=0.000;MQ=60.00;MQRankSum=0.185;QD=21.70;ReadPosRankSum=2.339;SOR=0.643	GT:AD:DP:GQ:PL	0/1:20,26:46:99:1029,0,1064
1	6694574	rs6804	G	A	2273.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.848;ClippingRankSum=-1.724;DB;DP=48;FS=3.295;MQ=60.00;MQRankSum=-1.277;QD=19.26;ReadPosRankSum=0.122;SOR=0.389	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,143,1970
1	6694927	rs2294532	C	T	1365.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.078;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=0.472;QD=19.50;ReadPosRankSum=-0.449;SOR=0.328	GT:AD:DP:GQ:PL	0/1:15,16:31:99:604,0,496
1	6695802	rs6577583	A	G	8223.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=1.529;DB;DP=92;FS=0.650;MQ=59.91;MQRankSum=-1.459;QD=29.37;ReadPosRankSum=1.121;SOR=0.798	GT:AD:DP:GQ:PL	0/1:41,51:92:99:1939,0,1524
1	6700129	.	T	A	115.71	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.232;ClippingRankSum=-0.561;DP=24;FS=15.567;MQ=60.00;MQRankSum=0.157;QD=1.26;ReadPosRankSum=-0.500;SOR=3.579	GT:AD:DP:GQ:PL	0/1:17,7:24:40:40,0,449
1	6700131	.	C	A	133.15	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.984;DP=25;FS=6.335;MQ=60.00;MQRankSum=1.980;QD=1.53;ReadPosRankSum=-1.956;SOR=2.557	GT:AD:DP:GQ:PL	0/1:18,7:25:20:20,0,375
1	6704635	rs200458	A	G	8514.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.547;ClippingRankSum=1.276;DB;DP=75;FS=9.273;MQ=60.00;MQRankSum=-0.228;QD=34.19;ReadPosRankSum=-0.009;SOR=0.287	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3084,224,0
1	6705874	rs200454	G	C	1790.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.111;DB;DP=90;FS=1.513;MQ=60.00;MQRankSum=1.320;QD=19.89;ReadPosRankSum=2.388;SOR=0.496	GT:AD:DP:GQ:PL	0/1:42,48:90:99:1821,0,1523
1	6711146	rs12145525	T	C	4279.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.113;ClippingRankSum=-0.362;DB;DP=93;FS=1.965;MQ=60.00;MQRankSum=0.598;QD=20.00;ReadPosRankSum=2.032;SOR=0.836	GT:AD:DP:GQ:PL	0/0:92,1:93:99:0,269,3841
1	6713114	rs2235564	C	T	1999.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=1.041;DB;DP=46;FS=0.000;MQ=60.00;MQRankSum=0.932;QD=18.01;ReadPosRankSum=1.298;SOR=0.250	GT:AD:DP:GQ:PL	0/1:21,25:46:99:911,0,717
1	6761702	rs3761925	C	T	2114.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.664;DB;DP=53;FS=7.467;MQ=60.00;MQRankSum=0.586;QD=15.78;ReadPosRankSum=0.100;SOR=2.584	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,160,2268
1	6866978	rs660880	G	A	2610.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.303;ClippingRankSum=-1.482;DB;DP=42;FS=3.010;MQ=60.00;MQRankSum=0.547;QD=24.40;ReadPosRankSum=-2.131;SOR=0.137	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1516,126,0
1	6867276	rs12070784	T	C	646.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.520;ClippingRankSum=-0.246;DB;DP=41;FS=0.000;MQ=60.00;MQRankSum=0.016;QD=14.05;ReadPosRankSum=0.084;SOR=0.233	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1754
1	6931643	rs149257900	T	TA	276.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=-0.010;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=0.989;QD=9.20;ReadPosRankSum=-1.386;SOR=0.547	GT:AD:DP:GQ:PL	0/1:14,14:28:99:316,0,317
1	6946397	rs34059893	TA	T	650.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.838;ClippingRankSum=-0.851;DB;DP=30;FS=7.005;MQ=60.00;MQRankSum=0.760;QD=12.50;ReadPosRankSum=1.145;SOR=2.093	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,893
1	6947717	rs3810982	C	T	1014.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.418;ClippingRankSum=1.066;DB;DP=68;FS=3.952;MQ=60.00;MQRankSum=-0.755;QD=15.85;ReadPosRankSum=0.398;SOR=0.368	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,204,2887
1	6947973	rs3827726	C	T	476.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.192;ClippingRankSum=-0.059;DB;DP=44;FS=0.000;MQ=60.00;MQRankSum=0.184;QD=14.88;ReadPosRankSum=0.622;SOR=0.569	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1919
1	7151479	rs72640073	T	C	3661.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.231;ClippingRankSum=-0.946;DB;DP=58;FS=2.589;MQ=60.00;MQRankSum=0.549;QD=18.59;ReadPosRankSum=2.568;SOR=0.902	GT:AD:DP:GQ:PL	0/1:29,29:58:99:1057,0,1062
1	7202190	rs970973	T	C	3019.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;ClippingRankSum=-1.624;DB;DP=73;FS=18.582;MQ=60.00;MQRankSum=1.948;QD=18.08;ReadPosRankSum=1.398;SOR=0.708	GT:AD:DP:GQ:PL	0/1:33,40:73:99:1520,0,1192
1	7289606	rs6659573	T	G	1442.91	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.000;MQ=60.00;QD=26.77;SOR=6.994	GT:AD:DP:GQ:PL	1/1:0,12:12:36:524,36,0
1	7289612	rs6659575	T	G	1448.92	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.000;MQ=60.00;QD=29.69;SOR=7.054	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
1	7289619	rs6577423	G	A	1438.92	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;ClippingRankSum=-1.628;DB;DP=9;FS=0.000;MQ=60.00;MQRankSum=-1.733;QD=26.65;ReadPosRankSum=1.523;SOR=5.610	GT:AD:DP:GQ:PL	1/1:0,9:9:30:450,30,0
1	7289777	rs4243824	G	A	4054.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.214;DB;DP=41;FS=1.769;MQ=60.00;MQRankSum=-0.069;QD=31.19;ReadPosRankSum=1.631;SOR=0.909	GT:AD:DP:GQ:PL	0/1:26,15:41:99:521,0,985
1	7289959	rs763197	A	G	1584.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=-0.117;DB;DP=14;FS=6.576;MQ=60.00;MQRankSum=-0.632;QD=31.68;ReadPosRankSum=0.749;SOR=3.987	GT:AD:DP:GQ:PL	0/1:11,3:14:87:87,0,439
1	7527824	rs72642857	C	T	1789.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.782;ClippingRankSum=-0.128;DB;DP=75;FS=0.000;MQ=60.00;MQRankSum=-0.252;QD=18.83;ReadPosRankSum=2.813;SOR=0.634	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,226,3192
1	7527996	rs1201529	T	C	4307.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.605;DB;DP=74;FS=0.000;MQ=60.00;MQRankSum=-0.763;QD=25.34;ReadPosRankSum=-1.464;SOR=0.738	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3106,222,0
1	7624855	rs17031140	G	T	815.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=-0.313;DB;DP=32;FS=1.433;MQ=60.00;MQRankSum=0.679;QD=15.10;ReadPosRankSum=0.284;SOR=0.945	GT:AD:DP:GQ:PL	0/1:18,14:32:99:519,0,648
1	7624970	rs7556160	A	G	1208.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.604;DB;DP=33;FS=1.637;MQ=60.00;MQRankSum=0.991;QD=14.05;ReadPosRankSum=1.473;SOR=0.903	GT:AD:DP:GQ:PL	0/1:20,13:33:99:458,0,729
1	7700352	rs4072987	G	C	1303.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=2.654;DB;DP=60;FS=11.345;MQ=60.00;MQRankSum=0.277;QD=21.72;ReadPosRankSum=0.254;SOR=0.017	GT:AD:DP:GQ:PL	0/1:26,34:60:99:1334,0,1999
1	7700353	rs34766132	G	A	1303.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.560;ClippingRankSum=0.898;DB;DP=60;FS=11.264;MQ=60.00;MQRankSum=0.448;QD=21.72;ReadPosRankSum=0.629;SOR=0.017	GT:AD:DP:GQ:PL	0/1:26,34:60:99:1334,0,1999
1	7700674	rs12743421	C	T	1408.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.400;DB;DP=87;FS=4.699;MQ=60.00;MQRankSum=-1.283;QD=16.00;ReadPosRankSum=1.495;SOR=0.153	GT:AD:DP:GQ:PL	0/1:47,40:87:99:1439,0,1767
1	7723588	rs3737906	C	T	1988.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.777;ClippingRankSum=-0.396;DB;DP=160;FS=0.000;MQ=60.00;MQRankSum=-1.593;QD=15.18;ReadPosRankSum=-0.312;SOR=0.616	GT:AD:DP:GQ:PL	0/0:160,0:160:99:0,481,6955
1	7723957	rs12128526	G	A	12260.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;ClippingRankSum=0.846;DB;DP=184;FS=1.173;MQ=60.00;MQRankSum=-1.534;QD=19.25;ReadPosRankSum=1.957;SOR=0.817	GT:AD:DP:GQ:PL	0/1:90,94:184:99:3514,0,3341
1	7725284	rs4908671	C	A	2731.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=-0.423;DB;DP=49;FS=0.000;MQ=60.00;MQRankSum=-0.476;QD=20.24;ReadPosRankSum=-0.268;SOR=0.571	GT:AD:DP:GQ:PL	0/1:19,30:49:99:1067,0,688
1	7725414	rs4908672	C	T	1373.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=-1.510;DB;DP=18;FS=0.000;MQ=60.00;MQRankSum=0.859;QD=25.92;ReadPosRankSum=0.721;SOR=0.892	GT:AD:DP:GQ:PL	0/1:5,13:18:99:497,0,116
1	7737799	rs3011926	A	G	5521.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.312;DB;DP=100;FS=4.105;MQ=60.00;MQRankSum=-0.504;QD=15.78;ReadPosRankSum=1.352;SOR=1.062	GT:AD:DP:GQ:PL	0/1:56,44:100:99:1568,0,2138
1	7792411	rs2301488	C	T	761.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.655;DB;DP=39;FS=1.270;MQ=60.00;MQRankSum=0.320;QD=18.56;ReadPosRankSum=-0.059;SOR=0.394	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1674
1	7796641	rs2071985	A	G	800.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.692;ClippingRankSum=-0.375;DB;DP=58;FS=9.226;MQ=60.00;MQRankSum=1.148;QD=15.10;ReadPosRankSum=-0.609;SOR=0.155	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,174,2449
1	7797734	rs1417986	T	A	3192.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=-0.057;DB;DP=82;FS=14.985;MQ=60.00;MQRankSum=0.067;QD=19.46;ReadPosRankSum=1.056;SOR=0.240	GT:AD:DP:GQ:PL	0/1:37,45:82:99:1666,0,1326
1	7805208	rs2071986	G	T	935.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=-1.070;DB;DP=24;FS=0.000;MQ=60.00;MQRankSum=0.797;QD=21.25;ReadPosRankSum=1.471;SOR=0.608	GT:AD:DP:GQ:PL	0/1:13,11:24:99:412,0,498
1	7807897	rs12133253	A	G	2643.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=-2.478;DB;DP=57;FS=5.381;MQ=60.04;MQRankSum=0.771;QD=19.15;ReadPosRankSum=-0.395;SOR=1.184	GT:AD:DP:GQ:PL	0/1:20,37:57:99:1426,0,692
1	7807966	rs34083763	GT	G	665.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;ClippingRankSum=-1.920;DB;DP=35;FS=0.000;MQ=60.07;MQRankSum=-0.688;QD=7.47;ReadPosRankSum=-1.169;SOR=0.368	GT:AD:DP:GQ:PL	0/1:14,21:35:99:436,0,269
1	7809728	.	C	CT	639.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=-0.828;DP=49;FS=0.000;MQ=60.07;MQRankSum=-1.135;QD=6.88;ReadPosRankSum=1.812;SOR=0.145	GT:AD:DP:GQ:PL	0/1:32,17:49:99:279,0,685
1	7811014	rs1573753	G	A	2757.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;ClippingRankSum=0.429;DB;DP=78;FS=10.100;MQ=60.00;MQRankSum=-0.051;QD=17.34;ReadPosRankSum=0.259;SOR=1.542	GT:AD:DP:GQ:PL	0/1:39,39:78:99:1412,0,1422
1	7811215	rs10779689	A	G	3423.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.407;DB;DP=74;FS=4.440;MQ=60.00;MQRankSum=1.233;QD=21.00;ReadPosRankSum=2.705;SOR=0.461	GT:AD:DP:GQ:PL	0/1:29,45:74:99:1750,0,1030
1	7812398	rs9919223	A	G	254.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.470;DB;DP=10;FS=0.000;MQ=60.00;MQRankSum=0.296;QD=11.05;ReadPosRankSum=-0.122;SOR=0.933	GT:AD:DP:GQ:PL	0/1:8,2:10:59:59,0,326
1	7815554	rs12408963	G	A	490.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=1.310;DB;DP=33;FS=0.000;MQ=60.00;MQRankSum=-0.578;QD=14.42;ReadPosRankSum=1.981;SOR=0.053	GT:AD:DP:GQ:PL	0/1:19,14:33:99:521,0,744
1	7826313	rs5772289	A	AT	3384.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.029;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-0.440;QD=24.53;ReadPosRankSum=-0.470;SOR=5.336	GT:AD:DP:GQ:PL	1/1:0,34:34:99:971,102,0
1	7826347	rs697672	C	T	6643.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.000;MQ=60.07;QD=30.56;SOR=4.534	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1879,132,0
1	7826394	rs72632049	C	G	1960.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=1.911;DB;DP=50;FS=3.962;MQ=60.06;MQRankSum=-0.513;QD=16.33;ReadPosRankSum=-0.683;SOR=0.383	GT:AD:DP:GQ:PL	0/1:31,19:50:99:627,0,1108
1	7833485	rs11576572	G	A	509.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.981;DB;DP=37;FS=1.030;MQ=60.00;MQRankSum=-0.553;QD=13.76;ReadPosRankSum=1.700;SOR=0.820	GT:AD:DP:GQ:PL	0/1:22,15:37:99:540,0,856
1	7838113	rs697675	A	C	1356.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.039;ClippingRankSum=1.581;DB;DP=55;FS=2.486;MQ=60.00;MQRankSum=-0.195;QD=22.60;ReadPosRankSum=2.098;SOR=0.372	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,166,2388
1	7845695	rs228729	T	C	3468.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=-0.518;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=-1.830;QD=27.32;ReadPosRankSum=1.697;SOR=1.940	GT:AD:DP:GQ:PL	0/1:16,16:32:99:598,0,546
1	7847362	rs56970433	C	CT	5089.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.000;MQ=60.05;QD=28.92;SOR=5.473	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1490,144,0
1	7847529	rs2859390	A	G	9132.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=1.533;DB;DP=73;FS=10.640;MQ=60.00;MQRankSum=1.148;QD=27.67;ReadPosRankSum=0.100;SOR=0.356	GT:AD:DP:GQ:PL	0/1:39,34:73:99:1267,0,1465
1	7847614	rs697685	G	A	7153.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.120;DB;DP=63;FS=0.000;MQ=60.00;MQRankSum=-0.492;QD=27.70;ReadPosRankSum=0.472;SOR=1.069	GT:AD:DP:GQ:PL	0/1:30,33:63:99:1240,0,1101
1	7861153	rs34166146	C	CT	724.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=1.353;DB;DP=48;FS=5.598;MQ=60.00;MQRankSum=0.146;QD=14.48;ReadPosRankSum=-0.173;SOR=0.300	GT:AD:DP:GQ:PL	0/1:21,27:48:99:764,0,555
1	7861304	rs707465	T	C	4487.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785;ClippingRankSum=-0.657;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=1.021;QD=31.78;ReadPosRankSum=-0.207;SOR=0.665	GT:AD:DP:GQ:PL	0/1:17,14:31:99:476,0,664
1	7861345	rs488728	G	A	818.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=-0.340;DB;DP=37;FS=0.000;MQ=60.00;MQRankSum=0.908;QD=22.11;ReadPosRankSum=-0.587;SOR=0.065	GT:AD:DP:GQ:PL	0/1:15,22:37:99:849,0,541
1	7863051	rs72632072	A	T	626.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.775;ClippingRankSum=-0.734;DB;DP=41;FS=6.535;MQ=60.00;MQRankSum=-0.799;QD=15.27;ReadPosRankSum=1.186;SOR=0.143	GT:AD:DP:GQ:PL	0/1:23,18:41:99:657,0,840
1	7863293	rs228642	C	T	622.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;ClippingRankSum=1.547;DB;DP=33;FS=0.000;MQ=60.00;MQRankSum=1.707;QD=18.85;ReadPosRankSum=0.694;SOR=0.264	GT:AD:DP:GQ:PL	0/1:16,17:33:99:653,0,581
1	7869915	rs228668	G	C	7678.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.000;MQ=60.00;QD=22.60;SOR=4.199	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1907,132,0
1	7870048	rs228669	T	C	7177.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MQ=60.00;QD=32.58;SOR=0.832	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2114,150,0
1	7870144	rs228670	A	C	9327.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.000;MQ=60.00;QD=30.20;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2155,153,0
1	7879627	rs10462018	C	T	623.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.440;ClippingRankSum=-0.702;DB;DP=40;FS=0.000;MQ=60.00;MQRankSum=0.106;QD=19.47;ReadPosRankSum=-0.263;SOR=0.148	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1737
1	7880469	rs228691	A	G	1429.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.544;DB;DP=63;FS=0.714;MQ=60.00;MQRankSum=-0.334;QD=22.68;ReadPosRankSum=1.033;SOR=0.574	GT:AD:DP:GQ:PL	0/1:25,38:63:99:1460,0,855
1	7886424	rs697693	G	A	3405.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=-0.213;DB;DP=33;FS=0.000;MQ=60.00;MQRankSum=-0.339;QD=27.24;ReadPosRankSum=2.234;SOR=0.451	GT:AD:DP:GQ:PL	0/1:14,19:33:99:720,0,504
1	7887248	rs2859387	G	A	8229.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.047;DB;DP=85;FS=1.322;MQ=60.00;MQRankSum=-1.321;QD=33.59;ReadPosRankSum=1.932;SOR=0.558	GT:AD:DP:GQ:PL	0/1:45,40:85:99:1374,0,1610
1	7887493	rs228696	T	C	24961.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=192;FS=0.000;MQ=60.00;QD=32.94;SOR=2.122	GT:AD:DP:GQ:PL	1/1:0,192:192:99:8165,577,0
1	7887926	rs11590657	A	G	1340.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.008;DB;DP=70;FS=4.708;MQ=60.00;MQRankSum=-0.579;QD=19.14;ReadPosRankSum=0.644;SOR=0.323	GT:AD:DP:GQ:PL	0/1:33,37:70:99:1371,0,1238
1	7889804	rs228701	C	G	10377.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.777;DB;DP=81;FS=0.000;MQ=60.00;MQRankSum=0.057;QD=27.85;ReadPosRankSum=-1.404;SOR=0.979	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1624,0,1392
1	7889941	rs2640908	C	T	14771.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=1.126;DB;DP=143;FS=0.595;MQ=59.98;MQRankSum=-1.396;QD=27.25;ReadPosRankSum=-0.426;SOR=0.659	GT:AD:DP:GQ:PL	0/1:80,63:143:99:2286,0,3038
1	7889972	rs57875989	GAGAATCCATCCCATCCTACTGCCAGCGCTCTGTCCACAGGATCGCCTCCCATGA	G	3515.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.293;ClippingRankSum=0.236;DB;DP=81;FS=0.608;MQ=58.90;MQRankSum=-6.508;QD=6.31;ReadPosRankSum=0.190;SOR=0.798	GT:AD:DP:GQ:PL	0/1:70,11:81:99:302,0,2878
1	7890064	rs12023156	A	G	3200.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.611;DB;DP=133;FS=1.495;MQ=58.83;MQRankSum=4.090;QD=17.78;ReadPosRankSum=4.897;SOR=0.801	GT:AD:DP:GQ:PL	0/1:44,89:133:99:3231,0,1555
1	7890264	rs1773135	A	G	11187.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=-0.483;DB;DP=79;FS=8.527;MQ=60.00;MQRankSum=-0.109;QD=27.65;ReadPosRankSum=1.204;SOR=0.113	GT:AD:DP:GQ:PL	0/1:45,34:79:99:1215,0,1679
1	7906476	rs172932	G	T	11828.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;ClippingRankSum=-1.000;DB;DP=76;FS=0.000;MQ=60.00;MQRankSum=1.509;QD=36.88;ReadPosRankSum=1.658;SOR=0.766	GT:AD:DP:GQ:PL	1/1:1,75:76:99:3171,217,0
1	7907007	rs697694	G	A	5475.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=-0.435;DB;DP=47;FS=2.010;MQ=60.00;MQRankSum=0.891;QD=26.01;ReadPosRankSum=0.680;SOR=1.675	GT:AD:DP:GQ:PL	0/1:19,28:47:99:1032,0,613
1	7907620	rs2307550	A	ATAAT	196.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=1.264;DB;DP=19;FS=0.000;MQ=60.00;MQRankSum=1.494;QD=10.32;ReadPosRankSum=1.437;SOR=0.122	GT:AD:DP:GQ:PL	0/1:14,5:19:99:236,0,728
1	7907805	rs112820691	C	CT	665.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=1.183;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=-0.423;QD=17.05;ReadPosRankSum=-0.234;SOR=0.534	GT:AD:DP:GQ:PL	0/1:17,22:39:99:705,0,520
1	7907971	rs707473	C	A	1504.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.717;ClippingRankSum=0.644;DB;DP=39;FS=3.270;MQ=60.00;MQRankSum=0.309;QD=12.43;ReadPosRankSum=-0.159;SOR=0.307	GT:AD:DP:GQ:PL	0/1:24,15:39:99:278,0,784
1	7907984	rs4908485	A	G	599.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.548;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=1.399;QD=17.12;ReadPosRankSum=-0.256;SOR=0.842	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,120,1709
1	7913029	rs34305100	A	G	994.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.557;ClippingRankSum=-0.227;DB;DP=67;FS=0.000;MQ=60.00;MQRankSum=1.616;QD=17.14;ReadPosRankSum=1.569;SOR=0.720	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,201,2813
1	7913184	.	CA	C	733.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.221;DP=48;FS=0.704;MQ=60.24;MQRankSum=0.674;QD=4.03;ReadPosRankSum=0.112;SOR=0.573	GT:AD:DP:GQ:PL	0/1:20,28:48:99:450,0,316
1	7913430	rs228648	G	A	9800.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.981;ClippingRankSum=-2.821;DB;DP=79;FS=4.582;MQ=60.00;MQRankSum=0.136;QD=33.37;ReadPosRankSum=0.273;SOR=0.422	GT:AD:DP:GQ:PL	1/1:0,79:79:99:3427,238,0
1	7913445	rs13306061	C	T	1130.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.765;ClippingRankSum=-1.106;DB;DP=66;FS=2.433;MQ=60.00;MQRankSum=0.933;QD=14.68;ReadPosRankSum=-0.029;SOR=0.702	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,205,3055
1	7998963	rs226476	T	G	7990.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.000;MQ=60.00;QD=30.79;SOR=3.295	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2476,174,0
1	8022772	rs144768319	CAG	C	505.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.468;DB;DP=26;FS=0.000;MQ=60.13;MQRankSum=-1.305;QD=21.05;ReadPosRankSum=-0.406;SOR=0.048	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,1170
1	8022800	.	CT	C	192.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.922;ClippingRankSum=-0.786;DP=16;FS=0.000;MQ=60.12;MQRankSum=0.769;QD=2.83;ReadPosRankSum=0.854;SOR=0.169	GT:AD:DP:GQ:PL	0/0:15,1:16:26:0,26,276
1	8029319	rs41278962	A	G	280.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=-0.891;DB;DP=21;FS=0.000;MQ=60.00;MQRankSum=-0.328;QD=13.34;ReadPosRankSum=0.782;SOR=0.081	GT:AD:DP:GQ:PL	0/1:12,9:21:99:311,0,393
1	8029494	rs2641116	T	G	954.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=3.259;ClippingRankSum=0.060;DB;DP=42;FS=9.036;MQ=60.00;MQRankSum=-1.126;QD=21.20;ReadPosRankSum=1.513;SOR=1.583	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,2442
1	8029509	rs115258758	G	A	1076.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.102;ClippingRankSum=-0.312;DB;DP=36;FS=3.040;MQ=60.00;MQRankSum=0.190;QD=23.91;ReadPosRankSum=1.211;SOR=1.136	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,117,2333
1	8029510	rs56327722	G	A	1034.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=3.633;ClippingRankSum=1.878;DB;DP=35;FS=6.281;MQ=60.00;MQRankSum=0.365;QD=24.05;ReadPosRankSum=2.012;SOR=1.480	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,108,2224
1	8029644	rs35540656	CTT	C	206.43	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.715;DB;DP=13;FS=0.000;MQ=59.87;MQRankSum=0.198;QD=8.60;ReadPosRankSum=2.389;SOR=0.057	GT:AD:DP:GQ:PL	0/0:13,0:13:39:0,39,449
1	8030856	rs6703670	G	A	4243.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.006;DB;DP=50;FS=4.969;MQ=59.96;MQRankSum=0.070;QD=27.03;ReadPosRankSum=0.657;SOR=2.979	GT:AD:DP:GQ:PL	0/1:24,26:50:99:946,0,856
1	8037496	rs161807	G	A	2400.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.088;DB;DP=141;FS=3.805;MQ=60.00;MQRankSum=0.246;QD=16.90;ReadPosRankSum=0.693;SOR=1.101	GT:AD:DP:GQ:PL	0/1:72,69:141:99:2431,0,2694
1	8064578	rs72634228	A	G	735.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.988;ClippingRankSum=-0.115;DB;DP=51;FS=0.000;MQ=60.00;MQRankSum=0.525;QD=14.14;ReadPosRankSum=-1.038;SOR=0.770	GT:AD:DP:GQ:PL	0/1:30,21:51:99:766,0,1173
1	8075894	rs370812	C	T	302.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;ClippingRankSum=-0.386;DB;DP=8;FS=0.000;MQ=60.00;MQRankSum=1.517;QD=16.79;ReadPosRankSum=1.929;SOR=0.245	GT:AD:DP:GQ:PL	0/1:6,2:8:56:56,0,224
1	8384268	rs6702047	T	C	6434.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.000;MQ=60.00;QD=26.79;SOR=5.191	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2193,159,0
1	8385004	rs72635798	G	A	758.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;ClippingRankSum=-0.297;DB;DP=18;FS=1.757;MQ=60.00;MQRankSum=0.121;QD=16.50;ReadPosRankSum=1.176;SOR=1.329	GT:AD:DP:GQ:PL	0/1:10,8:18:99:292,0,379
1	8390008	rs1473497	A	G	2102.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.000;MQ=60.00;QD=27.09;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,20:20:60:835,60,0
1	8390051	rs1473496	G	A	1342.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=-0.063;DB;DP=29;FS=6.186;MQ=60.00;MQRankSum=-0.075;QD=18.91;ReadPosRankSum=-0.386;SOR=0.061	GT:AD:DP:GQ:PL	0/1:16,13:29:99:482,0,610
1	8390384	rs56125713	G	C	5330.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=-0.051;DB;DP=99;FS=3.484;MQ=60.00;MQRankSum=-0.205;QD=15.41;ReadPosRankSum=1.797;SOR=0.741	GT:AD:DP:GQ:PL	0/1:48,51:99:99:1877,0,1728
1	8390495	rs1058619	A	G	11054.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.000;MQ=60.00;QD=29.80;SOR=0.763	GT:AD:DP:GQ:PL	1/1:0,73:73:99:3084,219,0
1	8395441	rs2305016	T	C	5183.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=1.528;DB;DP=119;FS=5.084;MQ=60.00;MQRankSum=0.245;QD=17.93;ReadPosRankSum=0.698;SOR=1.207	GT:AD:DP:GQ:PL	0/1:60,59:119:99:2136,0,2206
1	8395560	rs7535752	G	T	8918.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;ClippingRankSum=1.580;DB;DP=151;FS=1.992;MQ=60.00;MQRankSum=0.391;QD=17.59;ReadPosRankSum=3.768;SOR=0.539	GT:AD:DP:GQ:PL	0/1:77,74:151:99:2680,0,2855
1	8397803	rs7520373	C	T	1110.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.152;DB;DP=69;FS=0.000;MQ=60.00;MQRankSum=-0.128;QD=16.57;ReadPosRankSum=1.589;SOR=0.557	GT:AD:DP:GQ:PL	0/0:69,0:69:99:0,208,3015
1	8404093	rs1055236	C	T	2028.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.669;DB;DP=52;FS=0.000;MQ=60.00;MQRankSum=-1.184;QD=17.79;ReadPosRankSum=2.546;SOR=0.535	GT:AD:DP:GQ:PL	0/1:33,19:52:99:674,0,1285
1	8404169	rs6685844	T	A	5457.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.00;QD=35.61;SOR=7.460	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1964,135,0
1	8415418	rs2289733	G	A	2863.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=-0.522;DB;DP=39;FS=6.953;MQ=60.00;MQRankSum=0.316;QD=17.79;ReadPosRankSum=0.211;SOR=0.353	GT:AD:DP:GQ:PL	0/1:19,20:39:99:719,0,675
1	8418644	rs11121172	C	A	11929.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.883;DB;DP=137;FS=5.305;MQ=60.00;MQRankSum=-0.385;QD=27.42;ReadPosRankSum=0.219;SOR=0.672	GT:AD:DP:GQ:PL	0/1:66,71:137:99:2811,0,5078
1	8418650	rs1058766	T	C	11963.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;ClippingRankSum=-0.319;DB;DP=131;FS=5.305;MQ=60.00;MQRankSum=-1.484;QD=27.44;ReadPosRankSum=-0.580;SOR=0.645	GT:AD:DP:GQ:PL	0/1:64,67:131:99:2741,0,5017
1	8419766	rs11581418	C	T	522.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.397;DB;DP=26;FS=0.000;MQ=60.00;MQRankSum=-1.647;QD=20.08;ReadPosRankSum=1.051;SOR=0.195	GT:AD:DP:GQ:PL	0/1:11,15:26:99:553,0,387
1	8421092	rs2784735	C	T	1217.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.804;DB;DP=81;FS=2.218;MQ=60.00;MQRankSum=-0.979;QD=15.60;ReadPosRankSum=2.517;SOR=0.921	GT:AD:DP:GQ:PL	0/0:81,0:81:99:0,241,3209
1	8421203	rs13596	T	C	7582.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=1.540;DB;DP=94;FS=0.951;MQ=60.00;MQRankSum=1.069;QD=24.30;ReadPosRankSum=1.106;SOR=0.770	GT:AD:DP:GQ:PL	0/1:42,52:94:99:1896,0,1354
1	8422676	rs2252865	T	C	5652.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;ClippingRankSum=-0.390;DB;DP=74;FS=0.000;MQ=60.00;MQRankSum=1.117;QD=20.93;ReadPosRankSum=0.638;SOR=0.656	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1430,0,1220
1	8423877	rs2289732	G	C	769.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=1.192;DB;DP=11;FS=0.000;MQ=60.00;MQRankSum=0.217;QD=19.25;ReadPosRankSum=1.110;SOR=0.793	GT:AD:DP:GQ:PL	0/1:4,7:11:99:270,0,145
1	8424039	rs9628991	C	G	3008.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=1.415;DB;DP=78;FS=0.000;MQ=60.00;MQRankSum=-0.463;QD=15.35;ReadPosRankSum=3.292;SOR=1.253	GT:AD:DP:GQ:PL	0/1:48,30:78:99:1012,0,1768
1	8424984	rs34269918	GA	G	1127.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=1.939;DB;DP=13;FS=0.000;MQ=60.42;MQRankSum=-0.335;QD=22.10;ReadPosRankSum=2.690;SOR=1.101	GT:AD:DP:GQ:PL	0/1:8,5:13:99:147,0,230
1	8425798	rs3765972	C	T	1347.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=-1.635;DB;DP=35;FS=1.576;MQ=60.00;MQRankSum=0.213;QD=14.65;ReadPosRankSum=2.394;SOR=0.423	GT:AD:DP:GQ:PL	0/1:24,11:35:99:381,0,934
1	8425900	rs3753275	T	C	3283.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;ClippingRankSum=0.738;DB;DP=63;FS=3.321;MQ=60.00;MQRankSum=0.745;QD=15.56;ReadPosRankSum=0.951;SOR=0.970	GT:AD:DP:GQ:PL	0/1:37,26:63:99:907,0,1374
1	8526142	rs4908760	G	A	5143.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;ClippingRankSum=-1.700;DB;DP=82;FS=2.952;MQ=60.00;MQRankSum=0.163;QD=18.64;ReadPosRankSum=0.404;SOR=0.508	GT:AD:DP:GQ:PL	0/1:35,47:82:99:1795,0,1213
1	8555372	rs111493554	AT	A	112.90	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.878;DB;DP=23;FS=5.208;MQ=60.26;MQRankSum=-0.073;QD=1.38;ReadPosRankSum=-0.610;SOR=2.240	GT:AD:DP:GQ:PL	0/1:17,6:23:87:87,0,331
1	8557320	rs7518608	C	G	2977.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=-1.070;DB;DP=50;FS=4.608;MQ=60.00;MQRankSum=0.846;QD=19.09;ReadPosRankSum=-0.002;SOR=1.823	GT:AD:DP:GQ:PL	0/1:27,23:50:99:842,0,1037
1	8557691	rs7530745	A	C	3145.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=-0.270;DB;DP=46;FS=0.000;MQ=60.00;MQRankSum=0.025;QD=18.73;ReadPosRankSum=2.082;SOR=0.767	GT:AD:DP:GQ:PL	0/1:15,31:46:99:1219,0,473
1	8716543	rs3737670	G	C	702.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;ClippingRankSum=1.344;DB;DP=14;FS=0.000;MQ=57.90;MQRankSum=-1.505;QD=14.35;ReadPosRankSum=0.192;SOR=0.455	GT:AD:DP:GQ:PL	0/1:7,7:14:99:223,0,238
1	8925112	rs2765507	T	C	676.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.005;ClippingRankSum=0.184;DB;DP=13;FS=0.000;MQ=60.00;MQRankSum=-0.163;QD=21.81;ReadPosRankSum=1.290;SOR=0.389	GT:AD:DP:GQ:PL	0/1:5,8:13:99:271,0,177
1	8925331	rs72641527	G	A	1825.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;ClippingRankSum=-0.356;DB;DP=49;FS=0.654;MQ=60.00;MQRankSum=0.722;QD=16.44;ReadPosRankSum=0.887;SOR=0.626	GT:AD:DP:GQ:PL	0/1:31,18:49:99:636,0,1103
1	8926285	rs28999086	A	AG	1995.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=-0.240;DB;DP=72;FS=0.000;MQ=60.04;MQRankSum=1.441;QD=12.02;ReadPosRankSum=-1.865;SOR=0.638	GT:AD:DP:GQ:PL	0/1:36,36:72:99:992,0,1024
1	8930369	rs2781060	T	C	2113.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=1.504;DB;DP=42;FS=0.935;MQ=60.00;MQRankSum=-1.060;QD=19.21;ReadPosRankSum=-0.248;SOR=0.488	GT:AD:DP:GQ:PL	0/1:20,22:42:99:839,0,716
1	8930385	rs2765511	G	A	2400.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=1.243;DB;DP=47;FS=0.786;MQ=60.00;MQRankSum=1.552;QD=19.20;ReadPosRankSum=0.907;SOR=0.550	GT:AD:DP:GQ:PL	0/1:25,22:47:99:817,0,897
1	8935149	rs2038904	A	G	992.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.605;DB;DP=37;FS=0.000;MQ=60.00;MQRankSum=1.977;QD=13.59;ReadPosRankSum=1.993;SOR=0.184	GT:AD:DP:GQ:PL	0/1:23,14:37:99:472,0,888
1	9006101	.	CT	C	20.13	INDEL_LowQualityDepth;LowQual	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.895;ClippingRankSum=0.933;DP=57;FS=0.000;MQ=61.13;MQRankSum=-3.607;QD=0.35;ReadPosRankSum=0.984;SOR=0.220	GT:AD:DP:GQ:PL	0/0:53,4:57:66:0,66,1980
1	9006104	rs5772343	T	TC	1576.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.786;DB;DP=58;FS=2.474;MQ=61.14;MQRankSum=-0.761;QD=9.98;ReadPosRankSum=4.250;SOR=0.179	GT:AD:DP:GQ:PL	0/1:25,33:58:99:718,0,728
1	9009214	rs2274326	C	T	1631.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.172;DB;DP=40;FS=0.000;MQ=60.00;MQRankSum=-0.135;QD=15.68;ReadPosRankSum=1.879;SOR=0.189	GT:AD:DP:GQ:PL	0/1:20,20:40:99:757,0,734
1	9009406	rs2274327	C	T	4277.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=1.034;DB;DP=85;FS=0.410;MQ=60.00;MQRankSum=-0.236;QD=17.46;ReadPosRankSum=1.727;SOR=0.723	GT:AD:DP:GQ:PL	0/1:34,51:85:99:1866,0,1204
1	9009444	rs2274328	A	C	7282.16	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;ClippingRankSum=0.534;DB;DP=77;FS=0.927;MQ=60.00;MQRankSum=-0.239;QD=24.77;ReadPosRankSum=-0.150;SOR=0.758	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3394,235,0
1	9009451	rs2274329	G	C	2960.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.181;ClippingRankSum=-0.048;DB;DP=77;FS=1.052;MQ=60.00;MQRankSum=-0.894;QD=18.98;ReadPosRankSum=0.338;SOR=0.611	GT:AD:DP:GQ:PL	0/1:39,38:77:99:1499,0,1503
1	9009470	rs2274330	G	C	3004.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;ClippingRankSum=1.012;DB;DP=76;FS=4.048;MQ=60.00;MQRankSum=1.281;QD=19.90;ReadPosRankSum=0.792;SOR=0.464	GT:AD:DP:GQ:PL	0/1:36,40:76:99:1569,0,1396
1	9009547	rs2274331	C	A	2155.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=1.350;DB;DP=61;FS=3.826;MQ=60.00;MQRankSum=-0.147;QD=18.26;ReadPosRankSum=0.663;SOR=1.248	GT:AD:DP:GQ:PL	0/1:32,29:61:99:1080,0,1156
1	9011537	rs7540307	G	A	6445.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.583;ClippingRankSum=2.555;DB;DP=149;FS=2.565;MQ=60.00;MQRankSum=-0.781;QD=17.90;ReadPosRankSum=1.432;SOR=0.522	GT:AD:DP:GQ:PL	0/1:67,82:149:99:3075,0,2386
1	9011586	rs3765968	T	G	12276.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.657;ClippingRankSum=1.273;DB;DP=152;FS=0.539;MQ=60.00;MQRankSum=-0.234;QD=23.52;ReadPosRankSum=-0.919;SOR=0.719	GT:AD:DP:GQ:PL	1/1:0,152:152:99:6404,457,0
1	9011627	rs3765967	G	A	4970.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.413;DB;DP=142;FS=0.613;MQ=60.00;MQRankSum=1.073;QD=17.69;ReadPosRankSum=1.136;SOR=0.773	GT:AD:DP:GQ:PL	0/1:73,69:142:99:2522,0,2615
1	9011722	rs3765966	G	T	7524.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;ClippingRankSum=2.028;DB;DP=96;FS=0.000;MQ=60.00;MQRankSum=-1.062;QD=26.04;ReadPosRankSum=1.048;SOR=0.722	GT:AD:DP:GQ:PL	1/1:0,96:96:99:4020,287,0
1	9011885	rs202101015	A	AT	350.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=-0.445;DB;DP=23;FS=0.000;MQ=60.00;MQRankSum=0.007;QD=5.65;ReadPosRankSum=0.733;SOR=0.587	GT:AD:DP:GQ:PL	0/1:12,11:23:99:226,0,247
1	9017204	rs2274333	A	G	1598.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.985;ClippingRankSum=-0.607;DB;DP=62;FS=0.000;MQ=60.00;MQRankSum=0.825;QD=16.65;ReadPosRankSum=3.084;SOR=0.594	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,186,2648
1	9030964	rs3737665	C	T	1317.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.151;DB;DP=98;FS=0.673;MQ=60.00;MQRankSum=-2.288;QD=15.14;ReadPosRankSum=-0.990;SOR=0.743	GT:AD:DP:GQ:PL	0/0:98,0:98:99:0,295,4179
1	9034301	rs72641578	T	C	979.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;ClippingRankSum=-0.636;DB;DP=82;FS=9.071;MQ=60.00;MQRankSum=-0.019;QD=11.94;ReadPosRankSum=2.094;SOR=1.665	GT:AD:DP:GQ:PL	0/1:52,30:82:99:1010,0,1950
1	9034421	rs3765964	G	A	1322.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.827;ClippingRankSum=-0.126;DB;DP=98;FS=0.000;MQ=60.00;MQRankSum=0.354;QD=14.86;ReadPosRankSum=3.130;SOR=0.709	GT:AD:DP:GQ:PL	0/0:98,0:98:99:0,294,4104
1	9034598	rs3765963	A	G	4445.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;ClippingRankSum=0.139;DB;DP=121;FS=0.000;MQ=60.00;MQRankSum=-0.384;QD=17.36;ReadPosRankSum=1.057;SOR=0.698	GT:AD:DP:GQ:PL	0/1:68,53:121:99:1928,0,2586
1	9034815	rs70985563	C	CAGA	6375.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=-0.654;DB;DP=72;FS=0.676;MQ=60.04;MQRankSum=0.509;QD=25.81;ReadPosRankSum=0.704;SOR=0.619	GT:AD:DP:GQ:PL	0/1:37,35:72:99:1358,0,1733
1	9034966	rs72641583	A	C	372.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=-0.413;DB;DP=25;FS=0.000;MQ=60.00;MQRankSum=0.494;QD=14.89;ReadPosRankSum=-0.029;SOR=0.295	GT:AD:DP:GQ:PL	0/1:14,11:25:99:403,0,516
1	9063265	rs12402611	C	T	1018.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.117;DB;DP=32;FS=2.342;MQ=60.00;MQRankSum=-0.796;QD=15.20;ReadPosRankSum=1.184;SOR=0.170	GT:AD:DP:GQ:PL	0/1:16,16:32:99:593,0,606
1	9063602	rs4908804	G	C	5106.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.604;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=0.457;QD=34.97;ReadPosRankSum=-0.254;SOR=1.220	GT:AD:DP:GQ:PL	0/1:22,20:42:99:750,0,814
1	9063646	rs4908805	T	C	1837.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.313;DB;DP=38;FS=0.000;MQ=59.93;MQRankSum=-0.985;QD=14.70;ReadPosRankSum=2.000;SOR=0.446	GT:AD:DP:GQ:PL	0/1:25,13:38:99:444,0,987
1	9064838	rs72644324	G	A	3502.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.278;ClippingRankSum=0.108;DB;DP=82;FS=0.468;MQ=60.00;MQRankSum=1.261;QD=17.60;ReadPosRankSum=1.939;SOR=0.725	GT:AD:DP:GQ:PL	0/0:82,0:82:99:0,247,3459
1	9070178	rs67090552	A	G	1407.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.038;ClippingRankSum=0.077;DB;DP=76;FS=0.000;MQ=60.00;MQRankSum=-0.082;QD=21.99;ReadPosRankSum=2.485;SOR=0.660	GT:AD:DP:GQ:PL	0/0:76,0:76:99:0,229,3276
1	9070485	rs2012842	T	A	1040.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;ClippingRankSum=-0.693;DB;DP=19;FS=2.596;MQ=59.81;MQRankSum=0.029;QD=26.00;ReadPosRankSum=-1.271;SOR=0.324	GT:AD:DP:GQ:PL	1/1:0,19:19:57:790,57,0
1	9073483	rs35277164	C	A	1621.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.433;DB;DP=36;FS=1.843;MQ=60.00;MQRankSum=-1.660;QD=19.07;ReadPosRankSum=1.741;SOR=1.125	GT:AD:DP:GQ:PL	0/1:17,19:36:99:705,0,559
1	9073801	rs7537425	C	T	4180.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;ClippingRankSum=-0.510;DB;DP=49;FS=3.228;MQ=60.00;MQRankSum=0.734;QD=23.89;ReadPosRankSum=0.923;SOR=0.424	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2124,147,0
1	9074861	rs12402973	C	T	863.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;ClippingRankSum=1.270;DB;DP=51;FS=0.965;MQ=60.00;MQRankSum=-0.304;QD=16.92;ReadPosRankSum=0.800;SOR=0.862	GT:AD:DP:GQ:PL	0/1:27,24:51:99:894,0,1009
1	9074932	rs1556757	G	A	3702.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.210;ClippingRankSum=1.243;DB;DP=41;FS=1.354;MQ=60.00;MQRankSum=-0.138;QD=23.28;ReadPosRankSum=-1.040;SOR=0.881	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1741,123,0
1	9075369	rs12410702	G	C	543.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=-1.235;DB;DP=43;FS=0.000;MQ=60.00;MQRankSum=-0.893;QD=12.63;ReadPosRankSum=-1.771;SOR=0.373	GT:AD:DP:GQ:PL	0/1:26,17:43:99:574,0,1013
1	9079154	rs12031065	C	T	3544.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=-0.166;DB;DP=68;FS=0.000;MQ=60.00;MQRankSum=-1.417;QD=18.18;ReadPosRankSum=2.617;SOR=0.811	GT:AD:DP:GQ:PL	0/1:31,37:68:99:1364,0,1083
1	9084924	rs2027222	T	C	4421.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.245;ClippingRankSum=-1.905;DB;DP=51;FS=0.000;MQ=60.00;MQRankSum=-1.041;QD=22.56;ReadPosRankSum=-0.061;SOR=0.534	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2189,153,0
1	9085006	rs148146441	G	GGCCCACCTTGT	4068.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;ClippingRankSum=0.360;DB;DP=90;FS=2.815;MQ=59.19;MQRankSum=0.041;QD=18.58;ReadPosRankSum=-2.535;SOR=0.533	GT:AD:DP:GQ:PL	0/1:44,46:90:99:2170,0,1684
1	9107849	rs3737661	G	T	1182.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.271;DB;DP=61;FS=0.000;MQ=59.86;MQRankSum=-1.716;QD=19.38;ReadPosRankSum=1.777;SOR=0.630	GT:AD:DP:GQ:PL	0/1:28,33:61:99:1213,0,917
1	9117351	.	TA	T	125.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;ClippingRankSum=-0.323;DP=9;FS=0.000;MQ=59.98;MQRankSum=0.968;QD=3.31;ReadPosRankSum=0.710;SOR=0.473	GT:AD:DP:GQ:PL	0/1:5,4:9:60:60,0,69
1	9117371	rs11121310	A	G	615.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;ClippingRankSum=-0.080;DB;DP=16;FS=0.000;MQ=59.99;MQRankSum=0.770;QD=11.20;ReadPosRankSum=2.575;SOR=0.184	GT:AD:DP:GQ:PL	0/1:4,12:16:2:324,0,2
1	9129867	rs3820034	G	A	1521.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.021;DB;DP=34;FS=2.913;MQ=60.00;MQRankSum=0.582;QD=19.50;ReadPosRankSum=0.953;SOR=1.744	GT:AD:DP:GQ:PL	0/1:18,16:34:99:602,0,652
1	9165685	rs72637739	G	A	4834.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.194;ClippingRankSum=-0.546;DB;DP=96;FS=0.419;MQ=60.00;MQRankSum=1.571;QD=21.30;ReadPosRankSum=2.409;SOR=0.652	GT:AD:DP:GQ:PL	0/1:41,55:96:99:2094,0,1452
1	9165818	rs12753196	C	A	2349.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.581;ClippingRankSum=-0.647;DB;DP=57;FS=3.011;MQ=60.00;MQRankSum=-1.460;QD=17.53;ReadPosRankSum=-0.262;SOR=1.247	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,171,2383
1	9165868	rs1705303	A	G	5804.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=60.00;QD=26.81;SOR=8.439	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1981,138,0
1	9171238	rs12135666	G	T	3013.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=1.146;DB;DP=89;FS=4.274;MQ=60.00;MQRankSum=-0.482;QD=15.94;ReadPosRankSum=1.575;SOR=1.011	GT:AD:DP:GQ:PL	0/1:45,44:89:99:1608,0,1672
1	9189324	.	G	GTACCCCGGCCTTTAAGCCCCGCCTACATTCCCCGCCCCGCCCCGCCGTCCCGGGCCCTGAGCCCCGCCCACGCGCCGCACCCCGCCCCTC	153.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.198;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.922;QD=21.88;ReadPosRankSum=-1.495;SOR=0.892	GT:AD:DP:GQ:PL	0/1:2,0:2:0:30,0,0
1	9299947	rs2268176	T	G	1274.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.925;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-0.526;QD=15.73;ReadPosRankSum=0.354;SOR=0.706	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1500
1	9304978	rs139855605	CCCCAGGCA	C	1198.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.211;ClippingRankSum=1.497;DB;DP=71;FS=3.179;MQ=60.00;MQRankSum=-1.449;QD=18.43;ReadPosRankSum=-0.510;SOR=1.358	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,213,6547
1	9305445	rs34603401	A	C	6143.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;ClippingRankSum=-1.480;DB;DP=183;FS=0.567;MQ=59.98;MQRankSum=-0.674;QD=15.67;ReadPosRankSum=-0.763;SOR=0.799	GT:AD:DP:GQ:PL	0/1:99,84:183:99:3073,0,3738
1	9306849	rs2310925	T	C	5316.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.096;DB;DP=77;FS=0.000;MQ=60.00;MQRankSum=1.067;QD=27.55;ReadPosRankSum=2.879;SOR=0.377	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,232,3320
1	9307033	rs7524046	G	A	6101.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.595;DB;DP=115;FS=0.000;MQ=60.00;MQRankSum=0.166;QD=19.01;ReadPosRankSum=1.015;SOR=0.703	GT:AD:DP:GQ:PL	0/0:115,0:115:99:0,348,4799
1	9307138	rs11121350	T	C	3853.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.014;ClippingRankSum=0.117;DB;DP=100;FS=2.385;MQ=59.92;MQRankSum=-0.151;QD=16.61;ReadPosRankSum=1.222;SOR=0.526	GT:AD:DP:GQ:PL	0/0:100,0:100:99:0,301,4285
1	9307230	rs12032814	T	A	2840.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.261;DB;DP=53;FS=0.000;MQ=60.11;MQRankSum=-1.474;QD=19.32;ReadPosRankSum=0.851;SOR=0.749	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,159,2223
1	9323463	rs141143158	C	CTGAGGCAG	2122.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;ClippingRankSum=0.154;DB;DP=51;FS=7.889;MQ=60.07;MQRankSum=0.361;QD=17.54;ReadPosRankSum=-1.433;SOR=2.556	GT:AD:DP:GQ:PL	0/1:27,24:51:99:1042,0,2530
1	9323910	rs6688832	G	A	6737.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.342;ClippingRankSum=-0.267;DB;DP=174;FS=0.000;MQ=60.00;MQRankSum=2.260;QD=16.84;ReadPosRankSum=2.271;SOR=0.710	GT:AD:DP:GQ:PL	0/0:174,0:174:99:0,524,7491
1	9324213	rs17368528	C	T	6738.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.125;ClippingRankSum=-1.553;DB;DP=164;FS=0.540;MQ=60.00;MQRankSum=0.545;QD=17.97;ReadPosRankSum=3.156;SOR=0.748	GT:AD:DP:GQ:PL	0/1:87,77:164:99:2829,0,3282
1	9324571	rs9434742	T	C	10611.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.566;ClippingRankSum=1.198;DB;DP=168;FS=15.246;MQ=59.97;MQRankSum=-0.994;QD=18.30;ReadPosRankSum=0.067;SOR=1.516	GT:AD:DP:GQ:PL	0/1:98,70:168:99:2551,0,3653
1	9324670	rs9434743	A	G	7465.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.723;ClippingRankSum=-0.507;DB;DP=129;FS=4.780;MQ=60.00;MQRankSum=-0.537;QD=16.06;ReadPosRankSum=1.426;SOR=1.038	GT:AD:DP:GQ:PL	0/1:75,54:129:99:1962,0,2683
1	9331244	rs1138467	T	C	52.12	PASS	AC=0;AF=0.00;AN=0;BaseQRankSum=-1.231;ClippingRankSum=0.358;DB;DP=5;FS=0.000;MQ=53.85;MQRankSum=-1.231;QD=13.03;ReadPosRankSum=-0.358;SOR=1.179	GT	./.
1	9331277	rs9435163	G	T	92.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.322;DB;DP=1;FS=5.441;MQ=58.15;MQRankSum=0.322;QD=23.03;ReadPosRankSum=-0.322;SOR=0.061	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	9331331	rs9435164	A	T	82.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.573;DB;DP=3;FS=5.441;MQ=60.00;MQRankSum=-1.001;QD=16.51;ReadPosRankSum=0.248;SOR=0.045	GT:AD:DP:GQ:PL	0/1:1,2:3:36:76,0,36
1	9331492	rs55935885	G	A	30.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.762;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.067;QD=4.42;ReadPosRankSum=-1.179;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,1:2:39:39,0,39
1	9331535	rs7522207	G	A	56.87	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.572;ClippingRankSum=-1.589;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=0.572;QD=28.44;ReadPosRankSum=1.067;SOR=0.693	GT:AD:DP:GQ:PL	0/0:3,0:3:9:0,9,133
1	9353015	.	CGCCGGG	C	185.69	PASS	AC=2;AF=1.00;AN=2;DP=3;FS=0.000;MQ=62.13;QD=33.00;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
1	9416852	rs12760778	A	G	1787.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;ClippingRankSum=0.054;DB;DP=42;FS=1.438;MQ=60.00;MQRankSum=-0.017;QD=17.35;ReadPosRankSum=1.019;SOR=1.091	GT:AD:DP:GQ:PL	0/1:20,22:42:99:817,0,716
1	9627521	rs6698575	A	G	4777.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=0.905;DB;DP=82;FS=4.927;MQ=60.00;MQRankSum=-0.029;QD=17.76;ReadPosRankSum=2.117;SOR=0.446	GT:AD:DP:GQ:PL	0/1:37,45:82:99:1571,0,1327
1	9642329	rs56026893	C	T	4251.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.150;ClippingRankSum=0.822;DB;DP=93;FS=2.288;MQ=60.00;MQRankSum=0.218;QD=14.56;ReadPosRankSum=1.808;SOR=0.553	GT:AD:DP:GQ:PL	0/1:49,44:93:99:1598,0,1795
1	9655795	rs4073710	G	A	2751.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.580;DB;DP=43;FS=4.562;MQ=60.00;MQRankSum=-1.304;QD=19.11;ReadPosRankSum=1.412;SOR=1.794	GT:AD:DP:GQ:PL	0/1:22,21:43:99:782,0,771
1	9658465	rs9430181	T	G	3484.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=-0.431;DB;DP=61;FS=1.899;MQ=60.00;MQRankSum=-1.717;QD=16.36;ReadPosRankSum=-0.473;SOR=0.981	GT:AD:DP:GQ:PL	0/1:37,24:61:99:859,0,1410
1	9658707	rs9430182	G	A	2639.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.967;DB;DP=43;FS=2.943;MQ=60.00;MQRankSum=0.531;QD=15.44;ReadPosRankSum=0.814;SOR=0.340	GT:AD:DP:GQ:PL	0/1:28,15:43:99:517,0,1056
1	9661061	rs9430184	A	G	3576.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;ClippingRankSum=-0.657;DB;DP=61;FS=3.053;MQ=60.00;MQRankSum=-0.107;QD=17.45;ReadPosRankSum=0.949;SOR=0.212	GT:AD:DP:GQ:PL	0/1:34,27:61:99:910,0,1277
1	9668027	rs12411122	G	A	754.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.729;DB;DP=44;FS=3.072;MQ=60.00;MQRankSum=0.867;QD=17.14;ReadPosRankSum=2.042;SOR=0.129	GT:AD:DP:GQ:PL	0/1:23,21:44:99:785,0,842
1	9670483	rs4244632	T	A	3192.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=-2.315;DB;DP=71;FS=0.630;MQ=60.00;MQRankSum=1.095;QD=15.96;ReadPosRankSum=1.223;SOR=0.617	GT:AD:DP:GQ:PL	0/1:36,35:71:99:1196,0,1330
1	9670834	rs4926472	C	T	3223.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.662;DB;DP=61;FS=5.425;MQ=60.00;MQRankSum=0.855;QD=17.52;ReadPosRankSum=1.824;SOR=0.402	GT:AD:DP:GQ:PL	0/1:34,27:61:99:926,0,1245
1	9671257	.	CT	C	821.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.334;ClippingRankSum=-0.639;DP=25;FS=13.981;MQ=60.25;MQRankSum=0.456;QD=6.27;ReadPosRankSum=-0.887;SOR=2.908	GT:AD:DP:GQ:PL	0/1:13,12:25:99:173,0,249
1	9770690	.	C	CAG	491.08	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.555;ClippingRankSum=-0.555;DP=30;FS=14.390;MQ=60.00;MQRankSum=0.213;QD=8.93;ReadPosRankSum=-1.532;SOR=0.020	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,984
1	9770714	rs72633865	C	G	610.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.050;DB;DP=47;FS=15.245;MQ=60.00;MQRankSum=-0.062;QD=12.45;ReadPosRankSum=2.892;SOR=0.019	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1979
1	9776339	rs3934934	A	G	297.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.329;DB;DP=39;FS=9.372;MQ=59.74;MQRankSum=0.670;QD=10.61;ReadPosRankSum=0.341;SOR=2.921	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1665
1	9776686	rs200867219	G	T	194.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.244;ClippingRankSum=-1.072;DB;DP=25;FS=0.000;MQ=60.00;MQRankSum=0.160;QD=16.18;ReadPosRankSum=1.368;SOR=0.941	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,1051
1	9777586	rs28730669	G	C	1187.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.498;ClippingRankSum=0.395;DB;DP=52;FS=13.995;MQ=60.00;MQRankSum=2.057;QD=17.46;ReadPosRankSum=1.675;SOR=0.134	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,2178
1	9779871	rs9430220	T	C	1520.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.057;ClippingRankSum=-1.430;DB;DP=61;FS=13.630;MQ=60.00;MQRankSum=0.741;QD=19.74;ReadPosRankSum=1.680;SOR=0.025	GT:AD:DP:GQ:PL	0/0:61,0:61:99:0,183,2557
1	9781412	rs12735071	C	G	8333.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.638;ClippingRankSum=-1.176;DB;DP=69;FS=2.492;MQ=60.00;MQRankSum=-0.848;QD=29.15;ReadPosRankSum=0.402;SOR=0.636	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2994,208,0
1	9782556	rs11589267	C	T	10480.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.191;DB;DP=78;FS=0.622;MQ=60.00;MQRankSum=0.981;QD=29.83;ReadPosRankSum=2.898;SOR=0.775	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3349,234,0
1	9782766	rs10864435	C	T	1051.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.101;ClippingRankSum=0.232;DB;DP=50;FS=0.000;MQ=60.00;MQRankSum=-1.844;QD=18.77;ReadPosRankSum=1.450;SOR=0.761	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2113
1	9783805	rs72633870	G	A	1272.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.230;DB;DP=30;FS=4.112;MQ=60.00;MQRankSum=-0.460;QD=15.14;ReadPosRankSum=0.478;SOR=0.197	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1308
1	9784423	rs11121484	C	T	2003.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.030;ClippingRankSum=-0.615;DB;DP=136;FS=0.000;MQ=60.00;MQRankSum=-1.734;QD=15.65;ReadPosRankSum=2.438;SOR=0.769	GT:AD:DP:GQ:PL	0/0:136,0:136:99:0,409,5731
1	9790660	rs72633874	T	C	1221.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.482;DB;DP=66;FS=0.000;MQ=60.00;MQRankSum=-0.091;QD=16.28;ReadPosRankSum=0.328;SOR=0.711	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,198,2846
1	9792105	rs36067873	G	GA	10009.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.877;ClippingRankSum=-0.414;DB;DP=112;FS=0.000;MQ=60.05;MQRankSum=0.182;QD=24.84;ReadPosRankSum=-1.800;SOR=6.184	GT:AD:DP:GQ:PL	1/1:3,109:112:99:3019,252,0
1	9793968	rs79566275	A	G	920.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.274;ClippingRankSum=-0.220;DB;DP=48;FS=2.891;MQ=60.00;MQRankSum=-0.614;QD=20.45;ReadPosRankSum=-0.516;SOR=0.146	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,2053
1	9796038	rs72633875	C	T	5986.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.664;ClippingRankSum=0.573;DB;DP=139;FS=0.544;MQ=60.00;MQRankSum=-0.101;QD=18.31;ReadPosRankSum=2.535;SOR=0.735	GT:AD:DP:GQ:PL	0/0:139,0:139:99:0,417,5959
1	9804719	rs72633876	G	A	3007.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.716;ClippingRankSum=-0.062;DB;DP=70;FS=16.127;MQ=60.00;MQRankSum=1.163;QD=17.90;ReadPosRankSum=0.413;SOR=0.048	GT:AD:DP:GQ:PL	0/0:69,1:70:99:0,165,2967
1	9816620	rs6680090	T	C	9974.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;FS=0.000;MQ=59.93;QD=30.06;SOR=1.034	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2893,212,0
1	9883878	rs6686034	T	C	1254.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.000;MQ=60.00;QD=27.98;SOR=4.548	GT:AD:DP:GQ:PL	1/1:0,13:13:39:552,39,0
1	10001235	rs137978085	TTTCG	T	6769.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.000;MQ=60.39;QD=33.43;SOR=4.076	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2099,142,0
1	10027540	rs2890358	G	A	3013.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=60.00;QD=34.33;SOR=3.706	GT:AD:DP:GQ:PL	1/1:0,22:22:66:964,66,0
1	10035473	rs6657844	T	C	1427.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MQ=60.00;QD=30.80;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,16:16:48:672,48,0
1	10041298	.	AT	A	72.16	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.540;DP=50;FS=2.416;MQ=60.00;MQRankSum=0.158;QD=0.45;ReadPosRankSum=0.677;SOR=1.073	GT:AD:DP:GQ:PL	0/1:42,8:50:46:46,0,953
1	10068175	rs11578833	G	A	2556.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.104;ClippingRankSum=-0.277;DB;DP=44;FS=1.350;MQ=60.00;MQRankSum=-1.005;QD=23.24;ReadPosRankSum=2.098;SOR=0.871	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1863,132,0
1	10189532	rs72638958	A	G	3406.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.007;ClippingRankSum=-1.108;DB;DP=77;FS=5.883;MQ=60.00;MQRankSum=0.067;QD=15.92;ReadPosRankSum=1.017;SOR=1.043	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,230,3230
1	10190884	rs2295294	A	T	9415.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.354;ClippingRankSum=-0.050;DB;DP=87;FS=2.899;MQ=60.00;MQRankSum=-0.416;QD=32.13;ReadPosRankSum=-0.048;SOR=0.959	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3691,261,0
1	10204791	rs138304003	T	TA	429.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=-0.504;DB;DP=14;FS=0.000;MQ=60.07;MQRankSum=-0.400;QD=8.42;ReadPosRankSum=-0.156;SOR=1.483	GT:AD:DP:GQ:PL	0/1:2,12:14:5:228,0,5
1	10318652	rs12402052	C	G	2245.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.875;ClippingRankSum=1.071;DB;DP=55;FS=3.666;MQ=60.00;MQRankSum=-0.409;QD=18.56;ReadPosRankSum=2.641;SOR=0.465	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,165,2367
1	10322054	rs4846209	G	A	3882.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.214;DB;DP=85;FS=6.403;MQ=60.00;MQRankSum=0.302;QD=17.65;ReadPosRankSum=0.456;SOR=0.776	GT:AD:DP:GQ:PL	0/0:85,0:85:99:0,255,3579
1	10322153	rs4846210	A	G	3817.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.232;ClippingRankSum=-0.084;DB;DP=74;FS=2.430;MQ=60.00;MQRankSum=-1.162;QD=19.09;ReadPosRankSum=0.767;SOR=0.516	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,222,3144
1	10327407	rs12141246	A	T	2078.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.364;DB;DP=50;FS=9.998;MQ=59.85;MQRankSum=-1.316;QD=17.03;ReadPosRankSum=1.164;SOR=2.374	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2165
1	10327867	rs12141416	A	G	1156.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.512;DB;DP=27;FS=0.000;MQ=59.69;MQRankSum=-0.785;QD=19.93;ReadPosRankSum=-0.903;SOR=0.446	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1150
1	10328338	rs1339458	C	T	1899.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.082;ClippingRankSum=1.397;DB;DP=36;FS=7.114;MQ=60.00;MQRankSum=0.200;QD=18.62;ReadPosRankSum=0.355;SOR=0.212	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1576
1	10334924	rs17396973	C	T	1212.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.340;DB;DP=33;FS=6.073;MQ=60.00;MQRankSum=-0.418;QD=13.62;ReadPosRankSum=2.055;SOR=0.226	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1369
1	10335315	rs6685773	G	A	9206.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.000;MQ=60.00;QD=32.05;SOR=2.855	GT:AD:DP:GQ:PL	1/1:0,72:72:99:3100,216,0
1	10339209	rs35347635	CAT	C	4134.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.684;DB;DP=97;FS=5.051;MQ=60.19;MQRankSum=1.599;QD=17.08;ReadPosRankSum=1.840;SOR=1.006	GT:AD:DP:GQ:PL	0/0:97,0:97:99:0,292,4401
1	10342352	rs3748575	C	T	1437.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.176;DB;DP=33;FS=1.302;MQ=59.78;MQRankSum=-2.384;QD=19.96;ReadPosRankSum=-0.468;SOR=0.925	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1401
1	10342629	rs3748576	G	A	1208.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.427;ClippingRankSum=-0.812;DB;DP=29;FS=0.000;MQ=60.00;MQRankSum=0.469;QD=19.81;ReadPosRankSum=0.486;SOR=0.577	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,1213
1	10355834	rs3753037	C	T	3653.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.943;ClippingRankSum=0.176;DB;DP=47;FS=0.000;MQ=60.00;MQRankSum=-0.785;QD=21.00;ReadPosRankSum=2.258;SOR=0.655	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,2027
1	10356028	rs34437412	T	TG	876.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.156;ClippingRankSum=-0.752;DB;DP=38;FS=0.000;MQ=60.22;MQRankSum=0.552;QD=15.11;ReadPosRankSum=-0.485;SOR=0.642	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1484
1	10356562	rs2275424	C	A	870.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.504;ClippingRankSum=-0.918;DB;DP=12;FS=0.000;MQ=60.00;MQRankSum=-0.409;QD=18.51;ReadPosRankSum=-0.224;SOR=1.112	GT:AD:DP:GQ:PL	0/0:12,0:12:36:0,36,533
1	10356848	rs912961	A	G	2474.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.047;ClippingRankSum=-0.225;DB;DP=60;FS=2.586;MQ=60.00;MQRankSum=1.391;QD=15.66;ReadPosRankSum=1.043;SOR=0.509	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,181,2630
1	10357206	.	AT	A	313.88	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;ClippingRankSum=-0.250;DP=51;FS=2.504;MQ=60.21;MQRankSum=2.342;QD=1.51;ReadPosRankSum=-0.790;SOR=1.181	GT:AD:DP:GQ:PL	0/1:39,12:51:99:126,0,737
1	10357406	rs3748577	A	G	589.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.587;ClippingRankSum=1.380;DB;DP=14;FS=0.000;MQ=60.00;MQRankSum=-0.479;QD=15.11;ReadPosRankSum=0.629;SOR=0.779	GT:AD:DP:GQ:PL	0/0:14,0:14:42:0,42,610
1	10384176	rs200163420	C	CTTGAAA	3834.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.894;ClippingRankSum=-0.886;DB;DP=77;FS=5.301;MQ=60.05;MQRankSum=0.792;QD=25.06;ReadPosRankSum=-1.846;SOR=0.369	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,232,6615
1	10394536	rs2276100	C	G	3782.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.259;ClippingRankSum=-1.065;DB;DP=101;FS=2.180;MQ=60.00;MQRankSum=0.022;QD=15.96;ReadPosRankSum=0.352;SOR=0.563	GT:AD:DP:GQ:PL	0/0:100,1:101:99:0,258,4202
1	10402009	.	CA	C	237.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=-1.429;DP=7;FS=3.245;MQ=60.00;MQRankSum=-0.204;QD=6.79;ReadPosRankSum=2.001;SOR=1.942	GT:AD:DP:GQ:PL	0/1:4,3:7:47:47,0,72
1	10403482	rs1556916	G	A	2400.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.615;ClippingRankSum=-1.196;DB;DP=34;FS=11.330;MQ=60.00;MQRankSum=-1.518;QD=20.00;ReadPosRankSum=-0.574;SOR=3.123	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,101,1389
1	10408837	.	AT	A	36.13	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=2.905;ClippingRankSum=-0.526;DP=33;FS=0.000;MQ=60.00;MQRankSum=0.303;QD=0.44;ReadPosRankSum=0.802;SOR=0.281	GT:AD:DP:GQ:PL	0/1:28,5:33:33:33,0,577
1	10420918	rs3748578	G	A	4371.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.088;ClippingRankSum=1.552;DB;DP=102;FS=2.058;MQ=60.00;MQRankSum=0.913;QD=16.68;ReadPosRankSum=0.669;SOR=0.846	GT:AD:DP:GQ:PL	0/0:102,0:102:99:0,313,7335
1	10420937	rs3748579	C	T	4924.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.181;ClippingRankSum=0.576;DB;DP=105;FS=0.410;MQ=60.00;MQRankSum=-0.045;QD=18.44;ReadPosRankSum=-0.697;SOR=0.735	GT:AD:DP:GQ:PL	0/0:105,0:105:99:0,319,7420
1	10425117	rs34161257	AT	A	1087.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.116;DB;DP=48;FS=1.303;MQ=60.19;MQRankSum=-1.094;QD=9.06;ReadPosRankSum=-0.740;SOR=0.417	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,1492
1	10428452	rs12130563	G	A	1419.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.172;DB;DP=34;FS=2.597;MQ=60.00;MQRankSum=-0.430;QD=16.70;ReadPosRankSum=2.360;SOR=1.249	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1467
1	10431158	rs17411502	T	C	2407.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.651;ClippingRankSum=1.105;DB;DP=56;FS=5.825;MQ=60.00;MQRankSum=1.001;QD=17.07;ReadPosRankSum=1.327;SOR=1.192	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,168,2402
1	10435170	rs11121551	T	C	3761.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.313;ClippingRankSum=-1.170;DB;DP=85;FS=7.974;MQ=60.00;MQRankSum=1.522;QD=18.53;ReadPosRankSum=-0.513;SOR=0.387	GT:AD:DP:GQ:PL	0/0:85,0:85:99:0,254,3555
1	10435324	rs11121552	C	A	2325.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.295;ClippingRankSum=-1.437;DB;DP=60;FS=0.000;MQ=60.00;MQRankSum=0.691;QD=16.49;ReadPosRankSum=2.754;SOR=0.675	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,180,2512
1	10459779	rs3737155	G	A	2491.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.290;DB;DP=64;FS=9.445;MQ=60.00;MQRankSum=0.564;QD=19.93;ReadPosRankSum=0.822;SOR=1.931	GT:AD:DP:GQ:PL	0/0:64,0:64:99:0,193,2790
1	10460485	rs1049887	T	C	2157.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.279;DB;DP=50;FS=0.000;MQ=57.53;MQRankSum=0.930;QD=18.60;ReadPosRankSum=-0.300;SOR=0.786	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,151,2192
1	10460716	.	A	AT	772.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.290;ClippingRankSum=-1.227;DP=36;FS=0.000;MQ=60.00;MQRankSum=-0.878;QD=6.18;ReadPosRankSum=0.469;SOR=0.620	GT:AD:DP:GQ:PL	0/0:34,2:36:54:0,54,865
1	10468005	.	CA	C	240.88	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.011;DP=56;FS=5.531;MQ=60.12;MQRankSum=-1.034;QD=0.91;ReadPosRankSum=1.037;SOR=0.328	GT:AD:DP:GQ:PL	0/1:44,12:56:87:87,0,909
1	10471789	rs2236678	A	T	2286.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.849;ClippingRankSum=-0.826;DB;DP=37;FS=3.866;MQ=60.00;MQRankSum=0.112;QD=19.88;ReadPosRankSum=-1.556;SOR=0.112	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1591
1	10473196	rs2229687	C	T	4450.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.777;ClippingRankSum=1.083;DB;DP=98;FS=0.935;MQ=60.00;MQRankSum=-0.435;QD=17.18;ReadPosRankSum=0.061;SOR=0.759	GT:AD:DP:GQ:PL	0/0:98,0:98:99:0,294,4080
1	10478830	.	C	CA	241.88	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.098;ClippingRankSum=-0.659;DP=20;FS=3.099;MQ=59.59;MQRankSum=0.342;QD=3.31;ReadPosRankSum=1.708;SOR=0.144	GT:AD:DP:GQ:PL	0/0:18,2:20:23:0,23,229
1	10479635	rs2298570	C	G	6747.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.007;DB;DP=190;FS=0.000;MQ=60.00;MQRankSum=1.773;QD=15.65;ReadPosRankSum=-0.135;SOR=0.713	GT:AD:DP:GQ:PL	0/0:190,0:190:99:0,571,8042
1	10479678	rs1889309	G	A	6896.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.473;ClippingRankSum=1.807;DB;DP=175;FS=1.922;MQ=60.00;MQRankSum=-1.050;QD=15.64;ReadPosRankSum=-0.130;SOR=0.572	GT:AD:DP:GQ:PL	0/0:175,0:175:99:0,525,7482
1	10490285	rs649639	T	C	619.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=-0.808;DB;DP=6;FS=4.607;MQ=59.04;MQRankSum=1.294;QD=23.81;ReadPosRankSum=0.108;SOR=2.833	GT:AD:DP:GQ:PL	0/1:4,2:6:71:71,0,151
1	10490759	rs143754643	TTGGCTTAAC	T	1699.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;ClippingRankSum=-0.272;DB;DP=16;FS=0.000;MQ=60.00;MQRankSum=0.140;QD=27.85;ReadPosRankSum=0.305;SOR=1.162	GT:AD:DP:GQ:PL	0/1:8,8:16:99:312,0,603
1	10490789	rs6662684	G	C	1507.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.680;DB;DP=16;FS=5.441;MQ=60.00;MQRankSum=0.136;QD=26.44;ReadPosRankSum=-0.763;SOR=3.306	GT:AD:DP:GQ:PL	0/1:8,8:16:99:291,0,288
1	10502307	rs33919161	AT	A	4284.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.14;QD=27.12;SOR=6.763	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1123,117,0
1	10503000	rs10864455	A	G	108.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=57.76;QD=29.12;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
1	10511330	rs3838398	AT	A	688.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.587;DB;DP=32;FS=5.149;MQ=60.00;MQRankSum=1.221;QD=9.30;ReadPosRankSum=-0.293;SOR=0.046	GT:AD:DP:GQ:PL	0/1:16,16:32:99:358,0,356
1	10511544	rs628462	C	T	2016.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=-0.265;DB;DP=74;FS=0.000;MQ=60.00;MQRankSum=-0.150;QD=14.40;ReadPosRankSum=-0.189;SOR=0.700	GT:AD:DP:GQ:PL	0/1:42,32:74:99:1129,0,1554
1	10511589	rs666103	T	C	8188.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.000;MQ=60.00;QD=31.77;SOR=3.367	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2870,204,0
1	10512056	rs1307497	T	C	61.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=30.94;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
1	10529194	rs2781233	T	C	2002.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.114;DB;DP=64;FS=3.329;MQ=60.00;MQRankSum=-0.475;QD=14.83;ReadPosRankSum=-0.713;SOR=1.325	GT:AD:DP:GQ:PL	0/1:38,26:64:99:905,0,1420
1	10534915	rs72640366	A	G	3114.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.432;ClippingRankSum=0.297;DB;DP=82;FS=4.617;MQ=60.00;MQRankSum=-0.545;QD=16.14;ReadPosRankSum=2.447;SOR=0.992	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1728,0,1297
1	10555257	rs622623	C	T	1491.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.987;DB;DP=47;FS=7.919;MQ=60.00;MQRankSum=-1.214;QD=15.06;ReadPosRankSum=1.747;SOR=1.408	GT:AD:DP:GQ:PL	0/1:28,19:47:99:690,0,1028
1	10596086	rs56053695	A	C	2087.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.082;ClippingRankSum=1.129;DB;DP=49;FS=0.000;MQ=60.00;MQRankSum=0.362;QD=19.33;ReadPosRankSum=0.486;SOR=0.581	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2070
1	10596341	rs12375	C	T	3783.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;ClippingRankSum=1.459;DB;DP=88;FS=4.987;MQ=60.00;MQRankSum=1.329;QD=18.10;ReadPosRankSum=3.013;SOR=1.045	GT:AD:DP:GQ:PL	0/1:50,38:88:99:1374,0,1897
1	10596388	rs2480779	A	G	9122.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;FS=0.000;MQ=60.00;QD=30.44;SOR=5.333	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2933,212,0
1	10702266	rs117131266	G	A	243.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=1.566;DB;DP=6;FS=0.000;MQ=60.00;MQRankSum=0.770;QD=11.58;ReadPosRankSum=2.151;SOR=0.602	GT:AD:DP:GQ:PL	0/1:3,3:6:76:116,0,76
1	10702307	.	G	A	728.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.560;DP=20;FS=4.674;MQ=60.00;MQRankSum=0.064;QD=22.07;ReadPosRankSum=1.312;SOR=0.238	GT:AD:DP:GQ:PL	0/0:20,0:20:60:0,60,744
1	10702402	.	GA	G	50.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=-0.876;DP=3;FS=0.000;MQ=60.00;MQRankSum=-2.219;QD=2.32;ReadPosRankSum=0.361;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,1:3:2:2,0,25
1	10703198	rs72641445	A	T	612.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.737;ClippingRankSum=-0.879;DB;DP=59;FS=2.243;MQ=60.00;MQRankSum=0.627;QD=9.72;ReadPosRankSum=-0.927;SOR=0.415	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,176,2341
1	10704888	rs4845940	G	C	1584.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=-0.026;DB;DP=31;FS=1.889;MQ=60.00;MQRankSum=1.225;QD=19.32;ReadPosRankSum=0.911;SOR=1.307	GT:AD:DP:GQ:PL	0/1:17,14:31:99:502,0,652
1	10705110	rs4845941	G	A	3438.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=1.084;DB;DP=79;FS=1.034;MQ=60.00;MQRankSum=-1.646;QD=19.21;ReadPosRankSum=3.110;SOR=0.794	GT:AD:DP:GQ:PL	0/1:40,39:79:99:1435,0,1489
1	10708142	rs778228	A	G	4455.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;ClippingRankSum=-0.907;DB;DP=107;FS=3.147;MQ=60.00;MQRankSum=0.045;QD=18.11;ReadPosRankSum=1.437;SOR=0.870	GT:AD:DP:GQ:PL	0/1:50,57:107:99:2097,0,1821
1	10710849	rs35751856	G	GC	2216.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=-0.185;DB;DP=79;FS=8.509;MQ=60.23;MQRankSum=0.256;QD=11.42;ReadPosRankSum=-0.059;SOR=1.117	GT:AD:DP:GQ:PL	0/1:47,32:79:99:889,0,1413
1	10713765	rs284294	T	C	22285.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;ClippingRankSum=-1.136;DB;DP=195;FS=0.712;MQ=60.00;MQRankSum=-0.086;QD=34.50;ReadPosRankSum=-1.389;SOR=0.750	GT:AD:DP:GQ:PL	1/1:0,195:195:99:8127,583,0
1	10714330	rs56016164	A	AC	5828.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=2.375;DB;DP=158;FS=2.572;MQ=60.07;MQRankSum=-0.777;QD=16.94;ReadPosRankSum=-1.735;SOR=0.886	GT:AD:DP:GQ:PL	0/1:67,91:158:99:2983,0,2016
1	10714436	rs35604552	C	T	5471.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.886;ClippingRankSum=-0.813;DB;DP=141;FS=0.570;MQ=60.00;MQRankSum=0.363;QD=17.94;ReadPosRankSum=0.785;SOR=0.727	GT:AD:DP:GQ:PL	0/0:141,0:141:99:0,423,5959
1	10718398	rs28716527	C	T	2087.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.493;DB;DP=55;FS=0.000;MQ=60.00;MQRankSum=1.230;QD=18.64;ReadPosRankSum=1.080;SOR=0.900	GT:AD:DP:GQ:PL	0/1:23,32:55:99:1205,0,742
1	10719645	rs475980	A	G	6973.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.598;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=-0.066;QD=32.58;ReadPosRankSum=0.518;SOR=0.978	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2390,169,0
1	10720601	rs28403334	G	A	4062.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.673;ClippingRankSum=-0.484;DB;DP=88;FS=1.046;MQ=60.00;MQRankSum=-0.625;QD=19.34;ReadPosRankSum=3.133;SOR=0.782	GT:AD:DP:GQ:PL	0/1:42,46:88:99:1747,0,1535
1	10725498	rs284322	G	A	3617.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=-0.061;DB;DP=82;FS=12.156;MQ=60.00;MQRankSum=-0.638;QD=17.91;ReadPosRankSum=3.504;SOR=1.437	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1586,0,1510
1	10856513	rs3059010	TG	T	150.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=-0.491;DB;DP=10;FS=1.992;MQ=60.00;MQRankSum=-0.548;QD=15.05;ReadPosRankSum=-1.819;SOR=0.840	GT:AD:DP:GQ:PL	0/1:5,5:10:99:190,0,310
1	10856517	rs1107018	G	A	159.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;ClippingRankSum=-0.953;DB;DP=10;FS=1.992;MQ=60.00;MQRankSum=0.722;QD=15.95;ReadPosRankSum=-1.357;SOR=0.840	GT:AD:DP:GQ:PL	0/1:5,5:10:99:190,0,310
1	11006569	rs2275490	G	A	148.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.731;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.731;QD=21.13;ReadPosRankSum=0.731;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
1	11008341	rs10864483	G	A	3842.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.290;ClippingRankSum=-1.254;DB;DP=190;FS=2.549;MQ=60.00;MQRankSum=0.872;QD=21.46;ReadPosRankSum=-1.066;SOR=0.957	GT:AD:DP:GQ:PL	0/0:190,0:190:99:0,570,8036
1	11016942	rs11121660	C	T	53.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.081;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=0.584;QD=2.80;ReadPosRankSum=-0.584;SOR=0.478	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1324
1	11016986	rs12030736	A	G	317.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.937;ClippingRankSum=1.255;DB;DP=40;FS=1.328;MQ=60.00;MQRankSum=-0.452;QD=10.23;ReadPosRankSum=1.364;SOR=0.403	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1671
1	11017026	rs12041143	C	A	519.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.106;DB;DP=53;FS=2.133;MQ=60.00;MQRankSum=-1.543;QD=12.98;ReadPosRankSum=2.723;SOR=1.024	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,158,2177
1	11017551	rs12030940	A	G	517.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.058;DB;DP=22;FS=0.000;MQ=59.94;MQRankSum=0.579;QD=15.67;ReadPosRankSum=-0.811;SOR=0.034	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,977
1	11018573	rs12077098	G	A	1150.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.104;ClippingRankSum=1.007;DB;DP=58;FS=3.043;MQ=60.00;MQRankSum=0.517;QD=14.38;ReadPosRankSum=2.826;SOR=0.132	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,174,2536
1	11018580	rs72644034	G	A	2365.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.585;DB;DP=60;FS=0.000;MQ=60.00;MQRankSum=0.534;QD=16.66;ReadPosRankSum=1.571;SOR=0.538	GT:AD:DP:GQ:PL	0/1:35,25:60:99:913,0,1319
1	11024271	rs11121662	G	T	1837.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.165;DB;DP=92;FS=0.560;MQ=60.00;MQRankSum=-0.375;QD=18.37;ReadPosRankSum=3.214;SOR=0.743	GT:AD:DP:GQ:PL	0/0:92,0:92:99:0,276,3878
1	11024353	rs6659231	A	G	978.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.617;DB;DP=90;FS=2.825;MQ=60.00;MQRankSum=0.255;QD=13.97;ReadPosRankSum=-0.857;SOR=0.425	GT:AD:DP:GQ:PL	0/0:90,0:90:99:0,271,3879
1	11024381	rs6659326	A	G	722.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.278;DB;DP=73;FS=5.660;MQ=60.00;MQRankSum=0.314;QD=14.16;ReadPosRankSum=0.934;SOR=0.179	GT:AD:DP:GQ:PL	0/0:73,0:73:99:0,222,3258
1	11024395	rs11121663	T	C	763.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.872;ClippingRankSum=-0.822;DB;DP=65;FS=7.338;MQ=60.00;MQRankSum=0.010;QD=15.90;ReadPosRankSum=0.447;SOR=0.118	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,198,2892
1	11072885	rs62920960	C	T	381.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MQ=60.00;QD=28.62;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,4:4:12:138,12,0
1	11075511	rs9430338	T	C	169.73	PASS	AC=0;AF=0.00;AN=0;DB;DP=5;FS=0.000;MQ=60.00;QD=33.95;SOR=1.981	GT	./.
1	11075726	rs138019858	C	CA	150.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=60.00;QD=18.85;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,3:3:9:79,9,0
1	11079077	rs2273348	A	G	3717.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.000;MQ=60.00;QD=29.39;SOR=6.736	GT:AD:DP:GQ:PL	1/1:0,19:19:57:789,57,0
1	11080723	rs70977536	T	TG	2495.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MQ=54.11;QD=33.73;SOR=4.834	GT:AD:DP:GQ:PL	1/1:0,23:23:69:820,69,0
1	11082054	rs3835416	AG	A	4685.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.000;MQ=60.27;QD=34.26;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1616,120,0
1	11086097	rs3215616	A	AT	5307.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.22;QD=34.31;SOR=2.127	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1421,114,0
1	11086439	rs2261695	C	T	354.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MQ=60.00;QD=32.42;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
1	11086717	rs1033638	A	G	1370.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.000;MQ=60.00;QD=31.98;SOR=7.168	GT:AD:DP:GQ:PL	1/1:0,12:12:36:515,36,0
1	11087524	rs1782455	G	A	17538.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;FS=0.000;MQ=60.00;QD=33.85;SOR=0.867	GT:AD:DP:GQ:PL	1/1:0,122:122:99:5178,366,0
1	11087835	rs1782454	T	C	4716.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=60.00;QD=29.82;SOR=7.240	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1333,93,0
1	11090916	rs12711521	C	A	7569.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MQ=60.00;QD=27.74;SOR=4.162	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2101,144,0
1	11094665	rs11121684	G	A	4099.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MQ=59.72;QD=32.20;SOR=5.871	GT:AD:DP:GQ:PL	1/1:0,23:23:69:955,69,0
1	11094757	rs70977538	G	GA,GAA	1510.70	PASS	AC=1,0;AF=0.500,0.00;AN=2;BaseQRankSum=-0.779;ClippingRankSum=-0.804;DB;DP=24;FS=0.000;MQ=59.87;MQRankSum=-1.552;QD=13.25;ReadPosRankSum=-1.502;SOR=0.582	GT:AD:DP:GQ:PL	0/1:5,14,5:24:13:323,0,66,183,13,345
1	11095039	rs6695096	C	T	5206.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.000;MQ=60.00;QD=31.32;SOR=2.814	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1716,122,0
1	11104845	rs9430347	T	C	4861.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.619;ClippingRankSum=-1.617;DB;DP=39;FS=5.992;MQ=60.00;MQRankSum=-1.849;QD=34.23;ReadPosRankSum=0.810;SOR=1.676	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1704,117,0
1	11105106	rs2273345	C	T	8993.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.823;ClippingRankSum=-0.606;DB;DP=74;FS=9.316;MQ=60.00;MQRankSum=-2.622;QD=25.26;ReadPosRankSum=1.529;SOR=0.257	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3311,223,0
1	11105122	rs2273344	C	T	9032.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.675;ClippingRankSum=-1.392;DB;DP=74;FS=14.478;MQ=60.00;MQRankSum=1.616;QD=23.19;ReadPosRankSum=1.784;SOR=0.602	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3348,226,0
1	11106909	rs66761147	C	T	1631.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.339;ClippingRankSum=-0.051;DB;DP=99;FS=2.011;MQ=60.00;MQRankSum=1.362;QD=16.48;ReadPosRankSum=2.965;SOR=0.895	GT:AD:DP:GQ:PL	0/1:54,45:99:99:1662,0,1985
1	11106935	rs72647262	G	A	4394.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.287;ClippingRankSum=1.078;DB;DP=110;FS=4.959;MQ=60.00;MQRankSum=0.221;QD=17.72;ReadPosRankSum=1.097;SOR=0.685	GT:AD:DP:GQ:PL	0/0:110,0:110:99:0,329,4588
1	11107439	rs7548659	G	T	838.24	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.349;ClippingRankSum=1.397;DB;DP=5;FS=4.649;MQ=60.00;MQRankSum=-0.698;QD=33.53;ReadPosRankSum=-0.873;SOR=3.033	GT:AD:DP:GQ:PL	1/1:0,5:5:15:189,15,0
1	11115177	.	C	CT	81.37	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=1.164;DP=7;FS=4.467;MQ=60.00;MQRankSum=-1.164;QD=1.27;ReadPosRankSum=0.648;SOR=1.546	GT:AD:DP:GQ:PL	0/1:6,1:7:1:1,0,61
1	11119899	rs7545802	T	C	6274.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.00;QD=32.87;SOR=5.507	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1708,117,0
1	11126490	rs2748879	A	G	3091.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.394;ClippingRankSum=-1.226;DB;DP=27;FS=0.000;MQ=54.21;MQRankSum=-3.770;QD=33.26;ReadPosRankSum=-0.097;SOR=0.892	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1167,81,0
1	11126517	rs2791660	C	T	3185.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.310;ClippingRankSum=-1.234;DB;DP=24;FS=0.000;MQ=57.01;MQRankSum=-2.097;QD=27.44;ReadPosRankSum=-0.261;SOR=1.107	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1032,72,0
1	11126569	rs2791659	C	A	4433.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.682;ClippingRankSum=1.603;DB;DP=22;FS=3.787;MQ=60.00;MQRankSum=0.056;QD=27.71;ReadPosRankSum=-0.230;SOR=2.548	GT:AD:DP:GQ:PL	1/1:0,22:22:66:962,66,0
1	11126941	rs6701726	C	T	3759.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.424;ClippingRankSum=1.801;DB;DP=31;FS=2.356;MQ=60.00;MQRankSum=-0.028;QD=32.41;ReadPosRankSum=-0.134;SOR=0.311	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1343,93,0
1	11128001	rs2791657	A	G	4864.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.558;DB;DP=43;FS=4.208;MQ=60.00;MQRankSum=-0.436;QD=23.67;ReadPosRankSum=-0.180;SOR=2.770	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1834,129,0
1	11128329	rs2791656	A	G	3831.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.633;ClippingRankSum=-0.989;DB;DP=39;FS=5.452;MQ=60.00;MQRankSum=-0.120;QD=32.60;ReadPosRankSum=-1.083;SOR=3.489	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1666,117,0
1	11128654	rs2791655	G	A	4766.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=-0.418;DB;DP=51;FS=1.050;MQ=60.00;MQRankSum=0.993;QD=28.89;ReadPosRankSum=1.580;SOR=1.014	GT:AD:DP:GQ:PL	0/1:23,28:51:99:1085,0,786
1	11129848	rs2791653	A	G	6411.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;ClippingRankSum=-0.621;DB;DP=45;FS=11.686;MQ=60.00;MQRankSum=1.141;QD=29.05;ReadPosRankSum=1.415;SOR=2.681	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1917,135,0
1	11132217	rs1130683	G	A	5294.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;ClippingRankSum=1.569;DB;DP=41;FS=12.315;MQ=60.00;MQRankSum=1.093;QD=34.59;ReadPosRankSum=2.162;SOR=0.335	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1743,123,0
1	11134157	rs2748876	T	G	10272.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.491;DB;DP=84;FS=0.640;MQ=60.00;MQRankSum=-0.305;QD=28.61;ReadPosRankSum=1.563;SOR=0.805	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3607,252,0
1	11134470	.	AT	A	46.77	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.885;ClippingRankSum=1.438;DP=48;FS=9.637;MQ=60.00;MQRankSum=0.257;QD=0.34;ReadPosRankSum=-2.542;SOR=0.029	GT:AD:DP:GQ:PL	0/0:43,5:48:12:0,12,942
1	11137778	rs2259886	C	T	4301.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.139;ClippingRankSum=-0.999;DB;DP=37;FS=4.950;MQ=60.00;MQRankSum=0.691;QD=33.87;ReadPosRankSum=1.777;SOR=3.150	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1579,111,0
1	11140621	.	AC	A	379.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;ClippingRankSum=1.461;DP=4;FS=6.284;MQ=58.32;MQRankSum=-2.604;QD=6.44;ReadPosRankSum=3.281;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,4:4:12:145,12,0
1	11140623	.	ACAC	A	160.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=-0.546;DP=5;FS=6.893;MQ=58.35;MQRankSum=-1.516;QD=4.33;ReadPosRankSum=3.658;SOR=2.765	GT:AD:DP:GQ:PL	0/1:4,1:5:16:16,0,26
1	11141187	rs2258621	C	G	10576.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.194;ClippingRankSum=-0.209;DB;DP=77;FS=2.066;MQ=60.00;MQRankSum=0.222;QD=28.42;ReadPosRankSum=1.102;SOR=0.528	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3255,231,0
1	11151779	rs1148482	A	G	3113.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.904;DB;DP=35;FS=3.427;MQ=60.00;MQRankSum=-1.768;QD=33.12;ReadPosRankSum=-0.982;SOR=2.291	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1507,105,0
1	11181327	rs11121691	C	T	1967.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.226;ClippingRankSum=-0.450;DB;DP=107;FS=6.752;MQ=60.00;MQRankSum=-0.230;QD=18.56;ReadPosRankSum=0.042;SOR=1.285	GT:AD:DP:GQ:PL	0/0:107,0:107:99:0,321,4587
1	11181475	rs199572003	T	C	1114.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.269;DB;DP=88;FS=0.000;MQ=60.00;MQRankSum=-0.920;QD=13.59;ReadPosRankSum=1.875;SOR=0.673	GT:AD:DP:GQ:PL	0/0:88,0:88:99:0,264,3720
1	11187893	rs1770344	T	C	7032.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.000;MQ=60.00;QD=37.85;SOR=2.360	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2063,141,0
1	11190646	rs2275527	G	A	1878.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.208;ClippingRankSum=-0.442;DB;DP=108;FS=1.176;MQ=59.93;MQRankSum=0.051;QD=17.72;ReadPosRankSum=-1.020;SOR=0.575	GT:AD:DP:GQ:PL	0/0:108,0:108:99:0,324,4592
1	11205058	rs1057079	C	T	10557.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.168;ClippingRankSum=-0.419;DB;DP=102;FS=0.661;MQ=60.00;MQRankSum=0.062;QD=27.41;ReadPosRankSum=1.523;SOR=0.778	GT:AD:DP:GQ:PL	1/1:0,102:102:99:4351,306,0
1	11288618	rs4845985	G	A	4218.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.826;DB;DP=35;FS=0.000;MQ=60.00;MQRankSum=2.272;QD=33.75;ReadPosRankSum=0.346;SOR=0.954	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1514,105,0
1	11288633	rs4845986	G	C	4645.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.615;ClippingRankSum=1.725;DB;DP=40;FS=2.606;MQ=60.00;MQRankSum=-1.253;QD=33.18;ReadPosRankSum=0.030;SOR=1.230	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1710,120,0
1	11288758	rs1064261	G	A	9081.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.945;DB;DP=74;FS=8.786;MQ=60.00;MQRankSum=0.982;QD=33.02;ReadPosRankSum=0.734;SOR=0.264	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3029,220,0
1	11292666	rs10864495	T	A	2203.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.111;ClippingRankSum=1.006;DB;DP=19;FS=2.374;MQ=60.00;MQRankSum=-1.216;QD=33.38;ReadPosRankSum=-0.061;SOR=0.293	GT:AD:DP:GQ:PL	1/1:0,19:19:57:797,57,0
1	11294474	rs718206	T	A	5508.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.831;ClippingRankSum=-0.212;DB;DP=47;FS=0.000;MQ=60.00;MQRankSum=0.034;QD=34.86;ReadPosRankSum=-0.922;SOR=3.064	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2051,141,0
1	11297762	rs7524202	T	C	5273.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.612;ClippingRankSum=-0.371;DB;DP=45;FS=2.093;MQ=59.87;MQRankSum=-0.116;QD=32.96;ReadPosRankSum=0.089;SOR=1.038	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1841,134,0
1	11298790	rs2024627	T	C	2711.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.326;ClippingRankSum=2.233;DB;DP=26;FS=0.000;MQ=60.10;MQRankSum=-0.124;QD=31.16;ReadPosRankSum=-0.456;SOR=0.843	GT:AD:DP:GQ:PL	1/1:0,26:26:77:985,77,0
1	11298823	rs61689672	C	CT	189.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.923;DB;DP=8;FS=0.000;MQ=60.05;MQRankSum=-1.385;QD=4.22;ReadPosRankSum=-0.718;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,6:8:28:110,0,28
1	11301714	rs1135172	A	G	7896.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;ClippingRankSum=1.227;DB;DP=53;FS=6.807;MQ=60.00;MQRankSum=-0.025;QD=34.33;ReadPosRankSum=0.894;SOR=0.330	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2232,159,0
1	11315903	.	C	CA	263.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=-1.467;DP=17;FS=0.000;MQ=59.45;MQRankSum=-0.512;QD=5.87;ReadPosRankSum=-1.604;SOR=1.329	GT:AD:DP:GQ:PL	0/1:9,8:17:85:95,0,85
1	11317320	rs2092642	C	T	3999.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.271;ClippingRankSum=1.150;DB;DP=29;FS=0.000;MQ=59.98;MQRankSum=-1.142;QD=33.61;ReadPosRankSum=-0.410;SOR=0.487	GT:AD:DP:GQ:PL	1/1:0,29:29:86:1183,86,0
1	11318236	rs7525957	C	T	2410.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.579;DB;DP=25;FS=0.000;MQ=60.16;MQRankSum=2.272;QD=34.93;ReadPosRankSum=0.258;SOR=1.132	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1072,75,0
1	11318763	rs2076657	C	G	3415.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.953;ClippingRankSum=1.962;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=-0.710;QD=34.50;ReadPosRankSum=0.895;SOR=3.103	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1207,84,0
1	11319587	rs4845988	A	G	5922.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.103;ClippingRankSum=-0.670;DB;DP=55;FS=1.138;MQ=60.00;MQRankSum=-0.296;QD=34.84;ReadPosRankSum=0.346;SOR=0.517	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2300,165,0
1	11561593	rs2817580	G	A	6663.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.039;ClippingRankSum=1.343;DB;DP=83;FS=0.420;MQ=60.00;MQRankSum=-0.731;QD=30.85;ReadPosRankSum=1.715;SOR=0.662	GT:AD:DP:GQ:PL	0/0:83,0:83:99:0,250,3588
1	11574366	rs10864515	C	G	3272.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.373;DB;DP=75;FS=16.334;MQ=60.00;MQRankSum=-0.784;QD=17.31;ReadPosRankSum=2.964;SOR=0.211	GT:AD:DP:GQ:PL	0/1:40,35:75:99:1149,0,1386
1	11575260	rs17036947	G	T	1506.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870;ClippingRankSum=-0.943;DB;DP=40;FS=9.143;MQ=60.00;MQRankSum=-1.053;QD=16.20;ReadPosRankSum=0.100;SOR=0.030	GT:AD:DP:GQ:PL	0/1:21,19:40:99:614,0,776
1	11575331	rs41274530	A	G	3318.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.885;ClippingRankSum=0.782;DB;DP=70;FS=1.576;MQ=60.00;MQRankSum=1.550;QD=19.87;ReadPosRankSum=1.779;SOR=0.410	GT:AD:DP:GQ:PL	0/1:35,35:70:99:1338,0,1243
1	11575375	rs2594318	T	A	4455.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.599;ClippingRankSum=-0.395;DB;DP=71;FS=8.788;MQ=60.00;MQRankSum=2.330;QD=26.21;ReadPosRankSum=1.345;SOR=0.236	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,213,3016
1	11579358	rs199949410	T	A	839.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.049;DB;DP=48;FS=0.000;MQ=59.99;MQRankSum=-1.216;QD=17.48;ReadPosRankSum=2.053;SOR=0.312	GT:AD:DP:GQ:PL	0/1:24,24:48:99:870,0,865
1	11579470	rs2072994	G	A	9589.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.217;ClippingRankSum=-0.396;DB;DP=77;FS=27.167;MQ=60.00;MQRankSum=0.989;QD=35.00;ReadPosRankSum=-0.592;SOR=0.059	GT:AD:DP:GQ:PL	0/1:42,35:77:99:1183,0,1567
1	11579608	rs34563951	G	A	3968.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.704;ClippingRankSum=-0.239;DB;DP=83;FS=2.049;MQ=60.00;MQRankSum=0.026;QD=19.84;ReadPosRankSum=-0.011;SOR=0.837	GT:AD:DP:GQ:PL	0/0:83,0:83:99:0,249,3504
1	11593793	rs58291557	T	TGCACACACGCAC	7930.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.000;MQ=62.58;QD=30.21;SOR=2.436	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2680,180,0
1	11594400	rs2235663	T	C	1048.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=-2.165;DB;DP=48;FS=1.120;MQ=60.00;MQRankSum=1.145;QD=21.84;ReadPosRankSum=0.461;SOR=0.833	GT:AD:DP:GQ:PL	0/1:19,29:48:99:1079,0,684
1	11595038	rs2076467	A	G	1579.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.922;DB;DP=100;FS=10.851;MQ=60.00;MQRankSum=-1.154;QD=15.79;ReadPosRankSum=0.634;SOR=1.497	GT:AD:DP:GQ:PL	0/1:53,47:100:99:1610,0,1927
1	11595203	rs2235662	A	G	424.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;ClippingRankSum=0.652;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=-0.382;QD=10.10;ReadPosRankSum=0.646;SOR=0.785	GT:AD:DP:GQ:PL	0/1:28,14:42:99:455,0,1062
1	11595517	rs72636810	C	G	979.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.740;ClippingRankSum=0.570;DB;DP=71;FS=19.160;MQ=60.00;MQRankSum=1.325;QD=18.83;ReadPosRankSum=2.380;SOR=0.084	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,214,3017
1	11708736	rs1055547	T	C	5920.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.325;ClippingRankSum=-0.564;DB;DP=70;FS=8.603;MQ=60.00;MQRankSum=-0.564;QD=24.87;ReadPosRankSum=0.809;SOR=0.945	GT:AD:DP:GQ:PL	1/1:0,70:70:99:3019,211,0
1	11709051	rs56192923	A	AG	2252.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.296;ClippingRankSum=1.556;DB;DP=26;FS=0.000;MQ=59.66;MQRankSum=0.811;QD=19.41;ReadPosRankSum=-1.633;SOR=0.773	GT:AD:DP:GQ:PL	1/1:0,26:26:77:1157,77,0
1	11709339	rs2272984	C	T	309.17	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.540;DB;DP=9;FS=4.398;MQ=60.00;MQRankSum=0.489;QD=17.18;ReadPosRankSum=0.077;SOR=1.927	GT:AD:DP:GQ:PL	0/0:9,0:9:27:0,27,398
1	11714368	rs2272983	T	G	1063.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.449;DB;DP=23;FS=1.371;MQ=60.00;MQRankSum=2.010;QD=23.64;ReadPosRankSum=0.732;SOR=0.454	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1000,69,0
1	11714981	rs7514966	A	G	238.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=34.01;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
1	11718195	rs3125816	A	G	1338.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=1.001;DB;DP=23;FS=0.000;MQ=60.00;MQRankSum=0.025;QD=18.33;ReadPosRankSum=1.915;SOR=0.643	GT:AD:DP:GQ:PL	0/1:10,13:23:99:471,0,360
1	11724092	rs3125813	G	C	91.98	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.358;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.358;QD=30.66;ReadPosRankSum=1.231;SOR=0.223	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,44
1	11728894	rs3125818	G	A	4635.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;ClippingRankSum=1.690;DB;DP=119;FS=1.283;MQ=57.52;MQRankSum=0.336;QD=17.62;ReadPosRankSum=1.959;SOR=0.769	GT:AD:DP:GQ:PL	0/1:55,64:119:99:2313,0,1990
1	11731177	rs744115	G	C	1130.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.751;ClippingRankSum=-0.626;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=1.528;QD=17.94;ReadPosRankSum=2.758;SOR=0.190	GT:AD:DP:GQ:PL	0/1:17,15:32:99:553,0,615
1	11731927	rs3215521	AG	A	854.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=-0.972;DB;DP=44;FS=2.501;MQ=60.14;MQRankSum=-0.388;QD=8.29;ReadPosRankSum=0.614;SOR=1.241	GT:AD:DP:GQ:PL	0/1:26,18:44:99:408,0,622
1	11734049	rs1063301	C	G	2451.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.012;DB;DP=67;FS=0.000;MQ=60.00;MQRankSum=1.180;QD=18.29;ReadPosRankSum=0.427;SOR=0.731	GT:AD:DP:GQ:PL	0/1:33,34:67:99:1253,0,1224
1	11734293	rs1140272	A	G	113.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=-1.246;DB;DP=5;FS=0.000;MQ=56.29;MQRankSum=-1.034;QD=14.24;ReadPosRankSum=0.278;SOR=0.330	GT:AD:DP:GQ:PL	0/1:2,3:5:69:115,0,69
1	11735262	rs2233027	C	T	3276.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.831;ClippingRankSum=0.392;DB;DP=55;FS=5.668;MQ=60.00;MQRankSum=0.118;QD=26.22;ReadPosRankSum=-0.164;SOR=0.260	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2346,165,0
1	11735652	rs2233025	G	A	2961.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.067;ClippingRankSum=-0.473;DB;DP=87;FS=0.000;MQ=60.00;MQRankSum=-0.713;QD=16.73;ReadPosRankSum=0.901;SOR=0.705	GT:AD:DP:GQ:PL	0/0:87,0:87:99:0,261,3737
1	11735841	rs2233024	C	A	8066.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.175;ClippingRankSum=0.801;DB;DP=107;FS=2.627;MQ=60.00;MQRankSum=2.018;QD=28.40;ReadPosRankSum=1.447;SOR=0.575	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4602,321,0
1	11735877	rs2233022	A	G	4499.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.613;ClippingRankSum=-0.418;DB;DP=107;FS=2.296;MQ=60.00;MQRankSum=-0.214;QD=16.07;ReadPosRankSum=-1.703;SOR=0.577	GT:AD:DP:GQ:PL	0/0:107,0:107:99:0,321,4592
1	11737051	rs2294638	G	C	8769.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.157;DB;DP=63;FS=2.653;MQ=60.00;MQRankSum=2.098;QD=27.15;ReadPosRankSum=0.819;SOR=0.444	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2528,188,0
1	11740358	rs7417320	A	G	14302.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.250;ClippingRankSum=-0.454;DB;DP=121;FS=3.503;MQ=59.94;MQRankSum=-0.458;QD=27.05;ReadPosRankSum=1.665;SOR=1.092	GT:AD:DP:GQ:PL	1/1:0,121:121:99:5270,364,0
1	11766889	rs12132907	A	G	1445.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.435;DB;DP=38;FS=1.263;MQ=60.00;MQRankSum=0.709;QD=22.23;ReadPosRankSum=-0.586;SOR=0.434	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1585
1	11771988	rs17037327	A	G	5617.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.296;DB;DP=79;FS=3.578;MQ=59.96;MQRankSum=-0.514;QD=16.97;ReadPosRankSum=3.557;SOR=0.779	GT:AD:DP:GQ:PL	0/1:47,32:79:99:1138,0,1751
1	11772229	rs60437934	A	G	1795.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.905;DB;DP=105;FS=1.906;MQ=60.00;MQRankSum=-0.252;QD=17.77;ReadPosRankSum=0.517;SOR=0.540	GT:AD:DP:GQ:PL	0/0:105,0:105:99:0,316,4558
1	11772303	rs1883574	A	G	7366.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=-0.453;DB;DP=87;FS=6.116;MQ=60.00;MQRankSum=0.640;QD=24.64;ReadPosRankSum=-0.447;SOR=0.433	GT:AD:DP:GQ:PL	0/1:51,36:87:99:1172,0,1858
1	11772340	rs2336034	G	A	5692.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.784;DB;DP=93;FS=0.872;MQ=60.00;MQRankSum=-0.240;QD=17.96;ReadPosRankSum=0.895;SOR=0.618	GT:AD:DP:GQ:PL	0/1:49,44:93:99:1576,0,1787
1	11779499	rs4846028	T	C	5244.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.000;MQ=60.00;QD=24.65;SOR=3.433	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1765,120,0
1	11779762	rs12117076	C	T	7058.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.722;DB;DP=75;FS=1.032;MQ=60.00;MQRankSum=-0.001;QD=27.04;ReadPosRankSum=0.110;SOR=0.615	GT:AD:DP:GQ:PL	0/1:36,39:75:99:1530,0,1273
1	11779770	rs72638653	G	C	1445.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.592;DB;DP=80;FS=1.367;MQ=60.00;MQRankSum=0.426;QD=18.06;ReadPosRankSum=2.578;SOR=0.539	GT:AD:DP:GQ:PL	0/1:39,41:80:99:1476,0,2907
1	11782506	rs34219540	T	C	7040.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.753;ClippingRankSum=-0.477;DB;DP=91;FS=0.443;MQ=60.00;MQRankSum=1.561;QD=23.86;ReadPosRankSum=-0.305;SOR=0.651	GT:AD:DP:GQ:PL	0/1:51,40:91:99:1422,0,1888
1	11782781	rs7533583	G	C	3066.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.490;DB;DP=72;FS=4.713;MQ=60.00;MQRankSum=-0.097;QD=17.52;ReadPosRankSum=-0.176;SOR=1.089	GT:AD:DP:GQ:PL	0/1:41,31:72:99:1108,0,1560
1	11782814	rs7414943	G	A	5112.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;ClippingRankSum=-0.219;DB;DP=72;FS=6.321;MQ=60.00;MQRankSum=1.597;QD=23.13;ReadPosRankSum=0.805;SOR=0.366	GT:AD:DP:GQ:PL	0/1:32,40:72:99:1506,0,1156
1	11782886	rs6540990	C	T	651.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.306;ClippingRankSum=-1.671;DB;DP=16;FS=3.245;MQ=60.00;MQRankSum=1.096;QD=8.58;ReadPosRankSum=0.234;SOR=2.200	GT:AD:DP:GQ:PL	1/1:1,15:16:21:313,21,0
1	11796168	rs146190997	CGGGCG	C	6159.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.000;MQ=60.88;QD=35.77;SOR=5.406	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1604,112,0
1	11807426	rs12752700	C	T	6625.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;ClippingRankSum=-0.959;DB;DP=97;FS=6.824;MQ=60.00;MQRankSum=0.585;QD=28.93;ReadPosRankSum=3.746;SOR=0.437	GT:AD:DP:GQ:PL	1/1:0,97:97:99:4141,292,0
1	11808706	rs11121819	T	G	1038.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.748;DB;DP=58;FS=0.000;MQ=60.00;MQRankSum=0.139;QD=17.90;ReadPosRankSum=-0.287;SOR=0.820	GT:AD:DP:GQ:PL	0/1:28,30:58:99:1069,0,1029
1	11824242	rs4845876	A	C	1536.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.419;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=0.089;QD=16.34;ReadPosRankSum=1.437;SOR=0.629	GT:AD:DP:GQ:PL	0/1:21,17:38:99:575,0,790
1	11824303	rs4845877	T	C	1865.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=1.048;DB;DP=43;FS=10.103;MQ=60.00;MQRankSum=-1.082;QD=15.54;ReadPosRankSum=0.555;SOR=1.666	GT:AD:DP:GQ:PL	0/1:21,22:43:99:759,0,738
1	11824346	rs4845878	G	A	2127.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=-0.519;DB;DP=57;FS=8.911;MQ=60.00;MQRankSum=-1.419;QD=16.11;ReadPosRankSum=-0.081;SOR=1.370	GT:AD:DP:GQ:PL	0/1:28,29:57:99:1026,0,934
1	11824556	rs4845879	A	G	2143.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;ClippingRankSum=-0.879;DB;DP=53;FS=0.000;MQ=60.00;MQRankSum=-0.962;QD=18.48;ReadPosRankSum=0.889;SOR=0.618	GT:AD:DP:GQ:PL	0/1:28,25:53:99:930,0,1027
1	11824575	rs10864536	T	C	1616.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=-0.163;DB;DP=45;FS=0.000;MQ=60.00;MQRankSum=2.028;QD=17.01;ReadPosRankSum=-0.540;SOR=0.368	GT:AD:DP:GQ:PL	0/1:26,19:45:99:720,0,1508
1	11824578	rs11121825	C	T	1622.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.549;DB;DP=44;FS=2.853;MQ=60.00;MQRankSum=1.417;QD=17.44;ReadPosRankSum=-1.081;SOR=0.176	GT:AD:DP:GQ:PL	0/1:25,19:44:99:720,0,1508
1	11824621	rs11121826	T	C	1126.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=-2.289;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=0.103;QD=13.90;ReadPosRankSum=2.271;SOR=0.438	GT:AD:DP:GQ:PL	0/1:23,16:39:99:590,0,896
1	11825851	rs10218813	G	C	4133.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=-0.582;DB;DP=42;FS=1.678;MQ=60.00;MQRankSum=-1.503;QD=30.39;ReadPosRankSum=1.493;SOR=0.379	GT:AD:DP:GQ:PL	0/1:16,26:42:99:1026,0,581
1	11826630	rs6668699	C	T	10173.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=2.386;DB;DP=138;FS=0.631;MQ=60.00;MQRankSum=1.300;QD=24.51;ReadPosRankSum=0.094;SOR=0.640	GT:AD:DP:GQ:PL	0/1:76,62:138:99:2227,0,2769
1	11827180	rs6540995	A	G	19804.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;FS=0.000;MQ=60.00;QD=30.23;SOR=0.843	GT:AD:DP:GQ:PL	1/1:0,162:162:99:6840,486,0
1	11827304	rs6540996	A	G	17567.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;FS=0.000;MQ=60.00;QD=32.20;SOR=1.909	GT:AD:DP:GQ:PL	1/1:0,118:118:99:5129,355,0
1	11827355	rs6540997	A	G	6824.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.664;DB;DP=97;FS=1.267;MQ=60.00;MQRankSum=-0.447;QD=24.37;ReadPosRankSum=2.080;SOR=0.592	GT:AD:DP:GQ:PL	0/1:55,42:97:99:1490,0,1968
1	11828238	rs4845880	G	A	7965.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;ClippingRankSum=0.530;DB;DP=79;FS=6.657;MQ=60.00;MQRankSum=-0.432;QD=28.35;ReadPosRankSum=0.440;SOR=0.410	GT:AD:DP:GQ:PL	0/1:37,42:79:99:1476,0,1325
1	11828319	rs4845881	G	A	7927.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=1.214;DB;DP=90;FS=1.561;MQ=60.00;MQRankSum=0.780;QD=28.01;ReadPosRankSum=0.391;SOR=0.801	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1588,0,1783
1	11829155	rs41275454	C	T	1383.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.278;DB;DP=88;FS=6.438;MQ=60.00;MQRankSum=1.411;QD=20.64;ReadPosRankSum=1.664;SOR=2.133	GT:AD:DP:GQ:PL	0/0:88,0:88:99:0,264,3749
1	11831543	rs72638684	C	T	2657.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.105;DB;DP=65;FS=3.839;MQ=60.00;MQRankSum=0.409;QD=17.71;ReadPosRankSum=0.557;SOR=1.001	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,195,2706
1	11831615	rs6667720	C	T	7464.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.575;DB;DP=72;FS=6.175;MQ=60.00;MQRankSum=-1.077;QD=27.34;ReadPosRankSum=-0.734;SOR=0.639	GT:AD:DP:GQ:PL	0/1:42,30:72:99:1063,0,1587
1	11831756	rs6680385	A	G	5870.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=-1.218;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=0.032;QD=27.30;ReadPosRankSum=1.222;SOR=0.674	GT:AD:DP:GQ:PL	0/1:26,30:56:99:1134,0,964
1	11832100	rs11121827	T	A	1530.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=-0.041;DB;DP=43;FS=6.529;MQ=60.00;MQRankSum=-0.070;QD=15.30;ReadPosRankSum=0.458;SOR=0.302	GT:AD:DP:GQ:PL	0/1:28,15:43:99:487,0,1062
1	11832289	rs61773952	C	A	1629.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=1.387;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=-0.651;QD=23.61;ReadPosRankSum=0.540;SOR=0.732	GT:AD:DP:GQ:PL	0/1:9,23:32:99:897,0,300
1	11832311	rs10779764	G	C	1170.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=-1.497;DB;DP=31;FS=4.953;MQ=60.00;MQRankSum=0.174;QD=15.00;ReadPosRankSum=0.444;SOR=2.044	GT:AD:DP:GQ:PL	0/1:21,10:31:99:336,0,793
1	11835455	rs72638698	T	G	2845.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.289;ClippingRankSum=-1.475;DB;DP=80;FS=1.951;MQ=60.00;MQRankSum=-1.621;QD=18.24;ReadPosRankSum=1.427;SOR=0.542	GT:AD:DP:GQ:PL	0/0:80,0:80:99:0,240,3416
1	11835556	rs41275456	C	T	2543.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.312;DB;DP=63;FS=6.996;MQ=60.00;MQRankSum=-0.709;QD=14.53;ReadPosRankSum=1.789;SOR=1.162	GT:AD:DP:GQ:PL	0/0:63,0:63:99:0,188,2625
1	11836441	rs6699669	T	C	12871.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.000;MQ=60.00;QD=31.11;SOR=2.246	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3900,264,0
1	11836442	rs6659541	G	A	3604.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=1.667;DB;DP=88;FS=0.513;MQ=60.00;MQRankSum=-1.078;QD=17.00;ReadPosRankSum=0.433;SOR=0.741	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1509,0,1809
1	11836450	rs12132479	A	G	3041.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=1.988;DB;DP=84;FS=3.102;MQ=60.00;MQRankSum=-0.717;QD=18.21;ReadPosRankSum=0.229;SOR=0.916	GT:AD:DP:GQ:PL	0/1:38,46:84:99:1694,0,1579
1	11836628	rs6699881	T	C	7767.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=-0.373;DB;DP=82;FS=0.630;MQ=60.00;MQRankSum=0.698;QD=28.45;ReadPosRankSum=2.547;SOR=0.618	GT:AD:DP:GQ:PL	0/1:35,47:82:99:1722,0,1254
1	11836670	rs41275458	C	A	2496.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.210;ClippingRankSum=-0.618;DB;DP=72;FS=0.650;MQ=60.00;MQRankSum=1.591;QD=16.42;ReadPosRankSum=0.098;SOR=0.775	GT:AD:DP:GQ:PL	0/0:72,0:72:99:0,220,3203
1	11836682	rs7538516	C	T	3225.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.038;DB;DP=70;FS=10.465;MQ=60.00;MQRankSum=0.695;QD=20.94;ReadPosRankSum=-0.041;SOR=0.264	GT:AD:DP:GQ:PL	0/1:33,37:70:99:1344,0,1187
1	11836868	rs4846039	A	G	1631.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=-1.539;DB;DP=26;FS=0.000;MQ=60.00;MQRankSum=1.234;QD=23.99;ReadPosRankSum=1.628;SOR=0.813	GT:AD:DP:GQ:PL	0/1:13,13:26:99:482,0,444
1	11838646	rs12134663	A	C	1824.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=-0.129;DB;DP=47;FS=8.199;MQ=60.00;MQRankSum=-1.145;QD=19.83;ReadPosRankSum=1.239;SOR=0.135	GT:AD:DP:GQ:PL	0/1:21,26:47:99:959,0,758
1	11838696	rs72640210	A	G	2412.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.302;ClippingRankSum=0.394;DB;DP=74;FS=10.703;MQ=60.00;MQRankSum=-0.325;QD=17.48;ReadPosRankSum=1.852;SOR=1.488	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,223,3197
1	11838762	rs72640211	G	A	3565.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.722;ClippingRankSum=-1.288;DB;DP=110;FS=7.888;MQ=60.00;MQRankSum=2.485;QD=18.76;ReadPosRankSum=-0.192;SOR=1.119	GT:AD:DP:GQ:PL	0/0:110,0:110:99:0,331,4769
1	11838841	rs56001051	A	G	3336.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.571;ClippingRankSum=1.874;DB;DP=104;FS=2.767;MQ=60.00;MQRankSum=-0.398;QD=17.56;ReadPosRankSum=-0.562;SOR=0.748	GT:AD:DP:GQ:PL	0/0:104,0:104:99:0,319,4572
1	11838848	rs6697244	G	T	3633.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.784;ClippingRankSum=0.466;DB;DP=101;FS=0.938;MQ=60.00;MQRankSum=0.623;QD=17.38;ReadPosRankSum=3.345;SOR=0.764	GT:AD:DP:GQ:PL	0/1:60,41:101:99:1448,0,2311
1	11839009	rs55685198	C	T	2681.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.627;ClippingRankSum=-1.123;DB;DP=88;FS=2.571;MQ=60.00;MQRankSum=0.619;QD=17.30;ReadPosRankSum=0.754;SOR=0.925	GT:AD:DP:GQ:PL	0/0:88,0:88:99:0,264,6680
1	11839034	rs55967531	G	A	2612.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.777;ClippingRankSum=1.266;DB;DP=76;FS=3.608;MQ=60.00;MQRankSum=-0.204;QD=18.14;ReadPosRankSum=-0.158;SOR=1.002	GT:AD:DP:GQ:PL	0/0:76,0:76:99:0,231,6216
1	11839201	rs41307759	T	A	1085.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.568;ClippingRankSum=-1.038;DB;DP=38;FS=13.679;MQ=60.00;MQRankSum=1.752;QD=15.73;ReadPosRankSum=-1.466;SOR=2.303	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1613
1	11839226	rs41307757	A	G	893.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.734;DB;DP=36;FS=2.609;MQ=60.00;MQRankSum=0.066;QD=13.74;ReadPosRankSum=1.371;SOR=1.134	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,107,1494
1	11839792	rs12566905	T	C	1054.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.003;ClippingRankSum=-0.783;DB;DP=28;FS=1.175;MQ=60.00;MQRankSum=0.930;QD=21.51;ReadPosRankSum=-0.163;SOR=0.449	GT:AD:DP:GQ:PL	0/0:28,0:28:83:0,83,1082
1	11839850	rs140897322	CT	C	503.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=1.823;DB;DP=21;FS=2.499;MQ=60.14;MQRankSum=1.272;QD=10.70;ReadPosRankSum=1.020;SOR=1.090	GT:AD:DP:GQ:PL	0/1:10,11:21:99:329,0,292
1	11839923	rs12561919	C	T	1609.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.848;ClippingRankSum=1.494;DB;DP=41;FS=4.710;MQ=60.09;MQRankSum=-0.599;QD=20.63;ReadPosRankSum=1.342;SOR=1.192	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1758
1	11839966	rs4846043	G	A	1207.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=1.094;DB;DP=39;FS=2.904;MQ=60.00;MQRankSum=0.075;QD=14.54;ReadPosRankSum=-0.224;SOR=1.012	GT:AD:DP:GQ:PL	0/1:26,13:39:99:423,0,1048
1	11839972	rs41275462	G	A	1322.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.030;DB;DP=39;FS=4.242;MQ=60.00;MQRankSum=1.004;QD=20.66;ReadPosRankSum=1.004;SOR=0.361	GT:AD:DP:GQ:PL	0/1:13,26:39:99:988,0,436
1	11839998	rs4846044	T	C	3849.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=60.00;QD=35.50;SOR=2.226	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1304,93,0
1	11842144	rs10864542	C	G	1972.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=-1.186;DB;DP=34;FS=0.674;MQ=60.00;MQRankSum=1.246;QD=20.12;ReadPosRankSum=-1.028;SOR=0.783	GT:AD:DP:GQ:PL	0/1:16,18:34:99:670,0,572
1	11844214	rs12135232	A	T	2172.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.348;DB;DP=74;FS=0.606;MQ=60.00;MQRankSum=0.248;QD=15.52;ReadPosRankSum=-1.210;SOR=0.600	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1305,0,1240
1	11844330	rs10864543	C	T	4450.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.553;DB;DP=100;FS=2.480;MQ=60.00;MQRankSum=-0.300;QD=19.10;ReadPosRankSum=-0.943;SOR=0.858	GT:AD:DP:GQ:PL	0/1:48,52:100:99:1917,0,1726
1	11844737	rs55890341	A	G	850.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.250;DB;DP=16;FS=16.178;MQ=60.00;MQRankSum=-0.899;QD=21.25;ReadPosRankSum=1.149;SOR=0.014	GT:AD:DP:GQ:PL	0/0:16,0:16:48:0,48,689
1	11844827	rs4845883	A	G	1092.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MQ=60.00;QD=28.41;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,9:9:27:380,27,0
1	11845113	rs11587953	G	A	2935.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.000;MQ=60.00;QD=33.91;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1192,84,0
1	11845167	rs55820567	TTTA	T	478.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.561;ClippingRankSum=-0.603;DB;DP=34;FS=2.699;MQ=60.00;MQRankSum=-1.309;QD=8.85;ReadPosRankSum=-0.526;SOR=1.262	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1530
1	11845169	rs11586659	T	G	1556.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=-1.076;DB;DP=34;FS=1.935;MQ=60.00;MQRankSum=1.266;QD=22.88;ReadPosRankSum=0.955;SOR=0.457	GT:AD:DP:GQ:PL	0/1:16,18:34:99:684,0,602
1	11845222	rs55867221	T	C	1044.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.148;ClippingRankSum=-0.158;DB;DP=38;FS=4.203;MQ=60.00;MQRankSum=-0.452;QD=15.13;ReadPosRankSum=0.025;SOR=1.238	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,113,1603
1	11847334	rs70983598	G	GGAA	1120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.750;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=0.645;QD=16.97;ReadPosRankSum=-0.511;SOR=0.260	GT:AD:DP:GQ:PL	0/1:15,12:27:99:501,0,665
1	11847759	rs3737966	C	T	2568.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=-0.471;DB;DP=56;FS=0.551;MQ=60.00;MQRankSum=0.996;QD=19.02;ReadPosRankSum=1.018;SOR=0.620	GT:AD:DP:GQ:PL	0/1:30,26:56:99:949,0,1125
1	11847772	rs3820192	G	T	2195.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.396;ClippingRankSum=-0.402;DB;DP=61;FS=1.230;MQ=60.00;MQRankSum=-0.923;QD=15.57;ReadPosRankSum=1.191;SOR=0.563	GT:AD:DP:GQ:PL	0/0:61,0:61:99:0,184,2699
1	11847861	rs1537516	G	A	2355.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.753;DB;DP=70;FS=18.209;MQ=60.00;MQRankSum=0.602;QD=17.32;ReadPosRankSum=1.880;SOR=0.553	GT:AD:DP:GQ:PL	0/0:69,1:70:99:0,166,2847
1	11847902	rs1537515	C	A	2497.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.285;ClippingRankSum=1.150;DB;DP=64;FS=8.478;MQ=60.00;MQRankSum=-0.941;QD=18.10;ReadPosRankSum=0.815;SOR=1.217	GT:AD:DP:GQ:PL	0/0:64,0:64:99:0,192,2695
1	11848068	rs1537514	G	C	3393.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.389;ClippingRankSum=-0.015;DB;DP=103;FS=5.804;MQ=60.00;MQRankSum=-0.202;QD=15.93;ReadPosRankSum=3.639;SOR=0.442	GT:AD:DP:GQ:PL	0/0:103,0:103:99:0,310,4410
1	11848139	rs11559040	G	A	3062.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=1.032;DB;DP=87;FS=4.499;MQ=60.00;MQRankSum=-0.110;QD=18.12;ReadPosRankSum=1.719;SOR=0.973	GT:AD:DP:GQ:PL	0/1:42,45:87:99:1647,0,1505
1	11848143	rs41275468	G	A	1343.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.239;ClippingRankSum=-1.039;DB;DP=83;FS=0.632;MQ=60.00;MQRankSum=1.089;QD=15.44;ReadPosRankSum=0.906;SOR=0.774	GT:AD:DP:GQ:PL	0/0:83,0:83:99:0,255,4198
1	11848879	rs2077360	A	G	6634.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.000;MQ=60.00;QD=33.60;SOR=2.528	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1418,104,0
1	11848972	rs72640221	G	A	1176.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.088;DB;DP=31;FS=5.748;MQ=60.00;MQRankSum=-0.514;QD=17.82;ReadPosRankSum=0.773;SOR=0.105	GT:AD:DP:GQ:PL	0/0:31,0:31:92:0,92,1260
1	11849447	rs868014	A	G	6993.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.00;QD=31.05;SOR=0.832	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1643,114,0
1	11851003	rs3818762	G	C	3703.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=-0.155;DB;DP=67;FS=7.128;MQ=60.00;MQRankSum=0.518;QD=16.83;ReadPosRankSum=0.962;SOR=1.300	GT:AD:DP:GQ:PL	0/1:38,29:67:99:896,0,1406
1	11852300	rs1476413	C	T	6835.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.356;DB;DP=91;FS=4.878;MQ=60.00;MQRankSum=-0.348;QD=25.04;ReadPosRankSum=0.067;SOR=0.451	GT:AD:DP:GQ:PL	0/1:38,53:91:99:1888,0,1355
1	11852516	rs17375901	C	T	2496.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.977;ClippingRankSum=-2.963;DB;DP=49;FS=0.000;MQ=60.00;MQRankSum=-0.026;QD=18.91;ReadPosRankSum=1.315;SOR=0.330	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2129
1	11854457	rs4846051	G	A	17535.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;FS=0.000;MQ=59.97;QD=31.25;SOR=1.430	GT:AD:DP:GQ:PL	1/1:0,125:125:99:5554,382,0
1	11854476	rs1801131	T	G	10827.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=-0.272;DB;DP=133;FS=0.000;MQ=59.97;MQRankSum=0.045;QD=25.66;ReadPosRankSum=0.460;SOR=0.702	GT:AD:DP:GQ:PL	0/1:64,69:133:99:2472,0,2311
1	11854671	rs12121543	C	A	8756.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.962;DB;DP=96;FS=1.478;MQ=60.00;MQRankSum=0.802;QD=27.89;ReadPosRankSum=1.223;SOR=0.607	GT:AD:DP:GQ:PL	0/1:45,51:96:99:1869,0,1608
1	11854755	rs1994798	G	A	3846.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.550;ClippingRankSum=1.421;DB;DP=115;FS=3.880;MQ=60.00;MQRankSum=-0.211;QD=15.70;ReadPosRankSum=1.407;SOR=0.931	GT:AD:DP:GQ:PL	0/1:67,48:115:99:1746,0,2404
1	11854896	rs2066462	G	A	2298.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.107;DB;DP=64;FS=1.326;MQ=60.00;MQRankSum=1.193;QD=17.95;ReadPosRankSum=0.544;SOR=0.812	GT:AD:DP:GQ:PL	0/0:64,0:64:99:0,191,2667
1	11856378	rs1801133	G	A	3229.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=1.752;DB;DP=90;FS=2.151;MQ=60.00;MQRankSum=-0.117;QD=16.65;ReadPosRankSum=-1.048;SOR=0.832	GT:AD:DP:GQ:PL	0/1:48,42:90:99:1507,0,1826
1	11860458	rs2066471	C	T	3069.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.804;ClippingRankSum=-1.543;DB;DP=95;FS=0.000;MQ=60.00;MQRankSum=-1.349;QD=17.15;ReadPosRankSum=1.285;SOR=0.670	GT:AD:DP:GQ:PL	0/1:46,49:95:99:1854,0,1628
1	11860683	rs7533315	T	C	2563.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;ClippingRankSum=-0.440;DB;DP=27;FS=5.700;MQ=60.00;MQRankSum=-0.797;QD=29.46;ReadPosRankSum=-1.094;SOR=2.303	GT:AD:DP:GQ:PL	0/1:14,13:27:99:466,0,494
1	11863057	rs2066470	G	A	6946.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.364;ClippingRankSum=-0.348;DB;DP=136;FS=0.000;MQ=60.00;MQRankSum=0.604;QD=19.29;ReadPosRankSum=1.155;SOR=0.678	GT:AD:DP:GQ:PL	0/0:136,0:136:99:0,408,5794
1	11867044	rs3737964	T	C	3715.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.193;ClippingRankSum=-0.145;DB;DP=35;FS=0.000;MQ=60.00;MQRankSum=-1.352;QD=28.15;ReadPosRankSum=-1.306;SOR=1.282	GT:AD:DP:GQ:PL	0/1:18,17:35:99:604,0,670
1	11876417	rs198391	C	T	1800.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=2.612;DB;DP=39;FS=10.177;MQ=60.00;MQRankSum=0.205;QD=17.65;ReadPosRankSum=1.013;SOR=2.093	GT:AD:DP:GQ:PL	0/1:20,19:39:99:728,0,719
1	11876662	rs17376328	G	A	5516.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.316;ClippingRankSum=-0.929;DB;DP=113;FS=0.546;MQ=60.00;MQRankSum=1.124;QD=18.03;ReadPosRankSum=2.115;SOR=0.713	GT:AD:DP:GQ:PL	0/0:113,0:113:99:0,340,4879
1	11876902	rs55875233	CTT	C	1068.22	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.206;ClippingRankSum=0.961;DB;DP=32;FS=3.928;MQ=60.09;MQRankSum=0.305;QD=14.44;ReadPosRankSum=0.852;SOR=0.105	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1150
1	11879685	rs198393	C	T	5049.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.038;ClippingRankSum=-0.633;DB;DP=60;FS=3.340;MQ=60.00;MQRankSum=1.525;QD=23.70;ReadPosRankSum=1.125;SOR=1.166	GT:AD:DP:GQ:PL	0/1:36,24:60:99:869,0,1301
1	11879699	rs2050265	A	G	2507.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.466;ClippingRankSum=1.205;DB;DP=54;FS=1.764;MQ=60.00;MQRankSum=-0.029;QD=16.60;ReadPosRankSum=1.695;SOR=1.273	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,2344
1	11883731	rs12567136	C	T	2492.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.806;ClippingRankSum=-0.730;DB;DP=51;FS=5.791;MQ=60.00;MQRankSum=0.542;QD=16.95;ReadPosRankSum=2.030;SOR=1.849	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,154,2212
1	11884555	rs198400	A	G	13890.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;FS=0.000;MQ=60.00;QD=33.95;SOR=0.939	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4585,321,0
1	11886383	rs138460149	C	CTG	2141.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.281;DB;DP=39;FS=4.201;MQ=60.00;MQRankSum=0.119;QD=22.78;ReadPosRankSum=-0.987;SOR=0.200	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1784
1	11887303	rs7537765	A	G	2053.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.313;ClippingRankSum=0.555;DB;DP=48;FS=0.762;MQ=60.08;MQRankSum=0.773;QD=22.08;ReadPosRankSum=0.675;SOR=0.585	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,2221
1	11887316	rs41275478	C	A	2015.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.302;ClippingRankSum=1.129;DB;DP=41;FS=3.356;MQ=60.09;MQRankSum=1.200;QD=23.99;ReadPosRankSum=1.246;SOR=0.388	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,132,2009
1	11887373	rs78178972	T	TG	2024.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=-1.607;DB;DP=28;FS=1.025;MQ=60.10;MQRankSum=0.330;QD=18.74;ReadPosRankSum=-2.448;SOR=0.544	GT:AD:DP:GQ:PL	0/1:15,13:28:99:320,0,383
1	11887382	rs56190030	A	G	1070.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.891;ClippingRankSum=-0.141;DB;DP=33;FS=1.105;MQ=60.00;MQRankSum=1.252;QD=13.72;ReadPosRankSum=-0.332;SOR=0.846	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1542
1	11888073	rs41275480	C	T	1694.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.942;ClippingRankSum=-0.688;DB;DP=86;FS=2.646;MQ=60.00;MQRankSum=-0.083;QD=20.92;ReadPosRankSum=0.597;SOR=1.164	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,258,3729
1	11888384	rs198401	A	G	8636.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=-1.978;DB;DP=87;FS=4.703;MQ=60.00;MQRankSum=-0.797;QD=26.65;ReadPosRankSum=0.461;SOR=0.477	GT:AD:DP:GQ:PL	0/1:41,46:87:99:1620,0,1507
1	11889468	rs535107	A	G	6483.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.612;ClippingRankSum=-0.979;DB;DP=78;FS=2.517;MQ=60.00;MQRankSum=-0.337;QD=23.75;ReadPosRankSum=0.093;SOR=0.898	GT:AD:DP:GQ:PL	0/1:43,35:78:99:1255,0,1586
1	11894133	rs41275494	A	G	3519.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.460;ClippingRankSum=0.240;DB;DP=100;FS=1.010;MQ=60.00;MQRankSum=-0.665;QD=18.33;ReadPosRankSum=1.782;SOR=0.594	GT:AD:DP:GQ:PL	0/0:100,0:100:99:0,300,4244
1	11894263	rs72640263	A	G	1499.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=-0.765;DB;DP=95;FS=8.909;MQ=60.00;MQRankSum=-0.246;QD=15.45;ReadPosRankSum=1.105;SOR=0.293	GT:AD:DP:GQ:PL	0/1:51,44:95:99:1530,0,1799
1	11896856	rs55892892	C	A	1134.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.796;ClippingRankSum=-0.831;DB;DP=19;FS=6.874;MQ=60.00;MQRankSum=-0.878;QD=22.24;ReadPosRankSum=0.183;SOR=0.068	GT:AD:DP:GQ:PL	0/0:19,0:19:57:0,57,822
1	11897286	rs72640267	G	T	4203.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.060;ClippingRankSum=-0.609;DB;DP=88;FS=1.452;MQ=60.00;MQRankSum=0.673;QD=17.96;ReadPosRankSum=-1.700;SOR=0.584	GT:AD:DP:GQ:PL	0/0:88,0:88:99:0,265,3820
1	11897351	rs72640268	G	C	1844.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=-0.594;DB;DP=102;FS=19.118;MQ=60.00;MQRankSum=-1.641;QD=18.08;ReadPosRankSum=-0.104;SOR=0.345	GT:AD:DP:GQ:PL	0/1:50,52:102:99:1875,0,1876
1	11897592	rs198406	A	G	5567.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.854;DB;DP=78;FS=0.000;MQ=60.00;MQRankSum=0.931;QD=22.91;ReadPosRankSum=-0.096;SOR=0.643	GT:AD:DP:GQ:PL	0/1:53,25:78:99:806,0,2000
1	11898859	rs55741089	G	A	8149.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.195;DB;DP=215;FS=2.711;MQ=60.00;MQRankSum=-0.285;QD=16.40;ReadPosRankSum=1.469;SOR=0.517	GT:AD:DP:GQ:PL	0/0:215,0:215:99:0,643,9067
1	11899033	rs1023252	G	T	11162.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.242;DB;DP=134;FS=2.314;MQ=60.00;MQRankSum=0.122;QD=24.70;ReadPosRankSum=-0.722;SOR=0.880	GT:AD:DP:GQ:PL	0/1:67,67:134:99:2415,0,2426
1	11900035	rs198410	G	A	8564.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;FS=0.000;MQ=59.90;QD=34.19;SOR=9.250	GT:AD:DP:GQ:PL	1/1:0,71:71:99:3081,214,0
1	11905851	rs61764044	A	G	925.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.744;DB;DP=32;FS=2.574;MQ=60.00;MQRankSum=-0.438;QD=16.23;ReadPosRankSum=0.654;SOR=1.419	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1367
1	11905974	rs5068	A	G	2040.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.192;ClippingRankSum=-1.661;DB;DP=33;FS=8.132;MQ=60.00;MQRankSum=0.554;QD=16.86;ReadPosRankSum=0.315;SOR=0.137	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1392
1	11917620	rs35207557	T	TA	2551.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=-1.301;DB;DP=37;FS=0.792;MQ=60.15;MQRankSum=0.780;QD=17.59;ReadPosRankSum=-0.182;SOR=0.600	GT:AD:DP:GQ:PL	0/1:15,22:37:99:559,0,347
1	11971345	rs4845889	T	C	306.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.689;DB;DP=17;FS=3.190;MQ=60.00;MQRankSum=-0.095;QD=18.01;ReadPosRankSum=0.500;SOR=0.125	GT:AD:DP:GQ:PL	0/1:8,9:17:99:337,0,298
1	11982544	rs2639453	T	C	11338.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.138;ClippingRankSum=2.039;DB;DP=83;FS=0.000;MQ=59.94;MQRankSum=1.691;QD=30.76;ReadPosRankSum=0.174;SOR=3.405	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3519,249,0
1	11982580	rs11555351	G	A	1887.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=-1.452;DB;DP=109;FS=4.839;MQ=59.96;MQRankSum=1.736;QD=17.31;ReadPosRankSum=2.287;SOR=1.249	GT:AD:DP:GQ:PL	0/1:56,53:109:99:1918,0,2031
1	11983206	rs3795408	A	G	2603.13	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=2.101;ClippingRankSum=-0.107;DB;DP=176;FS=4.398;MQ=55.32;MQRankSum=-13.840;QD=14.62;ReadPosRankSum=3.212;SOR=1.195	GT:AD:DP:GQ:PL	0/1:97,79:176:99:2634,0,3618
1	11995176	rs1208984	A	G	3846.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MQ=60.00;QD=29.64;SOR=2.960	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1276,87,0
1	12004479	.	TAC	T	297.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.635;DP=25;FS=3.551;MQ=60.38;MQRankSum=0.517;QD=2.59;ReadPosRankSum=0.161;SOR=1.386	GT:AD:DP:GQ:PL	0/1:21,4:25:55:55,0,637
1	12004493	rs200750652	C	CAA	259.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.014;DB;DP=33;FS=1.873;MQ=60.53;MQRankSum=1.422;QD=7.20;ReadPosRankSum=-0.537;SOR=0.264	GT:AD:DP:GQ:PL	0/1:22,11:33:99:299,0,826
1	12004819	rs142782618	G	A	301.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=-0.560;DB;DP=22;FS=9.388;MQ=60.00;MQRankSum=-0.400;QD=13.69;ReadPosRankSum=-0.458;SOR=0.031	GT:AD:DP:GQ:PL	0/1:12,10:22:99:332,0,417
1	12009956	rs7551175	G	A	1346.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.881;DB;DP=77;FS=4.326;MQ=60.00;MQRankSum=1.673;QD=17.48;ReadPosRankSum=0.344;SOR=1.126	GT:AD:DP:GQ:PL	0/1:40,37:77:99:1377,0,1415
1	12012409	rs2273286	A	G	407.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.552;DB;DP=26;FS=0.000;MQ=60.00;MQRankSum=1.110;QD=15.66;ReadPosRankSum=1.312;SOR=0.384	GT:AD:DP:GQ:PL	0/1:14,12:26:99:438,0,529
1	12016957	rs41307745	T	G	1374.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=1.002;DB;DP=67;FS=0.000;MQ=60.00;MQRankSum=0.159;QD=20.21;ReadPosRankSum=2.400;SOR=0.632	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1405,0,1077
1	12018290	rs2273289	T	C	775.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510;ClippingRankSum=-0.077;DB;DP=44;FS=2.162;MQ=60.00;MQRankSum=2.089;QD=17.62;ReadPosRankSum=0.565;SOR=1.059	GT:AD:DP:GQ:PL	0/1:21,23:44:99:806,0,760
1	12023500	rs72641011	G	A	2207.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.899;ClippingRankSum=-0.077;DB;DP=59;FS=1.384;MQ=60.00;MQRankSum=-0.714;QD=16.60;ReadPosRankSum=2.886;SOR=0.873	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,177,2538
1	12027204	rs2273293	C	T	460.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=-0.635;DB;DP=39;FS=2.496;MQ=60.00;MQRankSum=0.701;QD=11.80;ReadPosRankSum=-1.964;SOR=0.180	GT:AD:DP:GQ:PL	0/1:25,14:39:99:491,0,969
1	12033113	rs3737961	A	G	1425.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.741;ClippingRankSum=-1.524;DB;DP=64;FS=4.407;MQ=60.00;MQRankSum=0.691;QD=22.27;ReadPosRankSum=2.441;SOR=1.743	GT:AD:DP:GQ:PL	0/1:27,37:64:99:1456,0,2026
1	12033120	rs3820190	G	C	1430.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.042;DB;DP=62;FS=2.194;MQ=60.00;MQRankSum=-0.536;QD=23.07;ReadPosRankSum=2.928;SOR=1.351	GT:AD:DP:GQ:PL	0/1:26,36:62:99:1461,0,1993
1	12040324	rs2236054	A	G	52.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=1.231;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=0.358;QD=17.38;ReadPosRankSum=0.358;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,2:3:30:80,0,30
1	12056440	rs2236056	C	T	8947.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=60.00;QD=27.29;SOR=9.270	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2246,156,0
1	12058606	rs143897072	AAAAAC	A	5041.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.000;MQ=58.82;QD=33.99;SOR=4.332	GT:AD:DP:GQ:PL	1/1:0,32:32:97:1429,97,0
1	12062205	rs2236057	A	G	9072.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.000;MQ=60.00;QD=32.63;SOR=4.438	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2803,198,0
1	12067044	rs7550536	T	G	5261.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.00;QD=30.73;SOR=2.152	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1946,135,0
1	12071433	rs3766741	C	G	866.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=1.370;DB;DP=51;FS=8.580;MQ=60.00;MQRankSum=2.850;QD=16.98;ReadPosRankSum=0.040;SOR=0.162	GT:AD:DP:GQ:PL	0/1:27,24:51:99:897,0,1017
1	12071680	rs1042842	A	G	4732.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=60.00;QD=26.40;SOR=6.166	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1800,126,0
1	12082926	rs2295283	A	G	6954.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.556;DB;DP=59;FS=7.480;MQ=60.00;MQRankSum=1.237;QD=34.60;ReadPosRankSum=-0.881;SOR=0.202	GT:AD:DP:GQ:PL	0/1:31,28:59:99:1011,0,1175
1	12091210	rs946461	T	C	4085.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.313;ClippingRankSum=-1.089;DB;DP=28;FS=5.816;MQ=60.00;MQRankSum=-1.236;QD=26.77;ReadPosRankSum=1.921;SOR=3.651	GT:AD:DP:GQ:PL	0/1:16,12:28:99:443,0,595
1	12144219	rs1201114	A	G	3434.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.287;DB;DP=37;FS=0.000;MQ=60.00;MQRankSum=1.274;QD=34.34;ReadPosRankSum=-1.189;SOR=1.329	GT:AD:DP:GQ:PL	0/1:16,21:37:99:785,0,584
1	12144434	rs1201113	G	A	2847.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.305;ClippingRankSum=0.861;DB;DP=92;FS=2.617;MQ=60.00;MQRankSum=-0.186;QD=14.16;ReadPosRankSum=2.081;SOR=0.912	GT:AD:DP:GQ:PL	0/1:57,35:92:99:1189,0,2165
1	12144662	rs11569821	T	A	1447.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.002;ClippingRankSum=-0.338;DB;DP=86;FS=0.801;MQ=60.00;MQRankSum=-0.499;QD=16.26;ReadPosRankSum=-1.311;SOR=0.777	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,258,5604
1	12144667	rs11569822	C	T	1450.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.625;DB;DP=82;FS=0.804;MQ=60.00;MQRankSum=0.211;QD=16.48;ReadPosRankSum=-1.131;SOR=0.802	GT:AD:DP:GQ:PL	0/0:82,0:82:99:0,253,5556
1	12144801	rs137907825	CTG	C	472.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.456;ClippingRankSum=0.343;DB;DP=30;FS=9.195;MQ=60.10;MQRankSum=0.855;QD=13.89;ReadPosRankSum=1.248;SOR=0.072	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1321
1	12157288	rs11569835	T	C	6145.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.648;DB;DP=66;FS=3.526;MQ=60.00;MQRankSum=0.516;QD=28.32;ReadPosRankSum=0.179;SOR=0.476	GT:AD:DP:GQ:PL	0/1:29,37:66:99:1347,0,978
1	12164391	rs11569850	G	C	2457.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=-0.643;DB;DP=48;FS=0.000;MQ=60.00;MQRankSum=0.743;QD=15.46;ReadPosRankSum=-0.265;SOR=0.916	GT:AD:DP:GQ:PL	0/1:25,23:48:99:831,0,914
1	12164675	rs11569852	G	A	3752.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.566;DB;DP=66;FS=1.152;MQ=60.00;MQRankSum=0.409;QD=17.22;ReadPosRankSum=1.562;SOR=0.893	GT:AD:DP:GQ:PL	0/1:34,32:66:99:1137,0,1235
1	12169977	rs11569873	C	G	2614.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.639;DB;DP=35;FS=3.539;MQ=60.00;MQRankSum=-0.865;QD=19.23;ReadPosRankSum=0.682;SOR=1.040	GT:AD:DP:GQ:PL	0/1:20,15:35:99:532,0,670
1	12170288	rs2297729	G	A	4084.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.677;ClippingRankSum=1.607;DB;DP=56;FS=2.319;MQ=60.00;MQRankSum=-1.073;QD=18.40;ReadPosRankSum=0.516;SOR=0.547	GT:AD:DP:GQ:PL	0/1:25,31:56:99:1193,0,916
1	12170425	rs3818804	G	T	2946.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.799;ClippingRankSum=-0.698;DB;DP=44;FS=0.000;MQ=59.89;MQRankSum=-0.195;QD=18.42;ReadPosRankSum=1.183;SOR=0.732	GT:AD:DP:GQ:PL	0/1:20,24:44:99:907,0,699
1	12170494	rs11121865	C	G	975.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.273;ClippingRankSum=-0.233;DB;DP=20;FS=0.000;MQ=60.00;MQRankSum=-0.199;QD=13.19;ReadPosRankSum=2.059;SOR=0.335	GT:AD:DP:GQ:PL	0/1:12,8:20:99:296,0,429
1	12175729	rs1763642	C	T	10638.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.000;MQ=60.00;QD=34.88;SOR=0.750	GT:AD:DP:GQ:PL	1/1:0,73:73:99:3140,219,0
1	12175818	rs77569300	A	G	2797.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=-1.097;DB;DP=36;FS=0.710;MQ=60.00;MQRankSum=-1.024;QD=17.71;ReadPosRankSum=2.836;SOR=0.596	GT:AD:DP:GQ:PL	0/1:24,12:36:99:416,0,889
1	12183174	rs4846096	A	C	1315.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.691;ClippingRankSum=-0.051;DB;DP=64;FS=2.782;MQ=60.00;MQRankSum=-0.749;QD=21.21;ReadPosRankSum=1.263;SOR=0.335	GT:AD:DP:GQ:PL	0/0:64,0:64:99:0,192,2718
1	12183245	rs2486316	G	T	1528.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.327;DB;DP=94;FS=1.610;MQ=60.00;MQRankSum=-0.905;QD=20.11;ReadPosRankSum=0.282;SOR=0.878	GT:AD:DP:GQ:PL	0/0:94,0:94:99:0,282,4008
1	12186205	rs151141150	C	T	1147.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.467;DB;DP=62;FS=6.134;MQ=60.00;MQRankSum=-0.020;QD=18.50;ReadPosRankSum=0.777;SOR=0.341	GT:AD:DP:GQ:PL	0/1:29,33:62:99:1178,0,1074
1	12198297	rs476488	T	C	2151.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.905;ClippingRankSum=0.918;DB;DP=60;FS=4.454;MQ=60.00;MQRankSum=0.605;QD=17.78;ReadPosRankSum=2.233;SOR=1.145	GT:AD:DP:GQ:PL	0/1:34,26:60:99:967,0,1245
1	12198635	rs6419481	T	C	8802.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.000;MQ=60.00;QD=31.48;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,79:79:99:3347,237,0
1	12248942	rs945439	A	G	2436.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.914;ClippingRankSum=0.291;DB;DP=82;FS=6.329;MQ=60.00;MQRankSum=-1.263;QD=15.04;ReadPosRankSum=2.168;SOR=1.303	GT:AD:DP:GQ:PL	0/1:46,36:82:99:1383,0,2105
1	12248965	rs945438	A	G	2543.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.881;ClippingRankSum=1.665;DB;DP=64;FS=7.537;MQ=60.00;MQRankSum=-1.070;QD=18.43;ReadPosRankSum=-0.613;SOR=1.492	GT:AD:DP:GQ:PL	0/1:31,33:64:99:1328,0,1474
1	12249020	rs1815530	C	T	2033.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=-0.234;DB;DP=48;FS=1.773;MQ=60.00;MQRankSum=0.446;QD=18.65;ReadPosRankSum=0.002;SOR=1.192	GT:AD:DP:GQ:PL	0/1:25,23:48:99:869,0,1342
1	12249031	rs1201157	A	G	1810.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.997;ClippingRankSum=-2.165;DB;DP=47;FS=0.000;MQ=60.00;MQRankSum=0.125;QD=18.28;ReadPosRankSum=-0.485;SOR=0.502	GT:AD:DP:GQ:PL	0/1:25,22:47:99:837,0,1313
1	12251191	rs472093	T	A	2994.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.529;DB;DP=66;FS=0.000;MQ=60.00;MQRankSum=0.482;QD=19.19;ReadPosRankSum=1.743;SOR=0.305	GT:AD:DP:GQ:PL	0/1:33,33:66:99:1188,0,1189
1	12251765	rs498906	T	G	2261.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=-0.602;DB;DP=50;FS=0.000;MQ=60.00;MQRankSum=-1.758;QD=20.74;ReadPosRankSum=1.028;SOR=0.712	GT:AD:DP:GQ:PL	0/1:19,31:50:99:1186,0,597
1	12251808	rs653667	T	G	2983.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;ClippingRankSum=-0.327;DB;DP=74;FS=0.000;MQ=60.00;MQRankSum=0.505;QD=20.29;ReadPosRankSum=0.001;SOR=0.703	GT:AD:DP:GQ:PL	0/1:30,44:74:99:1637,0,1080
1	12252333	.	CTGTG	C,CTGTGTG	1558.88	PASS	AC=1,0;AF=0.500,0.00;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.533;DP=27;FS=0.000;MQ=59.61;MQRankSum=-0.619;QD=10.39;ReadPosRankSum=0.401;SOR=1.371	GT:AD:DP:GQ:PL	0/1:11,16,0:27:99:633,0,572,669,330,973
1	12252892	rs1768642	C	T	1772.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=-1.397;DB;DP=36;FS=0.000;MQ=60.00;MQRankSum=0.307;QD=17.21;ReadPosRankSum=0.624;SOR=0.615	GT:AD:DP:GQ:PL	0/1:20,16:36:99:543,0,771
1	12252955	rs1061622	T	G	2816.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=-0.355;DB;DP=67;FS=0.000;MQ=60.00;MQRankSum=0.239;QD=18.90;ReadPosRankSum=2.716;SOR=0.625	GT:AD:DP:GQ:PL	0/1:36,31:67:99:1129,0,1342
1	12253351	rs636964	T	C	1763.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=-1.101;DB;DP=45;FS=6.208;MQ=60.00;MQRankSum=0.240;QD=17.63;ReadPosRankSum=-0.135;SOR=0.158	GT:AD:DP:GQ:PL	0/1:23,22:45:99:803,0,867
1	12254201	rs2275416	G	A	3516.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.582;ClippingRankSum=0.748;DB;DP=83;FS=1.036;MQ=60.00;MQRankSum=-0.768;QD=19.43;ReadPosRankSum=1.959;SOR=0.880	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1636,0,1422
1	12261972	rs5746051	A	G	1484.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;ClippingRankSum=0.439;DB;DP=39;FS=1.557;MQ=60.00;MQRankSum=-0.954;QD=17.67;ReadPosRankSum=1.799;SOR=0.863	GT:AD:DP:GQ:PL	0/1:20,19:39:99:683,0,747
1	12262298	rs5746053	G	A	862.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.060;DB;DP=22;FS=1.987;MQ=60.00;MQRankSum=0.070;QD=15.40;ReadPosRankSum=0.811;SOR=0.277	GT:AD:DP:GQ:PL	0/1:11,11:22:99:392,0,418
1	12262426	rs5746054	C	T	254.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.311;DB;DP=5;FS=0.000;MQ=60.00;MQRankSum=0.133;QD=23.12;ReadPosRankSum=-1.022;SOR=0.512	GT:AD:DP:GQ:PL	0/1:2,3:5:75:84,0,75
1	12266591	rs5746061	A	G	899.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=-0.115;DB;DP=28;FS=2.438;MQ=60.00;MQRankSum=-0.680;QD=13.22;ReadPosRankSum=0.489;SOR=1.552	GT:AD:DP:GQ:PL	0/1:20,8:28:99:268,0,763
1	12266612	rs5746062	A	G	1477.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=1.487;DB;DP=47;FS=2.589;MQ=60.00;MQRankSum=-2.164;QD=15.23;ReadPosRankSum=-0.195;SOR=1.591	GT:AD:DP:GQ:PL	0/1:29,18:47:99:629,0,1112
1	12304694	rs79820334	A	G	2048.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.390;ClippingRankSum=-1.260;DB;DP=65;FS=2.053;MQ=59.91;MQRankSum=0.504;QD=14.84;ReadPosRankSum=1.578;SOR=0.947	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,196,2800
1	12343030	rs41279454	T	C	1716.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.244;DB;DP=105;FS=2.728;MQ=60.00;MQRankSum=-0.502;QD=16.34;ReadPosRankSum=1.345;SOR=0.484	GT:AD:DP:GQ:PL	0/0:105,0:105:99:0,315,4514
1	12368705	.	GT	G	131.51	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=2.281;ClippingRankSum=-0.938;DP=34;FS=4.695;MQ=60.00;MQRankSum=-0.017;QD=1.28;ReadPosRankSum=-0.128;SOR=0.051	GT:AD:DP:GQ:PL	0/0:29,5:34:6:0,6,594
1	12401868	rs28551666	A	C	10295.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.000;MQ=59.96;QD=31.37;SOR=3.547	GT:AD:DP:GQ:PL	1/1:0,73:73:99:3166,220,0
1	12418700	rs10864552	T	C	7135.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.168;ClippingRankSum=-0.663;DB;DP=51;FS=0.000;MQ=60.00;MQRankSum=0.841;QD=26.89;ReadPosRankSum=-0.742;SOR=5.307	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2011,151,0
1	12567232	rs7554257	A	G	17328.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;FS=0.000;MQ=60.00;QD=25.38;SOR=0.850	GT:AD:DP:GQ:PL	1/1:0,102:102:99:4277,305,0
1	12628471	rs4072868	A	C	2162.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=-3.427;DB;DP=124;FS=0.000;MQ=60.00;MQRankSum=0.949;QD=17.44;ReadPosRankSum=0.124;SOR=0.718	GT:AD:DP:GQ:PL	0/1:64,60:124:99:2193,0,2302
1	12632992	rs4846122	A	G	1083.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=-0.411;DB;DP=75;FS=4.298;MQ=60.00;MQRankSum=-2.077;QD=14.44;ReadPosRankSum=-1.393;SOR=0.279	GT:AD:DP:GQ:PL	0/1:43,32:75:99:1114,0,1613
1	12638964	rs2275875	T	C	13012.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=-1.639;DB;DP=151;FS=4.268;MQ=60.00;MQRankSum=1.635;QD=25.22;ReadPosRankSum=-1.621;SOR=0.864	GT:AD:DP:GQ:PL	0/1:80,71:151:99:2607,0,2964
1	12639018	rs2275874	C	T	9023.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.375;ClippingRankSum=1.477;DB;DP=150;FS=0.528;MQ=60.00;MQRankSum=2.337;QD=29.11;ReadPosRankSum=2.507;SOR=0.762	GT:AD:DP:GQ:PL	0/0:150,0:150:99:0,451,6393
1	12639168	rs3128461	A	G	11064.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=-0.623;DB;DP=151;FS=3.255;MQ=60.00;MQRankSum=0.223;QD=22.35;ReadPosRankSum=-0.569;SOR=0.843	GT:AD:DP:GQ:PL	0/1:82,69:151:99:2472,0,2942
1	12639197	rs76168042	GCCA	G	2503.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=-0.105;DB;DP=142;FS=2.674;MQ=60.00;MQRankSum=0.133;QD=16.80;ReadPosRankSum=0.345;SOR=1.074	GT:AD:DP:GQ:PL	0/1:76,66:142:99:2543,0,2975
1	12639226	rs61776831	C	T	2053.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.373;ClippingRankSum=0.420;DB;DP=133;FS=4.079;MQ=60.00;MQRankSum=0.004;QD=15.44;ReadPosRankSum=1.851;SOR=1.306	GT:AD:DP:GQ:PL	0/1:76,57:133:99:2084,0,2878
1	12640650	rs11540058	C	T	1650.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;ClippingRankSum=0.069;DB;DP=84;FS=0.621;MQ=60.00;MQRankSum=0.827;QD=19.64;ReadPosRankSum=3.978;SOR=0.604	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1681,0,1370
1	12640914	rs61776832	G	A	386.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.444;DB;DP=20;FS=0.000;MQ=60.00;MQRankSum=-1.675;QD=19.31;ReadPosRankSum=1.403;SOR=0.404	GT:AD:DP:GQ:PL	0/1:9,11:20:99:417,0,316
1	12776134	rs3010874	C	A	4572.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.00;QD=28.34;SOR=7.130	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1622,114,0
1	12776218	rs3000860	A	C	8434.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.000;MQ=60.00;QD=31.99;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2525,177,0
1	12776344	rs3000859	A	T	12530.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;FS=0.000;MQ=60.00;QD=29.42;SOR=1.270	GT:AD:DP:GQ:PL	1/1:0,80:80:99:3386,240,0
1	12779560	rs3010876	T	C	8540.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.180;ClippingRankSum=1.113;DB;DP=94;FS=7.406;MQ=60.00;MQRankSum=0.392;QD=24.33;ReadPosRankSum=0.498;SOR=0.952	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3837,280,0
1	12779618	rs3010877	T	C	6956.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.267;DB;DP=89;FS=4.588;MQ=60.00;MQRankSum=0.186;QD=25.48;ReadPosRankSum=0.586;SOR=1.067	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3719,266,0
1	12785093	rs4361998	T	G	2229.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=-1.537;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=0.712;QD=17.98;ReadPosRankSum=0.743;SOR=0.735	GT:AD:DP:GQ:PL	0/1:27,29:56:99:1077,0,952
1	12785494	rs7513079	G	T	4763.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;ClippingRankSum=-0.537;DB;DP=109;FS=1.907;MQ=60.00;MQRankSum=1.455;QD=18.18;ReadPosRankSum=0.209;SOR=0.836	GT:AD:DP:GQ:PL	0/1:53,56:109:99:2033,0,1930
1	12786070	rs3000930	A	G	864.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=-2.589;DB;DP=23;FS=0.000;MQ=60.00;MQRankSum=-0.451;QD=18.79;ReadPosRankSum=1.906;SOR=0.155	GT:AD:DP:GQ:PL	0/1:10,13:23:99:480,0,327
1	12788790	rs3010891	T	A	122.15	PASS	AC=0;AF=0.00;AN=0;BaseQRankSum=0.361;ClippingRankSum=0.876;DB;DP=9;FS=0.000;MQ=60.00;MQRankSum=-0.361;QD=13.57;ReadPosRankSum=-0.876;SOR=0.527	GT	./.
1	12788865	rs4372265	C	T	75.56	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.441;ClippingRankSum=-1.071;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=1.449;QD=12.59;ReadPosRankSum=-1.323;SOR=0.382	GT:AD:DP:GQ:PL	0/0:3,0:3:9:0,9,133
1	12820870	rs1132185	T	C	2821.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=1.411;DB;DP=84;FS=1.470;MQ=60.00;MQRankSum=-2.159;QD=18.44;ReadPosRankSum=0.851;SOR=0.875	GT:AD:DP:GQ:PL	0/1:38,46:84:99:1704,0,1423
1	12835868	rs1812242	T	C	4296.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.711;ClippingRankSum=-0.655;DB;DP=132;FS=1.278;MQ=59.95;MQRankSum=-0.626;QD=16.52;ReadPosRankSum=2.014;SOR=0.824	GT:AD:DP:GQ:PL	0/1:71,61:132:99:2205,0,2623
1	12837634	rs848578	T	A	5740.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.758;ClippingRankSum=0.393;DB;DP=131;FS=2.689;MQ=59.53;MQRankSum=-1.048;QD=20.28;ReadPosRankSum=0.806;SOR=0.494	GT:AD:DP:GQ:PL	0/1:53,78:131:99:2917,0,1760
1	12837840	rs848577	G	C	3112.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=1.414;DB;DP=85;FS=2.642;MQ=60.00;MQRankSum=-0.410;QD=18.09;ReadPosRankSum=0.483;SOR=0.466	GT:AD:DP:GQ:PL	0/1:38,47:85:99:1714,0,1373
1	12853217	rs5000865	A	T	430.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=-0.429;DB;DP=28;FS=2.446;MQ=54.92;MQRankSum=-7.065;QD=4.63;ReadPosRankSum=2.500;SOR=1.351	GT:AD:DP:GQ:PL	0/1:23,5:28:99:119,0,897
1	12853230	rs115390497	G	A	173.93	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.619;DB;DP=27;FS=0.000;MQ=56.25;MQRankSum=-5.937;QD=1.85;ReadPosRankSum=0.795;SOR=0.746	GT:AD:DP:GQ:PL	0/1:23,4:27:78:78,0,1800
1	12853231	rs5000864	T	C	401.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.303;ClippingRankSum=0.701;DB;DP=28;FS=0.000;MQ=56.33;MQRankSum=-6.450;QD=4.19;ReadPosRankSum=0.403;SOR=0.876	GT:AD:DP:GQ:PL	0/1:24,4:28:96:96,0,973
1	12853243	rs5000863	A	T	133.57	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=-0.457;DB;DP=32;FS=0.000;MQ=56.97;MQRankSum=-5.980;QD=1.78;ReadPosRankSum=-1.853;SOR=0.420	GT:AD:DP:GQ:PL	0/1:28,4:32:53:53,0,1123
1	12853403	rs1737157	A	C	986.16	SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=-1.397;DB;DP=53;FS=81.997;MQ=45.71;MQRankSum=-5.331;QD=6.01;ReadPosRankSum=1.739;SOR=1.040	GT:AD:DP:GQ:PL	0/1:26,27:53:99:925,0,901
1	12853415	rs74459295	A	G	167.16	SNP_LowQualityDepth;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=-1.408;DB;DP=43;FS=100.541;MQ=43.55;MQRankSum=-5.135;QD=1.09;ReadPosRankSum=1.105;SOR=3.586	GT:AD:DP:GQ:PL	0/1:37,6:43:99:117,0,1369
1	12853975	rs72472661	G	T	1064.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.754;DB;DP=51;FS=3.212;MQ=42.14;MQRankSum=-7.066;QD=5.43;ReadPosRankSum=1.024;SOR=0.257	GT:AD:DP:GQ:PL	0/1:37,14:51:99:296,0,1359
1	12854021	rs140629685	G	T	4191.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=-0.024;DB;DP=74;FS=7.170;MQ=36.32;MQRankSum=-10.286;QD=15.30;ReadPosRankSum=2.710;SOR=1.344	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1478,0,1499
1	12854022	rs151202400	A	T	4256.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.580;ClippingRankSum=0.253;DB;DP=73;FS=6.876;MQ=36.36;MQRankSum=-9.709;QD=15.42;ReadPosRankSum=2.537;SOR=1.275	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1520,0,1496
1	12854041	rs76280430	T	C	4637.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=-2.611;DB;DP=90;FS=5.444;MQ=36.00;MQRankSum=-11.664;QD=15.26;ReadPosRankSum=-2.071;SOR=1.074	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1621,0,1805
1	12854052	rs78573959	C	T	1396.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.343;DB;DP=97;FS=0.607;MQ=35.94;MQRankSum=-9.444;QD=4.25;ReadPosRankSum=-2.603;SOR=0.749	GT:AD:DP:GQ:PL	0/1:78,19:97:99:254,0,3274
1	12854068	rs79492089	T	C	800.16	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.237;ClippingRankSum=-1.427;DB;DP=107;FS=3.311;MQ=37.03;MQRankSum=-5.746;QD=3.27;ReadPosRankSum=0.184;SOR=1.010	GT:AD:DP:GQ:PL	0/1:83,24:107:99:451,0,3275
1	12854090	rs79698223	T	A	2167.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;ClippingRankSum=0.993;DB;DP=112;FS=1.723;MQ=39.56;MQRankSum=-9.881;QD=6.01;ReadPosRankSum=1.443;SOR=0.571	GT:AD:DP:GQ:PL	0/1:90,22:112:99:692,0,3746
1	12854097	rs76193255	T	C	2083.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.404;ClippingRankSum=1.009;DB;DP=114;FS=3.968;MQ=40.54;MQRankSum=-10.132;QD=5.69;ReadPosRankSum=1.927;SOR=0.480	GT:AD:DP:GQ:PL	0/1:91,23:114:99:689,0,3779
1	12854105	rs76648802	A	G	2053.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.298;DB;DP=116;FS=4.015;MQ=41.04;MQRankSum=-10.116;QD=5.64;ReadPosRankSum=2.066;SOR=0.471	GT:AD:DP:GQ:PL	0/1:93,23:116:99:686,0,3774
1	12854162	rs199893374	C	T	109.16	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=-0.197;DB;DP=85;FS=12.181;MQ=44.30;MQRankSum=-9.048;QD=0.51;ReadPosRankSum=-4.304;SOR=1.174	GT:AD:DP:GQ:PL	0/1:75,10:85:58:58,0,2870
1	12854188	rs76030350	T	C	451.92	SNP_LowQualityDepth;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=-0.405;DB;DP=102;FS=73.778;MQ=40.38;MQRankSum=-9.264;QD=1.39;ReadPosRankSum=-5.803;SOR=2.955	GT:AD:DP:GQ:PL	0/1:88,14:102:99:144,0,3348
1	12854356	rs61775051	T	C	118.19	SNP_LowQualityDepth;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.120;DB;DP=141;FS=60.362;MQ=48.65;MQRankSum=-10.699;QD=0.84;ReadPosRankSum=-6.067;SOR=6.137	GT:AD:DP:GQ:PL	0/1:121,20:141:99:149,0,4769
1	12854414	rs1063769	G	A	645.17	SNP_LowQualityDepth;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;ClippingRankSum=-0.707;DB;DP=151;FS=71.764;MQ=45.92;MQRankSum=-9.708;QD=1.77;ReadPosRankSum=1.818;SOR=5.070	GT:AD:DP:GQ:PL	0/1:130,21:151:99:254,0,4949
1	12854428	rs1769774	C	T	1966.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.592;ClippingRankSum=-0.312;DB;DP=155;FS=14.395;MQ=44.76;MQRankSum=1.051;QD=12.60;ReadPosRankSum=1.356;SOR=1.819	GT:AD:DP:GQ:PL	0/1:97,58:155:99:1997,0,3434
1	12854474	rs1063774	A	C	1247.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=-0.390;DB;DP=140;FS=43.847;MQ=46.80;MQRankSum=-10.592;QD=2.66;ReadPosRankSum=-0.555;SOR=4.475	GT:AD:DP:GQ:PL	0/1:122,18:140:99:360,0,5046
1	12854479	rs1063775	C	G	1055.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=-0.381;DB;DP=135;FS=37.560;MQ=47.80;MQRankSum=-10.274;QD=2.28;ReadPosRankSum=-0.593;SOR=4.060	GT:AD:DP:GQ:PL	0/1:119,16:135:99:293,0,5123
1	12854530	rs1063776	C	G	3679.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.054;DB;DP=103;FS=3.714;MQ=57.66;MQRankSum=-9.088;QD=17.11;ReadPosRankSum=-0.424;SOR=0.941	GT:AD:DP:GQ:PL	0/1:52,51:103:99:1852,0,1963
1	12854544	rs1063778	T	C	1580.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.699;DB;DP=95;FS=3.626;MQ=57.80;MQRankSum=-8.680;QD=16.46;ReadPosRankSum=1.768;SOR=1.079	GT:AD:DP:GQ:PL	0/1:48,47:95:99:1611,0,1763
1	12854713	rs11121979	G	T	612.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.176;DB;DP=47;FS=3.232;MQ=58.39;MQRankSum=0.967;QD=15.30;ReadPosRankSum=2.135;SOR=0.227	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,2046
1	12854716	rs1737150	A	G	560.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=1.141;DB;DP=41;FS=5.177;MQ=58.02;MQRankSum=-5.747;QD=13.66;ReadPosRankSum=1.033;SOR=1.584	GT:AD:DP:GQ:PL	0/1:24,17:41:99:591,0,912
1	12854842	rs11121980	G	C	300.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.234;ClippingRankSum=-0.334;DB;DP=24;FS=12.124;MQ=46.02;MQRankSum=-0.702;QD=12.51;ReadPosRankSum=0.702;SOR=0.742	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,975
1	12854930	rs2744046	T	G	185.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=-0.502;DB;DP=26;FS=4.654;MQ=37.71;MQRankSum=0.858;QD=7.12;ReadPosRankSum=1.052;SOR=1.635	GT:AD:DP:GQ:PL	0/1:19,7:26:99:216,0,635
1	12855644	rs5003729	A	G	3059.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=1.984;DB;DP=116;FS=10.979;MQ=36.79;MQRankSum=-4.746;QD=8.69;ReadPosRankSum=2.579;SOR=0.324	GT:AD:DP:GQ:PL	0/1:85,31:116:99:1121,0,9855
1	12855647	rs200536957	C	T	3089.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=-0.567;DB;DP=126;FS=11.997;MQ=36.76;MQRankSum=-5.438;QD=8.31;ReadPosRankSum=2.137;SOR=0.312	GT:AD:DP:GQ:PL	0/1:92,34:126:99:1151,0,10144
1	12855648	rs200816125	A	G	3092.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=-0.794;DB;DP=125;FS=13.208;MQ=36.68;MQRankSum=-5.772;QD=8.27;ReadPosRankSum=2.452;SOR=0.307	GT:AD:DP:GQ:PL	0/1:91,34:125:99:1151,0,10144
1	12855752	rs80197258	G	A	1332.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=5.789;ClippingRankSum=-1.236;DB;DP=160;FS=51.908;MQ=47.24;MQRankSum=-12.881;QD=2.36;ReadPosRankSum=3.393;SOR=7.941	GT:AD:DP:GQ:PL	0/1:132,28:160:99:782,0,5307
1	12855774	rs75985223	A	G	1896.92	SNP_MQRankSumLow;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=2.782;ClippingRankSum=-2.615;DB;DP=156;FS=70.161;MQ=47.30;MQRankSum=-14.158;QD=3.44;ReadPosRankSum=0.460;SOR=8.524	GT:AD:DP:GQ:PL	0/1:123,33:156:99:944,0,5012
1	12855835	rs1063795	C	G	16511.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=105;FS=0.000;MQ=36.96;QD=29.39;SOR=0.873	GT:AD:DP:GQ:PL	1/1:0,105:105:99:4646,316,0
1	12855845	rs1063797	G	C	16655.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=103;FS=0.000;MQ=36.89;QD=27.62;SOR=0.972	GT:AD:DP:GQ:PL	1/1:0,103:103:99:4670,316,0
1	12855878	rs1052908	A	C	1270.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;ClippingRankSum=-0.014;DB;DP=102;FS=58.837;MQ=38.56;MQRankSum=-3.709;QD=12.45;ReadPosRankSum=-0.065;SOR=4.921	GT:AD:DP:GQ:PL	0/1:62,40:102:99:1301,0,2132
1	12856010	rs61775053	C	G	4797.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=-0.947;DB;DP=121;FS=7.157;MQ=36.52;MQRankSum=-11.019;QD=11.08;ReadPosRankSum=3.341;SOR=1.458	GT:AD:DP:GQ:PL	0/1:59,62:121:99:1802,0,2065
1	12856111	rs61775054	C	T	275.97	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.313;DB;DP=41;FS=6.812;MQ=34.48;MQRankSum=-3.814;QD=2.24;ReadPosRankSum=-0.528;SOR=2.223	GT:AD:DP:GQ:PL	0/1:30,11:41:99:231,0,973
1	12856146	rs1974302	G	A	68.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=1.162;DB;DP=32;FS=0.000;MQ=32.50;MQRankSum=1.193;QD=2.13;ReadPosRankSum=-0.248;SOR=0.062	GT:AD:DP:GQ:PL	0/1:27,5:32:99:99,0,914
1	12856153	rs61775055	G	A	117.08	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=-0.171;DB;DP=31;FS=0.000;MQ=32.39;MQRankSum=-2.650;QD=1.18;ReadPosRankSum=2.288;SOR=0.289	GT:AD:DP:GQ:PL	0/1:24,7:31:99:128,0,798
1	12856219	rs1769781	G	A	33.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.012;DB;DP=19;FS=14.523;MQ=36.75;MQRankSum=-0.345;QD=1.74;ReadPosRankSum=-0.107;SOR=0.000	GT:AD:DP:GQ:PL	0/1:16,3:19:64:64,0,514
1	12856273	rs2493877	A	C	95.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=-0.242;DB;DP=10;FS=0.000;MQ=45.79;MQRankSum=0.945;QD=9.51;ReadPosRankSum=1.384;SOR=0.017	GT:AD:DP:GQ:PL	0/1:6,4:10:99:126,0,219
1	12884615	rs72550060	C	T	518.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=-0.457;DB;DP=31;FS=0.000;MQ=47.09;MQRankSum=-1.820;QD=16.71;ReadPosRankSum=-0.611;SOR=0.236	GT:AD:DP:GQ:PL	0/1:16,15:31:99:549,0,616
1	12885289	rs200907281	G	T	380.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.882;DB;DP=79;FS=7.149;MQ=31.90;MQRankSum=3.599;QD=4.81;ReadPosRankSum=1.294;SOR=3.795	GT:AD:DP:GQ:PL	0/1:63,16:79:99:411,0,2011
1	12887549	rs2994114	T	C	28697.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=1.043;ClippingRankSum=-0.321;DB;DP=213;FS=0.000;MQ=38.21;MQRankSum=-1.732;QD=29.00;ReadPosRankSum=1.033;SOR=0.250	GT:AD:DP:GQ:PL	1/1:1,212:213:99:8375,598,0
1	12888310	rs189212178	A	G	81.27	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.100;DB;DP=45;FS=13.200;MQ=36.66;MQRankSum=1.202;QD=1.11;ReadPosRankSum=-2.189;SOR=0.029	GT:AD:DP:GQ:PL	0/1:41,4:45:37:37,0,1617
1	12888347	rs200693692	G	C	260.93	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=-0.571;DB;DP=49;FS=7.949;MQ=37.13;MQRankSum=-0.216;QD=1.69;ReadPosRankSum=-0.352;SOR=0.144	GT:AD:DP:GQ:PL	0/1:45,4:49:30:30,0,1805
1	12888371	rs200394590	T	G	774.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=-0.166;DB;DP=53;FS=5.804;MQ=37.57;MQRankSum=-0.393;QD=4.19;ReadPosRankSum=-1.704;SOR=1.303	GT:AD:DP:GQ:PL	0/1:44,9:53:99:219,0,1879
1	12888389	rs1830486	A	C	746.13	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.641;DB;DP=58;FS=4.798;MQ=37.71;MQRankSum=0.876;QD=12.65;ReadPosRankSum=-1.512;SOR=1.250	GT:AD:DP:GQ:PL	0/1:33,25:58:99:777,0,1233
1	12888397	rs202156326	C	T	1441.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=-1.948;DB;DP=58;FS=33.180;MQ=37.57;MQRankSum=1.529;QD=6.77;ReadPosRankSum=0.315;SOR=3.275	GT:AD:DP:GQ:PL	0/1:45,13:58:99:403,0,1847
1	12888415	rs200349667	C	T	1700.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=-0.444;DB;DP=58;FS=54.106;MQ=37.24;MQRankSum=0.986;QD=7.73;ReadPosRankSum=0.505;SOR=4.371	GT:AD:DP:GQ:PL	0/1:44,14:58:99:442,0,1781
1	12888472	rs202092704	C	A	770.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.699;ClippingRankSum=0.714;DB;DP=69;FS=1.864;MQ=36.31;MQRankSum=-1.085;QD=11.16;ReadPosRankSum=-1.706;SOR=0.483	GT:AD:DP:GQ:PL	0/1:42,27:69:99:801,0,1496
1	12888476	.	C	T	2394.92	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=4.310;ClippingRankSum=0.081;DP=68;FS=128.037;MQ=36.72;MQRankSum=0.916;QD=9.39;ReadPosRankSum=5.461;SOR=7.798	GT:AD:DP:GQ:PL	0/1:47,21:68:99:651,0,1709
1	12888545	rs2982101	C	T	173.57	SNP_LowQualityDepth;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;ClippingRankSum=-0.619;DB;DP=73;FS=106.873;MQ=51.26;MQRankSum=-6.221;QD=0.96;ReadPosRankSum=-5.074;SOR=6.592	GT:AD:DP:GQ:PL	0/1:64,9:73:99:119,0,2362
1	12888601	rs5772510	G	GC	4913.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.445;DB;DP=44;FS=6.789;MQ=56.24;MQRankSum=1.217;QD=30.90;ReadPosRankSum=1.709;SOR=2.691	GT:AD:DP:GQ:PL	1/1:1,43:44:90:1429,90,0
1	12888706	rs61777005	C	A	3739.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.143;ClippingRankSum=-0.440;DB;DP=63;FS=1.174;MQ=50.36;MQRankSum=-0.403;QD=15.14;ReadPosRankSum=1.490;SOR=0.800	GT:AD:DP:GQ:PL	0/1:38,25:63:99:771,0,1316
1	12890956	rs61777014	T	A	45.88	SNP_MappingQuality	AC=0;AF=0.00;AN=0;DB;DP=2;FS=0.000;MQ=32.57;QD=22.94;SOR=2.303	GT	./.
1	12898472	rs4301642	C	T	7981.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=57.95;QD=26.04;SOR=2.565	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2266,157,0
1	12898654	rs55954336	A	G	8150.13	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.745;DB;DP=74;FS=3.648;MQ=45.60;MQRankSum=0.402;QD=33.54;ReadPosRankSum=-0.066;SOR=0.399	GT:AD:DP:GQ:PL	0/1:39,35:74:99:1209,0,1421
1	12898667	rs55971055	C	G	2907.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.090;ClippingRankSum=-0.313;DB;DP=78;FS=15.106;MQ=41.94;MQRankSum=1.983;QD=17.30;ReadPosRankSum=0.138;SOR=0.234	GT:AD:DP:GQ:PL	0/0:78,0:78:99:0,235,3446
1	12898673	rs4453052	G	T	5706.16	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;ClippingRankSum=1.350;DB;DP=79;FS=25.937;MQ=39.93;MQRankSum=-2.505;QD=24.08;ReadPosRankSum=-0.528;SOR=2.009	GT:AD:DP:GQ:PL	1/1:1,78:79:99:3083,208,0
1	12898702	rs113071546	C	T	1193.13	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.410;DB;DP=72;FS=4.313;MQ=38.21;MQRankSum=-1.407;QD=16.57;ReadPosRankSum=-1.569;SOR=1.143	GT:AD:DP:GQ:PL	0/1:35,37:72:99:1224,0,1194
1	12898775	rs61775386	C	G	4149.90	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.009;ClippingRankSum=0.085;DB;DP=66;FS=21.958;MQ=40.60;MQRankSum=-1.793;QD=29.02;ReadPosRankSum=0.517;SOR=2.278	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2986,205,0
1	12898778	rs61775387	T	A	4165.90	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.594;ClippingRankSum=-0.752;DB;DP=65;FS=24.639;MQ=40.81;MQRankSum=-1.880;QD=29.76;ReadPosRankSum=0.713;SOR=2.598	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2960,202,0
1	12898783	rs138681878	G	A	716.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.356;ClippingRankSum=-0.850;DB;DP=67;FS=0.000;MQ=41.12;MQRankSum=-3.786;QD=13.26;ReadPosRankSum=0.801;SOR=0.614	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,205,3031
1	12898810	rs71647070	T	C	1341.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=-1.625;DB;DP=52;FS=1.356;MQ=40.99;MQRankSum=-6.331;QD=13.41;ReadPosRankSum=0.477;SOR=1.013	GT:AD:DP:GQ:PL	0/1:30,22:52:99:742,0,1118
1	12898833	rs147676792	G	C	2268.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.020;ClippingRankSum=-1.163;DB;DP=41;FS=0.000;MQ=40.18;MQRankSum=2.332;QD=16.32;ReadPosRankSum=-0.065;SOR=0.702	GT:AD:DP:GQ:PL	0/1:16,25:41:99:929,0,563
1	12907169	rs5027836	A	G	259.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=0.791;DB;DP=33;FS=0.000;MQ=44.76;MQRankSum=-3.324;QD=3.25;ReadPosRankSum=-1.349;SOR=0.188	GT:AD:DP:GQ:PL	0/1:28,5:33:90:90,0,1055
1	12907199	rs5027837	T	A	855.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;ClippingRankSum=-0.792;DB;DP=34;FS=0.000;MQ=39.19;MQRankSum=-2.965;QD=7.57;ReadPosRankSum=-0.186;SOR=0.981	GT:AD:DP:GQ:PL	0/1:27,7:34:99:156,0,963
1	12907212	rs5027838	T	A	1240.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.480;DB;DP=35;FS=2.591;MQ=37.48;MQRankSum=-1.906;QD=9.40;ReadPosRankSum=0.783;SOR=1.738	GT:AD:DP:GQ:PL	0/1:27,8:35:99:190,0,928
1	12907277	.	C	T	122.16	SNP_LowQualityDepth;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.520;ClippingRankSum=-0.738;DP=78;FS=0.000;MQ=48.05;MQRankSum=-4.194;QD=0.60;ReadPosRankSum=-0.391;SOR=0.521	GT:AD:DP:GQ:PL	0/0:78,0:78:99:0,237,4965
1	12907282	rs139731855	G	C	4281.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.315;ClippingRankSum=1.318;DB;DP=84;FS=4.404;MQ=48.91;MQRankSum=-11.224;QD=14.61;ReadPosRankSum=-0.863;SOR=1.247	GT:AD:DP:GQ:PL	0/1:47,37:84:99:1496,0,3602
1	12907284	rs149796618	T	C	4440.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=-0.362;DB;DP=86;FS=2.959;MQ=49.10;MQRankSum=-11.491;QD=14.85;ReadPosRankSum=-1.181;SOR=1.065	GT:AD:DP:GQ:PL	0/1:47,39:86:99:1532,0,3599
1	12907285	rs148930640	G	C	4402.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.898;DB;DP=87;FS=1.775;MQ=49.28;MQRankSum=-11.587;QD=14.44;ReadPosRankSum=-1.321;SOR=0.954	GT:AD:DP:GQ:PL	0/1:47,40:87:99:1532,0,3599
1	12907316	rs112607517	T	C	4871.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=-0.275;DB;DP=120;FS=12.170;MQ=51.76;MQRankSum=-15.837;QD=12.99;ReadPosRankSum=1.363;SOR=0.268	GT:AD:DP:GQ:PL	0/1:69,51:120:99:1733,0,2634
1	12907350	rs2359486	C	T	4256.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=1.019;DB;DP=117;FS=5.158;MQ=53.68;MQRankSum=-15.057;QD=12.37;ReadPosRankSum=3.058;SOR=0.432	GT:AD:DP:GQ:PL	0/1:81,36:117:99:1265,0,3842
1	12907351	rs2359485	A	G	4250.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.878;ClippingRankSum=1.717;DB;DP=118;FS=5.126;MQ=53.76;MQRankSum=-15.111;QD=12.29;ReadPosRankSum=2.980;SOR=0.435	GT:AD:DP:GQ:PL	0/1:82,36:118:99:1259,0,4014
1	12907370	rs2076063	A	T	2884.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.646;ClippingRankSum=0.661;DB;DP=119;FS=5.243;MQ=54.39;MQRankSum=-12.331;QD=8.20;ReadPosRankSum=1.513;SOR=0.419	GT:AD:DP:GQ:PL	0/1:95,24:119:99:758,0,5540
1	12907379	rs74055698	T	C	3751.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.391;DB;DP=110;FS=3.030;MQ=53.26;MQRankSum=-9.260;QD=11.00;ReadPosRankSum=-3.408;SOR=0.508	GT:AD:DP:GQ:PL	0/1:91,19:110:99:525,0,3497
1	12907380	rs141207681	C	A	2176.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.969;DB;DP=112;FS=0.559;MQ=52.99;MQRankSum=-10.864;QD=6.33;ReadPosRankSum=-2.515;SOR=0.611	GT:AD:DP:GQ:PL	0/1:93,19:112:99:538,0,5634
1	12907385	rs150590256	G	A	2260.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=-0.193;DB;DP=115;FS=1.924;MQ=52.23;MQRankSum=-10.311;QD=6.55;ReadPosRankSum=-4.553;SOR=0.531	GT:AD:DP:GQ:PL	0/1:97,18:115:99:584,0,5676
1	12907400	rs149302457	G	A	1662.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.297;DB;DP=110;FS=8.158;MQ=49.64;MQRankSum=-10.865;QD=4.70;ReadPosRankSum=-7.263;SOR=0.339	GT:AD:DP:GQ:PL	0/1:99,11:110:99:251,0,6028
1	12907408	rs146075045	T	A	1386.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170;ClippingRankSum=0.684;DB;DP=119;FS=8.997;MQ=48.17;MQRankSum=-11.052;QD=3.65;ReadPosRankSum=-7.037;SOR=0.335	GT:AD:DP:GQ:PL	0/1:106,13:119:99:170,0,6119
1	12907438	rs115476478	A	G	1891.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.613;DB;DP=124;FS=20.216;MQ=44.06;MQRankSum=-10.006;QD=4.25;ReadPosRankSum=1.847;SOR=1.230	GT:AD:DP:GQ:PL	0/1:108,16:124:99:338,0,5853
1	12907446	rs116578678	C	T	2148.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;ClippingRankSum=0.355;DB;DP=128;FS=19.309;MQ=42.91;MQRankSum=-9.937;QD=4.63;ReadPosRankSum=3.378;SOR=1.288	GT:AD:DP:GQ:PL	0/1:108,20:128:99:509,0,5810
1	12907450	rs148279364	T	C	2211.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.768;ClippingRankSum=0.302;DB;DP=126;FS=21.590;MQ=42.23;MQRankSum=-10.040;QD=4.75;ReadPosRankSum=3.695;SOR=1.252	GT:AD:DP:GQ:PL	0/1:105,21:126:99:581,0,5950
1	12907457	rs9724654	A	G	2469.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.293;ClippingRankSum=-0.031;DB;DP=136;FS=20.938;MQ=41.21;MQRankSum=-9.679;QD=5.12;ReadPosRankSum=3.995;SOR=1.371	GT:AD:DP:GQ:PL	0/1:114,22:136:99:572,0,5833
1	12907458	rs200282759	T	A	2508.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.185;DB;DP=135;FS=22.979;MQ=41.13;MQRankSum=-9.533;QD=5.19;ReadPosRankSum=4.039;SOR=1.403	GT:AD:DP:GQ:PL	0/1:113,22:135:99:614,0,5785
1	12907465	.	A	G	2850.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=1.543;DP=139;FS=26.570;MQ=40.01;MQRankSum=-8.997;QD=5.85;ReadPosRankSum=3.032;SOR=1.486	GT:AD:DP:GQ:PL	0/1:112,27:139:99:821,0,5567
1	12907469	rs200710956	C	G	3201.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.116;DB;DP=138;FS=31.092;MQ=39.37;MQRankSum=-8.565;QD=6.48;ReadPosRankSum=1.550;SOR=1.612	GT:AD:DP:GQ:PL	0/1:110,28:138:99:830,0,5131
1	12907483	rs142509787	T	A	4088.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=1.610;DB;DP=148;FS=43.232;MQ=38.93;MQRankSum=-8.685;QD=8.00;ReadPosRankSum=-1.947;SOR=2.086	GT:AD:DP:GQ:PL	0/1:112,36:148:99:1318,0,4918
1	12907495	rs6669073	T	C	4319.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=-2.627;DB;DP=157;FS=39.670;MQ=38.47;MQRankSum=-8.116;QD=8.31;ReadPosRankSum=-2.077;SOR=2.216	GT:AD:DP:GQ:PL	0/1:114,43:157:99:1495,0,4780
1	12907498	rs6702440	C	T	4253.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.149;DB;DP=155;FS=39.670;MQ=38.46;MQRankSum=-6.824;QD=8.24;ReadPosRankSum=-1.815;SOR=2.178	GT:AD:DP:GQ:PL	0/1:112,43:155:99:1540,0,4735
1	12907507	rs12409975	C	T	4421.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.237;DB;DP=159;FS=49.813;MQ=37.97;MQRankSum=-6.434;QD=8.37;ReadPosRankSum=-0.310;SOR=2.345	GT:AD:DP:GQ:PL	0/1:115,44:159:99:1567,0,4942
1	12907508	rs138145027	T	C	4376.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.848;ClippingRankSum=-1.168;DB;DP=160;FS=52.517;MQ=37.96;MQRankSum=-5.017;QD=8.32;ReadPosRankSum=-0.972;SOR=2.402	GT:AD:DP:GQ:PL	0/1:114,46:160:99:1561,0,5026
1	12907513	rs201121299	T	C	4394.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.622;DB;DP=168;FS=50.553;MQ=37.83;MQRankSum=-4.949;QD=8.20;ReadPosRankSum=0.783;SOR=2.259	GT:AD:DP:GQ:PL	0/1:122,46:168:99:1678,0,5139
1	12907518	rs201750607	T	A	4219.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.926;DB;DP=174;FS=49.571;MQ=37.98;MQRankSum=-3.059;QD=7.95;ReadPosRankSum=0.919;SOR=2.026	GT:AD:DP:GQ:PL	0/1:124,50:174:99:1723,0,5094
1	12907519	rs6702447	C	A	4138.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=1.118;DB;DP=173;FS=43.543;MQ=38.05;MQRankSum=-3.423;QD=7.72;ReadPosRankSum=2.182;SOR=1.973	GT:AD:DP:GQ:PL	0/1:124,49:173:99:1723,0,5094
1	12907612	rs2994091	A	T	1226.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;ClippingRankSum=0.492;DB;DP=177;FS=9.255;MQ=51.65;MQRankSum=-13.526;QD=2.14;ReadPosRankSum=0.974;SOR=0.548	GT:AD:DP:GQ:PL	0/1:152,25:177:99:532,0,11601
1	12907620	rs2994092	A	G	817.92	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;ClippingRankSum=0.700;DB;DP=171;FS=11.950;MQ=53.44;MQRankSum=-11.994;QD=1.44;ReadPosRankSum=2.902;SOR=0.795	GT:AD:DP:GQ:PL	0/1:156,15:171:99:262,0,11840
1	12907777	rs28391533	T	C	6808.92	SNP_MQRankSumLow;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.176;DB;DP=253;FS=78.905;MQ=46.97;MQRankSum=-18.151;QD=7.96;ReadPosRankSum=-0.356;SOR=4.804	GT:AD:DP:GQ:PL	0/1:201,52:253:99:1617,0,8227
1	12907781	rs28441396	T	C	7684.92	SNP_MQRankSumLow;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.073;ClippingRankSum=1.774;DB;DP=248;FS=78.563;MQ=46.22;MQRankSum=-17.619;QD=8.99;ReadPosRankSum=-1.391;SOR=4.755	GT:AD:DP:GQ:PL	0/1:193,55:248:99:1836,0,8121
1	12907798	rs150096254	A	C	11683.92	SNP_MQRankSumLow;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=-0.097;DB;DP=276;FS=97.592;MQ=43.06;MQRankSum=-14.039;QD=12.43;ReadPosRankSum=-2.028;SOR=4.964	GT:AD:DP:GQ:PL	0/1:196,80:276:99:2958,0,8268
1	12907800	rs201112865	A	G	206.16	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.439;DB;DP=284;FS=20.379;MQ=42.78;MQRankSum=-3.556;QD=0.30;ReadPosRankSum=-0.731;SOR=4.475	GT:AD:DP:GQ:PL	0/1:256,28:284:99:178,0,10237
1	12907802	rs138087690	C	T	12475.92	SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370;ClippingRankSum=0.114;DB;DP=287;FS=104.925;MQ=42.65;MQRankSum=-12.218;QD=12.92;ReadPosRankSum=-2.198;SOR=5.246	GT:AD:DP:GQ:PL	0/1:197,90:287:99:3270,0,8261
1	12907803	rs141460546	C	T	12415.92	SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;ClippingRankSum=-0.154;DB;DP=293;FS=104.943;MQ=42.71;MQRankSum=-11.987;QD=12.73;ReadPosRankSum=-2.125;SOR=5.277	GT:AD:DP:GQ:PL	0/1:200,93:293:99:3282,0,8093
1	12907837	rs1736811	C	T	17915.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.425;ClippingRankSum=1.015;DB;DP=308;FS=52.187;MQ=49.51;MQRankSum=-4.993;QD=15.58;ReadPosRankSum=0.494;SOR=2.909	GT:AD:DP:GQ:PL	0/1:167,141:308:99:4634,0,6132
1	12907885	rs848418	T	C	25679.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;ClippingRankSum=-0.383;DB;DP=444;FS=39.096;MQ=52.41;MQRankSum=5.197;QD=16.89;ReadPosRankSum=-1.878;SOR=0.082	GT:AD:DP:GQ:PL	0/1:215,229:444:99:8320,0,7459
1	12908234	rs12568448	C	T	1381.13	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.577;DB;DP=240;FS=2.954;MQ=39.65;MQRankSum=-0.850;QD=5.83;ReadPosRankSum=0.714;SOR=0.130	GT:AD:DP:GQ:PL	0/0:240,0:240:99:0,728,10507
1	12908236	rs1736809	G	T	17451.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;ClippingRankSum=0.961;DB;DP=234;FS=1.208;MQ=39.81;MQRankSum=-8.248;QD=21.13;ReadPosRankSum=-2.148;SOR=1.153	GT:AD:DP:GQ:PL	0/1:118,116:234:99:4453,0,4980
1	12908243	rs1736808	A	G	17757.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.517;ClippingRankSum=1.320;DB;DP=239;FS=3.805;MQ=40.92;MQRankSum=-8.698;QD=21.34;ReadPosRankSum=1.466;SOR=1.496	GT:AD:DP:GQ:PL	0/1:123,116:239:99:4525,0,5052
1	12908278	rs3860363	C	A	2601.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.473;ClippingRankSum=-0.692;DB;DP=267;FS=0.000;MQ=46.69;MQRankSum=-10.381;QD=4.45;ReadPosRankSum=-1.673;SOR=0.097	GT:AD:DP:GQ:PL	0/0:267,0:267:99:0,800,10905
1	12908311	rs6657053	C	G	766.16	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.043;DB;DP=247;FS=0.000;MQ=51.33;MQRankSum=-6.589;QD=1.41;ReadPosRankSum=-2.119;SOR=0.022	GT:AD:DP:GQ:PL	0/0:247,0:247:99:0,740,10175
1	12908375	rs61775392	T	C	10226.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=-0.664;DB;DP=146;FS=0.000;MQ=52.96;MQRankSum=-10.409;QD=20.66;ReadPosRankSum=-2.198;SOR=0.858	GT:AD:DP:GQ:PL	0/1:76,70:146:99:2662,0,2872
1	12908384	rs144125074	G	GA	9082.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0.268;DB;DP=127;FS=0.000;MQ=52.13;MQRankSum=-12.777;QD=21.12;ReadPosRankSum=-2.522;SOR=0.853	GT:AD:DP:GQ:PL	0/1:65,62:127:99:2360,0,2620
1	12908424	.	G	GA	4114.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.674;DP=60;FS=0.000;MQ=53.01;MQRankSum=-8.952;QD=17.22;ReadPosRankSum=1.721;SOR=1.014	GT:AD:DP:GQ:PL	0/1:35,25:60:99:799,0,1190
1	12908444	rs79992585	T	C	3554.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=-0.095;DB;DP=36;FS=0.000;MQ=53.74;MQRankSum=-5.493;QD=25.21;ReadPosRankSum=2.300;SOR=1.147	GT:AD:DP:GQ:PL	0/1:21,15:36:99:674,0,852
1	12908449	rs79286318	T	C	3082.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=-0.035;DB;DP=29;FS=0.000;MQ=53.70;MQRankSum=-5.201;QD=25.69;ReadPosRankSum=1.698;SOR=1.266	GT:AD:DP:GQ:PL	0/1:15,14:29:99:576,0,711
1	12908450	.	G	T	2968.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=-0.376;DP=29;FS=0.000;MQ=53.53;MQRankSum=-5.458;QD=25.38;ReadPosRankSum=1.083;SOR=1.362	GT:AD:DP:GQ:PL	0/1:15,14:29:99:543,0,588
1	12908452	rs78763332	C	T	2939.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=-0.327;DB;DP=27;FS=0.000;MQ=53.49;MQRankSum=-4.581;QD=25.56;ReadPosRankSum=1.043;SOR=1.322	GT:AD:DP:GQ:PL	0/1:13,14:27:99:543,0,588
1	12908453	rs41279494	G	A	226.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.394;DB;DP=27;FS=0.000;MQ=53.51;MQRankSum=0.794;QD=5.52;ReadPosRankSum=-0.697;SOR=0.009	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1191
1	12908474	.	G	A	1844.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.379;DP=21;FS=3.565;MQ=57.43;MQRankSum=0.432;QD=24.60;ReadPosRankSum=-0.197;SOR=2.053	GT:AD:DP:GQ:PL	0/1:12,9:21:99:342,0,477
1	12908476	.	T	G	1634.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.326;DP=20;FS=3.680;MQ=57.57;MQRankSum=-0.160;QD=23.36;ReadPosRankSum=-0.860;SOR=2.137	GT:AD:DP:GQ:PL	0/1:12,8:20:99:342,0,477
1	12908480	.	G	C	1481.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.753;DP=17;FS=3.632;MQ=57.57;MQRankSum=0.142;QD=24.70;ReadPosRankSum=-1.723;SOR=2.110	GT:AD:DP:GQ:PL	0/1:10,7:17:99:264,0,399
1	12908482	.	C	T	1319.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723;ClippingRankSum=0.453;DP=17;FS=3.729;MQ=57.64;MQRankSum=-0.637;QD=22.37;ReadPosRankSum=-2.293;SOR=2.179	GT:AD:DP:GQ:PL	0/1:10,7:17:99:264,0,399
1	12908499	.	A	C	494.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=-0.166;DP=8;FS=0.000;MQ=55.90;MQRankSum=-1.124;QD=15.00;ReadPosRankSum=-1.897;SOR=1.085	GT:AD:DP:GQ:PL	0/1:6,2:8:66:66,0,246
1	12908500	.	G	C	497.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;ClippingRankSum=1.615;DP=8;FS=0.000;MQ=55.77;MQRankSum=-1.343;QD=15.56;ReadPosRankSum=-1.615;SOR=0.990	GT:AD:DP:GQ:PL	0/1:6,2:8:66:66,0,246
1	12918675	rs146224081	CCAGCAG	C	1840.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.891;ClippingRankSum=0.929;DB;DP=43;FS=0.000;MQ=60.12;MQRankSum=0.807;QD=17.87;ReadPosRankSum=0.023;SOR=0.685	GT:AD:DP:GQ:PL	0/1:17,26:43:99:1026,0,1170
1	12918819	rs9659511	C	T	1313.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.784;ClippingRankSum=-0.066;DB;DP=71;FS=0.645;MQ=59.91;MQRankSum=-1.276;QD=14.43;ReadPosRankSum=1.904;SOR=0.784	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,213,3007
1	12918963	rs9661554	G	T	1187.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.222;ClippingRankSum=-0.240;DB;DP=72;FS=0.669;MQ=52.19;MQRankSum=2.172;QD=14.13;ReadPosRankSum=-1.649;SOR=0.600	GT:AD:DP:GQ:PL	0/0:72,0:72:99:0,216,3053
1	12919064	rs3204790	T	G	1753.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.887;DB;DP=87;FS=1.304;MQ=59.89;MQRankSum=-1.697;QD=17.89;ReadPosRankSum=0.979;SOR=0.551	GT:AD:DP:GQ:PL	0/0:87,0:87:99:0,261,3719
1	12919079	rs9659529	C	G	1583.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.684;ClippingRankSum=-0.237;DB;DP=88;FS=0.000;MQ=59.94;MQRankSum=0.061;QD=17.59;ReadPosRankSum=-0.297;SOR=0.620	GT:AD:DP:GQ:PL	0/0:88,0:88:99:0,265,3760
1	12919173	rs9308464	A	G	602.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.979;ClippingRankSum=-0.153;DB;DP=52;FS=11.818;MQ=51.64;MQRankSum=-4.013;QD=14.00;ReadPosRankSum=0.802;SOR=0.015	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,2227
1	12919422	rs74056157	T	C	3957.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.168;DB;DP=80;FS=9.414;MQ=55.07;MQRankSum=-0.161;QD=18.32;ReadPosRankSum=4.091;SOR=0.237	GT:AD:DP:GQ:PL	0/1:37,43:80:99:1675,0,1439
1	12919423	rs74056158	G	A	3957.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.617;ClippingRankSum=0.179;DB;DP=78;FS=9.569;MQ=54.92;MQRankSum=0.644;QD=18.41;ReadPosRankSum=3.661;SOR=0.240	GT:AD:DP:GQ:PL	0/1:37,41:78:99:1675,0,1439
1	12919459	rs139219724	G	T	748.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=-0.371;DB;DP=67;FS=2.762;MQ=51.90;MQRankSum=3.191;QD=4.23;ReadPosRankSum=-3.256;SOR=0.344	GT:AD:DP:GQ:PL	0/1:54,13:67:99:303,0,2234
1	12919482	rs76110183	G	C	686.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=-0.549;DB;DP=62;FS=27.824;MQ=50.87;MQRankSum=-3.784;QD=3.65;ReadPosRankSum=-5.604;SOR=0.045	GT:AD:DP:GQ:PL	0/1:53,9:62:99:189,0,2211
1	12919505	rs76317893	G	T	85.30	SNP_LowQualityDepth;SNP_StrandBias;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.231;ClippingRankSum=-0.172;DB;DP=71;FS=101.752;MQ=50.78;MQRankSum=-6.004;QD=1.09;ReadPosRankSum=-0.471;SOR=5.667	GT:AD:DP:GQ:PL	0/0:67,4:71:49:0,49,3060
1	12919506	rs200021090	A	T	118.22	SNP_LowQualityDepth;SNP_StrandBias;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.428;DB;DP=74;FS=95.461;MQ=50.87;MQRankSum=-5.976;QD=1.54;ReadPosRankSum=0.254;SOR=5.545	GT:AD:DP:GQ:PL	0/0:70,4:74:46:0,46,3015
1	12919511	rs1856641	C	T	121.22	SNP_LowQualityDepth;SNP_StrandBias;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.134;ClippingRankSum=-0.428;DB;DP=71;FS=105.165;MQ=51.02;MQRankSum=-6.239;QD=1.44;ReadPosRankSum=0.452;SOR=5.781	GT:AD:DP:GQ:PL	0/0:67,4:71:43:0,43,2965
1	12919525	rs138699965	C	T	538.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.094;ClippingRankSum=-0.382;DB;DP=75;FS=0.000;MQ=50.30;MQRankSum=-6.403;QD=8.54;ReadPosRankSum=-0.549;SOR=0.743	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,226,3244
1	12919536	rs79732422	C	T	309.65	SNP_StrandBias;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.794;ClippingRankSum=-2.471;DB;DP=80;FS=103.812;MQ=48.96;MQRankSum=-5.689;QD=3.01;ReadPosRankSum=1.736;SOR=6.356	GT:AD:DP:GQ:PL	0/0:76,4:80:75:0,75,3277
1	12919574	rs78738981	T	A	736.92	SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;ClippingRankSum=-0.659;DB;DP=97;FS=129.235;MQ=44.25;MQRankSum=-7.535;QD=2.48;ReadPosRankSum=0.820;SOR=7.167	GT:AD:DP:GQ:PL	0/1:86,11:97:99:239,0,3637
1	12919581	.	T	C	708.92	SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.555;ClippingRankSum=-0.054;DP=101;FS=133.268;MQ=43.61;MQRankSum=-7.343;QD=2.28;ReadPosRankSum=0.606;SOR=7.222	GT:AD:DP:GQ:PL	0/1:89,12:101:99:224,0,3847
1	12919587	rs17400817	T	C	2532.92	SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;ClippingRankSum=-0.178;DB;DP=99;FS=93.601;MQ=43.72;MQRankSum=-8.218;QD=8.07;ReadPosRankSum=2.027;SOR=2.398	GT:AD:DP:GQ:PL	0/1:85,14:99:99:373,0,3306
1	12919589	.	A	G	491.92	SNP_LowQualityDepth;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.861;DP=99;FS=115.434;MQ=43.68;MQRankSum=-7.030;QD=1.57;ReadPosRankSum=1.835;SOR=7.053	GT:AD:DP:GQ:PL	0/1:90,9:99:99:101,0,3824
1	12919623	rs75838083	C	T	1639.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.984;ClippingRankSum=-0.098;DB;DP=86;FS=8.548;MQ=46.61;MQRankSum=2.538;QD=18.63;ReadPosRankSum=-0.604;SOR=1.312	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,259,3870
1	12919624	rs80027487	C	G	1639.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.223;ClippingRankSum=0.247;DB;DP=86;FS=8.548;MQ=46.61;MQRankSum=2.652;QD=18.63;ReadPosRankSum=-0.545;SOR=1.312	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,262,3911
1	12919642	rs142476002	G	A	572.10	SNP_LowQualityDepth;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=-0.014;DB;DP=83;FS=141.492;MQ=48.95;MQRankSum=-9.700;QD=1.84;ReadPosRankSum=-0.644;SOR=7.327	GT:AD:DP:GQ:PL	0/1:67,16:83:99:386,0,2615
1	12919672	rs139382628	T	C	450.30	SNP_LowQualityDepth;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=-2.232;DB;DP=81;FS=97.815;MQ=49.42;MQRankSum=-8.850;QD=1.55;ReadPosRankSum=0.143;SOR=6.932	GT:AD:DP:GQ:PL	0/1:65,16:81:99:456,0,2729
1	12919682	rs202143308	C	T	371.27	SNP_LowQualityDepth;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=-0.619;DB;DP=80;FS=83.562;MQ=49.85;MQRankSum=-8.199;QD=1.95;ReadPosRankSum=0.731;SOR=6.665	GT:AD:DP:GQ:PL	0/1:66,14:80:99:386,0,2730
1	12919928	rs72472698	A	G	2145.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.401;ClippingRankSum=-1.236;DB;DP=96;FS=15.227;MQ=59.84;MQRankSum=-0.065;QD=17.88;ReadPosRankSum=0.832;SOR=1.283	GT:AD:DP:GQ:PL	0/0:96,0:96:99:0,298,6335
1	12919934	rs3204805	A	G	2252.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.199;ClippingRankSum=-1.345;DB;DP=97;FS=15.019;MQ=59.84;MQRankSum=0.766;QD=18.46;ReadPosRankSum=-0.370;SOR=1.152	GT:AD:DP:GQ:PL	0/0:97,0:97:99:0,298,6352
1	12919963	rs72472699	T	G	1803.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.784;ClippingRankSum=0.096;DB;DP=89;FS=10.230;MQ=59.78;MQRankSum=0.034;QD=15.03;ReadPosRankSum=-0.605;SOR=0.458	GT:AD:DP:GQ:PL	0/0:89,0:89:99:0,267,3730
1	12920067	rs17038709	C	G	1579.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.272;ClippingRankSum=-0.653;DB;DP=82;FS=8.813;MQ=57.91;MQRankSum=1.641;QD=17.35;ReadPosRankSum=-1.036;SOR=1.750	GT:AD:DP:GQ:PL	0/0:82,0:82:99:0,246,3422
1	12920440	rs9729325	G	A	226.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.447;ClippingRankSum=-0.871;DB;DP=29;FS=5.417;MQ=35.73;MQRankSum=-0.476;QD=10.28;ReadPosRankSum=0.769;SOR=1.822	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,1085
1	12920580	rs9726436	C	G	119.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.052;DB;DP=18;FS=0.000;MQ=59.61;MQRankSum=-1.344;QD=6.62;ReadPosRankSum=1.810;SOR=0.379	GT:AD:DP:GQ:PL	0/0:18,0:18:54:0,54,786
1	12921110	rs12139546	A	G	1856.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.844;ClippingRankSum=-0.292;DB;DP=100;FS=2.241;MQ=58.02;MQRankSum=0.518;QD=18.94;ReadPosRankSum=1.038;SOR=0.494	GT:AD:DP:GQ:PL	0/0:100,0:100:99:0,301,4318
1	12921127	rs12139549	A	G	2176.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.168;ClippingRankSum=-0.716;DB;DP=110;FS=3.811;MQ=59.51;MQRankSum=-2.100;QD=19.60;ReadPosRankSum=0.521;SOR=0.441	GT:AD:DP:GQ:PL	0/0:110,0:110:99:0,337,7892
1	12921132	rs12139550	A	G	2214.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.937;ClippingRankSum=0.678;DB;DP=106;FS=5.768;MQ=59.68;MQRankSum=-4.157;QD=20.50;ReadPosRankSum=0.475;SOR=0.390	GT:AD:DP:GQ:PL	0/0:106,0:106:99:0,334,7860
1	12921332	rs17039307	T	C	2839.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.320;ClippingRankSum=0.063;DB;DP=142;FS=7.447;MQ=57.53;MQRankSum=-12.499;QD=21.51;ReadPosRankSum=0.883;SOR=0.496	GT:AD:DP:GQ:PL	0/0:136,6:142:99:0,198,5469
1	12921333	rs56145411	G	A	2567.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.072;DB;DP=142;FS=3.693;MQ=57.37;MQRankSum=-11.429;QD=19.30;ReadPosRankSum=0.619;SOR=0.375	GT:AD:DP:GQ:PL	0/0:142,0:142:99:0,430,8495
1	12921499	rs148455874	C	G	131.14	SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=-1.359;DB;DP=103;FS=219.475;MQ=38.84;MQRankSum=-8.077;QD=0.60;ReadPosRankSum=-1.468;SOR=7.111	GT:AD:DP:GQ:PL	0/1:90,13:103:86:86,0,3411
1	12921539	rs142594496	T	G	796.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.625;ClippingRankSum=2.129;DB;DP=59;FS=17.952;MQ=41.81;MQRankSum=-7.462;QD=15.92;ReadPosRankSum=0.423;SOR=3.550	GT:AD:DP:GQ:PL	0/0:56,3:59:82:0,82,2214
1	12921576	rs143879460	C	T	737.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.804;ClippingRankSum=1.136;DB;DP=47;FS=0.000;MQ=39.80;MQRankSum=-4.404;QD=19.40;ReadPosRankSum=0.698;SOR=0.632	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1862
1	12921635	rs144099057	G	A	253.13	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=1.075;DB;DP=60;FS=4.378;MQ=35.18;MQRankSum=-2.376;QD=4.22;ReadPosRankSum=0.891;SOR=0.057	GT:AD:DP:GQ:PL	0/1:46,14:60:99:284,0,1683
1	12921642	rs2994093	G	A	452.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=-1.079;DB;DP=60;FS=7.429;MQ=34.69;MQRankSum=-5.743;QD=3.26;ReadPosRankSum=-2.413;SOR=0.059	GT:AD:DP:GQ:PL	0/1:49,11:60:99:170,0,1727
1	12921651	rs58396794	G	A	146.13	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=62;FS=0.000;MQ=34.38;MQRankSum=0.437;QD=4.87;ReadPosRankSum=-0.359;SOR=0.015	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,188,2409
1	12921716	rs2994094	A	G	988.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=-0.584;DB;DP=61;FS=2.667;MQ=34.59;MQRankSum=-6.474;QD=7.06;ReadPosRankSum=0.808;SOR=0.202	GT:AD:DP:GQ:PL	0/1:44,17:61:99:335,0,1512
1	12921899	rs79898660	C	G	115.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=1.368;DB;DP=5;FS=3.979;MQ=48.78;MQRankSum=-2.017;QD=16.51;ReadPosRankSum=2.017;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:74:106,0,74
1	12921916	rs76136423	A	G	156.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.684;DB;DP=5;FS=3.979;MQ=48.14;MQRankSum=-1.920;QD=19.57;ReadPosRankSum=-1.517;SOR=0.582	GT:AD:DP:GQ:PL	0/1:2,3:5:73:103,0,73
1	12939159	rs143272699	C	T	183.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.034;ClippingRankSum=-0.586;DB;DP=24;FS=0.000;MQ=29.73;MQRankSum=0.471;QD=11.45;ReadPosRankSum=1.574;SOR=0.127	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,830
1	12939303	.	G	A	327.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.034;DP=28;FS=0.000;MQ=33.91;MQRankSum=0.559;QD=9.91;ReadPosRankSum=1.281;SOR=0.259	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,1019
1	12939426	rs200198132	T	C	727.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.294;DB;DP=90;FS=8.606;MQ=28.76;MQRankSum=-3.968;QD=11.02;ReadPosRankSum=0.554;SOR=0.130	GT:AD:DP:GQ:PL	0/0:89,1:90:99:0,231,3886
1	12939440	rs145987835	C	G	837.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.581;DB;DP=92;FS=7.964;MQ=27.72;MQRankSum=-4.164;QD=12.68;ReadPosRankSum=-1.457;SOR=0.138	GT:AD:DP:GQ:PL	0/0:91,1:92:99:0,235,3912
1	12939467	rs140105230	C	T	747.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.675;DB;DP=118;FS=4.722;MQ=30.44;MQRankSum=-1.761;QD=7.78;ReadPosRankSum=1.212;SOR=0.309	GT:AD:DP:GQ:PL	0/0:117,1:118:99:0,325,3803
1	12939510	rs76993476	C	T	971.92	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.950;ClippingRankSum=-0.648;DB;DP=174;FS=47.981;MQ=34.67;MQRankSum=-7.376;QD=1.92;ReadPosRankSum=1.001;SOR=6.066	GT:AD:DP:GQ:PL	0/1:144,30:174:99:451,0,4739
1	12939548	rs77695621	G	C	3599.92	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;ClippingRankSum=0.354;DB;DP=212;FS=98.852;MQ=36.60;MQRankSum=-10.635;QD=5.83;ReadPosRankSum=1.357;SOR=8.262	GT:AD:DP:GQ:PL	0/1:161,51:212:99:1606,0,6159
1	12939562	rs74848993	G	C	2565.92	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=5.290;ClippingRankSum=0.138;DB;DP=199;FS=71.494;MQ=35.73;MQRankSum=-9.696;QD=4.36;ReadPosRankSum=4.198;SOR=6.294	GT:AD:DP:GQ:PL	0/1:155,44:199:99:1364,0,6257
1	12939664	rs78455617	A	T	1616.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.810;ClippingRankSum=1.243;DB;DP=128;FS=3.165;MQ=31.35;MQRankSum=-4.880;QD=13.25;ReadPosRankSum=0.735;SOR=0.858	GT:AD:DP:GQ:PL	0/0:128,0:128:99:0,388,5695
1	12939674	rs72474510	C	G	1597.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.236;ClippingRankSum=2.385;DB;DP=138;FS=7.967;MQ=31.46;MQRankSum=-4.063;QD=12.98;ReadPosRankSum=1.012;SOR=1.467	GT:AD:DP:GQ:PL	0/0:138,0:138:99:0,418,5962
1	12939733	rs201493416	G	A	1092.92	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.396;ClippingRankSum=-0.120;DB;DP=183;FS=50.521;MQ=29.45;MQRankSum=1.963;QD=1.98;ReadPosRankSum=-0.537;SOR=4.240	GT:AD:DP:GQ:PL	0/1:151,32:183:99:556,0,4437
1	12939794	rs148745623	G	T	1441.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=3.373;ClippingRankSum=-0.278;DB;DP=186;FS=0.000;MQ=26.23;MQRankSum=-1.111;QD=10.75;ReadPosRankSum=0.422;SOR=0.679	GT:AD:DP:GQ:PL	0/0:186,0:186:99:0,570,7953
1	12939815	rs139856989	G	A	1354.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.397;ClippingRankSum=1.231;DB;DP=183;FS=0.000;MQ=26.97;MQRankSum=-3.345;QD=10.34;ReadPosRankSum=0.234;SOR=0.595	GT:AD:DP:GQ:PL	0/0:183,0:183:99:0,553,7907
1	12939904	rs148317829	A	C	19.18	LowQual;SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.269;ClippingRankSum=0.436;DB;DP=106;FS=46.446;MQ=34.86;MQRankSum=-5.509;QD=0.24;ReadPosRankSum=1.074;SOR=1.711	GT:AD:DP:GQ:PL	0/0:106,0:106:99:0,318,4227
1	12940016	rs55642883	C	A	540.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.827;ClippingRankSum=-1.930;DB;DP=67;FS=0.000;MQ=26.38;MQRankSum=-2.529;QD=3.51;ReadPosRankSum=3.004;SOR=0.582	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,200,1942
1	12940023	rs201826377	G	A	259.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.601;ClippingRankSum=1.025;DB;DP=67;FS=7.022;MQ=27.33;MQRankSum=-0.363;QD=4.47;ReadPosRankSum=0.288;SOR=0.013	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,199,1952
1	12942047	rs199749044	C	T	36.13	SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias	AC=0;AF=0.00;AN=2;BaseQRankSum=2.143;ClippingRankSum=-1.379;DB;DP=208;FS=60.314;MQ=33.41;MQRankSum=-4.588;QD=0.20;ReadPosRankSum=3.348;SOR=8.155	GT:AD:DP:GQ:PL	0/0:191,17:208:99:0,131,6362
1	12942119	rs75355616	C	T	9052.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.444;ClippingRankSum=-1.348;DB;DP=228;FS=4.126;MQ=35.04;MQRankSum=-0.087;QD=17.85;ReadPosRankSum=0.728;SOR=0.853	GT:AD:DP:GQ:PL	0/0:228,0:228:99:0,683,8599
1	12942138	rs3877226	C	G	67.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=3.028;ClippingRankSum=0.591;DB;DP=223;FS=16.773;MQ=35.86;MQRankSum=-2.791;QD=0.50;ReadPosRankSum=-0.933;SOR=4.510	GT:AD:DP:GQ:PL	0/0:222,1:223:99:0,614,8333
1	12942179	rs200929518	T	C	638.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.311;ClippingRankSum=-0.581;DB;DP=167;FS=51.360;MQ=34.77;MQRankSum=-2.875;QD=1.66;ReadPosRankSum=-3.343;SOR=8.015	GT:AD:DP:GQ:PL	0/0:159,8:167:99:0,185,5591
1	12942275	rs4498811	G	A	89.13	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.130;ClippingRankSum=0.170;DB;DP=107;FS=43.977;MQ=34.11;MQRankSum=-1.651;QD=0.49;ReadPosRankSum=-3.479;SOR=1.678	GT:AD:DP:GQ:PL	0/0:107,0:107:99:0,327,4709
1	12942289	rs2994081	C	A	209.13	SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.833;ClippingRankSum=-0.234;DB;DP=107;FS=92.298;MQ=34.48;MQRankSum=0.822;QD=1.27;ReadPosRankSum=-2.145;SOR=3.010	GT:AD:DP:GQ:PL	0/0:105,2:107:99:0,254,4766
1	12942306	rs2994080	C	T	463.16	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.929;DB;DP=116;FS=24.154;MQ=34.44;MQRankSum=-1.673;QD=1.84;ReadPosRankSum=-6.262;SOR=0.081	GT:AD:DP:GQ:PL	0/0:110,6:116:99:0,133,4670
1	12942384	rs28580205	T	C	1406.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.546;ClippingRankSum=0.056;DB;DP=126;FS=0.000;MQ=43.73;MQRankSum=-5.595;QD=3.58;ReadPosRankSum=2.051;SOR=0.368	GT:AD:DP:GQ:PL	0/1:101,25:126:99:440,0,3720
1	12942399	rs61781965	A	G	1554.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.592;DB;DP=106;FS=0.000;MQ=45.74;MQRankSum=-4.846;QD=6.73;ReadPosRankSum=1.664;SOR=0.616	GT:AD:DP:GQ:PL	0/0:106,0:106:99:0,316,4193
1	12942414	rs28438506	G	T	2232.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.926;ClippingRankSum=0.577;DB;DP=80;FS=1.886;MQ=46.66;MQRankSum=-7.677;QD=8.69;ReadPosRankSum=-2.028;SOR=0.309	GT:AD:DP:GQ:PL	0/1:61,19:80:99:433,0,2243
1	12942419	rs2185333	G	T	213.43	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.660;ClippingRankSum=-0.792;DB;DP=72;FS=0.000;MQ=47.15;MQRankSum=-1.975;QD=3.14;ReadPosRankSum=-2.611;SOR=0.109	GT:AD:DP:GQ:PL	0/0:72,0:72:99:0,220,2729
1	12942430	rs78990759	G	C	434.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.390;ClippingRankSum=-1.065;DB;DP=48;FS=0.000;MQ=49.50;MQRankSum=-2.746;QD=3.53;ReadPosRankSum=-1.182;SOR=0.488	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,157,2308
1	12942806	rs146799059	T	G	157.33	SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;ClippingRankSum=-0.476;DB;DP=24;FS=86.699;MQ=41.88;MQRankSum=-2.279;QD=2.81;ReadPosRankSum=0.509;SOR=4.394	GT:AD:DP:GQ:PL	0/1:22,2:24:15:15,0,1420
1	12942813	rs140311405	G	A	196.33	SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=2.761;ClippingRankSum=1.311;DB;DP=25;FS=86.625;MQ=42.83;MQRankSum=-2.453;QD=3.33;ReadPosRankSum=0.212;SOR=4.605	GT:AD:DP:GQ:PL	0/1:23,2:25:15:15,0,1479
1	12942833	rs113496681	C	CG	88.16	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=2.480;ClippingRankSum=-1.532;DB;DP=23;FS=68.315;MQ=45.77;MQRankSum=-3.159;QD=1.47;ReadPosRankSum=0.063;SOR=4.159	GT:AD:DP:GQ:PL	0/1:21,2:23:21:21,0,1523
1	12942862	rs61778465	G	C	1849.19	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.498;ClippingRankSum=-0.780;DB;DP=31;FS=9.060;MQ=52.05;MQRankSum=-6.910;QD=29.35;ReadPosRankSum=0.696;SOR=0.136	GT:AD:DP:GQ:PL	0/0:29,2:31:2:0,2,1066
1	12942961	rs4625290	A	C	446.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.212;ClippingRankSum=-0.410;DB;DP=55;FS=4.293;MQ=52.92;MQRankSum=-2.174;QD=7.69;ReadPosRankSum=2.736;SOR=1.318	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,166,2365
1	12943038	rs3121081	A	C	187.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.478;DB;DP=69;FS=3.275;MQ=37.70;MQRankSum=-0.674;QD=4.35;ReadPosRankSum=-0.617;SOR=1.439	GT:AD:DP:GQ:PL	0/0:69,0:69:99:0,207,2731
1	12943156	rs3121080	T	C	144.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.690;ClippingRankSum=-0.043;DB;DP=58;FS=6.827;MQ=47.82;MQRankSum=-4.730;QD=3.35;ReadPosRankSum=0.096;SOR=2.262	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,175,2501
1	12943200	rs3121079	A	G	162.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.557;ClippingRankSum=-0.628;DB;DP=54;FS=1.881;MQ=54.24;MQRankSum=-4.552;QD=3.95;ReadPosRankSum=1.000;SOR=0.257	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,2313
1	12943431	.	G	C	131.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.486;ClippingRankSum=-0.778;DP=11;FS=2.530;MQ=36.18;MQRankSum=0.146;QD=10.93;ReadPosRankSum=1.507;SOR=1.678	GT:AD:DP:GQ:PL	0/0:11,0:11:33:0,33,461
1	12954967	.	G	T	708.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.040;DP=66;FS=0.813;MQ=32.47;MQRankSum=-0.435;QD=10.57;ReadPosRankSum=1.383;SOR=0.584	GT:AD:DP:GQ:PL	0/1:40,26:66:99:739,0,1121
1	12979729	rs146836223	G	A	832.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.525;ClippingRankSum=0.173;DB;DP=38;FS=2.648;MQ=29.13;MQRankSum=-1.845;QD=6.26;ReadPosRankSum=0.176;SOR=0.998	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1213
1	12979845	rs142026718	T	C	1041.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.264;ClippingRankSum=-0.447;DB;DP=76;FS=11.052;MQ=30.24;MQRankSum=-0.760;QD=5.63;ReadPosRankSum=-2.097;SOR=1.250	GT:AD:DP:GQ:PL	0/0:76,0:76:99:0,228,2480
1	12980232	rs201674075	G	A	77.76	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=1.299;DB;DP=16;FS=25.110;MQ=25.00;MQRankSum=-0.639;QD=3.11;ReadPosRankSum=2.000;SOR=0.450	GT:AD:DP:GQ:PL	0/1:11,5:16:99:101,0,279
1	12987833	.	A	G	3747.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0.286;DP=81;FS=1.658;MQ=26.91;MQRankSum=0.561;QD=14.58;ReadPosRankSum=-0.656;SOR=0.572	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1063,0,989
1	12987951	rs148022983	C	T	6304.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=-1.180;DB;DP=133;FS=1.251;MQ=28.73;MQRankSum=-1.668;QD=14.30;ReadPosRankSum=-0.351;SOR=0.581	GT:AD:DP:GQ:PL	0/1:69,64:133:99:1633,0,1818
1	12998766	.	G	A	31.41	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=-0.474;DP=8;FS=7.656;MQ=27.94;MQRankSum=-0.237;QD=3.93;ReadPosRankSum=0.118;SOR=0.852	GT:AD:DP:GQ:PL	0/1:5,3:8:62:62,0,140
1	13000880	.	C	T	85.19	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.436;ClippingRankSum=-0.611;DP=10;FS=0.000;MQ=31.94;MQRankSum=-2.706;QD=6.09;ReadPosRankSum=-1.833;SOR=0.033	GT:AD:DP:GQ:PL	0/0:10,0:10:30:0,30,501
1	13000881	.	A	G	85.19	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.053;ClippingRankSum=1.123;DP=10;FS=0.000;MQ=31.85;MQRankSum=-2.982;QD=6.09;ReadPosRankSum=-2.595;SOR=0.055	GT:AD:DP:GQ:PL	0/0:10,0:10:30:0,30,501
1	13000963	rs200242081	G	A	1674.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=-0.870;DB;DP=62;FS=0.000;MQ=28.90;MQRankSum=-1.747;QD=8.82;ReadPosRankSum=1.031;SOR=0.398	GT:AD:DP:GQ:PL	0/1:42,20:62:99:418,0,1176
1	13001082	.	T	A	421.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.260;ClippingRankSum=0.336;DP=126;FS=0.000;MQ=29.59;MQRankSum=0.108;QD=5.01;ReadPosRankSum=2.438;SOR=0.003	GT:AD:DP:GQ:PL	0/0:126,0:126:99:0,379,4161
1	13001186	rs200795385	C	T	6655.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;ClippingRankSum=1.081;DB;DP=125;FS=0.000;MQ=27.45;MQRankSum=-10.062;QD=16.39;ReadPosRankSum=0.025;SOR=1.557	GT:AD:DP:GQ:PL	0/1:47,78:125:99:1929,0,1208
1	13001312	rs76131424	C	G	16472.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;ClippingRankSum=-0.167;DB;DP=392;FS=14.807;MQ=36.19;MQRankSum=-3.985;QD=13.33;ReadPosRankSum=-0.416;SOR=1.516	GT:AD:DP:GQ:PL	0/1:174,218:392:99:6077,0,5143
1	13001418	rs150206676	C	A	379.92	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=-1.264;DB;DP=52;FS=15.756;MQ=28.54;MQRankSum=2.612;QD=1.84;ReadPosRankSum=-0.323;SOR=0.004	GT:AD:DP:GQ:PL	0/1:44,8:52:92:92,0,1779
1	13001428	rs61779368	C	A	6108.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=-0.959;DB;DP=52;FS=11.978;MQ=28.68;MQRankSum=-2.851;QD=29.80;ReadPosRankSum=2.190;SOR=4.420	GT:AD:DP:GQ:PL	0/1:11,41:52:99:1557,0,381
1	13001445	rs61779369	C	T	5597.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;ClippingRankSum=0.083;DB;DP=51;FS=14.190;MQ=28.92;MQRankSum=-4.326;QD=26.78;ReadPosRankSum=1.931;SOR=4.189	GT:AD:DP:GQ:PL	0/1:17,34:51:99:1415,0,680
1	13001463	rs201152744	G	C	445.16	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.347;DB;DP=50;FS=0.000;MQ=29.04;MQRankSum=0.236;QD=2.91;ReadPosRankSum=-1.344;SOR=0.352	GT:AD:DP:GQ:PL	0/1:40,10:50:99:198,0,1663
1	13001465	rs201785437	G	T	5304.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.737;DB;DP=49;FS=14.174;MQ=29.22;MQRankSum=-6.622;QD=28.68;ReadPosRankSum=-0.755;SOR=4.190	GT:AD:DP:GQ:PL	0/1:13,36:49:99:1654,0,445
1	13001489	rs61779370	C	G	2619.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=-0.405;DB;DP=73;FS=13.515;MQ=31.73;MQRankSum=6.966;QD=11.01;ReadPosRankSum=1.947;SOR=0.018	GT:AD:DP:GQ:PL	0/1:56,17:73:99:447,0,2183
1	13001492	rs200498051	G	C	1180.16	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=-0.852;DB;DP=70;FS=0.000;MQ=31.90;MQRankSum=2.002;QD=6.31;ReadPosRankSum=1.085;SOR=0.780	GT:AD:DP:GQ:PL	0/1:50,20:70:99:539,0,1930
1	13001517	.	C	T	2382.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=1.127;DP=73;FS=2.568;MQ=34.00;MQRankSum=-6.687;QD=10.54;ReadPosRankSum=3.412;SOR=1.514	GT:AD:DP:GQ:PL	0/1:48,25:73:99:884,0,1961
1	13001523	.	T	C	1089.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;ClippingRankSum=0.454;DP=72;FS=0.000;MQ=34.13;MQRankSum=-4.812;QD=4.93;ReadPosRankSum=1.585;SOR=1.022	GT:AD:DP:GQ:PL	0/1:52,20:72:99:495,0,2095
1	13001538	.	G	A	1667.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.274;ClippingRankSum=0.308;DP=70;FS=2.411;MQ=35.77;MQRankSum=-5.967;QD=8.47;ReadPosRankSum=1.954;SOR=1.430	GT:AD:DP:GQ:PL	0/1:48,22:70:99:784,0,2060
1	13001558	.	G	GT	493.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=-1.169;DP=49;FS=0.000;MQ=36.93;MQRankSum=-4.478;QD=2.77;ReadPosRankSum=-1.846;SOR=0.462	GT:AD:DP:GQ:PL	0/1:39,10:49:99:326,0,1605
1	13001564	.	C	T	1105.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=1.739;DP=58;FS=2.412;MQ=37.37;MQRankSum=-6.756;QD=6.74;ReadPosRankSum=-5.036;SOR=1.074	GT:AD:DP:GQ:PL	0/1:40,18:58:99:521,0,1618
1	13013397	.	G	A	17.22	LowQual;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.062;ClippingRankSum=-0.364;DP=22;FS=0.000;MQ=31.54;MQRankSum=-2.402;QD=5.74;ReadPosRankSum=1.965;SOR=0.063	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,783
1	13036141	.	A	G	275.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.271;DP=9;FS=3.869;MQ=23.94;MQRankSum=-0.100;QD=7.07;ReadPosRankSum=-1.213;SOR=0.105	GT:AD:DP:GQ:PL	0/1:3,6:9:58:125,0,58
1	13036247	rs201369259	T	A	5859.16	SNP_MappingQuality;SNP_StrandBias	AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.018;DB;DP=83;FS=77.051;MQ=26.08;MQRankSum=-4.517;QD=19.34;ReadPosRankSum=1.484;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2496,248,0
1	13036296	rs201492352	C	T	784.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.928;ClippingRankSum=-0.884;DB;DP=63;FS=11.274;MQ=26.28;MQRankSum=-1.285;QD=5.16;ReadPosRankSum=-2.073;SOR=2.895	GT:AD:DP:GQ:PL	0/1:38,25:63:99:567,0,966
1	13036330	rs200053605	G	A	2523.16	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.963;DB;DP=36;FS=47.372;MQ=24.87;MQRankSum=2.113;QD=19.26;ReadPosRankSum=0.512;SOR=4.956	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1049,108,0
1	13036447	rs199683676	C	G	6340.16	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;ClippingRankSum=-1.406;DB;DP=80;FS=0.997;MQ=24.25;MQRankSum=-4.835;QD=19.45;ReadPosRankSum=2.437;SOR=0.792	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2294,240,0
1	13036587	rs77788641	C	T	9491.16	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=1.250;ClippingRankSum=1.035;DB;DP=111;FS=5.273;MQ=26.68;MQRankSum=-3.914;QD=20.54;ReadPosRankSum=4.107;SOR=1.163	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3426,332,0
1	13036654	rs201636235	C	T	880.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.175;ClippingRankSum=0.166;DB;DP=70;FS=0.000;MQ=26.01;MQRankSum=-0.335;QD=4.58;ReadPosRankSum=1.865;SOR=0.704	GT:AD:DP:GQ:PL	0/1:43,27:70:99:594,0,1067
1	13038327	rs199598633	G	T	457.66	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.510;DB;DP=5;FS=0.000;MQ=38.31;MQRankSum=0.736;QD=26.92;ReadPosRankSum=0.396;SOR=2.179	GT:AD:DP:GQ:PL	0/1:1,4:5:17:157,0,17
1	13038795	rs140382718	A	G	126.22	SNP_MappingQuality	AC=0;AF=0.00;AN=0;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=6;FS=0.000;MQ=28.74;MQRankSum=0.736;QD=21.04;ReadPosRankSum=-0.736;SOR=2.303	GT	./.
1	13052539	rs201172464	G	A	1246.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.303;ClippingRankSum=0.715;DB;DP=10;FS=0.000;MQ=41.47;MQRankSum=-5.023;QD=20.77;ReadPosRankSum=1.526;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,10:10:30:421,30,0
1	13052589	rs71225489	A	T	1914.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.576;ClippingRankSum=-1.304;DB;DP=17;FS=7.520;MQ=43.11;MQRankSum=-7.925;QD=20.58;ReadPosRankSum=0.158;SOR=2.954	GT:AD:DP:GQ:PL	1/1:0,17:17:51:717,51,0
1	13052789	rs61780142	G	A	6854.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=-0.000;DB;DP=90;FS=0.897;MQ=46.45;MQRankSum=0.681;QD=18.28;ReadPosRankSum=-0.188;SOR=0.638	GT:AD:DP:GQ:PL	0/1:28,62:90:99:1962,0,806
1	13052871	rs79792138	C	T	4227.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=2.546;DB;DP=52;FS=0.500;MQ=42.47;MQRankSum=-1.984;QD=15.78;ReadPosRankSum=-3.638;SOR=0.735	GT:AD:DP:GQ:PL	0/1:22,30:52:99:901,0,565
1	13052907	rs72474524	T	C	8572.16	SNP_StrandBias	AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;ClippingRankSum=-0.582;DB;DP=70;FS=83.806;MQ=41.99;MQRankSum=-7.737;QD=27.21;ReadPosRankSum=0.185;SOR=5.578	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2860,214,0
1	13111528	.	A	G	311.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.892;ClippingRankSum=0.391;DP=30;FS=0.000;MQ=24.43;MQRankSum=-3.150;QD=6.48;ReadPosRankSum=-1.786;SOR=0.061	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,882
1	13111564	rs201802913	C	T	782.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.230;DB;DP=38;FS=2.601;MQ=24.91;MQRankSum=1.467;QD=13.49;ReadPosRankSum=1.368;SOR=1.609	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,113,1092
1	13111821	.	C	G	233.55	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=-0.084;DP=32;FS=5.019;MQ=24.89;MQRankSum=-2.761;QD=2.18;ReadPosRankSum=-1.275;SOR=0.051	GT:AD:DP:GQ:PL	0/1:24,8:32:99:139,0,614
1	13123728	.	G	A	492.17	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;ClippingRankSum=-1.219;DP=19;FS=13.725;MQ=27.50;MQRankSum=-2.465;QD=12.30;ReadPosRankSum=0.704;SOR=3.877	GT:AD:DP:GQ:PL	0/1:12,7:19:99:149,0,365
1	13123775	.	A	G	143.69	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.653;ClippingRankSum=-0.151;DP=7;FS=4.523;MQ=25.89;MQRankSum=0.352;QD=20.53;ReadPosRankSum=-0.251;SOR=0.061	GT:AD:DP:GQ:PL	0/0:7,0:7:21:0,21,204
1	13123802	.	C	T	220.65	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=1.294;DP=4;FS=0.000;MQ=25.87;MQRankSum=-0.555;QD=18.39;ReadPosRankSum=0.000;SOR=1.981	GT:AD:DP:GQ:PL	0/1:3,1:4:17:17,0,76
1	13141203	.	C	T	48.60	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.178;DP=13;FS=0.000;MQ=27.39;MQRankSum=-0.817;QD=3.47;ReadPosRankSum=-0.320;SOR=0.046	GT:AD:DP:GQ:PL	0/1:10,3:13:51:51,0,249
1	13141237	.	G	A	342.97	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=-0.542;DP=16;FS=0.000;MQ=25.00;MQRankSum=0.701;QD=8.37;ReadPosRankSum=0.675;SOR=0.418	GT:AD:DP:GQ:PL	0/1:6,10:16:99:249,0,130
1	13141354	rs199640823	C	G	2285.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=1.049;DB;DP=52;FS=0.000;MQ=25.00;MQRankSum=1.866;QD=16.68;ReadPosRankSum=1.053;SOR=1.476	GT:AD:DP:GQ:PL	0/1:20,32:52:99:796,0,419
1	13141494	.	C	T	529.90	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;ClippingRankSum=0.643;DP=59;FS=78.042;MQ=30.14;MQRankSum=-2.416;QD=7.26;ReadPosRankSum=-5.014;SOR=6.930	GT:AD:DP:GQ:PL	0/1:48,11:59:99:150,0,1423
1	13141561	rs200582121	C	T	338.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.114;DB;DP=72;FS=26.400;MQ=28.72;MQRankSum=-0.657;QD=3.28;ReadPosRankSum=0.643;SOR=2.251	GT:AD:DP:GQ:PL	0/1:60,12:72:99:166,0,1642
1	13141835	rs79437155	C	T	3384.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=2.379;DB;DP=44;FS=0.000;MQ=36.07;MQRankSum=-2.108;QD=26.23;ReadPosRankSum=2.130;SOR=1.223	GT:AD:DP:GQ:PL	0/1:15,29:44:99:927,0,441
1	13182899	rs28537666	A	G	758.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.221;DB;DP=39;FS=18.857;MQ=49.01;MQRankSum=-0.791;QD=6.32;ReadPosRankSum=2.244;SOR=0.005	GT:AD:DP:GQ:PL	0/1:32,7:39:99:161,0,1129
1	13182929	rs76623819	T	A	500.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.241;DB;DP=46;FS=10.745;MQ=41.55;MQRankSum=0.128;QD=3.94;ReadPosRankSum=-1.149;SOR=0.020	GT:AD:DP:GQ:PL	0/1:38,8:46:99:188,0,1324
1	13182942	rs79355085	T	A	326.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.356;ClippingRankSum=-0.196;DB;DP=50;FS=3.227;MQ=38.18;MQRankSum=-0.847;QD=2.51;ReadPosRankSum=-1.093;SOR=0.117	GT:AD:DP:GQ:PL	0/1:44,6:50:85:85,0,1489
1	13183109	.	T	C	1210.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;ClippingRankSum=-1.205;DP=122;FS=13.312;MQ=55.02;MQRankSum=-11.615;QD=3.02;ReadPosRankSum=-1.110;SOR=2.027	GT:AD:DP:GQ:PL	0/1:109,13:122:99:209,0,4648
1	13183110	.	C	A	1192.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.639;ClippingRankSum=-0.510;DP=122;FS=19.623;MQ=54.89;MQRankSum=-11.626;QD=2.98;ReadPosRankSum=-0.599;SOR=2.059	GT:AD:DP:GQ:PL	0/1:109,13:122:99:200,0,4774
1	13183115	rs111369527	G	A	1393.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.322;ClippingRankSum=0.022;DB;DP=122;FS=15.462;MQ=53.89;MQRankSum=-11.359;QD=3.41;ReadPosRankSum=1.659;SOR=2.331	GT:AD:DP:GQ:PL	0/1:108,14:122:99:248,0,4703
1	13183130	.	G	A	2719.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;ClippingRankSum=0.187;DP=135;FS=26.802;MQ=50.37;MQRankSum=-13.453;QD=5.75;ReadPosRankSum=1.901;SOR=3.118	GT:AD:DP:GQ:PL	0/1:117,18:135:99:417,0,5064
1	13183138	.	T	A	3028.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=-1.112;DP=140;FS=34.063;MQ=48.98;MQRankSum=-13.825;QD=6.26;ReadPosRankSum=2.279;SOR=3.443	GT:AD:DP:GQ:PL	0/1:120,20:140:99:441,0,4980
1	13183165	.	T	C	4230.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.387;ClippingRankSum=1.563;DP=144;FS=59.876;MQ=43.88;MQRankSum=-13.933;QD=7.89;ReadPosRankSum=0.963;SOR=4.218	GT:AD:DP:GQ:PL	0/1:119,25:144:99:725,0,4999
1	13183168	.	A	G	4418.92	SNP_MQRankSumLow;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.366;ClippingRankSum=0.182;DP=143;FS=62.974;MQ=43.32;MQRankSum=-13.792;QD=8.24;ReadPosRankSum=0.973;SOR=4.327	GT:AD:DP:GQ:PL	0/1:117,26:143:99:721,0,5069
1	13183176	rs115395118	C	T	4838.92	SNP_MQRankSumLow;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.226;ClippingRankSum=-0.964;DB;DP=144;FS=69.316;MQ=41.94;MQRankSum=-12.642;QD=8.94;ReadPosRankSum=-0.766;SOR=4.732	GT:AD:DP:GQ:PL	0/1:118,26:144:99:796,0,5206
1	13183180	rs138475976	T	C	4550.92	SNP_MQRankSumLow;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.246;ClippingRankSum=0.674;DB;DP=147;FS=76.398;MQ=41.45;MQRankSum=-12.530;QD=8.51;ReadPosRankSum=-0.503;SOR=4.893	GT:AD:DP:GQ:PL	0/1:120,27:147:99:838,0,5203
1	13183187	rs149345149	A	G	4736.92	SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=-0.649;DB;DP=152;FS=82.884;MQ=40.47;MQRankSum=-11.860;QD=8.61;ReadPosRankSum=-1.316;SOR=5.611	GT:AD:DP:GQ:PL	0/1:124,28:152:99:841,0,5161
1	13183188	rs144308453	T	A	4901.92	SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0.650;DB;DP=150;FS=82.884;MQ=40.42;MQRankSum=-12.027;QD=8.96;ReadPosRankSum=-1.154;SOR=5.571	GT:AD:DP:GQ:PL	0/1:124,26:150:99:874,0,5284
1	13183195	rs140894230	A	G	5191.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.115;DB;DP=146;FS=90.464;MQ=39.61;MQRankSum=-10.920;QD=9.32;ReadPosRankSum=-1.740;SOR=5.793	GT:AD:DP:GQ:PL	0/1:122,24:146:99:712,0,5212
1	13183199	rs146955784	C	G	5296.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=-1.725;DB;DP=148;FS=90.013;MQ=39.21;MQRankSum=-10.644;QD=9.33;ReadPosRankSum=-2.786;SOR=5.888	GT:AD:DP:GQ:PL	0/1:122,26:148:99:808,0,5038
1	13183213	rs28373323	T	A	6640.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;ClippingRankSum=0.376;DB;DP=154;FS=93.334;MQ=38.79;MQRankSum=-9.861;QD=11.01;ReadPosRankSum=-3.039;SOR=5.191	GT:AD:DP:GQ:PL	0/1:123,31:154:99:1069,0,5479
1	13183225	rs28634306	T	C	6952.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.607;ClippingRankSum=0.146;DB;DP=176;FS=96.388;MQ=38.63;MQRankSum=-8.754;QD=10.93;ReadPosRankSum=0.476;SOR=5.349	GT:AD:DP:GQ:PL	0/1:141,35:176:99:1120,0,5935
1	13183228	rs144054379	C	T	6964.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=7.759;ClippingRankSum=-0.669;DB;DP=179;FS=93.915;MQ=38.47;MQRankSum=-8.277;QD=10.90;ReadPosRankSum=1.299;SOR=5.374	GT:AD:DP:GQ:PL	0/1:143,36:179:99:1195,0,6055
1	13183237	rs141111983	C	T	7138.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.833;ClippingRankSum=0.301;DB;DP=183;FS=86.717;MQ=38.16;MQRankSum=-7.028;QD=11.07;ReadPosRankSum=2.282;SOR=4.898	GT:AD:DP:GQ:PL	0/1:142,41:183:99:1303,0,6298
1	13183238	rs150951326	T	C	7237.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.416;ClippingRankSum=0.164;DB;DP=184;FS=83.221;MQ=38.02;MQRankSum=-6.954;QD=11.14;ReadPosRankSum=2.623;SOR=4.858	GT:AD:DP:GQ:PL	0/1:143,41:184:99:1300,0,6340
1	13183243	rs138897759	T	C	7885.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.107;ClippingRankSum=0.953;DB;DP=188;FS=87.125;MQ=37.97;MQRankSum=-5.776;QD=11.86;ReadPosRankSum=3.308;SOR=4.862	GT:AD:DP:GQ:PL	0/1:145,43:188:99:1432,0,6247
1	13183248	rs141472183	T	A	8113.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.861;DB;DP=185;FS=89.993;MQ=38.01;MQRankSum=-4.516;QD=11.86;ReadPosRankSum=1.974;SOR=4.949	GT:AD:DP:GQ:PL	0/1:141,44:185:99:1447,0,6025
1	13183249	rs139566100	C	A	8080.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=1.950;DB;DP=186;FS=89.369;MQ=38.06;MQRankSum=-4.754;QD=11.80;ReadPosRankSum=1.985;SOR=4.941	GT:AD:DP:GQ:PL	0/1:142,44:186:99:1414,0,5902
1	13183439	rs28713604	T	C	44448.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.073;ClippingRankSum=-1.412;DB;DP=349;FS=0.000;MQ=53.74;MQRankSum=-7.124;QD=32.97;ReadPosRankSum=3.087;SOR=0.628	GT:AD:DP:GQ:PL	0/1:85,264:349:99:9503,0,2580
1	13183511	rs72864546	T	C	20153.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.572;ClippingRankSum=0.902;DB;DP=317;FS=21.896;MQ=45.99;MQRankSum=-8.341;QD=17.85;ReadPosRankSum=-0.328;SOR=1.487	GT:AD:DP:GQ:PL	0/1:187,130:317:99:4634,0,7372
1	13183528	rs76937665	A	C	17273.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.875;ClippingRankSum=-0.678;DB;DP=298;FS=56.896;MQ=42.18;MQRankSum=-12.868;QD=16.61;ReadPosRankSum=-0.086;SOR=2.794	GT:AD:DP:GQ:PL	0/1:194,104:298:99:4039,0,8216
1	13183530	rs200046163	A	G	938.16	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=1.157;DB;DP=299;FS=9.552;MQ=41.92;MQRankSum=-4.064;QD=1.26;ReadPosRankSum=-0.567;SOR=2.212	GT:AD:DP:GQ:PL	0/1:265,34:299:99:340,0,10740
1	13183532	rs77505369	C	T	16202.92	SNP_MQRankSumLow;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=-1.376;DB;DP=298;FS=60.951;MQ=41.65;MQRankSum=-13.078;QD=15.59;ReadPosRankSum=-0.483;SOR=2.947	GT:AD:DP:GQ:PL	0/1:198,100:298:99:3624,0,8297
1	13183533	rs77556803	C	T	16023.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=-0.888;DB;DP=296;FS=58.095;MQ=41.63;MQRankSum=-13.208;QD=15.45;ReadPosRankSum=-0.515;SOR=2.925	GT:AD:DP:GQ:PL	0/1:197,99:296:99:3630,0,8213
1	13183567	rs78160026	C	T	7153.92	SNP_MQRankSumLow;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;ClippingRankSum=-1.725;DB;DP=248;FS=100.663;MQ=48.11;MQRankSum=-18.134;QD=8.30;ReadPosRankSum=1.618;SOR=5.310	GT:AD:DP:GQ:PL	0/1:198,50:248:99:1433,0,8102
1	13183573	rs76669210	G	T	6358.92	SNP_MQRankSumLow;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=2.772;ClippingRankSum=-1.315;DB;DP=239;FS=124.301;MQ=49.48;MQRankSum=-18.675;QD=7.55;ReadPosRankSum=2.957;SOR=6.560	GT:AD:DP:GQ:PL	0/1:195,44:239:99:1304,0,8230
1	13183631	rs80009603	A	T	3710.92	SNP_MQRankSumLow;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.053;DB;DP=234;FS=109.345;MQ=51.83;MQRankSum=-18.348;QD=4.24;ReadPosRankSum=1.729;SOR=8.539	GT:AD:DP:GQ:PL	0/1:200,34:234:99:824,0,8325
1	13183634	rs2982225	G	A	4096.92	SNP_MQRankSumLow;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.333;ClippingRankSum=0.211;DB;DP=239;FS=113.897;MQ=51.57;MQRankSum=-18.985;QD=4.62;ReadPosRankSum=1.003;SOR=6.856	GT:AD:DP:GQ:PL	0/1:199,40:239:99:994,0,8353
1	13183780	rs116484938	A	C	1386.92	SNP_LowQualityDepth;SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0.424;DB;DP=253;FS=36.912;MQ=45.39;MQRankSum=-13.916;QD=1.62;ReadPosRankSum=-1.922;SOR=3.610	GT:AD:DP:GQ:PL	0/1:214,39:253:99:639,0,8042
1	13183966	rs80025711	G	T	915.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.178;DB;DP=124;FS=1.289;MQ=39.80;MQRankSum=-8.997;QD=2.26;ReadPosRankSum=1.060;SOR=0.682	GT:AD:DP:GQ:PL	0/1:105,19:124:99:234,0,4208
1	13183973	rs3929664	G	A	6407.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.668;ClippingRankSum=-0.121;DB;DP=124;FS=0.000;MQ=40.68;MQRankSum=-5.258;QD=15.86;ReadPosRankSum=1.282;SOR=0.593	GT:AD:DP:GQ:PL	0/1:80,44:124:99:1243,0,3011
1	13184174	.	G	GCTC	50.03	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;ClippingRankSum=-0.171;DP=20;FS=0.000;MQ=58.24;MQRankSum=-4.067;QD=0.93;ReadPosRankSum=-1.524;SOR=0.077	GT:AD:DP:GQ:PL	0/1:18,2:20:15:15,0,955
1	13184176	.	T	G	78.60	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;ClippingRankSum=0.723;DP=19;FS=0.000;MQ=57.50;MQRankSum=-4.623;QD=1.54;ReadPosRankSum=-1.877;SOR=0.139	GT:AD:DP:GQ:PL	0/1:17,2:19:30:30,0,750
1	13184179	.	A	C	224.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;ClippingRankSum=0.396;DP=17;FS=0.000;MQ=57.04;MQRankSum=-4.573;QD=3.36;ReadPosRankSum=-1.692;SOR=0.196	GT:AD:DP:GQ:PL	0/1:15,2:17:33:33,0,708
1	13184181	.	GCCA	G	284.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;ClippingRankSum=0.795;DP=15;FS=0.000;MQ=56.18;MQRankSum=-5.237;QD=4.13;ReadPosRankSum=-2.352;SOR=0.336	GT:AD:DP:GQ:PL	0/1:13,2:15:81:81,0,621
1	13184205	rs77416578	G	A	485.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.925;ClippingRankSum=-1.189;DB;DP=12;FS=0.000;MQ=53.51;MQRankSum=-5.592;QD=9.53;ReadPosRankSum=0.568;SOR=1.058	GT:AD:DP:GQ:PL	0/1:8,4:12:99:144,0,324
1	13184207	.	T	G	488.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.514;ClippingRankSum=-0.783;DP=11;FS=0.000;MQ=53.37;MQRankSum=-5.568;QD=9.78;ReadPosRankSum=1.016;SOR=1.096	GT:AD:DP:GQ:PL	0/1:7,4:11:99:144,0,324
1	13184211	.	G	C	500.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.523;ClippingRankSum=-1.711;DP=9;FS=2.591;MQ=52.76;MQRankSum=-5.460;QD=10.89;ReadPosRankSum=1.593;SOR=1.270	GT:AD:DP:GQ:PL	0/1:5,4:9:99:150,0,240
1	13184213	rs75143742	C	T	577.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=-0.961;DB;DP=9;FS=2.591;MQ=52.76;MQRankSum=-5.460;QD=12.56;ReadPosRankSum=2.039;SOR=1.270	GT:AD:DP:GQ:PL	0/1:5,4:9:99:182,0,195
1	13184230	rs66601730	A	C	709.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.483;DB;DP=11;FS=0.000;MQ=50.73;MQRankSum=-5.669;QD=15.78;ReadPosRankSum=1.780;SOR=1.402	GT:AD:DP:GQ:PL	0/1:5,6:11:99:222,0,184
1	13184273	.	GTT	G	632.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=-0.695;DP=8;FS=0.000;MQ=49.01;MQRankSum=-4.743;QD=19.18;ReadPosRankSum=-0.218;SOR=0.892	GT:AD:DP:GQ:PL	0/1:3,5:8:99:201,0,193
1	13184276	.	G	GC	632.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.863;DP=8;FS=0.000;MQ=48.49;MQRankSum=-4.539;QD=21.10;ReadPosRankSum=-0.863;SOR=1.071	GT:AD:DP:GQ:PL	0/1:3,5:8:99:201,0,193
1	13184277	.	T	TC	635.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=2.679;DP=8;FS=0.000;MQ=48.49;MQRankSum=-4.539;QD=21.20;ReadPosRankSum=-0.415;SOR=1.071	GT:AD:DP:GQ:PL	0/1:3,5:8:99:201,0,193
1	13184282	.	T	TGC	557.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.322;DP=8;FS=0.000;MQ=49.86;MQRankSum=-4.128;QD=22.32;ReadPosRankSum=-0.758;SOR=1.051	GT:AD:DP:GQ:PL	0/1:3,5:8:99:201,0,193
1	13184284	.	GAA	G	518.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=-0.669;DP=7;FS=0.000;MQ=51.64;MQRankSum=-3.908;QD=23.59;ReadPosRankSum=-0.387;SOR=0.784	GT:AD:DP:GQ:PL	0/1:3,4:7:99:201,0,193
1	13184291	rs76654751	C	T	401.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=-1.096;DB;DP=7;FS=0.000;MQ=52.52;MQRankSum=-3.817;QD=19.14;ReadPosRankSum=-0.340;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,4:7:99:159,0,196
1	13184308	rs72474536	G	A	281.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.209;DB;DP=8;FS=3.310;MQ=50.99;MQRankSum=-3.022;QD=17.62;ReadPosRankSum=-1.276;SOR=2.030	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,238
1	13216975	.	T	C	126.60	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.729;DP=3;FS=0.000;MQ=35.34;MQRankSum=0.361;QD=14.07;ReadPosRankSum=-0.876;SOR=0.527	GT:AD:DP:GQ:PL	0/1:1,2:3:80:81,0,80
1	13216976	.	G	A	126.60	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DP=3;FS=0.000;MQ=35.34;MQRankSum=-0.876;QD=14.07;ReadPosRankSum=-0.361;SOR=0.527	GT:AD:DP:GQ:PL	0/1:1,2:3:80:81,0,80
1	13218904	rs2486712	T	A	5917.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=-0.029;DB;DP=163;FS=2.563;MQ=38.03;MQRankSum=0.208;QD=9.36;ReadPosRankSum=2.305;SOR=1.980	GT:AD:DP:GQ:PL	0/1:114,49:163:99:1443,0,4232
1	13219066	rs4026306	T	C	143.16	SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.050;DB;DP=242;FS=78.125;MQ=29.05;MQRankSum=6.105;QD=0.26;ReadPosRankSum=-5.894;SOR=4.631	GT:AD:DP:GQ:PL	0/1:222,20:242:50:50,0,6331
1	13219149	rs61780824	G	A	6788.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=6.243;ClippingRankSum=0.750;DB;DP=325;FS=51.908;MQ=33.74;MQRankSum=4.386;QD=4.91;ReadPosRankSum=-1.961;SOR=4.035	GT:AD:DP:GQ:PL	0/1:246,79:325:99:2019,0,7745
1	13219268	.	T	A	916.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=3.932;ClippingRankSum=-0.492;DP=305;FS=15.366;MQ=27.81;MQRankSum=3.285;QD=2.43;ReadPosRankSum=2.381;SOR=7.251	GT:AD:DP:GQ:PL	0/0:305,0:305:99:0,914,9600
1	13219736	.	ATT	A	144.88	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.710;DP=13;FS=0.000;MQ=59.74;MQRankSum=0.581;QD=0.64;ReadPosRankSum=2.001;SOR=1.402	GT:AD:DP:GQ:PL	0/1:8,5:13:52:52,0,118
1	13353748	.	T	C	19.48	LowQual;SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=-0.941;DP=7;FS=0.000;MQ=24.92;MQRankSum=0.564;QD=0.89;ReadPosRankSum=-1.443;SOR=0.064	GT:AD:DP:GQ:PL	0/1:5,2:7:38:38,0,126
1	13353767	rs202084856	G	A	632.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.147;DB;DP=11;FS=0.000;MQ=25.26;MQRankSum=1.143;QD=12.66;ReadPosRankSum=-0.772;SOR=0.963	GT:AD:DP:GQ:PL	0/1:7,4:11:86:86,0,186
1	13353779	.	T	C	347.16	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.373;DP=9;FS=6.102;MQ=25.63;MQRankSum=-1.610;QD=11.20;ReadPosRankSum=0.011;SOR=0.088	GT:AD:DP:GQ:PL	0/1:4,5:9:92:134,0,92
1	13353786	rs199553194	G	A	612.16	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.558;DB;DP=11;FS=13.143;MQ=26.57;MQRankSum=0.820;QD=12.49;ReadPosRankSum=-2.658;SOR=0.039	GT:AD:DP:GQ:PL	0/0:11,0:11:36:0,36,534
1	13353787	rs200531848	G	A	612.16	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.988;ClippingRankSum=-1.463;DB;DP=12;FS=7.446;MQ=26.53;MQRankSum=0.688;QD=12.49;ReadPosRankSum=-2.997;SOR=0.082	GT:AD:DP:GQ:PL	0/0:12,0:12:36:0,36,534
1	13353794	.	T	C	33.47	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.305;ClippingRankSum=0.473;DP=13;FS=6.692;MQ=27.19;MQRankSum=-1.456;QD=1.20;ReadPosRankSum=1.456;SOR=0.073	GT:AD:DP:GQ:PL	0/0:12,1:13:10:0,10,450
1	13353799	.	T	A	856.16	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;ClippingRankSum=-0.426;DP=13;FS=7.850;MQ=27.23;MQRankSum=0.901;QD=18.22;ReadPosRankSum=0.437;SOR=2.303	GT:AD:DP:GQ:PL	0/1:5,8:13:99:321,0,186
1	13353802	.	C	G	856.16	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=-0.330;DP=13;FS=10.155;MQ=27.40;MQRankSum=0.110;QD=17.47;ReadPosRankSum=0.529;SOR=2.409	GT:AD:DP:GQ:PL	0/1:5,8:13:99:321,0,186
1	13353841	rs201496009	C	T	1443.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.038;ClippingRankSum=-0.525;DB;DP=24;FS=0.000;MQ=29.77;MQRankSum=-1.325;QD=13.37;ReadPosRankSum=0.242;SOR=0.636	GT:AD:DP:GQ:PL	1/1:1,23:24:43:724,43,0
1	13365747	rs201169636	C	G	559.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;ClippingRankSum=-0.611;DB;DP=50;FS=0.000;MQ=24.56;MQRankSum=0.694;QD=3.25;ReadPosRankSum=-2.228;SOR=0.810	GT:AD:DP:GQ:PL	0/1:35,15:50:99:262,0,884
1	13365776	rs202229355	C	G	957.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.910;ClippingRankSum=1.101;DB;DP=78;FS=6.735;MQ=24.48;MQRankSum=1.112;QD=3.97;ReadPosRankSum=1.482;SOR=1.967	GT:AD:DP:GQ:PL	0/1:55,23:78:99:404,0,1375
1	13365821	rs71224607	T	G	51.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.672;ClippingRankSum=-0.271;DB;DP=54;FS=4.519;MQ=24.73;MQRankSum=-2.951;QD=1.38;ReadPosRankSum=-1.051;SOR=1.552	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,1557
1	13365987	rs199741513	A	G	727.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.375;DB;DP=45;FS=2.398;MQ=25.10;MQRankSum=-2.483;QD=5.86;ReadPosRankSum=0.062;SOR=1.200	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,134,1302
1	13366053	rs200188871	G	A	694.08	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.604;DB;DP=48;FS=11.979;MQ=23.54;MQRankSum=-7.194;QD=7.38;ReadPosRankSum=2.998;SOR=2.994	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,1356
1	13368098	.	T	A	62.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=-0.553;DP=12;FS=0.000;MQ=23.64;MQRankSum=0.105;QD=1.73;ReadPosRankSum=0.672;SOR=0.148	GT:AD:DP:GQ:PL	0/1:9,3:12:48:48,0,220
1	13368333	.	T	C	154.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.307;DP=18;FS=0.000;MQ=26.26;MQRankSum=-1.042;QD=6.42;ReadPosRankSum=-0.307;SOR=0.083	GT:AD:DP:GQ:PL	0/0:18,0:18:53:0,53,521
1	13368365	.	C	T	226.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.554;DP=12;FS=0.000;MQ=25.91;MQRankSum=-0.908;QD=7.82;ReadPosRankSum=1.395;SOR=1.206	GT:AD:DP:GQ:PL	0/1:8,4:12:77:77,0,238
1	13368549	rs201258581	C	T	161.19	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.388;ClippingRankSum=-0.226;DB;DP=8;FS=0.000;MQ=25.05;MQRankSum=-0.226;QD=10.75;ReadPosRankSum=0.226;SOR=0.892	GT:AD:DP:GQ:PL	0/0:8,0:8:24:0,24,218
1	13368628	rs199603036	G	T	287.17	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.650;ClippingRankSum=1.482;DB;DP=10;FS=0.000;MQ=25.04;MQRankSum=0.267;QD=7.36;ReadPosRankSum=0.394;SOR=0.223	GT:AD:DP:GQ:PL	0/0:10,0:10:30:0,30,299
1	13368890	rs200830401	G	T	460.92	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.395;ClippingRankSum=1.693;DB;DP=10;FS=0.000;MQ=25.00;MQRankSum=-0.047;QD=20.04;ReadPosRankSum=-0.838;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,10:10:30:298,30,0
1	13379157	.	G	C	114.17	SNP_MappingQuality	AC=0;AF=0.00;AN=0;DP=4;FS=0.000;MQ=27.00;QD=28.54;SOR=3.258	GT	./.
1	13379179	.	C	T	83.42	SNP_MappingQuality	AC=0;AF=0.00;AN=0;DP=3;FS=0.000;MQ=27.00;QD=27.81;SOR=1.179	GT	./.
1	13379394	.	T	C	134.05	SNP_MappingQuality	AC=0;AF=0.00;AN=0;DP=5;FS=0.000;MQ=27.00;QD=26.81;SOR=1.981	GT	./.
1	13413890	.	C	T	80.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;ClippingRankSum=-0.025;DP=32;FS=0.000;MQ=24.16;MQRankSum=1.756;QD=2.50;ReadPosRankSum=1.857;SOR=0.385	GT:AD:DP:GQ:PL	0/1:25,7:32:99:111,0,603
1	13413903	.	C	G	21.22	LowQual;SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.219;DP=30;FS=0.000;MQ=24.37;MQRankSum=-0.496;QD=0.43;ReadPosRankSum=1.552;SOR=0.501	GT:AD:DP:GQ:PL	0/0:29,1:30:60:0,60,812
1	13413926	rs202170459	A	G	1002.15	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=-0.153;DB;DP=26;FS=0.000;MQ=24.58;MQRankSum=-0.563;QD=13.01;ReadPosRankSum=1.720;SOR=0.786	GT:AD:DP:GQ:PL	0/1:17,9:26:99:179,0,387
1	13413961	rs200141404	G	C	1157.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.678;DB;DP=20;FS=0.000;MQ=24.97;MQRankSum=-0.839;QD=14.84;ReadPosRankSum=1.052;SOR=0.483	GT:AD:DP:GQ:PL	0/1:14,6:20:99:119,0,336
1	13414059	rs141192612	C	T	5457.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=-2.130;DB;DP=90;FS=43.782;MQ=25.81;MQRankSum=2.414;QD=20.29;ReadPosRankSum=-2.358;SOR=1.926	GT:AD:DP:GQ:PL	0/1:49,41:90:99:975,0,1139
1	13447844	.	T	C	58.05	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.406;DP=2;FS=0.000;MQ=27.00;MQRankSum=0.406;QD=14.51;ReadPosRankSum=0.406;SOR=0.132	GT:AD:DP:GQ:PL	0/1:1,1:2:26:26,0,26
1	13447968	.	T	C	408.11	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DP=6;FS=0.000;MQ=26.24;QD=29.15;SOR=5.421	GT:AD:DP:GQ:PL	1/1:0,6:6:18:185,18,0
1	13447998	rs145165227	C	A	312.27	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MQ=26.12;QD=26.02;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,4:4:12:121,12,0
1	13448034	rs201058086	G	A	752.02	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MQ=24.83;QD=30.48;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
1	13448037	rs199521323	A	G	752.02	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MQ=24.90;QD=27.86;SOR=5.670	GT:AD:DP:GQ:PL	1/1:0,5:5:21:283,21,0
1	13448042	.	C	T	678.14	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DP=5;FS=0.000;MQ=24.90;QD=26.45;SOR=5.670	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
1	13448084	rs138924513	G	A	1284.44	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.301;ClippingRankSum=-0.753;DB;DP=12;FS=0.000;MQ=25.14;MQRankSum=-1.732;QD=27.92;ReadPosRankSum=0.301;SOR=6.273	GT:AD:DP:GQ:PL	1/1:1,11:12:4:300,4,0
1	13448116	rs148992058	A	G	886.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=2.089;DB;DP=13;FS=0.000;MQ=25.36;MQRankSum=-3.465;QD=19.26;ReadPosRankSum=1.939;SOR=2.110	GT:AD:DP:GQ:PL	0/1:6,7:13:99:173,0,145
1	13448180	rs199555791	A	G	377.06	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.474;DB;DP=5;FS=9.542;MQ=25.66;MQRankSum=-0.791;QD=34.28;ReadPosRankSum=-1.423;SOR=4.798	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
1	13448184	.	C	T	348.74	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.751;DP=4;FS=9.031;MQ=25.80;MQRankSum=-0.751;QD=30.44;ReadPosRankSum=-0.751;SOR=4.398	GT:AD:DP:GQ:PL	1/1:0,4:4:15:210,15,0
1	13448185	.	G	C	348.74	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;ClippingRankSum=-0.751;DP=4;FS=9.031;MQ=25.80;MQRankSum=-0.751;QD=30.44;ReadPosRankSum=-0.751;SOR=4.398	GT:AD:DP:GQ:PL	1/1:0,4:4:15:210,15,0
1	13448199	rs143762964	C	T	95.41	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;ClippingRankSum=-0.731;DB;DP=1;FS=4.771;MQ=28.49;MQRankSum=-0.731;QD=19.08;ReadPosRankSum=-0.731;SOR=3.229	GT:AD:DP:GQ:PL	1/1:0,1:1:3:29,3,0
1	13448283	rs80327699	A	G	11274.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=142;FS=0.000;MQ=26.53;QD=30.81;SOR=2.636	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4434,427,0
1	13448351	rs71183793	T	C	4516.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.000;MQ=26.72;QD=30.52;SOR=1.324	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1770,173,0
1	13448547	rs200801174	T	C	4917.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.000;MQ=26.81;QD=29.51;SOR=9.401	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1665,111,0
1	13448548	rs201453721	G	A	4949.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.000;MQ=26.80;QD=35.48;SOR=9.419	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1665,111,0
1	13448551	rs199771678	T	C	4904.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.000;MQ=26.79;QD=31.78;SOR=9.364	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1665,111,0
1	13645907	.	G	A	69.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.481;ClippingRankSum=-0.479;DP=24;FS=0.000;MQ=26.11;MQRankSum=-3.099;QD=2.88;ReadPosRankSum=0.905;SOR=0.012	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,740
1	13695461	.	T	C	241.07	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MQ=24.53;QD=27.64;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
1	13695472	.	T	C	298.66	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DP=3;FS=0.000;MQ=24.40;QD=33.66;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
1	13695542	.	G	A	91.88	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DP=1;FS=0.000;MQ=24.00;QD=22.97;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,1:1:3:29,3,0
1	13695685	rs201167498	G	A	4236.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=26.63;QD=31.15;SOR=9.840	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1314,126,0
1	13695787	rs202245256	C	G	1984.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.000;MQ=26.39;QD=29.19;SOR=3.849	GT:AD:DP:GQ:PL	1/1:0,14:14:42:392,42,0
1	13695816	rs148990958	G	A	4671.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=26.34;QD=29.76;SOR=1.579	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1365,138,0
1	13695974	rs142734546	T	C	1038.91	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MQ=24.04;QD=28.08;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,8:8:24:234,24,0
1	13696022	rs201136502	A	G	3261.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=24.10;QD=29.82;SOR=8.581	GT:AD:DP:GQ:PL	1/1:0,22:22:66:972,66,0
1	13696029	rs200753201	A	G	3353.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=24.22;QD=31.74;SOR=8.739	GT:AD:DP:GQ:PL	1/1:0,22:22:66:972,66,0
1	13696047	rs199733857	A	T	3951.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.000;MQ=24.28;QD=25.76;SOR=9.044	GT:AD:DP:GQ:PL	1/1:0,26:26:84:1184,84,0
1	13696054	rs200378484	G	A	4040.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.000;MQ=24.33;QD=30.26;SOR=9.150	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1358,102,0
1	13696090	rs201393220	T	C	3374.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.000;MQ=24.72;QD=28.60;SOR=9.541	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1270,132,0
1	13696187	rs199573287	C	T	450.17	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=1.075;DB;DP=15;FS=0.000;MQ=26.88;MQRankSum=0.632;QD=9.79;ReadPosRankSum=-0.742;SOR=0.473	GT:AD:DP:GQ:PL	0/1:10,5:15:99:113,0,273
1	13717050	.	C	A	470.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.940;ClippingRankSum=-0.369;DP=16;FS=0.000;MQ=26.64;MQRankSum=1.341;QD=11.75;ReadPosRankSum=0.353;SOR=0.233	GT:AD:DP:GQ:PL	0/1:10,6:16:99:142,0,270
1	13719052	rs141370897	T	G	581.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=-0.455;DB;DP=10;FS=0.000;MQ=43.45;MQRankSum=-1.640;QD=18.75;ReadPosRankSum=1.957;SOR=0.223	GT:AD:DP:GQ:PL	0/1:6,4:10:99:143,0,232
1	13744712	rs199886862	G	C	214.42	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.747;DB;DP=2;FS=0.000;MQ=34.91;MQRankSum=-0.747;QD=26.80;ReadPosRankSum=0.747;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
1	13802224	rs3795750	G	A	386.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.802;ClippingRankSum=-1.591;DB;DP=32;FS=3.771;MQ=60.00;MQRankSum=0.837;QD=9.65;ReadPosRankSum=0.542;SOR=0.214	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1381
1	13802325	rs3013105	T	C	1092.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.224;ClippingRankSum=-1.235;DB;DP=72;FS=4.166;MQ=60.00;MQRankSum=-0.521;QD=18.51;ReadPosRankSum=0.589;SOR=1.138	GT:AD:DP:GQ:PL	0/0:72,0:72:99:0,217,3145
1	13802722	.	GA	G	154.90	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=-0.932;DP=34;FS=0.000;MQ=60.15;MQRankSum=-1.167;QD=1.08;ReadPosRankSum=-0.810;SOR=0.505	GT:AD:DP:GQ:PL	0/1:25,9:34:99:132,0,502
1	13802818	rs2924855	T	G	337.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.286;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=0.009;QD=21.07;ReadPosRankSum=-0.182;SOR=0.289	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1152
1	13839382	rs2990682	C	G	2205.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.038;DB;DP=52;FS=0.000;MQ=60.00;MQRankSum=0.404;QD=19.01;ReadPosRankSum=0.784;SOR=0.545	GT:AD:DP:GQ:PL	0/1:25,27:52:99:1008,0,896
1	13936822	rs404658	G	T	1274.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.028;ClippingRankSum=1.299;DB;DP=54;FS=0.000;MQ=60.00;MQRankSum=0.643;QD=16.13;ReadPosRankSum=-0.437;SOR=0.677	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,2285
1	13937089	rs2487643	G	T	1278.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.486;DB;DP=61;FS=3.220;MQ=60.00;MQRankSum=-0.017;QD=16.39;ReadPosRankSum=0.899;SOR=0.358	GT:AD:DP:GQ:PL	0/0:61,0:61:99:0,183,2584
1	13937281	rs4391657	T	C	1504.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.254;ClippingRankSum=-0.514;DB;DP=21;FS=2.327;MQ=60.00;MQRankSum=0.491;QD=30.10;ReadPosRankSum=0.445;SOR=1.518	GT:AD:DP:GQ:PL	0/0:21,0:21:63:0,63,885
1	13940365	rs79691930	CTT	C	184.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.382;DB;DP=6;FS=0.000;MQ=60.00;MQRankSum=-0.715;QD=2.50;ReadPosRankSum=0.978;SOR=1.802	GT:AD:DP:GQ:PL	0/1:4,2:6:44:44,0,66
1	13940864	rs2486188	C	G	10139.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.000;MQ=60.00;QD=31.56;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2873,201,0
1	13944568	rs876931	T	C	54.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.026;ClippingRankSum=1.026;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.000;QD=18.04;ReadPosRankSum=-1.026;SOR=0.105	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,45
1	14042309	rs7411176	G	A	865.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=-0.359;DB;DP=29;FS=4.177;MQ=60.00;MQRankSum=0.797;QD=10.06;ReadPosRankSum=3.273;SOR=0.071	GT:AD:DP:GQ:PL	0/1:21,8:29:99:268,0,839
1	14057258	rs2277	G	A	1752.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.005;DB;DP=49;FS=2.629;MQ=60.00;MQRankSum=0.767;QD=17.01;ReadPosRankSum=1.160;SOR=0.209	GT:AD:DP:GQ:PL	0/1:26,23:49:99:768,0,845
1	14059395	rs33969518	T	C	2302.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=-1.321;DB;DP=57;FS=0.000;MQ=60.00;MQRankSum=-1.408;QD=17.31;ReadPosRankSum=-1.801;SOR=0.646	GT:AD:DP:GQ:PL	0/1:31,26:57:99:922,0,1186
1	14096821	rs1210110	T	C	2331.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=-3.417;DB;DP=56;FS=8.358;MQ=60.00;MQRankSum=-0.586;QD=19.43;ReadPosRankSum=0.993;SOR=1.382	GT:AD:DP:GQ:PL	0/1:24,32:56:99:1197,0,870
1	14099763	rs10803426	C	T	2348.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.871;DB;DP=46;FS=4.506;MQ=60.00;MQRankSum=-1.457;QD=18.64;ReadPosRankSum=0.217;SOR=0.257	GT:AD:DP:GQ:PL	0/1:23,23:46:99:849,0,875
1	14105139	rs2076324	T	A	4020.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.205;ClippingRankSum=-0.822;DB;DP=127;FS=6.008;MQ=58.93;MQRankSum=2.812;QD=11.42;ReadPosRankSum=4.616;SOR=1.207	GT:AD:DP:GQ:PL	0/1:74,53:127:99:1875,0,2643
1	14105298	rs1203678	G	A	5021.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.456;ClippingRankSum=-0.570;DB;DP=131;FS=0.000;MQ=60.00;MQRankSum=-1.066;QD=15.31;ReadPosRankSum=0.018;SOR=0.652	GT:AD:DP:GQ:PL	0/1:71,60:131:99:2180,0,2587
1	14106394	rs59028030	A	ACTC	4698.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;ClippingRankSum=1.371;DB;DP=91;FS=1.966;MQ=60.15;MQRankSum=-1.042;QD=19.58;ReadPosRankSum=-0.555;SOR=0.819	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1769,0,2158
1	14109114	rs1203651	A	G	4580.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;ClippingRankSum=1.445;DB;DP=112;FS=0.833;MQ=60.00;MQRankSum=-0.631;QD=19.41;ReadPosRankSum=0.669;SOR=0.765	GT:AD:DP:GQ:PL	0/1:57,55:112:99:2056,0,2042
1	14109408	.	CT	C	156.88	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.410;DP=21;FS=8.802;MQ=60.35;MQRankSum=2.653;QD=1.27;ReadPosRankSum=0.360;SOR=0.344	GT:AD:DP:GQ:PL	0/1:15,6:21:56:56,0,288
1	14143003	rs1046331	A	G	9102.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.103;DB;DP=87;FS=1.231;MQ=60.00;MQRankSum=0.005;QD=33.71;ReadPosRankSum=-0.636;SOR=0.600	GT:AD:DP:GQ:PL	0/1:48,39:87:99:1418,0,1832
1	14149505	rs2697970	C	A	4360.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.004;DB;DP=28;FS=3.971;MQ=60.00;MQRankSum=-0.653;QD=31.40;ReadPosRankSum=-0.012;SOR=2.658	GT:AD:DP:GQ:PL	0/1:14,14:28:99:513,0,520
1	14149601	rs2697969	C	T	6005.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=-0.016;DB;DP=50;FS=4.498;MQ=60.00;MQRankSum=-0.101;QD=33.93;ReadPosRankSum=0.408;SOR=0.341	GT:AD:DP:GQ:PL	0/1:31,19:50:99:639,0,1128
1	14149622	rs2697968	T	C	6550.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.151;DB;DP=54;FS=6.520;MQ=60.00;MQRankSum=-1.177;QD=34.29;ReadPosRankSum=0.631;SOR=0.315	GT:AD:DP:GQ:PL	0/1:30,24:54:99:837,0,1109
1	14151718	rs72637672	T	C	144.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=26.71;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	14507057	rs10928050	A	G	3799.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.642;ClippingRankSum=1.546;DB;DP=58;FS=8.183;MQ=60.00;MQRankSum=0.052;QD=28.36;ReadPosRankSum=0.631;SOR=0.987	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,174,2458
1	15382667	rs2076570	T	C	1683.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.323;ClippingRankSum=-0.331;DB;DP=95;FS=1.319;MQ=60.00;MQRankSum=1.500;QD=18.91;ReadPosRankSum=2.795;SOR=0.561	GT:AD:DP:GQ:PL	0/0:95,0:95:99:0,284,3985
1	15386606	rs41269407	A	C	1515.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.587;ClippingRankSum=-0.454;DB;DP=66;FS=3.781;MQ=60.00;MQRankSum=-0.794;QD=18.04;ReadPosRankSum=1.366;SOR=1.125	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,197,2702
1	15386628	rs2073091	T	C	5613.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.056;ClippingRankSum=-0.060;DB;DP=81;FS=14.897;MQ=60.00;MQRankSum=0.295;QD=26.61;ReadPosRankSum=0.656;SOR=1.430	GT:AD:DP:GQ:PL	0/0:81,0:81:99:0,242,3337
1	15390145	rs2076565	A	G	3779.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0.272;DB;DP=57;FS=7.538;MQ=60.00;MQRankSum=-0.326;QD=25.89;ReadPosRankSum=2.532;SOR=1.213	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,186,5043
1	15390178	rs2076564	C	T	3180.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.558;ClippingRankSum=-0.789;DB;DP=51;FS=0.765;MQ=60.00;MQRankSum=-0.538;QD=28.92;ReadPosRankSum=-1.192;SOR=0.585	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,159,4934
1	15390211	rs2076563	G	A	2433.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.287;DB;DP=47;FS=1.127;MQ=60.00;MQRankSum=1.096;QD=25.89;ReadPosRankSum=-0.098;SOR=0.482	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,140,3703
1	15392094	rs12071695	C	G	1807.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.589;ClippingRankSum=-1.091;DB;DP=70;FS=0.000;MQ=60.00;MQRankSum=-1.057;QD=22.31;ReadPosRankSum=-0.104;SOR=0.668	GT:AD:DP:GQ:PL	0/0:70,0:70:99:0,211,2997
1	15427783	rs72640711	G	T	894.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.153;ClippingRankSum=-1.552;DB;DP=17;FS=1.629;MQ=60.00;MQRankSum=-0.169;QD=22.35;ReadPosRankSum=1.407;SOR=0.296	GT:AD:DP:GQ:PL	0/0:17,0:17:51:0,51,755
1	15427801	rs12040354	C	T	434.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.467;DB;DP=20;FS=0.000;MQ=60.00;MQRankSum=-1.066;QD=21.71;ReadPosRankSum=1.083;SOR=0.751	GT:AD:DP:GQ:PL	0/1:7,13:20:99:465,0,251
1	15427934	rs10927676	C	T	1035.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=1.435;DB;DP=59;FS=9.810;MQ=60.00;MQRankSum=-0.837;QD=17.54;ReadPosRankSum=0.393;SOR=0.174	GT:AD:DP:GQ:PL	0/1:29,30:59:99:1066,0,1030
1	15427982	rs502918	G	A	3835.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=-0.269;DB;DP=79;FS=5.349;MQ=60.00;MQRankSum=-0.284;QD=17.68;ReadPosRankSum=1.415;SOR=0.422	GT:AD:DP:GQ:PL	0/1:38,41:79:99:1494,0,1324
1	15428358	rs477953	T	C	4497.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=-0.430;DB;DP=56;FS=9.604;MQ=60.00;MQRankSum=-2.634;QD=24.85;ReadPosRankSum=0.749;SOR=1.655	GT:AD:DP:GQ:PL	0/1:29,27:56:99:928,0,1055
1	15428508	rs476859	C	T	158.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=-2.408;DB;DP=14;FS=0.000;MQ=60.00;MQRankSum=-1.225;QD=11.30;ReadPosRankSum=-0.427;SOR=0.473	GT:AD:DP:GQ:PL	0/1:8,6:14:99:189,0,269
1	15430031	rs45547637	A	T	2503.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.036;DB;DP=58;FS=10.313;MQ=60.00;MQRankSum=1.520;QD=17.26;ReadPosRankSum=2.127;SOR=1.477	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,173,2346
1	15438825	.	ATGTGTGTGTGTGTG	A,ATGTGTGTG	2458.86	PASS	AC=0,2;AF=0.00,1.00;AN=2;BaseQRankSum=1.299;ClippingRankSum=-0.557;DP=22;FS=0.000;MQ=58.79;MQRankSum=0.186;QD=24.84;SOR=5.247	GT:AD:DP:GQ:PL	2/2:0,0,22:22:67:958,970,1109,67,77,0
1	15438990	rs10803354	G	A	1347.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=1.290;DB;DP=65;FS=3.556;MQ=60.00;MQRankSum=0.372;QD=20.73;ReadPosRankSum=1.823;SOR=1.055	GT:AD:DP:GQ:PL	0/1:28,37:65:99:1378,0,1001
1	15439083	rs140963536	A	AAGGTCTTTTTTTTCTTCTCCCAGCGGC	4064.86	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.643;ClippingRankSum=-0.275;DB;DP=46;FS=1.543;MQ=60.11;MQRankSum=-0.213;QD=28.43;ReadPosRankSum=-6.692;SOR=0.503	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,142,8901
1	15440831	rs74757967	T	C	742.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.528;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=2.729;QD=21.83;ReadPosRankSum=0.537;SOR=0.534	GT:AD:DP:GQ:PL	0/1:14,20:34:99:773,0,489
1	15441029	rs34135602	T	C	1339.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=-0.008;DB;DP=56;FS=4.759;MQ=60.00;MQRankSum=2.267;QD=23.91;ReadPosRankSum=2.045;SOR=1.182	GT:AD:DP:GQ:PL	0/1:21,35:56:99:1370,0,739
1	15444643	rs2235781	A	G	58.98	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.231;ClippingRankSum=1.231;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.358;QD=29.49;ReadPosRankSum=1.231;SOR=0.446	GT:AD:DP:GQ:PL	0/0:2,0:2:6:0,6,88
1	15495100	rs41307800	C	T	2009.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.303;ClippingRankSum=0.669;DB;DP=121;FS=4.098;MQ=60.00;MQRankSum=0.931;QD=18.26;ReadPosRankSum=1.619;SOR=0.393	GT:AD:DP:GQ:PL	0/0:121,0:121:99:0,364,5234
1	15497727	rs6429722	T	C	5918.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.472;DB;DP=78;FS=4.512;MQ=60.00;MQRankSum=1.483;QD=21.29;ReadPosRankSum=0.139;SOR=0.981	GT:AD:DP:GQ:PL	0/1:52,26:78:99:844,0,1916
1	15497832	rs41307794	T	C	4222.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=-1.552;DB;DP=71;FS=2.265;MQ=60.00;MQRankSum=-1.001;QD=16.50;ReadPosRankSum=1.606;SOR=0.554	GT:AD:DP:GQ:PL	0/1:37,34:71:99:1183,0,1415
1	15497844	rs10429935	T	A	4119.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=-1.552;DB;DP=64;FS=1.167;MQ=60.00;MQRankSum=1.428;QD=17.99;ReadPosRankSum=-0.466;SOR=0.811	GT:AD:DP:GQ:PL	0/1:34,30:64:99:1066,0,1271
1	15497954	rs6689923	A	G	2315.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=0.684;DB;DP=48;FS=0.000;MQ=60.00;MQRankSum=1.415;QD=14.04;ReadPosRankSum=0.913;SOR=1.041	GT:AD:DP:GQ:PL	0/1:30,18:48:99:648,0,1136
1	15541398	rs3753318	C	T	587.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.500;ClippingRankSum=-0.478;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=-0.253;QD=19.57;ReadPosRankSum=3.669;SOR=0.047	GT:AD:DP:GQ:PL	0/0:28,0:28:93:0,93,1752
1	15541399	rs3753317	A	G	587.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.689;ClippingRankSum=-0.166;DB;DP=29;FS=0.000;MQ=60.00;MQRankSum=-0.529;QD=18.94;ReadPosRankSum=2.602;SOR=0.051	GT:AD:DP:GQ:PL	0/0:29,0:29:93:0,93,1752
1	15541407	rs3753316	C	T	1241.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=-0.472;DB;DP=29;FS=0.000;MQ=60.00;MQRankSum=0.334;QD=21.77;ReadPosRankSum=0.529;SOR=0.278	GT:AD:DP:GQ:PL	0/1:13,16:29:99:613,0,485
1	15541412	rs3753315	G	A	783.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.801;ClippingRankSum=1.128;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=-0.685;QD=19.58;ReadPosRankSum=-0.907;SOR=0.085	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1167
1	15541537	rs3753314	C	T	12448.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;FS=0.000;MQ=60.00;QD=22.19;SOR=3.505	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3574,252,0
1	15541607	rs3820065	T	C	1661.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.843;ClippingRankSum=1.822;DB;DP=124;FS=11.085;MQ=60.00;MQRankSum=-0.046;QD=15.97;ReadPosRankSum=0.466;SOR=0.257	GT:AD:DP:GQ:PL	0/0:124,0:124:99:0,373,5298
1	15545567	rs146176561	ACCTGT	A	326.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.404;ClippingRankSum=-1.493;DB;DP=18;FS=0.000;MQ=60.29;MQRankSum=-0.295;QD=11.65;ReadPosRankSum=-0.278;SOR=0.144	GT:AD:DP:GQ:PL	0/0:18,0:18:54:0,54,1261
1	15546077	rs3753313	G	A	13128.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=-0.348;DB;DP=195;FS=1.214;MQ=60.00;MQRankSum=-0.542;QD=18.01;ReadPosRankSum=1.550;SOR=0.816	GT:AD:DP:GQ:PL	0/1:88,107:195:99:3775,0,3133
1	15573689	rs1780596	A	G	252.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.400;DB;DP=8;FS=0.000;MQ=60.00;MQRankSum=-1.999;QD=13.31;ReadPosRankSum=0.044;SOR=1.022	GT:AD:DP:GQ:PL	0/1:3,5:8:99:185,0,107
1	15573699	rs142342714	A	AC	172.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=-0.337;DB;DP=8;FS=5.315;MQ=60.00;MQRankSum=-1.684;QD=10.17;ReadPosRankSum=-0.529;SOR=0.105	GT:AD:DP:GQ:PL	0/1:6,2:8:42:42,0,172
1	15573711	rs1752018	C	A	311.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.599;DB;DP=8;FS=1.971;MQ=60.00;MQRankSum=0.176;QD=14.85;ReadPosRankSum=1.655;SOR=1.508	GT:AD:DP:GQ:PL	0/1:3,5:8:99:163,0,110
1	15573758	rs1780597	G	A	409.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;ClippingRankSum=1.951;DB;DP=8;FS=8.873;MQ=60.00;MQRankSum=0.241;QD=14.14;ReadPosRankSum=-0.987;SOR=2.419	GT:AD:DP:GQ:PL	0/1:4,4:8:99:137,0,150
1	15573769	rs1752017	G	A	377.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135;ClippingRankSum=-0.742;DB;DP=7;FS=1.447;MQ=60.00;MQRankSum=-0.022;QD=13.03;ReadPosRankSum=-0.202;SOR=0.998	GT:AD:DP:GQ:PL	0/1:5,2:7:69:69,0,204
1	15573775	rs1780598	A	G	412.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.155;DB;DP=7;FS=1.529;MQ=60.00;MQRankSum=0.111;QD=14.24;ReadPosRankSum=-0.996;SOR=1.288	GT:AD:DP:GQ:PL	0/1:4,3:7:99:104,0,159
1	15573950	rs1780599	A	C	318.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=1.022;DB;DP=6;FS=0.000;MQ=60.00;MQRankSum=-0.165;QD=14.50;ReadPosRankSum=0.033;SOR=0.446	GT:AD:DP:GQ:PL	0/1:2,4:6:70:144,0,70
1	15574076	rs1752016	C	T	168.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=-0.987;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=0.493;QD=7.68;ReadPosRankSum=1.692;SOR=1.140	GT:AD:DP:GQ:PL	0/1:1,2:3:31:80,0,31
1	15578195	rs1622686	T	C	3585.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=-0.041;DB;DP=58;FS=0.000;MQ=60.00;MQRankSum=1.033;QD=18.11;ReadPosRankSum=2.416;SOR=0.703	GT:AD:DP:GQ:PL	0/1:28,30:58:99:1127,0,1006
1	15616139	rs486557	G	A	6521.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=-1.619;DB;DP=102;FS=1.732;MQ=60.00;MQRankSum=0.212;QD=17.87;ReadPosRankSum=2.972;SOR=0.791	GT:AD:DP:GQ:PL	0/1:46,56:102:99:2036,0,1620
1	15616183	rs487338	T	C	6922.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.258;DB;DP=105;FS=3.813;MQ=60.00;MQRankSum=-0.545;QD=18.31;ReadPosRankSum=1.196;SOR=0.909	GT:AD:DP:GQ:PL	0/1:56,49:105:99:1764,0,2098
1	15635500	rs10489961	G	T	757.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=-0.024;DB;DP=19;FS=4.284;MQ=60.00;MQRankSum=0.698;QD=17.61;ReadPosRankSum=-1.183;SOR=0.080	GT:AD:DP:GQ:PL	0/1:10,9:19:99:316,0,365
1	15650784	rs3765354	T	G	2686.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=-0.682;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=3.078;QD=31.98;ReadPosRankSum=0.300;SOR=2.247	GT:AD:DP:GQ:PL	0/1:11,17:28:99:676,0,835
1	15650791	rs3765355	G	C	2779.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.264;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=-0.460;QD=31.58;ReadPosRankSum=-0.343;SOR=2.356	GT:AD:DP:GQ:PL	0/1:12,16:28:99:636,0,838
1	15651062	rs3765356	A	G	3426.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=-0.850;DB;DP=30;FS=7.515;MQ=60.00;MQRankSum=-1.181;QD=27.63;ReadPosRankSum=0.889;SOR=0.123	GT:AD:DP:GQ:PL	0/1:12,18:30:99:626,0,427
1	15653503	rs7532559	A	G	3315.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.933;DB;DP=44;FS=0.000;MQ=60.00;MQRankSum=-0.102;QD=23.35;ReadPosRankSum=0.007;SOR=0.900	GT:AD:DP:GQ:PL	0/1:17,27:44:99:940,0,583
1	15653563	rs3765357	C	T	6886.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;ClippingRankSum=-0.388;DB;DP=80;FS=2.021;MQ=60.00;MQRankSum=-0.171;QD=27.00;ReadPosRankSum=3.602;SOR=0.880	GT:AD:DP:GQ:PL	0/1:28,52:80:99:1963,0,935
1	15653872	rs10127456	G	A	3538.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.816;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=-0.153;QD=24.23;ReadPosRankSum=-0.636;SOR=1.334	GT:AD:DP:GQ:PL	0/1:20,22:42:99:785,0,737
1	15654737	.	C	CT	1041.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.417;DP=38;FS=0.800;MQ=60.37;MQRankSum=-0.022;QD=7.24;ReadPosRankSum=0.260;SOR=0.574	GT:AD:DP:GQ:PL	0/1:18,20:38:99:351,0,352
1	15654759	.	C	T	14.43	LowQual;SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-5.999;ClippingRankSum=-0.706;DP=56;FS=39.111;MQ=60.14;MQRankSum=0.456;QD=0.34;ReadPosRankSum=-1.040;SOR=5.247	GT:AD:DP:GQ:PL	0/0:49,7:56:82:0,82,1433
1	15655944	rs56017972	G	A	4356.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=2.571;DB;DP=89;FS=10.381;MQ=60.00;MQRankSum=-0.210;QD=17.85;ReadPosRankSum=1.743;SOR=1.213	GT:AD:DP:GQ:PL	0/1:47,42:89:99:1543,0,1688
1	15668276	rs763821	G	A	4277.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.627;ClippingRankSum=0.316;DB;DP=40;FS=1.283;MQ=60.00;MQRankSum=0.607;QD=25.01;ReadPosRankSum=1.148;SOR=0.815	GT:AD:DP:GQ:PL	0/1:21,19:40:99:725,0,733
1	15687059	rs4661330	A	G	1605.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.003;ClippingRankSum=-0.166;DB;DP=35;FS=3.309;MQ=60.00;MQRankSum=0.374;QD=18.04;ReadPosRankSum=0.754;SOR=1.091	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1398
1	15701350	rs76821031	T	G	676.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-3.383;ClippingRankSum=0.874;DB;DP=18;FS=0.000;MQ=60.83;MQRankSum=0.931;QD=19.89;ReadPosRankSum=-1.824;SOR=0.904	GT:AD:DP:GQ:PL	0/0:18,0:18:54:0,54,1002
1	15701356	rs10159174	G	C	599.92	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.190;ClippingRankSum=-0.132;DB;DP=18;FS=0.000;MQ=60.93;MQRankSum=0.893;QD=21.43;ReadPosRankSum=-1.156;SOR=0.892	GT:AD:DP:GQ:PL	0/0:18,0:18:60:0,60,953
1	15701359	.	TG	T	505.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.007;ClippingRankSum=1.415;DP=16;FS=0.000;MQ=61.02;MQRankSum=1.388;QD=19.43;ReadPosRankSum=-0.979;SOR=0.659	GT:AD:DP:GQ:PL	0/0:16,0:16:54:0,54,929
1	15702297	rs2496342	T	G	2249.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.502;ClippingRankSum=2.054;DB;DP=46;FS=2.292;MQ=60.00;MQRankSum=-0.205;QD=21.63;ReadPosRankSum=-0.953;SOR=0.429	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1875
1	15707137	rs3737690	C	T	3194.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.072;ClippingRankSum=-0.324;DB;DP=111;FS=5.255;MQ=60.00;MQRankSum=1.749;QD=15.89;ReadPosRankSum=1.235;SOR=0.456	GT:AD:DP:GQ:PL	0/0:111,0:111:99:0,333,4814
1	15707984	rs2473333	G	A	1539.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.324;ClippingRankSum=-1.913;DB;DP=30;FS=2.678;MQ=60.00;MQRankSum=-1.141;QD=16.73;ReadPosRankSum=0.611;SOR=1.352	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1310
1	15708540	rs1010294	A	G	3914.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.208;ClippingRankSum=-1.683;DB;DP=91;FS=0.953;MQ=60.00;MQRankSum=-0.091;QD=19.67;ReadPosRankSum=1.783;SOR=0.773	GT:AD:DP:GQ:PL	0/0:91,0:91:99:0,273,3870
1	15709555	rs3820067	A	G	3040.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.656;DB;DP=69;FS=20.574;MQ=60.00;MQRankSum=0.665;QD=17.88;ReadPosRankSum=-2.598;SOR=1.883	GT:AD:DP:GQ:PL	0/0:69,0:69:99:0,208,2905
1	15710113	rs3737691	C	G	414.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.107;ClippingRankSum=1.254;DB;DP=15;FS=0.000;MQ=60.00;MQRankSum=2.228;QD=16.57;ReadPosRankSum=0.369;SOR=0.368	GT:AD:DP:GQ:PL	0/0:15,0:15:45:0,45,653
1	15710411	rs2496338	G	C	1149.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.519;ClippingRankSum=-0.107;DB;DP=19;FS=3.011;MQ=60.64;MQRankSum=0.006;QD=23.94;ReadPosRankSum=-0.158;SOR=0.341	GT:AD:DP:GQ:PL	0/0:19,0:19:57:0,57,821
1	15710493	rs3831918	CAT	C	588.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.324;ClippingRankSum=-0.142;DB;DP=15;FS=0.000;MQ=61.02;MQRankSum=0.168;QD=21.78;ReadPosRankSum=0.453;SOR=0.653	GT:AD:DP:GQ:PL	0/0:15,0:15:45:0,45,673
1	15714716	rs72643654	G	A	654.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.857;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=0.780;QD=12.83;ReadPosRankSum=1.572;SOR=0.339	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1342
1	15714831	rs6669577	C	T	323.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MQ=64.03;QD=12.43;SOR=6.518	GT:AD:DP:GQ:PL	1/1:0,8:8:19:195,19,0
1	15717838	rs2473338	A	G	2289.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.581;ClippingRankSum=-0.846;DB;DP=54;FS=5.294;MQ=60.00;MQRankSum=-0.555;QD=20.26;ReadPosRankSum=3.576;SOR=1.944	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,163,2350
1	15723843	rs2294490	G	A	944.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.603;ClippingRankSum=-0.251;DB;DP=62;FS=9.042;MQ=60.00;MQRankSum=-0.342;QD=15.23;ReadPosRankSum=3.492;SOR=1.664	GT:AD:DP:GQ:PL	0/1:35,27:62:99:975,0,1332
1	15724003	rs2253371	A	G	2876.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.565;DB;DP=63;FS=2.504;MQ=60.00;MQRankSum=0.237;QD=16.34;ReadPosRankSum=1.831;SOR=0.964	GT:AD:DP:GQ:PL	0/0:63,0:63:99:0,190,2738
1	15724033	rs2253372	A	G	3964.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.418;DB;DP=65;FS=9.081;MQ=60.00;MQRankSum=-0.476;QD=19.06;ReadPosRankSum=1.202;SOR=2.025	GT:AD:DP:GQ:PL	0/1:29,36:65:99:1336,0,1056
1	15754484	rs2473356	T	C	2776.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;ClippingRankSum=-0.853;DB;DP=48;FS=6.796;MQ=60.00;MQRankSum=-0.805;QD=14.62;ReadPosRankSum=1.584;SOR=1.169	GT:AD:DP:GQ:PL	0/1:33,15:48:99:505,0,1300
1	15755248	rs3765372	C	T	469.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.082;DB;DP=19;FS=3.927;MQ=60.00;MQRankSum=0.735;QD=20.40;ReadPosRankSum=1.116;SOR=1.525	GT:AD:DP:GQ:PL	0/0:19,0:19:57:0,57,821
1	15769876	rs79878581	G	GC	9801.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;FS=0.000;MQ=60.34;QD=34.76;SOR=2.659	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3164,268,0
1	15783096	.	GA	G	8892.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.821;ClippingRankSum=1.983;DP=80;FS=0.000;MQ=59.96;MQRankSum=-0.379;QD=25.12;ReadPosRankSum=0.876;SOR=1.184	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2267,240,0
1	15783117	rs5772642	C	CA	14505.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;FS=0.000;MQ=60.10;QD=30.17;SOR=1.591	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3957,319,0
1	15788269	rs3737696	A	C	13338.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;FS=0.000;MQ=60.00;QD=29.21;SOR=1.024	GT:AD:DP:GQ:PL	1/1:0,101:101:99:4266,303,0
1	15789297	rs3815787	A	C	3940.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.167;ClippingRankSum=-1.156;DB;DP=185;FS=3.453;MQ=60.00;MQRankSum=-1.117;QD=21.18;ReadPosRankSum=-0.120;SOR=1.008	GT:AD:DP:GQ:PL	0/1:78,107:185:99:3971,0,2709
1	15789446	rs3815788	C	G	1942.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.449;DB;DP=93;FS=0.000;MQ=60.00;MQRankSum=0.772;QD=20.88;ReadPosRankSum=1.918;SOR=0.501	GT:AD:DP:GQ:PL	0/1:44,49:93:99:1973,0,3340
1	15789450	rs3815789	T	A	1921.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=-0.893;DB;DP=92;FS=0.000;MQ=60.00;MQRankSum=0.988;QD=20.88;ReadPosRankSum=0.442;SOR=0.517	GT:AD:DP:GQ:PL	0/1:43,49:92:99:1952,0,3281
1	15802925	rs72643675	G	T	1722.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;ClippingRankSum=-0.389;DB;DP=87;FS=4.672;MQ=60.00;MQRankSum=0.089;QD=19.57;ReadPosRankSum=-0.633;SOR=1.075	GT:AD:DP:GQ:PL	0/1:39,48:87:99:1753,0,1347
1	15812432	rs6429745	A	G	9429.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.000;MQ=60.00;QD=36.76;SOR=3.082	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2558,186,0
1	15813751	rs2011159	C	T	15791.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;FS=0.000;MQ=59.95;QD=34.32;SOR=3.314	GT:AD:DP:GQ:PL	1/1:0,112:112:99:4818,336,0
1	15813836	rs61742388	T	C	7758.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;ClippingRankSum=-0.312;DB;DP=185;FS=4.189;MQ=60.00;MQRankSum=-2.075;QD=19.35;ReadPosRankSum=2.495;SOR=0.969	GT:AD:DP:GQ:PL	0/1:82,103:185:99:3671,0,2963
1	15813969	rs3737704	A	C	3219.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.558;ClippingRankSum=1.516;DB;DP=88;FS=7.741;MQ=59.41;MQRankSum=-1.741;QD=18.40;ReadPosRankSum=1.242;SOR=0.100	GT:AD:DP:GQ:PL	0/1:42,46:88:99:1727,0,1467
1	15820307	rs56104933	A	AC	436.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.925;DB;DP=45;FS=0.000;MQ=60.00;MQRankSum=0.088;QD=11.18;ReadPosRankSum=-0.489;SOR=0.254	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1470
1	15820576	rs2020900	T	A	1159.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=-0.040;DB;DP=49;FS=4.896;MQ=60.00;MQRankSum=1.772;QD=14.31;ReadPosRankSum=-1.535;SOR=1.863	GT:AD:DP:GQ:PL	0/1:28,21:49:99:717,0,1071
1	15820607	rs2020895	A	G	635.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.356;ClippingRankSum=-1.469;DB;DP=35;FS=3.078;MQ=60.00;MQRankSum=0.049;QD=15.88;ReadPosRankSum=-2.013;SOR=0.129	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1508
1	15820618	rs2020898	A	G	1149.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.331;ClippingRankSum=1.880;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=1.274;QD=15.12;ReadPosRankSum=-0.148;SOR=0.458	GT:AD:DP:GQ:PL	0/1:20,14:34:99:508,0,754
1	15821673	rs4646092	C	T	610.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.214;ClippingRankSum=-0.067;DB;DP=41;FS=0.000;MQ=60.00;MQRankSum=0.454;QD=16.95;ReadPosRankSum=1.382;SOR=0.030	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,122,1712
1	15822043	rs4646091	T	C	1027.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.836;DB;DP=50;FS=1.369;MQ=59.99;MQRankSum=0.481;QD=18.34;ReadPosRankSum=0.576;SOR=0.388	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2126
1	15822118	rs4646088	G	A	419.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.123;DB;DP=27;FS=0.000;MQ=59.92;MQRankSum=-0.011;QD=15.52;ReadPosRankSum=2.197;SOR=0.030	GT:AD:DP:GQ:PL	0/1:15,12:27:99:450,0,571
1	15831038	rs4646051	G	A	698.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=-0.265;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-1.757;QD=20.53;ReadPosRankSum=1.504;SOR=0.623	GT:AD:DP:GQ:PL	0/1:15,19:34:99:729,0,430
1	15832383	rs1800614	G	T	532.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.427;ClippingRankSum=-0.173;DB;DP=53;FS=0.000;MQ=60.00;MQRankSum=0.248;QD=12.09;ReadPosRankSum=-1.343;SOR=0.067	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,159,2198
1	15832543	rs1052576	T	C	1075.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.271;ClippingRankSum=-0.317;DB;DP=104;FS=2.372;MQ=60.00;MQRankSum=0.005;QD=12.95;ReadPosRankSum=0.754;SOR=0.737	GT:AD:DP:GQ:PL	0/0:104,0:104:99:0,312,4459
1	15833345	rs4646037	C	T	803.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=-1.568;DB;DP=46;FS=1.285;MQ=60.00;MQRankSum=0.616;QD=17.46;ReadPosRankSum=2.790;SOR=1.016	GT:AD:DP:GQ:PL	0/1:23,23:46:99:834,0,853
1	15833506	rs2308950	C	T	1171.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.927;ClippingRankSum=-0.653;DB;DP=77;FS=3.382;MQ=60.00;MQRankSum=-1.031;QD=15.62;ReadPosRankSum=1.003;SOR=0.789	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,231,3284
1	15834297	rs2020903	G	A	356.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.159;ClippingRankSum=-0.313;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-0.559;QD=11.13;ReadPosRankSum=2.200;SOR=0.232	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1463
1	15834360	rs2020902	A	G	673.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.958;ClippingRankSum=1.016;DB;DP=41;FS=5.406;MQ=60.00;MQRankSum=-0.109;QD=14.63;ReadPosRankSum=-1.894;SOR=1.410	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,122,1707
1	15834491	rs4646032	G	A	511.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.537;ClippingRankSum=-1.241;DB;DP=55;FS=6.153;MQ=60.00;MQRankSum=0.750;QD=10.88;ReadPosRankSum=1.532;SOR=1.694	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,166,2407
1	15844615	rs1132312	A	G	1097.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.745;DB;DP=52;FS=6.855;MQ=60.00;MQRankSum=0.512;QD=16.88;ReadPosRankSum=0.858;SOR=0.131	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,2214
1	15844926	rs1820205	C	T	1119.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.300;ClippingRankSum=0.740;DB;DP=86;FS=0.000;MQ=60.00;MQRankSum=0.163;QD=15.99;ReadPosRankSum=2.482;SOR=0.612	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,258,3666
1	15845022	rs4646006	C	CTGAG	843.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.756;ClippingRankSum=0.169;DB;DP=67;FS=2.192;MQ=60.06;MQRankSum=0.565;QD=17.94;ReadPosRankSum=-0.269;SOR=1.244	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,202,4264
1	15850483	rs4645985	G	A	200.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.699;DB;DP=7;FS=17.621;MQ=60.00;MQRankSum=-0.826;QD=13.34;ReadPosRankSum=-1.016;SOR=0.005	GT:AD:DP:GQ:PL	0/1:5,2:7:67:67,0,202
1	15850553	rs56744980	C	CGGGGGCG	223.65	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.745;ClippingRankSum=1.359;DB;DP=5;FS=4.964;MQ=60.00;MQRankSum=-0.482;QD=30.71;ReadPosRankSum=0.395;SOR=1.108	GT:AD:DP:GQ:PL	0/0:5,0:5:15:0,15,225
1	15850603	rs4645983	G	A	89.24	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.050;DB;DP=5;FS=2.570;MQ=60.00;MQRankSum=-0.452;QD=17.85;ReadPosRankSum=-0.452;SOR=0.991	GT:AD:DP:GQ:PL	0/0:5,0:5:15:0,15,225
1	15850613	rs1052571	G	A	83.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.634;ClippingRankSum=1.040;DB;DP=7;FS=2.515;MQ=60.00;MQRankSum=-0.149;QD=11.88;ReadPosRankSum=1.560;SOR=1.002	GT:AD:DP:GQ:PL	0/0:7,0:7:21:0,21,303
1	15860563	rs6703016	T	A	1207.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=-0.564;DB;DP=23;FS=0.000;MQ=60.00;MQRankSum=0.381;QD=25.15;ReadPosRankSum=1.010;SOR=0.324	GT:AD:DP:GQ:PL	0/1:10,13:23:99:502,0,368
1	15860803	rs11583306	C	T	1777.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.931;ClippingRankSum=0.159;DB;DP=97;FS=3.654;MQ=60.00;MQRankSum=0.257;QD=19.97;ReadPosRankSum=3.458;SOR=0.620	GT:AD:DP:GQ:PL	0/0:97,0:97:99:0,292,4212
1	15862857	rs113167917	G	A	347.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.731;DB;DP=18;FS=0.000;MQ=59.56;MQRankSum=1.037;QD=19.29;ReadPosRankSum=0.775;SOR=0.446	GT:AD:DP:GQ:PL	0/1:8,10:18:99:378,0,291
1	15873410	.	C	CTTTTTTTTTTTTTTTT	283.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=-0.318;DP=12;FS=0.000;MQ=60.00;MQRankSum=0.318;QD=3.08;ReadPosRankSum=-2.392;SOR=0.495	GT:AD:DP:GQ:PL	0/1:6,6:12:99:109,0,130
1	15886344	rs11583040	A	C	738.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.939;ClippingRankSum=-1.148;DB;DP=28;FS=0.000;MQ=59.09;MQRankSum=0.715;QD=18.45;ReadPosRankSum=1.529;SOR=0.705	GT:AD:DP:GQ:PL	0/0:28,0:28:83:0,83,1109
1	15890355	rs58397417	A	AAAAG	574.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=-1.167;DB;DP=14;FS=0.000;MQ=61.81;MQRankSum=-0.021;QD=16.40;ReadPosRankSum=1.549;SOR=0.693	GT:AD:DP:GQ:PL	0/1:7,7:14:99:274,0,227
1	15892277	rs139308799	GA	G	323.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.055;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=0.067;QD=11.14;ReadPosRankSum=-1.657;SOR=0.300	GT:AD:DP:GQ:PL	0/1:15,13:28:99:363,0,420
1	15892415	rs2236215	A	C	2172.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.347;DB;DP=51;FS=1.424;MQ=60.00;MQRankSum=0.137;QD=19.05;ReadPosRankSum=1.972;SOR=0.852	GT:AD:DP:GQ:PL	0/1:23,28:51:99:1068,0,854
1	15893862	rs2042367	C	T	808.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=1.603;DB;DP=23;FS=9.922;MQ=60.00;MQRankSum=0.817;QD=16.49;ReadPosRankSum=0.240;SOR=0.022	GT:AD:DP:GQ:PL	0/1:13,10:23:99:350,0,501
1	15899905	.	G	GA	615.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0.383;DP=25;FS=0.000;MQ=60.00;MQRankSum=1.328;QD=11.39;ReadPosRankSum=1.130;SOR=0.459	GT:AD:DP:GQ:PL	0/1:12,13:25:99:302,0,285
1	15901121	rs61213091	C	T	1105.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.613;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=1.694;QD=18.12;ReadPosRankSum=1.024;SOR=0.307	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,169,2430
1	15904318	rs11544523	C	T	1117.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.660;DB;DP=70;FS=10.496;MQ=60.00;MQRankSum=-0.050;QD=16.67;ReadPosRankSum=0.929;SOR=0.219	GT:AD:DP:GQ:PL	0/0:70,0:70:99:0,210,2968
1	15905501	rs41270261	G	A	1332.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.247;ClippingRankSum=-2.637;DB;DP=72;FS=7.539;MQ=60.00;MQRankSum=0.366;QD=17.53;ReadPosRankSum=-0.319;SOR=0.265	GT:AD:DP:GQ:PL	0/0:72,0:72:99:0,216,3090
1	15906696	rs34166013	CT	C	182.18	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=-0.646;DB;DP=8;FS=4.993;MQ=60.08;MQRankSum=-0.154;QD=1.82;ReadPosRankSum=-1.262;SOR=2.093	GT:AD:DP:GQ:PL	0/1:3,5:8:23:63,0,23
1	15909441	rs10803393	C	T	419.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.330;DB;DP=8;FS=2.464;MQ=59.88;MQRankSum=0.903;QD=17.47;ReadPosRankSum=-1.017;SOR=0.144	GT:AD:DP:GQ:PL	0/1:4,4:8:99:150,0,153
1	15909547	rs6429756	G	A	868.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.333;DB;DP=40;FS=3.985;MQ=60.00;MQRankSum=-0.993;QD=12.06;ReadPosRankSum=-0.309;SOR=0.192	GT:AD:DP:GQ:PL	0/1:26,14:40:99:446,0,970
1	15909624	rs111921608	TGAGTACAG	T	2051.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.608;DB;DP=50;FS=0.000;MQ=60.00;MQRankSum=0.117;QD=18.65;ReadPosRankSum=-0.114;SOR=0.741	GT:AD:DP:GQ:PL	0/1:25,25:50:99:975,0,968
1	15909744	rs11580170	C	T	1855.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=-0.322;DB;DP=46;FS=11.231;MQ=60.00;MQRankSum=-0.441;QD=17.67;ReadPosRankSum=0.387;SOR=1.430	GT:AD:DP:GQ:PL	0/1:25,21:46:99:780,0,902
1	15909850	rs6429757	C	G	2176.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=1.172;DB;DP=56;FS=2.445;MQ=60.00;MQRankSum=-0.250;QD=16.74;ReadPosRankSum=2.472;SOR=0.481	GT:AD:DP:GQ:PL	0/1:31,25:56:99:871,0,1125
1	15909895	rs6429758	A	G	1191.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=-0.019;DB;DP=36;FS=1.386;MQ=60.00;MQRankSum=-0.662;QD=16.32;ReadPosRankSum=0.286;SOR=0.433	GT:AD:DP:GQ:PL	0/1:20,16:36:99:566,0,700
1	15911010	rs10927807	T	G	1558.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=1.169;DB;DP=45;FS=0.000;MQ=60.00;MQRankSum=0.042;QD=16.58;ReadPosRankSum=0.924;SOR=0.664	GT:AD:DP:GQ:PL	0/1:25,20:45:99:707,0,922
1	15911031	rs10927808	T	G	1801.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=-0.118;DB;DP=54;FS=0.693;MQ=60.00;MQRankSum=-1.562;QD=16.08;ReadPosRankSum=-1.347;SOR=0.579	GT:AD:DP:GQ:PL	0/1:27,27:54:99:924,0,994
1	15911131	rs59475085	G	A	1871.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=1.082;DB;DP=69;FS=7.279;MQ=60.00;MQRankSum=0.264;QD=15.34;ReadPosRankSum=0.897;SOR=1.269	GT:AD:DP:GQ:PL	0/1:40,29:69:99:1015,0,1418
1	15911493	rs6687474	A	G	687.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;ClippingRankSum=-1.008;DB;DP=30;FS=3.074;MQ=60.00;MQRankSum=0.943;QD=14.02;ReadPosRankSum=0.358;SOR=0.148	GT:AD:DP:GQ:PL	0/1:20,10:30:99:347,0,755
1	15944384	rs75354298	G	A	822.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.267;ClippingRankSum=-0.425;DB;DP=33;FS=2.014;MQ=60.00;MQRankSum=-0.932;QD=17.13;ReadPosRankSum=1.963;SOR=0.976	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1455
1	15956610	rs72647119	A	G	1157.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.305;DB;DP=60;FS=0.000;MQ=60.00;MQRankSum=-0.509;QD=16.07;ReadPosRankSum=0.915;SOR=0.747	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,181,2592
1	15956769	rs72647120	G	T	1647.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.999;ClippingRankSum=-0.990;DB;DP=96;FS=0.000;MQ=60.00;MQRankSum=0.798;QD=16.81;ReadPosRankSum=2.407;SOR=0.675	GT:AD:DP:GQ:PL	0/0:96,0:96:99:0,289,4078
1	15959886	rs3795762	C	G	1988.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;ClippingRankSum=1.044;DB;DP=59;FS=5.617;MQ=60.00;MQRankSum=1.561;QD=17.14;ReadPosRankSum=1.167;SOR=1.895	GT:AD:DP:GQ:PL	0/1:25,34:59:99:1264,0,858
1	15959977	rs3795763	C	T	1520.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.012;DB;DP=80;FS=2.237;MQ=60.00;MQRankSum=0.741;QD=16.70;ReadPosRankSum=0.764;SOR=0.483	GT:AD:DP:GQ:PL	0/0:80,0:80:99:0,239,3297
1	15978553	.	C	CTTTTTTTT	236.56	PASS	AC=1;AF=0.500;AN=2;DP=1;FS=0.000;MQ=60.00;QD=3.58;SOR=3.611	GT:AD:DP:GQ:PL	0/1:0,1:1:0:13,0,0
1	15986547	rs3766163	T	C	2591.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.224;DB;DP=116;FS=0.000;MQ=60.00;MQRankSum=-0.150;QD=19.78;ReadPosRankSum=-0.066;SOR=0.586	GT:AD:DP:GQ:PL	0/0:116,0:116:99:0,349,5052
1	16011005	.	G	GGGC,GGGCGGCGGCGGCGGCGGGGC	587.12	PASS	AC=1,0;AF=0.500,0.00;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.577;DP=19;FS=0.000;MQ=60.00;MQRankSum=-1.061;QD=17.27;ReadPosRankSum=-1.147;SOR=0.153	GT:AD:DP:GQ:PL	0/1:10,9,0:19:99:380,0,392,378,444,1120
1	16051584	rs4661647	C	T	2617.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.000;MQ=60.00;QD=28.91;SOR=2.985	GT:AD:DP:GQ:PL	1/1:0,19:19:57:819,57,0
1	16056942	rs35232208	G	GA	461.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.171;DB;DP=36;FS=5.692;MQ=60.00;MQRankSum=0.846;QD=7.32;ReadPosRankSum=-0.208;SOR=0.033	GT:AD:DP:GQ:PL	0/1:22,14:36:99:292,0,521
1	16058489	rs72647153	C	T	2011.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.787;ClippingRankSum=-0.823;DB;DP=65;FS=1.500;MQ=60.00;MQRankSum=0.393;QD=20.52;ReadPosRankSum=1.102;SOR=0.506	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,196,2833
1	16065276	.	AAC	A	40.13	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.181;DP=19;FS=0.000;MQ=60.00;MQRankSum=0.439;QD=1.67;ReadPosRankSum=-0.990;SOR=0.043	GT:AD:DP:GQ:PL	0/1:16,3:19:51:51,0,494
1	16065303	rs147907985	ACACACT	A	1378.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=1.471;DB;DP=14;FS=0.000;MQ=60.15;MQRankSum=0.205;QD=18.63;ReadPosRankSum=-2.285;SOR=0.307	GT:AD:DP:GQ:PL	0/1:6,8:14:99:313,0,369
1	16074468	rs10927846	T	A	109.91	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.896;ClippingRankSum=-0.678;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=-0.597;QD=13.74;ReadPosRankSum=-1.663;SOR=0.495	GT:AD:DP:GQ:PL	0/0:3,0:3:9:0,9,99
1	16074494	rs45615332	C	T	117.60	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.922;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=0.000;SOR=0.223	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,45
1	16091234	.	A	C	84.25	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.799;ClippingRankSum=-0.423;DP=9;FS=0.000;MQ=60.00;MQRankSum=0.423;QD=14.04;ReadPosRankSum=0.423;SOR=0.200	GT:AD:DP:GQ:PL	0/0:9,0:9:27:0,27,353
1	16095316	rs2271545	C	T	5529.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.00;QD=32.14;SOR=6.502	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1597,114,0
1	16096893	rs12146078	C	T	2317.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=-0.800;DB;DP=25;FS=0.000;MQ=60.00;MQRankSum=1.218;QD=25.46;ReadPosRankSum=0.147;SOR=1.132	GT:AD:DP:GQ:PL	0/1:19,6:25:99:190,0,649
1	16096934	rs10927851	C	T	5176.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.000;MQ=59.97;QD=30.03;SOR=4.157	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1437,102,0
1	16097237	rs10803398	G	A	4904.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.000;MQ=60.00;QD=29.15;SOR=6.666	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1486,102,0
1	16133838	rs66673012	A	T	1631.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.344;ClippingRankSum=1.885;DB;DP=60;FS=3.562;MQ=58.14;MQRankSum=-3.290;QD=12.08;ReadPosRankSum=0.718;SOR=0.107	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,181,2581
1	16133987	rs7417535	T	C	5341.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.460;ClippingRankSum=-0.573;DB;DP=127;FS=0.000;MQ=53.91;MQRankSum=-12.401;QD=17.86;ReadPosRankSum=0.469;SOR=0.721	GT:AD:DP:GQ:PL	0/0:127,0:127:99:0,382,5416
1	16134072	rs61744357	C	T	4874.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.069;ClippingRankSum=-0.772;DB;DP=144;FS=3.572;MQ=59.55;MQRankSum=0.476;QD=15.77;ReadPosRankSum=3.759;SOR=0.585	GT:AD:DP:GQ:PL	0/0:144,0:144:99:0,432,6146
1	16245610	rs35883633	GT	G	1017.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.347;ClippingRankSum=0.068;DB;DP=39;FS=2.222;MQ=60.00;MQRankSum=-0.451;QD=9.08;ReadPosRankSum=0.974;SOR=0.984	GT:AD:DP:GQ:PL	0/1:25,14:39:99:284,0,597
1	16255007	rs72649638	C	T	2714.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;ClippingRankSum=-1.031;DB;DP=139;FS=0.000;MQ=60.00;MQRankSum=0.719;QD=19.53;ReadPosRankSum=-0.670;SOR=0.725	GT:AD:DP:GQ:PL	0/1:66,73:139:99:2745,0,2417
1	16256007	rs848209	T	C	7204.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.622;ClippingRankSum=-1.011;DB;DP=64;FS=9.313;MQ=60.00;MQRankSum=-0.477;QD=34.11;ReadPosRankSum=1.294;SOR=0.242	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2794,193,0
1	16259813	rs848210	A	G	18904.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;ClippingRankSum=-0.099;DB;DP=167;FS=1.764;MQ=60.00;MQRankSum=-1.114;QD=25.50;ReadPosRankSum=-0.020;SOR=0.994	GT:AD:DP:GQ:PL	1/1:0,167:167:99:7087,501,0
1	16261814	rs41269151	C	A	5616.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=-0.700;DB;DP=300;FS=0.000;MQ=59.97;MQRankSum=0.433;QD=18.60;ReadPosRankSum=-0.318;SOR=0.747	GT:AD:DP:GQ:PL	0/1:144,156:300:99:5647,0,5106
1	16262471	.	A	C	117.39	SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=-0.612;DP=24;FS=66.941;MQ=60.00;MQRankSum=-0.190;QD=2.17;ReadPosRankSum=-1.605;SOR=3.410	GT:AD:DP:GQ:PL	0/1:19,5:24:99:136,0,1183
1	16262476	.	T	C	30.60	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.372;ClippingRankSum=0.113;DP=31;FS=55.462;MQ=60.00;MQRankSum=0.085;QD=0.99;ReadPosRankSum=-2.412;SOR=4.606	GT:AD:DP:GQ:PL	0/1:26,5:31:60:60,0,2036
1	16262477	.	G	C	31.27	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.006;ClippingRankSum=0.950;DP=32;FS=53.044;MQ=60.00;MQRankSum=-1.478;QD=0.98;ReadPosRankSum=-2.781;SOR=4.606	GT:AD:DP:GQ:PL	0/1:27,5:32:60:60,0,2036
1	16263452	rs848212	A	G	1415.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.487;DB;DP=12;FS=0.000;MQ=60.00;MQRankSum=-0.974;QD=30.13;ReadPosRankSum=-0.379;SOR=3.003	GT:AD:DP:GQ:PL	1/1:0,12:12:36:519,36,0
1	16265060	.	CT	C	826.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=1.902;DP=37;FS=0.000;MQ=60.17;MQRankSum=0.166;QD=6.35;ReadPosRankSum=-0.577;SOR=1.098	GT:AD:DP:GQ:PL	0/1:13,24:37:99:332,0,115
1	16265403	rs115404746	A	G	3233.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;ClippingRankSum=-0.459;DB;DP=89;FS=0.000;MQ=60.00;MQRankSum=-0.602;QD=16.93;ReadPosRankSum=1.258;SOR=0.725	GT:AD:DP:GQ:PL	0/1:45,44:89:99:1560,0,1647
1	16265422	rs848214	A	G	8571.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.387;ClippingRankSum=-0.324;DB;DP=81;FS=0.994;MQ=60.00;MQRankSum=-0.155;QD=30.53;ReadPosRankSum=0.084;SOR=0.563	GT:AD:DP:GQ:PL	1/1:0,81:81:99:3492,244,0
1	16265904	rs41269155	T	A	4164.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.903;ClippingRankSum=1.404;DB;DP=109;FS=0.000;MQ=60.00;MQRankSum=-1.201;QD=16.66;ReadPosRankSum=0.445;SOR=0.678	GT:AD:DP:GQ:PL	0/0:109,0:109:99:0,328,4628
1	16269477	rs144073028	T	TG	1944.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.600;DB;DP=70;FS=2.586;MQ=60.09;MQRankSum=0.468;QD=12.38;ReadPosRankSum=-1.090;SOR=0.456	GT:AD:DP:GQ:PL	0/0:69,1:70:99:0,180,2120
1	16269737	rs4661672	C	T	4347.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.373;ClippingRankSum=-1.442;DB;DP=111;FS=3.680;MQ=60.00;MQRankSum=0.208;QD=15.81;ReadPosRankSum=1.934;SOR=0.892	GT:AD:DP:GQ:PL	0/0:110,1:111:99:0,289,4539
1	16271156	rs12134932	C	A	3132.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.599;DB;DP=90;FS=0.480;MQ=60.00;MQRankSum=-0.555;QD=16.93;ReadPosRankSum=1.315;SOR=0.739	GT:AD:DP:GQ:PL	0/1:48,42:90:99:1352,0,1777
1	16271260	rs9661939	G	A	2277.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.578;DB;DP=127;FS=1.676;MQ=60.00;MQRankSum=-0.586;QD=17.65;ReadPosRankSum=-0.508;SOR=0.581	GT:AD:DP:GQ:PL	0/1:62,65:127:99:2308,0,2201
1	16272250	rs848217	A	G	5655.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.587;ClippingRankSum=-1.478;DB;DP=93;FS=3.963;MQ=60.00;MQRankSum=1.439;QD=26.31;ReadPosRankSum=0.426;SOR=0.994	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3850,279,0
1	16340460	rs1763601	G	T	91.36	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.406;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.406;QD=18.27;ReadPosRankSum=-0.988;SOR=0.132	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,45
1	16341733	rs1048237	T	C	609.91	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.486;ClippingRankSum=-0.307;DB;DP=17;FS=1.991;MQ=60.00;MQRankSum=0.384;QD=24.40;ReadPosRankSum=-0.897;SOR=1.554	GT:AD:DP:GQ:PL	0/0:17,0:17:51:0,51,710
1	16342237	rs1739840	A	G	2250.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.583;ClippingRankSum=1.919;DB;DP=40;FS=3.031;MQ=60.00;MQRankSum=0.704;QD=27.79;ReadPosRankSum=0.491;SOR=0.412	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1689
1	16342350	rs761759	A	T	1027.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.074;ClippingRankSum=-0.578;DB;DP=18;FS=10.382;MQ=60.00;MQRankSum=1.367;QD=29.37;ReadPosRankSum=1.312;SOR=3.360	GT:AD:DP:GQ:PL	0/0:18,0:18:54:0,54,745
1	16342419	rs761760	A	G	704.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.724;ClippingRankSum=1.563;DB;DP=15;FS=3.025;MQ=60.00;MQRankSum=0.572;QD=26.11;ReadPosRankSum=-0.674;SOR=1.966	GT:AD:DP:GQ:PL	0/0:15,0:15:45:0,45,655
1	16344360	rs732286	A	G	5076.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.980;ClippingRankSum=0.210;DB;DP=94;FS=2.353;MQ=60.00;MQRankSum=1.085;QD=29.86;ReadPosRankSum=3.003;SOR=0.527	GT:AD:DP:GQ:PL	0/0:94,0:94:99:0,282,3959
1	16344402	rs945416	G	A	5409.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.571;ClippingRankSum=-1.459;DB;DP=101;FS=2.607;MQ=60.00;MQRankSum=0.347;QD=29.09;ReadPosRankSum=0.614;SOR=0.555	GT:AD:DP:GQ:PL	0/0:101,0:101:99:0,304,4382
1	16344494	rs1572381	G	A	4560.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.169;DB;DP=90;FS=8.500;MQ=60.00;MQRankSum=-1.136;QD=24.52;ReadPosRankSum=-0.978;SOR=1.139	GT:AD:DP:GQ:PL	0/0:90,0:90:99:0,270,3760
1	16344625	rs945417	C	G	3984.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.669;ClippingRankSum=-1.349;DB;DP=68;FS=2.720;MQ=60.00;MQRankSum=-1.085;QD=25.38;ReadPosRankSum=-0.473;SOR=0.516	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,205,2958
1	16344664	rs872222	G	A	744.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.589;ClippingRankSum=1.673;DB;DP=61;FS=3.144;MQ=60.00;MQRankSum=-0.899;QD=13.78;ReadPosRankSum=-0.219;SOR=0.239	GT:AD:DP:GQ:PL	0/0:61,0:61:99:0,182,2555
1	16344730	rs945418	T	C	2018.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.319;DB;DP=41;FS=21.636;MQ=60.00;MQRankSum=-1.346;QD=26.92;ReadPosRankSum=0.325;SOR=0.011	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1778
1	16345619	rs945422	T	C	3284.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.266;ClippingRankSum=-1.696;DB;DP=60;FS=0.000;MQ=60.00;MQRankSum=-1.290;QD=28.32;ReadPosRankSum=-0.392;SOR=0.921	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,180,2554
1	16346009	rs3841842	G	GC	783.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.117;ClippingRankSum=-1.149;DB;DP=75;FS=0.000;MQ=60.04;MQRankSum=1.771;QD=9.91;ReadPosRankSum=-0.983;SOR=0.684	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,226,2386
1	16350028	rs2017583	A	G	901.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.017;ClippingRankSum=-1.166;DB;DP=21;FS=0.000;MQ=59.85;MQRankSum=0.333;QD=25.77;ReadPosRankSum=-0.100;SOR=0.404	GT:AD:DP:GQ:PL	0/0:21,0:21:63:0,63,907
1	16350123	rs2017577	C	G	2578.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.042;DB;DP=50;FS=1.131;MQ=59.31;MQRankSum=-1.328;QD=27.15;ReadPosRankSum=0.864;SOR=0.519	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2137
1	16350262	rs1537803	A	G	3179.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.975;ClippingRankSum=-0.601;DB;DP=67;FS=4.426;MQ=60.00;MQRankSum=-0.473;QD=20.12;ReadPosRankSum=-1.254;SOR=1.026	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,202,2916
1	16351275	rs10927887	A	G	3046.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.327;ClippingRankSum=-0.423;DB;DP=42;FS=6.990;MQ=58.93;MQRankSum=-0.219;QD=29.30;ReadPosRankSum=2.498;SOR=2.152	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1792
1	16352937	rs1010069	G	A	1944.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.830;ClippingRankSum=-0.157;DB;DP=107;FS=0.774;MQ=60.00;MQRankSum=-1.604;QD=19.06;ReadPosRankSum=2.719;SOR=0.525	GT:AD:DP:GQ:PL	0/0:107,0:107:99:0,321,4509
1	16353400	rs9442216	T	C	4627.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.521;ClippingRankSum=-0.616;DB;DP=83;FS=1.013;MQ=59.84;MQRankSum=-1.099;QD=28.92;ReadPosRankSum=0.079;SOR=0.509	GT:AD:DP:GQ:PL	0/0:83,0:83:99:0,249,3585
1	16353482	rs67179509	A	G	1491.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.310;ClippingRankSum=1.628;DB;DP=41;FS=1.667;MQ=60.00;MQRankSum=-0.367;QD=14.34;ReadPosRankSum=1.161;SOR=0.903	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1789
1	16354280	rs10927889	G	C	3107.90	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.070;ClippingRankSum=-1.233;DB;DP=66;FS=3.680;MQ=39.80;MQRankSum=0.386;QD=27.75;ReadPosRankSum=-1.344;SOR=0.985	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,196,2684
1	16354590	rs12126269	A	T	3932.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.186;ClippingRankSum=-1.136;DB;DP=96;FS=1.740;MQ=60.00;MQRankSum=1.208;QD=17.02;ReadPosRankSum=3.564;SOR=0.835	GT:AD:DP:GQ:PL	0/0:96,0:96:99:0,288,4122
1	16355525	rs7366320	G	A	3012.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.130;ClippingRankSum=-0.783;DB;DP=171;FS=5.273;MQ=57.50;MQRankSum=-2.091;QD=11.91;ReadPosRankSum=1.813;SOR=0.922	GT:AD:DP:GQ:PL	0/0:171,0:171:99:0,513,7209
1	16355577	rs59235129	TGGG	T	3505.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.694;ClippingRankSum=-1.174;DB;DP=176;FS=5.091;MQ=52.06;MQRankSum=-14.920;QD=12.26;ReadPosRankSum=-0.408;SOR=0.576	GT:AD:DP:GQ:PL	0/0:176,0:176:99:0,529,7923
1	16355614	rs45457595	G	A	5395.16	SNP_MQRankSumLow	AC=0;AF=0.00;AN=2;BaseQRankSum=4.111;ClippingRankSum=-0.720;DB;DP=182;FS=5.655;MQ=46.95;MQRankSum=-13.303;QD=15.37;ReadPosRankSum=1.234;SOR=0.528	GT:AD:DP:GQ:PL	0/0:181,1:182:99:0,501,7623
1	16355877	rs34398185	G	A	4094.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.046;ClippingRankSum=-0.489;DB;DP=122;FS=7.890;MQ=60.00;MQRankSum=0.042;QD=17.20;ReadPosRankSum=-0.801;SOR=0.274	GT:AD:DP:GQ:PL	0/0:122,0:122:99:0,366,5233
1	16356187	rs1972359	C	T	3707.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.442;ClippingRankSum=0.358;DB;DP=101;FS=0.611;MQ=60.00;MQRankSum=1.175;QD=20.15;ReadPosRankSum=1.293;SOR=0.772	GT:AD:DP:GQ:PL	0/0:101,0:101:99:0,304,4358
1	16356497	rs7411607	C	G	3108.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.209;ClippingRankSum=1.076;DB;DP=109;FS=1.843;MQ=59.04;MQRankSum=0.358;QD=18.07;ReadPosRankSum=2.190;SOR=0.548	GT:AD:DP:GQ:PL	0/0:109,0:109:99:0,331,5558
1	16356501	rs1805152	G	A	5301.90	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.296;ClippingRankSum=-0.225;DB;DP=101;FS=0.508;MQ=59.00;MQRankSum=-2.896;QD=31.01;ReadPosRankSum=0.162;SOR=0.649	GT:AD:DP:GQ:PL	0/0:101,0:101:99:0,304,4361
1	16356522	rs34471231	A	G	3143.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.743;ClippingRankSum=-0.413;DB;DP=104;FS=0.544;MQ=58.82;MQRankSum=-1.146;QD=20.41;ReadPosRankSum=-0.168;SOR=0.643	GT:AD:DP:GQ:PL	0/0:104,0:104:99:0,313,5402
1	16356531	rs35747151	G	A	3173.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.913;DB;DP=96;FS=0.569;MQ=58.74;MQRankSum=-4.330;QD=21.73;ReadPosRankSum=-0.311;SOR=0.610	GT:AD:DP:GQ:PL	0/0:96,0:96:99:0,301,5260
1	16356533	rs35154011	T	C	3101.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.370;ClippingRankSum=0.754;DB;DP=93;FS=0.000;MQ=58.74;MQRankSum=-4.508;QD=21.10;ReadPosRankSum=-0.581;SOR=0.648	GT:AD:DP:GQ:PL	0/0:93,0:93:99:0,289,5084
1	16356583	rs3737218	C	T	679.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.162;ClippingRankSum=0.040;DB;DP=68;FS=4.237;MQ=58.80;MQRankSum=2.834;QD=11.32;ReadPosRankSum=1.613;SOR=1.261	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,204,2871
1	16356869	rs12729970	C	T	939.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.101;DB;DP=28;FS=2.881;MQ=60.00;MQRankSum=0.388;QD=10.79;ReadPosRankSum=2.173;SOR=0.337	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,1236
1	16356915	rs12729991	C	G	1448.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.903;ClippingRankSum=-0.779;DB;DP=45;FS=0.000;MQ=60.00;MQRankSum=1.995;QD=13.66;ReadPosRankSum=-0.147;SOR=0.892	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1878
1	16357147	rs12140223	C	T	4364.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=5.024;ClippingRankSum=2.066;DB;DP=120;FS=3.537;MQ=47.61;MQRankSum=-1.733;QD=15.31;ReadPosRankSum=3.364;SOR=0.560	GT:AD:DP:GQ:PL	0/0:119,1:120:99:0,350,5067
1	16358085	rs883867	C	A	3028.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.666;ClippingRankSum=1.129;DB;DP=85;FS=13.662;MQ=60.00;MQRankSum=2.016;QD=16.55;ReadPosRankSum=3.905;SOR=2.281	GT:AD:DP:GQ:PL	0/0:84,1:85:99:0,216,3527
1	16358134	rs2015515	T	C	3515.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.048;ClippingRankSum=-0.669;DB;DP=113;FS=4.466;MQ=59.97;MQRankSum=1.086;QD=16.27;ReadPosRankSum=-0.587;SOR=1.138	GT:AD:DP:GQ:PL	0/0:113,0:113:99:0,349,6824
1	16358148	rs2015509	T	C	6717.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.775;ClippingRankSum=-0.915;DB;DP=128;FS=4.052;MQ=59.97;MQRankSum=0.248;QD=30.26;ReadPosRankSum=-0.030;SOR=0.997	GT:AD:DP:GQ:PL	0/0:128,0:128:99:0,385,5523
1	16358366	rs12141388	C	T	2689.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.452;ClippingRankSum=2.765;DB;DP=90;FS=0.000;MQ=51.60;MQRankSum=-0.477;QD=14.46;ReadPosRankSum=2.500;SOR=0.719	GT:AD:DP:GQ:PL	0/0:90,0:90:99:0,270,3734
1	16358520	rs12131197	T	C	3919.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.240;ClippingRankSum=-1.341;DB;DP=64;FS=4.277;MQ=55.02;MQRankSum=-10.376;QD=18.23;ReadPosRankSum=2.926;SOR=1.004	GT:AD:DP:GQ:PL	0/1:35,29:64:99:1012,0,1277
1	16358685	rs6669935	C	G	1287.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.559;ClippingRankSum=-1.111;DB;DP=77;FS=3.247;MQ=59.97;MQRankSum=0.915;QD=17.88;ReadPosRankSum=0.832;SOR=0.985	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,232,3306
1	16358932	rs10803407	T	C	7157.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.950;ClippingRankSum=0.296;DB;DP=112;FS=6.221;MQ=60.00;MQRankSum=2.241;QD=26.32;ReadPosRankSum=1.130;SOR=0.997	GT:AD:DP:GQ:PL	0/0:112,0:112:99:0,334,4473
1	16359051	rs10927892	C	A	4862.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.327;DB;DP=62;FS=8.490;MQ=60.00;MQRankSum=0.018;QD=28.95;ReadPosRankSum=1.625;SOR=1.304	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,190,3079
1	16359052	rs10927893	A	G	6166.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.290;DB;DP=61;FS=4.268;MQ=60.00;MQRankSum=-0.619;QD=27.16;ReadPosRankSum=0.656;SOR=1.075	GT:AD:DP:GQ:PL	0/1:33,28:61:99:1005,0,1159
1	16359106	rs10803408	C	T	1188.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.012;ClippingRankSum=-0.122;DB;DP=49;FS=2.314;MQ=60.00;MQRankSum=0.035;QD=17.47;ReadPosRankSum=-0.975;SOR=1.088	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2624
1	16359123	rs9442217	A	G	3555.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.327;ClippingRankSum=-0.252;DB;DP=49;FS=3.032;MQ=60.00;MQRankSum=0.342;QD=28.22;ReadPosRankSum=2.709;SOR=2.241	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2090
1	16359827	rs3738633	A	G	2240.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.238;DB;DP=129;FS=3.227;MQ=59.98;MQRankSum=-0.381;QD=17.10;ReadPosRankSum=1.464;SOR=0.993	GT:AD:DP:GQ:PL	0/0:129,0:129:99:0,387,5500
1	16359951	rs12746443	C	T	2087.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.332;ClippingRankSum=-0.831;DB;DP=74;FS=22.666;MQ=56.66;MQRankSum=3.052;QD=16.31;ReadPosRankSum=-1.503;SOR=1.642	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,223,3212
1	16360053	rs113049949	CT	C	1023.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.938;ClippingRankSum=-0.228;DB;DP=38;FS=0.000;MQ=58.49;MQRankSum=1.807;QD=16.24;ReadPosRankSum=-1.979;SOR=0.776	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1477
1	16360137	rs12746751	C	T	1121.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.015;DB;DP=52;FS=12.122;MQ=45.69;MQRankSum=0.213;QD=11.80;ReadPosRankSum=0.178;SOR=0.905	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,157,2204
1	16360190	rs28418375	A	C	1066.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.975;ClippingRankSum=-0.620;DB;DP=53;FS=15.187;MQ=40.83;MQRankSum=0.460;QD=11.59;ReadPosRankSum=-1.847;SOR=0.382	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,158,2147
1	16360316	rs57537563	A	T	131.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.433;DB;DP=42;FS=13.245;MQ=40.03;MQRankSum=0.476;QD=4.37;ReadPosRankSum=0.119;SOR=2.554	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1687
1	16360424	rs58783141	G	C	162.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.552;ClippingRankSum=-0.127;DB;DP=57;FS=26.505;MQ=53.85;MQRankSum=-3.956;QD=4.50;ReadPosRankSum=1.283;SOR=2.516	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,174,4446
1	16360444	rs112701437	C	T	78.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.152;DB;DP=60;FS=22.090;MQ=56.83;MQRankSum=-3.352;QD=2.37;ReadPosRankSum=0.064;SOR=3.224	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,181,4607
1	16360550	rs7365925	C	G	1697.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.249;DB;DP=54;FS=3.206;MQ=44.46;MQRankSum=-5.649;QD=18.06;ReadPosRankSum=0.630;SOR=0.463	GT:AD:DP:GQ:PL	0/0:53,1:54:99:0,137,2202
1	16361737	rs2863413	A	G	249.25	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.903;ClippingRankSum=-0.576;DB;DP=30;FS=0.000;MQ=50.61;MQRankSum=-4.164;QD=8.31;ReadPosRankSum=2.751;SOR=0.028	GT:AD:DP:GQ:PL	0/0:30,0:30:93:0,93,2478
1	16361748	rs146043701	T	C	327.99	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.066;ClippingRankSum=-1.418;DB;DP=36;FS=0.000;MQ=49.34;MQRankSum=-4.456;QD=9.65;ReadPosRankSum=0.999;SOR=0.126	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,2682
1	16361875	rs11807054	A	G	1802.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=1.484;DB;DP=50;FS=9.482;MQ=40.62;MQRankSum=-7.758;QD=14.42;ReadPosRankSum=-0.638;SOR=1.955	GT:AD:DP:GQ:PL	0/1:25,25:50:99:840,0,905
1	16361916	rs11811753	G	A	238.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.149;ClippingRankSum=-0.134;DB;DP=44;FS=5.595;MQ=39.93;MQRankSum=-3.203;QD=10.82;ReadPosRankSum=-0.689;SOR=1.699	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1812
1	16361991	rs77041637	G	A	213.61	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.249;DB;DP=69;FS=34.712;MQ=53.98;MQRankSum=-4.677;QD=2.54;ReadPosRankSum=-2.900;SOR=3.594	GT:AD:DP:GQ:PL	0/0:69,0:69:99:0,211,3104
1	16362005	rs3085689	GCCCT	G	102.45	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.168;DB;DP=70;FS=21.887;MQ=55.23;MQRankSum=-4.628;QD=1.22;ReadPosRankSum=-3.266;SOR=2.229	GT:AD:DP:GQ:PL	0/0:70,0:70:99:0,220,3252
1	16362109	rs3085714	ACT	A	95.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.181;DB;DP=34;FS=0.000;MQ=56.12;MQRankSum=-1.977;QD=3.07;ReadPosRankSum=-1.543;SOR=0.054	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,5252
1	16362119	rs2863415	T	C	60.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.729;DB;DP=34;FS=0.000;MQ=57.04;MQRankSum=-2.804;QD=2.23;ReadPosRankSum=-1.309;SOR=0.024	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,5424
1	16362125	rs2863416	G	C	23.15	LowQual;SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.267;DB;DP=34;FS=0.000;MQ=57.12;MQRankSum=-2.427;QD=0.89;ReadPosRankSum=0.379;SOR=0.014	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,5434
1	16362561	rs55731534	C	G	3848.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.775;ClippingRankSum=1.468;DB;DP=100;FS=5.715;MQ=40.00;MQRankSum=-5.585;QD=25.49;ReadPosRankSum=0.104;SOR=2.252	GT:AD:DP:GQ:PL	0/0:100,0:100:99:0,300,3909
1	16362621	rs2009044	G	A	19440.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;FS=0.000;MQ=52.76;QD=25.51;SOR=1.362	GT:AD:DP:GQ:PL	1/1:0,159:159:99:6502,478,0
1	16362661	rs3978493	A	C	2996.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.749;ClippingRankSum=-2.397;DB;DP=181;FS=3.876;MQ=57.46;MQRankSum=2.599;QD=16.11;ReadPosRankSum=0.723;SOR=0.869	GT:AD:DP:GQ:PL	0/0:181,0:181:99:0,544,7705
1	16362807	rs4083860	T	A	2702.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.858;DB;DP=98;FS=11.457;MQ=40.91;MQRankSum=0.434;QD=16.18;ReadPosRankSum=0.029;SOR=2.407	GT:AD:DP:GQ:PL	0/0:98,0:98:99:0,294,3771
1	16366146	rs71631763	A	G	46.13	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.113;ClippingRankSum=-0.299;DB;DP=61;FS=9.353;MQ=57.03;MQRankSum=-3.970;QD=1.18;ReadPosRankSum=-0.426;SOR=2.289	GT:AD:DP:GQ:PL	0/0:61,0:61:99:0,186,2877
1	16366167	rs2019654	G	A	1210.14	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.458;ClippingRankSum=-2.461;DB;DP=55;FS=0.000;MQ=55.57;MQRankSum=-7.543;QD=28.96;ReadPosRankSum=1.452;SOR=0.759	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,165,2294
1	16366213	rs2003944	T	C	437.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.486;DB;DP=43;FS=5.884;MQ=50.80;MQRankSum=-4.513;QD=19.87;ReadPosRankSum=-0.602;SOR=0.170	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,135,2071
1	16366234	rs1815526	T	G	1510.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.666;DB;DP=41;FS=1.361;MQ=48.60;MQRankSum=-7.202;QD=25.18;ReadPosRankSum=0.770;SOR=0.431	GT:AD:DP:GQ:PL	0/1:19,22:41:99:729,0,703
1	16370427	rs140434107	CGGGGG	C	244.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=34.99;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,1:1:3:9,3,0
1	16370479	rs945393	T	C	273.99	PASS	AC=0;AF=0.00;AN=0;BaseQRankSum=0.747;ClippingRankSum=-0.747;DB;DP=8;FS=0.000;MQ=60.00;MQRankSum=-0.747;QD=34.25;ReadPosRankSum=-0.747;SOR=0.595	GT	./.
1	16370851	.	T	TACACACACACACAC,TACACACACACACACAC	620.88	PASS	AC=1,0;AF=0.500,0.00;AN=2;BaseQRankSum=1.134;ClippingRankSum=1.401;DP=13;FS=2.684;MQ=59.80;MQRankSum=-0.067;QD=11.09;ReadPosRankSum=-0.627;SOR=1.845	GT:AD:DP:GQ:PL	0/1:8,4,1:13:90:224,0,316,90,303,406
1	16370873	rs146972886	C	CACACACACAT	472.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.115;DB;DP=29;FS=6.586;MQ=60.64;MQRankSum=1.839;QD=17.48;ReadPosRankSum=0.748;SOR=0.077	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,1250
1	16370899	rs945394	G	A	605.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.217;DB;DP=39;FS=7.767;MQ=60.34;MQRankSum=2.952;QD=18.34;ReadPosRankSum=-0.831;SOR=0.052	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1684
1	16371067	rs2015352	G	T	796.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.273;ClippingRankSum=-1.222;DB;DP=68;FS=0.813;MQ=60.00;MQRankSum=1.506;QD=12.64;ReadPosRankSum=-0.294;SOR=0.801	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,204,2850
1	16371872	rs6604908	C	G	572.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.324;ClippingRankSum=-0.395;DB;DP=40;FS=0.000;MQ=60.00;MQRankSum=0.170;QD=16.83;ReadPosRankSum=1.168;SOR=0.743	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1714
1	16371932	rs6604909	A	C	3668.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.273;DB;DP=60;FS=0.000;MQ=60.00;MQRankSum=1.701;QD=25.12;ReadPosRankSum=-1.266;SOR=0.807	GT:AD:DP:GQ:PL	0/1:29,31:60:99:1171,0,1063
1	16372003	rs6604910	G	C	403.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.838;ClippingRankSum=-0.249;DB;DP=73;FS=9.871;MQ=60.00;MQRankSum=-0.088;QD=9.38;ReadPosRankSum=1.311;SOR=0.132	GT:AD:DP:GQ:PL	0/0:73,0:73:99:0,219,3164
1	16372282	rs67016480	GT	G	1077.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=-0.122;DB;DP=61;FS=10.532;MQ=60.00;MQRankSum=2.248;QD=6.82;ReadPosRankSum=2.838;SOR=0.133	GT:AD:DP:GQ:PL	0/1:44,17:61:99:304,0,1525
1	16372283	rs6604911	T	G	383.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.362;DB;DP=61;FS=6.529;MQ=60.00;MQRankSum=0.406;QD=11.27;ReadPosRankSum=0.755;SOR=2.240	GT:AD:DP:GQ:PL	0/0:60,1:61:99:0,154,2182
1	16372971	rs2014841	G	A	1427.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=-1.454;DB;DP=39;FS=5.140;MQ=59.09;MQRankSum=-0.744;QD=16.99;ReadPosRankSum=0.832;SOR=0.132	GT:AD:DP:GQ:PL	0/1:20,19:39:99:722,0,755
1	16373124	rs5257	A	G	2344.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=-0.663;DB;DP=91;FS=1.127;MQ=59.95;MQRankSum=1.289;QD=13.95;ReadPosRankSum=1.046;SOR=0.815	GT:AD:DP:GQ:PL	0/1:53,38:91:99:1264,0,2010
1	16373199	rs3085870	CCTT	C	2540.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;ClippingRankSum=-0.682;DB;DP=84;FS=3.386;MQ=60.04;MQRankSum=-0.730;QD=15.58;ReadPosRankSum=0.775;SOR=0.965	GT:AD:DP:GQ:PL	0/1:46,38:84:99:1425,0,1957
1	16373282	rs2095540	A	G	2046.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=1.121;DB;DP=54;FS=1.725;MQ=60.00;MQRankSum=-0.728;QD=18.95;ReadPosRankSum=1.787;SOR=0.982	GT:AD:DP:GQ:PL	0/1:23,31:54:99:1185,0,816
1	16374185	rs869704	G	A	247.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.201;DB;DP=5;FS=0.000;MQ=60.00;MQRankSum=0.068;QD=24.76;ReadPosRankSum=-1.027;SOR=1.828	GT:AD:DP:GQ:PL	0/1:1,4:5:30:161,0,30
1	16374330	rs945403	A	G	2045.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.228;ClippingRankSum=-2.463;DB;DP=24;FS=6.211;MQ=60.00;MQRankSum=-0.478;QD=30.52;ReadPosRankSum=0.037;SOR=2.494	GT:AD:DP:GQ:PL	0/1:8,16:24:99:600,0,286
1	16374533	rs2014562	G	C	3842.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=-0.370;DB;DP=54;FS=13.331;MQ=60.00;MQRankSum=0.624;QD=24.16;ReadPosRankSum=2.045;SOR=0.232	GT:AD:DP:GQ:PL	0/1:25,29:54:99:1019,0,828
1	16374590	rs2282263	C	T	1827.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.197;ClippingRankSum=-1.059;DB;DP=57;FS=0.000;MQ=60.00;MQRankSum=1.204;QD=13.95;ReadPosRankSum=0.502;SOR=0.660	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,171,2364
1	16374622	rs2863440	C	G	2698.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.383;DB;DP=59;FS=3.379;MQ=60.00;MQRankSum=0.457;QD=19.55;ReadPosRankSum=0.636;SOR=0.961	GT:AD:DP:GQ:PL	0/1:29,30:59:99:1087,0,1087
1	16374656	rs2902490	A	G	2866.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.833;ClippingRankSum=-0.182;DB;DP=72;FS=0.000;MQ=60.00;MQRankSum=-0.604;QD=18.14;ReadPosRankSum=2.168;SOR=0.710	GT:AD:DP:GQ:PL	0/1:39,33:72:99:1211,0,1443
1	16374972	rs6696349	T	G	7878.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=3.208;ClippingRankSum=0.883;DB;DP=160;FS=3.381;MQ=39.96;MQRankSum=0.178;QD=18.36;ReadPosRankSum=4.009;SOR=0.487	GT:AD:DP:GQ:PL	0/0:160,0:160:99:0,490,7107
1	16374994	rs1889788	C	T	6192.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.749;DB;DP=178;FS=0.606;MQ=40.17;MQRankSum=-0.025;QD=17.30;ReadPosRankSum=-2.245;SOR=0.758	GT:AD:DP:GQ:PL	0/1:90,88:178:99:3208,0,3243
1	16375063	rs1889789	C	G	11937.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.658;DB;DP=148;FS=8.058;MQ=50.44;MQRankSum=3.127;QD=26.65;ReadPosRankSum=1.940;SOR=1.243	GT:AD:DP:GQ:PL	0/1:69,79:148:99:3070,0,2639
1	16375064	rs1889790	A	C	11937.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=-0.518;DB;DP=143;FS=9.297;MQ=50.68;MQRankSum=2.510;QD=27.19;ReadPosRankSum=1.690;SOR=1.277	GT:AD:DP:GQ:PL	0/1:67,76:143:99:3070,0,2639
1	16375132	rs12118326	C	T	3722.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.469;ClippingRankSum=0.678;DB;DP=102;FS=4.262;MQ=59.77;MQRankSum=2.099;QD=19.29;ReadPosRankSum=1.245;SOR=1.057	GT:AD:DP:GQ:PL	0/0:102,0:102:99:0,307,4335
1	16375210	rs9633514	G	A	1255.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.462;DB;DP=81;FS=0.000;MQ=60.00;MQRankSum=-0.601;QD=15.69;ReadPosRankSum=0.848;SOR=0.679	GT:AD:DP:GQ:PL	0/0:81,0:81:99:0,243,3437
1	16375354	rs9442227	C	T	2389.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.223;ClippingRankSum=0.121;DB;DP=76;FS=1.234;MQ=60.00;MQRankSum=0.536;QD=18.81;ReadPosRankSum=-0.809;SOR=0.831	GT:AD:DP:GQ:PL	0/1:34,42:76:99:1564,0,1200
1	16375510	rs11588392	G	A	4009.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;ClippingRankSum=-0.278;DB;DP=104;FS=0.000;MQ=60.00;MQRankSum=-0.419;QD=20.15;ReadPosRankSum=1.213;SOR=0.670	GT:AD:DP:GQ:PL	0/1:46,58:104:99:2130,0,1687
1	16375838	rs7545067	C	G	3370.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=-1.735;DB;DP=110;FS=7.814;MQ=60.00;MQRankSum=1.081;QD=16.68;ReadPosRankSum=2.002;SOR=1.307	GT:AD:DP:GQ:PL	0/1:59,51:110:99:1803,0,2124
1	16376038	rs13306248	G	C	1771.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.144;DB;DP=68;FS=12.163;MQ=40.23;MQRankSum=-2.172;QD=17.20;ReadPosRankSum=0.677;SOR=1.564	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,204,2845
1	16376191	rs7367494	C	T	6385.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;ClippingRankSum=0.629;DB;DP=78;FS=5.656;MQ=40.17;MQRankSum=-2.314;QD=24.56;ReadPosRankSum=3.004;SOR=1.552	GT:AD:DP:GQ:PL	0/1:42,36:78:99:1274,0,1541
1	16376230	rs59006537	A	AT	7733.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.562;DB;DP=84;FS=3.414;MQ=47.83;MQRankSum=-3.136;QD=26.76;ReadPosRankSum=-2.924;SOR=1.052	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1811,0,1530
1	16376232	rs59924562	A	T	7762.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=1.046;DB;DP=86;FS=2.294;MQ=48.31;MQRankSum=-2.314;QD=26.58;ReadPosRankSum=-3.129;SOR=0.918	GT:AD:DP:GQ:PL	0/1:40,46:86:99:1834,0,1584
1	16376238	rs34589727	TC	T	7535.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=-0.169;DB;DP=85;FS=4.200;MQ=49.40;MQRankSum=-2.674;QD=25.89;ReadPosRankSum=-3.409;SOR=1.105	GT:AD:DP:GQ:PL	0/1:40,45:85:99:1817,0,1610
1	16376278	rs7365182	G	A	6676.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.183;DB;DP=96;FS=1.462;MQ=57.85;MQRankSum=1.751;QD=21.82;ReadPosRankSum=2.404;SOR=0.813	GT:AD:DP:GQ:PL	0/1:51,45:96:99:1644,0,1861
1	16376319	rs7368151	T	C	9200.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.590;ClippingRankSum=-1.819;DB;DP=115;FS=1.256;MQ=60.00;MQRankSum=-0.743;QD=24.47;ReadPosRankSum=-0.753;SOR=0.611	GT:AD:DP:GQ:PL	0/1:60,55:115:99:2021,0,2231
1	16376458	rs7368166	T	C	4996.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.027;DB;DP=67;FS=1.288;MQ=60.00;MQRankSum=1.027;QD=23.13;ReadPosRankSum=-0.033;SOR=0.449	GT:AD:DP:GQ:PL	0/1:39,28:67:99:971,0,1462
1	16376953	rs10927895	C	T	5388.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.550;ClippingRankSum=1.917;DB;DP=111;FS=0.000;MQ=60.00;MQRankSum=0.715;QD=20.33;ReadPosRankSum=1.167;SOR=0.673	GT:AD:DP:GQ:PL	0/0:111,0:111:99:0,333,4744
1	16377598	.	T	TG	3412.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.043;ClippingRankSum=-0.305;DP=98;FS=12.565;MQ=60.09;MQRankSum=-0.168;QD=11.89;ReadPosRankSum=1.800;SOR=1.423	GT:AD:DP:GQ:PL	0/0:98,0:98:99:0,295,3054
1	16377870	rs6650116	C	T	2647.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.124;DB;DP=93;FS=0.672;MQ=59.07;MQRankSum=2.165;QD=16.54;ReadPosRankSum=-0.628;SOR=0.567	GT:AD:DP:GQ:PL	0/0:93,0:93:99:0,279,4011
1	16377935	rs6650117	A	G	2723.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.788;ClippingRankSum=1.658;DB;DP=91;FS=8.852;MQ=60.00;MQRankSum=0.286;QD=15.92;ReadPosRankSum=0.427;SOR=1.372	GT:AD:DP:GQ:PL	0/0:91,0:91:99:0,273,3798
1	16377999	rs6650118	C	T	4775.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.596;ClippingRankSum=0.581;DB;DP=143;FS=0.576;MQ=59.99;MQRankSum=-1.803;QD=17.69;ReadPosRankSum=0.015;SOR=0.776	GT:AD:DP:GQ:PL	0/0:143,0:143:99:0,433,6428
1	16378000	rs6650119	A	G	4775.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=5.158;ClippingRankSum=1.141;DB;DP=144;FS=0.572;MQ=59.98;MQRankSum=0.727;QD=17.62;ReadPosRankSum=-0.162;SOR=0.767	GT:AD:DP:GQ:PL	0/0:144,0:144:99:0,433,6428
1	16378093	rs41269167	A	G	4230.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.123;ClippingRankSum=1.295;DB;DP=111;FS=2.449;MQ=59.31;MQRankSum=0.954;QD=16.40;ReadPosRankSum=1.521;SOR=0.850	GT:AD:DP:GQ:PL	0/0:111,0:111:99:0,337,12720
1	16378099	rs182734810	G	C	4150.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.972;ClippingRankSum=-0.502;DB;DP=112;FS=1.369;MQ=59.30;MQRankSum=-0.143;QD=16.47;ReadPosRankSum=1.075;SOR=0.780	GT:AD:DP:GQ:PL	0/0:112,0:112:99:0,343,12905
1	16378100	.	C	A	4159.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.821;DP=112;FS=0.880;MQ=59.29;MQRankSum=-2.447;QD=16.70;ReadPosRankSum=0.369;SOR=0.769	GT:AD:DP:GQ:PL	0/0:112,0:112:99:0,340,12860
1	16378215	rs5252	C	T	3807.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.286;ClippingRankSum=1.544;DB;DP=111;FS=0.457;MQ=59.84;MQRankSum=3.159;QD=17.63;ReadPosRankSum=2.782;SOR=0.639	GT:AD:DP:GQ:PL	0/0:111,0:111:99:0,333,4654
1	16378331	rs41269169	G	C	2116.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.055;ClippingRankSum=-0.464;DB;DP=70;FS=0.000;MQ=57.36;MQRankSum=-6.275;QD=16.03;ReadPosRankSum=0.818;SOR=0.645	GT:AD:DP:GQ:PL	0/0:70,0:70:99:0,214,5208
1	16378339	rs41269171	C	G	2363.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.638;ClippingRankSum=-1.361;DB;DP=66;FS=0.000;MQ=56.42;MQRankSum=-6.194;QD=17.90;ReadPosRankSum=0.389;SOR=0.757	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,211,5177
1	16378495	rs55756465	G	A	590.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.161;ClippingRankSum=1.047;DB;DP=26;FS=3.954;MQ=50.57;MQRankSum=2.855;QD=11.35;ReadPosRankSum=-1.665;SOR=1.248	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,1131
1	16378499	rs145267024	C	CTCCTG	664.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.080;ClippingRankSum=-0.513;DB;DP=24;FS=2.565;MQ=51.34;MQRankSum=2.841;QD=13.84;ReadPosRankSum=-0.831;SOR=1.096	GT:AD:DP:GQ:PL	0/0:24,0:24:73:0,73,1664
1	16378649	rs2297726	C	G	985.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=-0.127;DB;DP=54;FS=0.000;MQ=59.84;MQRankSum=-0.080;QD=18.24;ReadPosRankSum=2.689;SOR=0.770	GT:AD:DP:GQ:PL	0/1:26,28:54:99:1016,0,973
1	16378725	rs12140311	A	T	2393.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.045;DB;DP=77;FS=0.000;MQ=57.79;MQRankSum=2.319;QD=15.74;ReadPosRankSum=0.796;SOR=0.778	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,230,3254
1	16378931	rs56334930	A	G	4219.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.373;ClippingRankSum=0.685;DB;DP=134;FS=3.043;MQ=52.40;MQRankSum=-2.506;QD=15.12;ReadPosRankSum=-2.138;SOR=0.993	GT:AD:DP:GQ:PL	0/0:134,0:134:99:0,403,6015
1	16378936	rs112905730	AG	A	4281.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=5.176;ClippingRankSum=0.346;DB;DP=133;FS=5.375;MQ=53.40;MQRankSum=-2.753;QD=15.97;ReadPosRankSum=-1.704;SOR=1.101	GT:AD:DP:GQ:PL	0/0:133,0:133:99:0,415,6208
1	16378938	.	G	A	4133.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.806;ClippingRankSum=-0.024;DP=133;FS=8.543;MQ=53.51;MQRankSum=-2.535;QD=15.72;ReadPosRankSum=-1.482;SOR=1.135	GT:AD:DP:GQ:PL	0/0:133,0:133:99:0,403,6030
1	16378945	rs56331467	C	T	4006.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.960;ClippingRankSum=-0.945;DB;DP=125;FS=13.777;MQ=54.99;MQRankSum=-3.101;QD=16.55;ReadPosRankSum=-1.051;SOR=1.414	GT:AD:DP:GQ:PL	0/0:125,0:125:99:0,388,5805
1	16378951	rs56152056	T	C	3811.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=5.060;ClippingRankSum=-0.221;DB;DP=121;FS=12.244;MQ=55.86;MQRankSum=-1.880;QD=15.88;ReadPosRankSum=0.500;SOR=1.448	GT:AD:DP:GQ:PL	0/0:121,0:121:99:0,370,5533
1	16378954	rs56112410	G	A	3652.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.591;ClippingRankSum=2.252;DB;DP=119;FS=18.590;MQ=56.76;MQRankSum=-4.133;QD=16.02;ReadPosRankSum=0.585;SOR=1.811	GT:AD:DP:GQ:PL	0/0:119,0:119:99:0,361,5389
1	16378980	rs56327038	G	C	2906.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.771;ClippingRankSum=-0.054;DB;DP=96;FS=11.483;MQ=59.12;MQRankSum=-2.153;QD=15.71;ReadPosRankSum=1.950;SOR=2.159	GT:AD:DP:GQ:PL	0/0:96,0:96:99:0,289,4140
1	16378991	rs56361591	G	A	3338.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.595;ClippingRankSum=1.351;DB;DP=85;FS=7.552;MQ=59.08;MQRankSum=-1.655;QD=18.24;ReadPosRankSum=0.195;SOR=1.961	GT:AD:DP:GQ:PL	0/0:85,0:85:99:0,262,3853
1	16378998	rs55874146	T	C	3332.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.018;ClippingRankSum=1.312;DB;DP=75;FS=3.694;MQ=58.92;MQRankSum=0.833;QD=19.72;ReadPosRankSum=-0.896;SOR=1.526	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,229,3419
1	16379008	rs2050522	C	T	2246.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=-0.476;DB;DP=69;FS=5.181;MQ=58.65;MQRankSum=1.484;QD=16.16;ReadPosRankSum=1.192;SOR=0.132	GT:AD:DP:GQ:PL	0/1:36,33:69:99:1185,0,1333
1	16379015	rs199907733	G	GGGGGCTGGGA	1084.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.432;DB;DP=58;FS=0.000;MQ=58.57;MQRankSum=-3.187;QD=16.68;ReadPosRankSum=-0.168;SOR=0.403	GT:AD:DP:GQ:PL	0/1:31,27:58:99:1124,0,1188
1	16379052	rs55921124	C	G	2198.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.202;ClippingRankSum=-0.311;DB;DP=49;FS=0.000;MQ=57.19;MQRankSum=3.721;QD=17.04;ReadPosRankSum=1.299;SOR=0.274	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2123
1	16380196	rs5253	T	C	16122.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;FS=0.000;MQ=51.21;QD=31.49;SOR=2.478	GT:AD:DP:GQ:PL	1/1:0,121:121:99:5049,363,0
1	16380243	rs2275166	A	G	12201.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;ClippingRankSum=1.379;DB;DP=88;FS=0.000;MQ=43.12;MQRankSum=-1.719;QD=36.35;ReadPosRankSum=1.153;SOR=5.181	GT:AD:DP:GQ:PL	1/1:1,87:88:99:3912,227,0
1	16380252	rs2275167	C	T	11522.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;ClippingRankSum=1.080;DB;DP=82;FS=0.000;MQ=43.46;MQRankSum=-1.718;QD=28.43;ReadPosRankSum=0.740;SOR=5.760	GT:AD:DP:GQ:PL	1/1:1,81:82:99:3599,203,0
1	16380337	rs41269173	G	A	6737.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.262;DB;DP=53;FS=0.000;MQ=41.04;MQRankSum=-1.395;QD=34.73;ReadPosRankSum=-0.240;SOR=0.588	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2167,158,0
1	16381718	rs1414498	T	C	963.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.267;ClippingRankSum=-0.403;DB;DP=47;FS=0.000;MQ=60.00;MQRankSum=0.320;QD=18.88;ReadPosRankSum=0.524;SOR=0.663	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,2154
1	16381722	rs12691552	C	T	890.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.598;ClippingRankSum=-0.755;DB;DP=50;FS=0.000;MQ=60.00;MQRankSum=-0.143;QD=17.12;ReadPosRankSum=1.326;SOR=0.580	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,151,2265
1	16381792	rs12047858	T	A	1171.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.587;ClippingRankSum=-0.253;DB;DP=69;FS=0.000;MQ=60.00;MQRankSum=1.038;QD=16.04;ReadPosRankSum=-1.389;SOR=0.600	GT:AD:DP:GQ:PL	0/0:69,0:69:99:0,207,2947
1	16381816	rs12029508	C	T	1501.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.362;DB;DP=79;FS=4.486;MQ=60.00;MQRankSum=-1.050;QD=17.46;ReadPosRankSum=1.534;SOR=0.387	GT:AD:DP:GQ:PL	0/0:79,0:79:99:0,237,3411
1	16382086	rs2297727	C	T	1571.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.287;ClippingRankSum=-0.409;DB;DP=78;FS=8.858;MQ=60.00;MQRankSum=0.404;QD=18.93;ReadPosRankSum=0.187;SOR=1.385	GT:AD:DP:GQ:PL	0/0:78,0:78:99:0,235,3313
1	16382730	rs12030469	C	T	2391.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.226;ClippingRankSum=-0.343;DB;DP=106;FS=2.816;MQ=60.00;MQRankSum=0.602;QD=21.74;ReadPosRankSum=0.891;SOR=0.153	GT:AD:DP:GQ:PL	0/0:106,0:106:99:0,322,4762
1	16382791	rs12023153	G	C	2573.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.623;ClippingRankSum=1.051;DB;DP=129;FS=2.277;MQ=60.00;MQRankSum=-0.537;QD=19.95;ReadPosRankSum=-1.195;SOR=1.080	GT:AD:DP:GQ:PL	0/0:129,0:129:99:0,388,5534
1	16382827	rs77508204	CTCT	C	3218.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.398;ClippingRankSum=0.106;DB;DP=140;FS=0.000;MQ=60.00;MQRankSum=-0.448;QD=22.19;ReadPosRankSum=0.302;SOR=0.687	GT:AD:DP:GQ:PL	0/0:140,0:140:99:0,445,6620
1	16382831	rs61769890	T	A	3345.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.218;ClippingRankSum=0.690;DB;DP=141;FS=0.881;MQ=60.00;MQRankSum=0.483;QD=22.15;ReadPosRankSum=0.639;SOR=0.804	GT:AD:DP:GQ:PL	0/0:141,0:141:99:0,448,6655
1	16382834	rs61769891	T	A	3496.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.437;ClippingRankSum=-0.909;DB;DP=136;FS=0.000;MQ=60.00;MQRankSum=-2.174;QD=22.13;ReadPosRankSum=-0.722;SOR=0.736	GT:AD:DP:GQ:PL	0/0:136,0:136:99:0,427,6342
1	16382877	rs7517792	A	G	4480.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.954;ClippingRankSum=-0.554;DB;DP=203;FS=0.693;MQ=60.00;MQRankSum=-1.068;QD=20.74;ReadPosRankSum=0.533;SOR=0.597	GT:AD:DP:GQ:PL	0/0:203,0:203:99:0,609,8508
1	16383329	rs138507185	T	TC	248.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.841;ClippingRankSum=2.226;DB;DP=37;FS=5.245;MQ=55.90;MQRankSum=-0.128;QD=8.55;ReadPosRankSum=-0.450;SOR=1.313	GT:AD:DP:GQ:PL	0/0:36,1:37:98:0,98,1543
1	16383336	rs12746138	G	C	348.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.953;DB;DP=44;FS=1.183;MQ=54.22;MQRankSum=-1.162;QD=12.43;ReadPosRankSum=-1.331;SOR=0.436	GT:AD:DP:GQ:PL	0/0:43,1:44:99:0,113,1725
1	16383448	rs10803415	A	C	4046.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=-0.651;DB;DP=42;FS=3.073;MQ=40.56;MQRankSum=1.171;QD=23.39;ReadPosRankSum=1.528;SOR=0.984	GT:AD:DP:GQ:PL	0/1:21,21:42:99:687,0,690
1	16383581	rs1057844	G	T	1079.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.428;DB;DP=49;FS=3.818;MQ=40.74;MQRankSum=2.048;QD=20.36;ReadPosRankSum=1.268;SOR=1.077	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,151,2212
1	16383605	rs1057845	A	G	919.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.394;ClippingRankSum=-0.302;DB;DP=44;FS=0.000;MQ=39.73;MQRankSum=2.468;QD=18.76;ReadPosRankSum=-0.452;SOR=0.739	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,138,2054
1	16383668	rs6660218	T	G	5532.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=43.45;QD=28.25;SOR=1.846	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1416,113,0
1	16383682	rs1057854	G	C	493.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.796;ClippingRankSum=0.398;DB;DP=47;FS=18.491;MQ=48.32;MQRankSum=0.210;QD=8.50;ReadPosRankSum=-0.630;SOR=3.074	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1858
1	16383742	rs1057857	C	G	10030.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;ClippingRankSum=-1.053;DB;DP=64;FS=5.807;MQ=56.43;MQRankSum=0.927;QD=28.17;ReadPosRankSum=0.339;SOR=0.362	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2687,192,0
1	16383914	rs10927896	C	T	231.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.511;ClippingRankSum=-0.970;DB;DP=33;FS=0.000;MQ=44.37;MQRankSum=2.073;QD=5.78;ReadPosRankSum=1.617;SOR=0.511	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1363
1	16384024	rs6604913	T	A	407.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.699;ClippingRankSum=-0.718;DB;DP=25;FS=0.000;MQ=59.97;MQRankSum=-1.378;QD=9.93;ReadPosRankSum=-0.812;SOR=0.309	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,1084
1	16384056	rs7529069	G	A	739.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.186;DB;DP=22;FS=3.197;MQ=60.00;MQRankSum=-0.848;QD=22.40;ReadPosRankSum=-1.173;SOR=0.136	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,927
1	16384843	rs114956983	G	C	513.30	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.228;ClippingRankSum=-0.535;DB;DP=6;FS=2.696;MQ=46.56;MQRankSum=-2.740;QD=22.32;ReadPosRankSum=-0.157;SOR=2.066	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
1	16384868	rs12756288	G	A	168.19	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.770;ClippingRankSum=1.237;DB;DP=10;FS=15.465;MQ=41.67;MQRankSum=2.731;QD=9.89;ReadPosRankSum=-0.303;SOR=0.004	GT:AD:DP:GQ:PL	0/0:10,0:10:30:0,30,418
1	16384986	rs28496958	G	T	661.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.249;ClippingRankSum=-1.180;DB;DP=30;FS=3.357;MQ=51.42;MQRankSum=0.529;QD=12.47;ReadPosRankSum=0.319;SOR=0.107	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,2164
1	16384998	rs1807285	G	C	604.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.019;ClippingRankSum=-0.535;DB;DP=35;FS=4.011;MQ=51.30;MQRankSum=0.869;QD=10.42;ReadPosRankSum=2.511;SOR=0.071	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,108,2623
1	16384999	rs1807284	G	A	604.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.500;ClippingRankSum=0.260;DB;DP=36;FS=4.058;MQ=51.21;MQRankSum=0.885;QD=10.42;ReadPosRankSum=2.885;SOR=0.069	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,2623
1	16385042	rs77667563	G	A	349.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.173;ClippingRankSum=-0.163;DB;DP=48;FS=0.000;MQ=47.63;MQRankSum=-0.611;QD=6.13;ReadPosRankSum=1.123;SOR=0.182	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,2041
1	16385131	rs1832151	C	A	5653.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.585;DB;DP=53;FS=14.958;MQ=41.89;MQRankSum=1.813;QD=25.13;ReadPosRankSum=0.063;SOR=1.736	GT:AD:DP:GQ:PL	1/1:4,49:53:26:1890,26,0
1	16385175	rs17853748	G	A	1661.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.961;ClippingRankSum=-1.149;DB;DP=74;FS=0.000;MQ=42.14;MQRankSum=-2.808;QD=14.70;ReadPosRankSum=1.341;SOR=0.663	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,223,3093
1	16385184	rs75273615	G	A	809.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.015;ClippingRankSum=-0.377;DB;DP=76;FS=1.546;MQ=43.87;MQRankSum=-0.513;QD=6.98;ReadPosRankSum=0.307;SOR=0.849	GT:AD:DP:GQ:PL	0/0:76,0:76:99:0,235,3473
1	16385248	rs74054903	C	T	521.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.261;DB;DP=75;FS=0.000;MQ=52.40;MQRankSum=-5.976;QD=5.26;ReadPosRankSum=1.826;SOR=0.662	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,229,3389
1	16385250	rs74054904	A	G	874.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.176;ClippingRankSum=-1.772;DB;DP=73;FS=0.000;MQ=52.73;MQRankSum=-6.688;QD=9.11;ReadPosRankSum=0.608;SOR=0.716	GT:AD:DP:GQ:PL	0/0:72,1:73:99:0,210,3075
1	16385323	rs77017249	A	G	1283.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.823;DB;DP=49;FS=4.585;MQ=57.20;MQRankSum=-8.072;QD=9.23;ReadPosRankSum=-1.494;SOR=1.739	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2180
1	16385330	rs3978476	G	T	1242.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.211;DB;DP=45;FS=2.204;MQ=57.19;MQRankSum=-7.553;QD=8.94;ReadPosRankSum=-1.792;SOR=1.506	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,138,2069
1	16385797	rs3978478	C	G	393.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.885;ClippingRankSum=-0.134;DB;DP=68;FS=4.754;MQ=48.15;MQRankSum=-2.243;QD=5.87;ReadPosRankSum=2.699;SOR=0.044	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,205,2877
1	16385874	rs3978464	T	C	266.13	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.031;ClippingRankSum=-0.617;DB;DP=105;FS=4.586;MQ=56.79;MQRankSum=-9.514;QD=1.97;ReadPosRankSum=2.827;SOR=1.170	GT:AD:DP:GQ:PL	0/0:105,0:105:99:0,316,4455
1	16385980	rs3884058	G	A	1415.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.914;ClippingRankSum=-0.289;DB;DP=103;FS=0.000;MQ=58.93;MQRankSum=-0.575;QD=16.85;ReadPosRankSum=1.572;SOR=0.720	GT:AD:DP:GQ:PL	0/0:103,0:103:99:0,308,4254
1	16386008	rs2863452	T	C	1007.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.891;DB;DP=81;FS=3.208;MQ=55.55;MQRankSum=-1.701;QD=15.49;ReadPosRankSum=0.183;SOR=0.282	GT:AD:DP:GQ:PL	0/0:81,0:81:99:0,243,3399
1	16386065	rs61769893	T	A	199.16	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=0.872;ClippingRankSum=-0.942;DB;DP=46;FS=0.000;MQ=40.46;MQRankSum=-6.337;QD=1.41;ReadPosRankSum=3.718;SOR=0.468	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1948
1	16386247	rs2095543	T	C	2878.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.000;MQ=40.69;QD=35.69;SOR=0.980	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1147,84,0
1	16386305	rs33993269	G	GC	54.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.277;ClippingRankSum=-0.820;DB;DP=14;FS=8.983;MQ=51.10;MQRankSum=-2.136;QD=4.92;ReadPosRankSum=1.277;SOR=0.034	GT:AD:DP:GQ:PL	0/0:14,0:14:42:0,42,444
1	16386416	rs9442230	G	A	756.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.190;ClippingRankSum=-0.687;DB;DP=27;FS=26.734;MQ=54.72;MQRankSum=2.137;QD=24.39;ReadPosRankSum=1.673;SOR=3.041	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1101
1	16386447	rs11576236	G	C	3843.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.000;MQ=51.21;QD=28.12;SOR=0.924	GT:AD:DP:GQ:PL	1/1:0,24:24:72:999,72,0
1	16386495	rs71510977	C	T	165.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.724;ClippingRankSum=-0.815;DB;DP=7;FS=2.469;MQ=39.82;MQRankSum=0.095;QD=18.35;ReadPosRankSum=1.080;SOR=1.609	GT:AD:DP:GQ:PL	0/0:7,0:7:21:0,21,303
1	16388485	rs58894453	T	C	1821.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=3.608;ClippingRankSum=-0.295;DB;DP=51;FS=9.756;MQ=39.58;MQRankSum=-6.849;QD=12.14;ReadPosRankSum=1.088;SOR=2.644	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,2113
1	16388556	rs2863455	C	T	1429.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.253;DB;DP=68;FS=2.327;MQ=47.93;MQRankSum=3.512;QD=14.73;ReadPosRankSum=0.005;SOR=0.468	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,211,3114
1	16388565	rs7524413	C	G	1576.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.455;ClippingRankSum=-0.571;DB;DP=67;FS=0.000;MQ=49.13;MQRankSum=3.512;QD=15.45;ReadPosRankSum=0.178;SOR=0.637	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,202,3013
1	16388580	rs3978467	C	A	2164.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.706;ClippingRankSum=0.769;DB;DP=68;FS=2.928;MQ=51.75;MQRankSum=-4.814;QD=8.26;ReadPosRankSum=0.324;SOR=0.887	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,205,2910
1	16388646	rs2863456	T	C	8957.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.765;ClippingRankSum=-1.527;DB;DP=60;FS=14.829;MQ=51.76;MQRankSum=-5.607;QD=27.65;ReadPosRankSum=0.058;SOR=1.439	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2482,180,0
1	16388709	rs28570004	G	T	5054.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.239;ClippingRankSum=1.288;DB;DP=40;FS=0.912;MQ=44.63;MQRankSum=-7.661;QD=23.84;ReadPosRankSum=-0.264;SOR=0.940	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1637,120,0
1	16388756	rs148786597	CACCCAT	C	4437.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;ClippingRankSum=0.132;DB;DP=41;FS=0.000;MQ=47.85;MQRankSum=-1.258;QD=22.64;ReadPosRankSum=0.117;SOR=0.652	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1813,123,0
1	16388766	rs3978469	C	T	5325.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.387;ClippingRankSum=0.585;DB;DP=40;FS=7.445;MQ=47.84;MQRankSum=-3.054;QD=28.94;ReadPosRankSum=1.193;SOR=0.157	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1823,123,0
1	16388875	rs60748888	GCC	G	298.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.898;ClippingRankSum=1.733;DB;DP=1;FS=0.000;MQ=55.79;MQRankSum=-1.271;QD=16.57;ReadPosRankSum=-0.480;SOR=1.715	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0
1	16389118	rs11577791	G	A	426.30	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.896;ClippingRankSum=-0.158;DB;DP=5;FS=0.000;MQ=58.49;MQRankSum=-1.212;QD=23.68;ReadPosRankSum=-1.423;SOR=0.317	GT:AD:DP:GQ:PL	1/1:0,5:5:15:219,15,0
1	16455819	rs77811513	A	G	978.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.373;ClippingRankSum=-0.233;DB;DP=51;FS=6.844;MQ=60.00;MQRankSum=-0.657;QD=17.16;ReadPosRankSum=1.547;SOR=0.073	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,2125
1	16460743	rs147659128	TAAC	T	10025.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;FS=0.000;MQ=60.55;QD=33.14;SOR=1.867	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3813,256,0
1	16464673	rs2230597	G	A	4539.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.103;DB;DP=112;FS=5.613;MQ=60.00;MQRankSum=0.152;QD=17.26;ReadPosRankSum=0.167;SOR=0.985	GT:AD:DP:GQ:PL	0/1:46,66:112:99:2472,0,1584
1	16474839	rs35519704	AC	A	2365.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;ClippingRankSum=1.231;DB;DP=89;FS=1.751;MQ=60.08;MQRankSum=-0.026;QD=11.95;ReadPosRankSum=-0.821;SOR=0.929	GT:AD:DP:GQ:PL	0/1:41,48:89:99:1299,0,1066
1	16475123	rs6678616	C	T	6642.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=-0.801;DB;DP=160;FS=1.838;MQ=59.96;MQRankSum=0.153;QD=20.01;ReadPosRankSum=0.374;SOR=0.555	GT:AD:DP:GQ:PL	0/1:77,83:160:99:3230,0,4866
1	16475126	rs6678618	C	T	6596.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;ClippingRankSum=-0.893;DB;DP=159;FS=1.870;MQ=59.96;MQRankSum=0.071;QD=19.87;ReadPosRankSum=1.650;SOR=0.581	GT:AD:DP:GQ:PL	0/1:79,80:159:99:3189,0,4941
1	16524653	rs221030	A	G	46.11	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.922;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.198;QD=15.37;ReadPosRankSum=0.198;SOR=0.223	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,39
1	16525056	rs451260	G	T	585.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.396;ClippingRankSum=-0.121;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=0.561;QD=15.00;ReadPosRankSum=1.346;SOR=0.649	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,116,1599
1	16525549	rs221032	C	T	903.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.359;ClippingRankSum=1.217;DB;DP=59;FS=11.714;MQ=60.00;MQRankSum=1.046;QD=16.42;ReadPosRankSum=0.840;SOR=1.942	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,178,2577
1	16528218	rs6676143	G	T	3989.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.087;DB;DP=77;FS=3.742;MQ=60.00;MQRankSum=-0.679;QD=17.81;ReadPosRankSum=-0.126;SOR=0.659	GT:AD:DP:GQ:PL	0/1:39,38:77:99:1379,0,1472
1	16528233	rs221037	G	A	1003.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.574;ClippingRankSum=-1.345;DB;DP=80;FS=3.589;MQ=60.00;MQRankSum=0.083;QD=18.24;ReadPosRankSum=-0.327;SOR=1.048	GT:AD:DP:GQ:PL	0/0:80,0:80:99:0,240,3424
1	16528469	rs58225172	GCC	G	3473.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.623;DB;DP=34;FS=3.506;MQ=60.00;MQRankSum=0.857;QD=26.11;ReadPosRankSum=-3.336;SOR=0.367	GT:AD:DP:GQ:PL	0/1:17,17:34:99:653,0,3284
1	16528472	rs200243292	TACCCTAGGGACC	T	3466.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;ClippingRankSum=-0.808;DB;DP=35;FS=6.970;MQ=60.00;MQRankSum=-0.547;QD=26.06;ReadPosRankSum=-2.964;SOR=0.236	GT:AD:DP:GQ:PL	0/1:18,17:35:99:653,0,3284
1	16528823	rs71574165	GCCATGGGGACGGGGTGCCCA	G	736.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.466;ClippingRankSum=0.155;DB;DP=47;FS=3.260;MQ=61.09;MQRankSum=2.027;QD=16.00;ReadPosRankSum=1.398;SOR=0.114	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,2623
1	16528843	rs1693540	A	G	2502.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;ClippingRankSum=-0.414;DB;DP=45;FS=4.771;MQ=61.18;MQRankSum=-2.039;QD=18.82;ReadPosRankSum=0.572;SOR=1.931	GT:AD:DP:GQ:PL	0/1:17,28:45:99:1065,0,564
1	16529117	rs221039	T	C	739.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.475;DB;DP=51;FS=3.584;MQ=60.00;MQRankSum=-0.416;QD=15.40;ReadPosRankSum=1.132;SOR=0.235	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,2178
1	16532803	rs221050	G	A	1179.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.985;ClippingRankSum=-0.042;DB;DP=98;FS=3.406;MQ=60.00;MQRankSum=-0.421;QD=14.56;ReadPosRankSum=1.573;SOR=0.533	GT:AD:DP:GQ:PL	0/0:98,0:98:99:0,293,4132
1	16532848	rs221051	A	G	1117.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.369;ClippingRankSum=-0.780;DB;DP=98;FS=0.000;MQ=60.00;MQRankSum=-1.450;QD=13.96;ReadPosRankSum=-0.050;SOR=0.682	GT:AD:DP:GQ:PL	0/0:98,0:98:99:0,294,4145
1	16533022	rs221052	C	T	4914.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=-1.474;DB;DP=65;FS=0.801;MQ=60.00;MQRankSum=-0.087;QD=24.57;ReadPosRankSum=-0.814;SOR=0.619	GT:AD:DP:GQ:PL	0/1:32,33:65:99:1162,0,1176
1	16533085	rs3831999	A	AC	224.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.763;DB;DP=17;FS=0.000;MQ=60.00;MQRankSum=0.400;QD=13.18;ReadPosRankSum=0.860;SOR=0.374	GT:AD:DP:GQ:PL	0/0:17,0:17:54:0,54,881
1	16533096	rs221053	C	T	233.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.141;ClippingRankSum=-0.706;DB;DP=21;FS=0.000;MQ=60.00;MQRankSum=-0.121;QD=14.57;ReadPosRankSum=0.464;SOR=0.536	GT:AD:DP:GQ:PL	0/0:21,0:21:66:0,66,1056
1	16533105	rs221054	G	C	230.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.876;ClippingRankSum=-0.465;DB;DP=22;FS=0.000;MQ=60.00;MQRankSum=-0.724;QD=13.54;ReadPosRankSum=0.703;SOR=0.422	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,1020
1	16533258	rs221055	C	T	273.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.149;ClippingRankSum=-0.064;DB;DP=16;FS=16.733;MQ=60.00;MQRankSum=-0.046;QD=13.66;ReadPosRankSum=1.278;SOR=4.086	GT:AD:DP:GQ:PL	0/0:16,0:16:47:0,47,603
1	16533444	.	T	C	818.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.395;ClippingRankSum=0.555;DP=32;FS=7.583;MQ=60.00;MQRankSum=0.657;QD=11.21;ReadPosRankSum=0.035;SOR=1.809	GT:AD:DP:GQ:PL	0/1:23,9:32:99:307,0,757
1	16533817	rs170234	T	C	838.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.257;ClippingRankSum=-0.550;DB;DP=49;FS=2.919;MQ=59.74;MQRankSum=0.304;QD=17.10;ReadPosRankSum=-0.071;SOR=1.016	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2119
1	16533830	rs3832000	AATTC	A	4257.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.132;ClippingRankSum=-0.752;DB;DP=45;FS=0.000;MQ=59.05;MQRankSum=-1.365;QD=22.64;ReadPosRankSum=-0.537;SOR=0.734	GT:AD:DP:GQ:PL	0/1:19,26:45:99:1029,0,884
1	16534002	rs221056	C	G	945.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.475;ClippingRankSum=-0.759;DB;DP=76;FS=1.055;MQ=60.00;MQRankSum=0.152;QD=16.02;ReadPosRankSum=3.229;SOR=0.463	GT:AD:DP:GQ:PL	0/0:76,0:76:99:0,229,3254
1	16534255	rs221057	C	G	695.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.609;ClippingRankSum=-0.582;DB;DP=82;FS=0.000;MQ=60.00;MQRankSum=-1.589;QD=10.86;ReadPosRankSum=-1.140;SOR=0.585	GT:AD:DP:GQ:PL	0/0:82,0:82:99:0,245,3447
1	16534646	rs221058	C	G	542.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.583;ClippingRankSum=-0.665;DB;DP=62;FS=0.954;MQ=60.00;MQRankSum=-0.249;QD=9.51;ReadPosRankSum=1.809;SOR=0.552	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,186,2624
1	16534730	rs221059	G	A	488.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.771;ClippingRankSum=-0.836;DB;DP=44;FS=8.319;MQ=60.00;MQRankSum=-0.221;QD=13.95;ReadPosRankSum=-0.086;SOR=0.126	GT:AD:DP:GQ:PL	0/0:43,1:44:99:0,122,1860
1	16535804	rs221061	G	C	1694.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=1.122;DB;DP=18;FS=0.000;MQ=60.00;MQRankSum=-1.979;QD=25.67;ReadPosRankSum=0.320;SOR=0.650	GT:AD:DP:GQ:PL	0/1:10,8:18:99:289,0,357
1	16542937	rs2273312	T	G	2324.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=-0.092;DB;DP=49;FS=0.000;MQ=60.00;MQRankSum=-1.198;QD=18.59;ReadPosRankSum=0.480;SOR=0.771	GT:AD:DP:GQ:PL	0/1:21,28:49:99:1030,0,748
1	16543175	rs221024	A	C	10333.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.000;MQ=60.00;QD=27.80;SOR=3.786	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2709,187,0
1	16555566	rs1985782	A	G	7154.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.236;DB;DP=64;FS=0.000;MQ=59.35;MQRankSum=-1.141;QD=34.56;ReadPosRankSum=0.650;SOR=1.009	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2681,192,0
1	16555882	rs12748676	C	T	5470.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.902;DB;DP=40;FS=2.180;MQ=60.00;MQRankSum=-0.168;QD=24.73;ReadPosRankSum=0.162;SOR=0.322	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1722,120,0
1	16559541	rs3738631	C	G	8151.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.938;ClippingRankSum=2.091;DB;DP=71;FS=0.000;MQ=60.00;MQRankSum=2.130;QD=24.88;ReadPosRankSum=1.251;SOR=0.666	GT:AD:DP:GQ:PL	1/1:0,71:71:99:3012,213,0
1	16562968	rs6603850	C	A	4082.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.262;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=1.416;QD=34.02;ReadPosRankSum=0.622;SOR=1.186	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1390,96,0
1	16577908	rs12069239	G	C	15637.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.505;DB;DP=138;FS=3.716;MQ=60.00;MQRankSum=0.136;QD=34.90;ReadPosRankSum=-0.482;SOR=0.694	GT:AD:DP:GQ:PL	1/1:0,138:138:99:5852,414,0
1	16579070	rs4661729	C	T	2000.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.435;ClippingRankSum=-0.678;DB;DP=19;FS=0.000;MQ=60.00;MQRankSum=1.066;QD=32.79;ReadPosRankSum=0.572;SOR=0.812	GT:AD:DP:GQ:PL	1/1:0,19:19:57:815,57,0
1	16582053	rs34277220	C	T	970.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=1.033;DB;DP=30;FS=0.000;MQ=59.71;MQRankSum=-2.940;QD=15.16;ReadPosRankSum=1.489;SOR=0.197	GT:AD:DP:GQ:PL	0/1:15,15:30:99:566,0,521
1	16583030	rs71574169	C	CA	2850.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.649;ClippingRankSum=1.091;DB;DP=41;FS=3.809;MQ=60.16;MQRankSum=-2.065;QD=21.27;ReadPosRankSum=2.576;SOR=1.289	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1248,123,0
1	16621183	rs1007150	C	T	5267.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.293;ClippingRankSum=-0.740;DB;DP=44;FS=0.000;MQ=60.00;MQRankSum=0.142;QD=33.34;ReadPosRankSum=0.259;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1899,132,0
1	16621234	rs12353958	G	A	3111.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;ClippingRankSum=-0.370;DB;DP=42;FS=0.667;MQ=60.00;MQRankSum=0.802;QD=18.63;ReadPosRankSum=0.417;SOR=0.591	GT:AD:DP:GQ:PL	0/1:19,23:42:99:858,0,686
1	16693725	.	T	TG	1113.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.777;ClippingRankSum=-3.048;DP=17;FS=1.949;MQ=60.25;MQRankSum=-0.896;QD=25.89;ReadPosRankSum=0.578;SOR=0.897	GT:AD:DP:GQ:PL	1/1:0,17:17:51:543,51,0
1	16725330	rs41307763	G	A	4585.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0.121;DB;DP=66;FS=6.011;MQ=60.00;MQRankSum=-0.505;QD=18.13;ReadPosRankSum=-0.347;SOR=0.439	GT:AD:DP:GQ:PL	0/1:38,28:66:99:1030,0,1440
1	16731510	rs525409	C	G	1651.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.455;ClippingRankSum=-0.953;DB;DP=88;FS=11.991;MQ=60.00;MQRankSum=0.048;QD=23.59;ReadPosRankSum=1.587;SOR=0.333	GT:AD:DP:GQ:PL	0/0:88,0:88:99:0,265,3804
1	16731646	rs3106498	T	C	9622.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.000;MQ=60.00;QD=29.46;SOR=4.155	GT:AD:DP:GQ:PL	1/1:0,79:79:99:3316,236,0
1	16735364	.	CAAAA	C,CA	697.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=-0.742;DP=10;FS=4.715;MQ=58.13;MQRankSum=-0.057;QD=15.49;ReadPosRankSum=-0.742;SOR=3.056	GT:AD:DP:GQ:PL	1/2:0,5,5:10:63:301,101,74,90,0,63
1	16735403	rs71003282	G	GC	3021.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;ClippingRankSum=-0.339;DB;DP=40;FS=1.987;MQ=60.11;MQRankSum=-0.811;QD=22.89;ReadPosRankSum=-0.100;SOR=1.547	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1220,120,0
1	16736132	rs4661746	T	C	7745.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.887;ClippingRankSum=1.065;DB;DP=70;FS=0.000;MQ=60.00;MQRankSum=1.446;QD=23.70;ReadPosRankSum=2.027;SOR=0.796	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2883,209,0
1	16736546	rs10907226	C	T	7565.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.597;ClippingRankSum=-0.387;DB;DP=68;FS=0.786;MQ=60.00;MQRankSum=-1.349;QD=33.47;ReadPosRankSum=1.871;SOR=0.825	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2801,203,0
1	16736738	rs11584737	G	A	3912.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.788;DB;DP=38;FS=1.820;MQ=60.00;MQRankSum=-1.014;QD=34.32;ReadPosRankSum=-0.771;SOR=1.405	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1569,114,0
1	16769949	rs12064256	G	A	1964.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;ClippingRankSum=-2.201;DB;DP=60;FS=0.000;MQ=60.00;MQRankSum=0.006;QD=17.38;ReadPosRankSum=1.561;SOR=0.761	GT:AD:DP:GQ:PL	0/1:32,28:60:99:1045,0,1155
1	16776743	rs56131048	G	GT	855.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.640;DB;DP=18;FS=0.000;MQ=60.10;MQRankSum=0.282;QD=7.92;ReadPosRankSum=-0.778;SOR=0.473	GT:AD:DP:GQ:PL	0/1:10,8:18:99:176,0,234
1	16776804	rs279779	C	T	1455.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.395;DB;DP=14;FS=0.000;MQ=60.00;MQRankSum=-0.114;QD=25.99;ReadPosRankSum=0.350;SOR=0.693	GT:AD:DP:GQ:PL	0/1:6,8:14:99:301,0,158
1	16778265	rs279782	G	T	4608.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=-0.942;DB;DP=58;FS=7.532;MQ=60.00;MQRankSum=0.666;QD=25.46;ReadPosRankSum=-0.343;SOR=1.402	GT:AD:DP:GQ:PL	0/1:30,28:58:99:1024,0,1117
1	16785564	rs11543230	C	T	2845.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=1.454;DB;DP=44;FS=4.354;MQ=60.00;MQRankSum=-0.935;QD=18.01;ReadPosRankSum=0.156;SOR=2.048	GT:AD:DP:GQ:PL	0/1:16,28:44:99:1057,0,564
1	16802890	rs696095	G	A	5186.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.824;DB;DP=78;FS=4.473;MQ=55.12;MQRankSum=-0.054;QD=24.93;ReadPosRankSum=-0.733;SOR=0.443	GT:AD:DP:GQ:PL	0/1:35,43:78:99:1531,0,1279
1	16862273	rs76517011	C	A	3754.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=1.630;DB;DP=357;FS=0.000;MQ=42.17;MQRankSum=2.822;QD=4.46;ReadPosRankSum=2.845;SOR=2.958	GT:AD:DP:GQ:PL	0/1:294,63:357:99:1779,0,12971
1	16862282	rs11260784	G	A	289.13	SNP_LowQualityDepth;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.661;ClippingRankSum=-0.125;DB;DP=385;FS=0.000;MQ=40.52;MQRankSum=-1.447;QD=0.73;ReadPosRankSum=0.402;SOR=0.230	GT:AD:DP:GQ:PL	0/0:385,0:385:99:0,1188,16745
1	16862294	.	A	G	3758.16	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=1.626;DP=388;FS=0.000;MQ=37.28;MQRankSum=3.098;QD=4.03;ReadPosRankSum=0.941;SOR=2.964	GT:AD:DP:GQ:PL	0/1:318,70:388:99:1795,0,13713
1	16862296	rs1759227	G	C	18516.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.235;ClippingRankSum=2.056;DB;DP=397;FS=0.000;MQ=36.99;MQRankSum=0.861;QD=13.44;ReadPosRankSum=-1.241;SOR=0.781	GT:AD:DP:GQ:PL	0/1:181,216:397:99:6795,0,6065
1	16862340	rs200564364	G	A	13943.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=4.291;ClippingRankSum=-0.227;DB;DP=487;FS=1.907;MQ=36.94;MQRankSum=-0.477;QD=8.46;ReadPosRankSum=0.405;SOR=0.423	GT:AD:DP:GQ:PL	0/1:298,189:487:99:5662,0,9808
1	16862454	rs71248115	T	G	60522.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=9.648;ClippingRankSum=0.714;DB;DP=698;FS=1.171;MQ=38.08;MQRankSum=0.319;QD=24.42;ReadPosRankSum=1.540;SOR=0.580	GT:AD:DP:GQ:PL	0/1:282,416:698:99:16295,0,10479
1	16862461	rs145386412	T	A	75855.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=11.194;ClippingRankSum=0.287;DB;DP=692;FS=2.088;MQ=37.93;MQRankSum=0.569;QD=30.07;ReadPosRankSum=-1.364;SOR=0.534	GT:AD:DP:GQ:PL	0/1:169,523:692:99:21450,0,5100
1	16862472	rs200621127	G	C	6705.16	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.164;ClippingRankSum=0.611;DB;DP=684;FS=0.000;MQ=37.59;MQRankSum=1.567;QD=3.74;ReadPosRankSum=-1.020;SOR=0.669	GT:AD:DP:GQ:PL	0/1:572,112:684:99:2832,0,23906
1	16862502	rs141629643	A	G	57776.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=1.046;DB;DP=662;FS=6.069;MQ=36.20;MQRankSum=-3.126;QD=24.45;ReadPosRankSum=-0.484;SOR=1.001	GT:AD:DP:GQ:PL	0/1:155,507:662:99:16255,0,3963
1	16862566	rs77197089	G	A	5932.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.646;ClippingRankSum=-0.320;DB;DP=813;FS=0.000;MQ=40.20;MQRankSum=2.863;QD=2.15;ReadPosRankSum=-2.833;SOR=0.700	GT:AD:DP:GQ:PL	0/1:688,125:813:99:2482,0,24619
1	16862638	.	A	G	10939.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.878;ClippingRankSum=-0.405;DP=601;FS=0.875;MQ=39.41;MQRankSum=-0.698;QD=5.07;ReadPosRankSum=-1.130;SOR=0.957	GT:AD:DP:GQ:PL	0/1:485,116:601:99:2478,0,17057
1	16862708	rs1762987	T	G	14867.92	SNP_MappingQuality;SNP_ReadPosRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.823;DB;DP=207;FS=1.338;MQ=39.36;MQRankSum=3.150;QD=21.09;ReadPosRankSum=-12.063;SOR=0.553	GT:AD:DP:GQ:PL	0/1:96,111:207:99:4265,0,3657
1	16862712	rs61769538	G	T	14074.92	SNP_MappingQuality;SNP_ReadPosRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.933;ClippingRankSum=-1.364;DB;DP=192;FS=0.000;MQ=39.33;MQRankSum=2.902;QD=21.69;ReadPosRankSum=-13.455;SOR=0.400	GT:AD:DP:GQ:PL	0/1:91,101:192:99:4109,0,3685
1	16862714	rs61769539	T	G	13317.92	SNP_MappingQuality;SNP_ReadPosRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=-0.151;DB;DP=180;FS=0.000;MQ=39.26;MQRankSum=3.093;QD=21.73;ReadPosRankSum=-13.812;SOR=0.378	GT:AD:DP:GQ:PL	0/1:91,89:180:99:3984,0,3598
1	16862732	.	A	G	1925.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659;ClippingRankSum=0.601;DP=97;FS=2.690;MQ=39.50;MQRankSum=-7.517;QD=6.06;ReadPosRankSum=-6.781;SOR=0.159	GT:AD:DP:GQ:PL	0/1:84,13:97:99:395,0,3534
1	16862774	rs5772679	CTG	C	5033.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.643;ClippingRankSum=0.030;DB;DP=146;FS=0.000;MQ=36.11;MQRankSum=-11.691;QD=10.17;ReadPosRankSum=-1.877;SOR=2.052	GT:AD:DP:GQ:PL	0/1:103,43:146:99:1479,0,4165
1	16863105	rs80185717	G	C	6721.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.168;ClippingRankSum=-0.603;DB;DP=117;FS=6.498;MQ=36.94;MQRankSum=-10.117;QD=18.42;ReadPosRankSum=3.426;SOR=0.085	GT:AD:DP:GQ:PL	0/1:54,63:117:99:2519,0,2159
1	16863106	rs77252511	G	T	6715.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.313;ClippingRankSum=2.164;DB;DP=119;FS=6.516;MQ=36.96;MQRankSum=-10.062;QD=18.15;ReadPosRankSum=3.898;SOR=0.084	GT:AD:DP:GQ:PL	0/1:55,64:119:99:2516,0,2201
1	16863125	rs61769541	T	C	8242.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.045;ClippingRankSum=-0.411;DB;DP=132;FS=3.211;MQ=38.73;MQRankSum=-12.464;QD=19.58;ReadPosRankSum=-0.281;SOR=0.050	GT:AD:DP:GQ:PL	0/1:62,70:132:99:2795,0,2390
1	16863136	.	AC	A	169.09	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.571;DP=153;FS=0.000;MQ=40.43;MQRankSum=-4.055;QD=1.10;ReadPosRankSum=2.893;SOR=0.032	GT:AD:DP:GQ:PL	0/1:137,16:153:99:209,0,5999
1	16863144	.	C	T	8874.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.501;ClippingRankSum=-0.184;DP=160;FS=3.622;MQ=41.63;MQRankSum=-13.938;QD=16.90;ReadPosRankSum=-3.024;SOR=0.284	GT:AD:DP:GQ:PL	0/1:84,76:160:99:3005,0,3515
1	16863146	.	A	C	10251.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.424;ClippingRankSum=1.071;DP=162;FS=3.144;MQ=42.04;MQRankSum=-16.986;QD=19.49;ReadPosRankSum=-1.812;SOR=0.131	GT:AD:DP:GQ:PL	0/1:74,88:162:99:3595,0,2875
1	16863152	.	C	T	10161.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.605;ClippingRankSum=1.614;DP=168;FS=3.189;MQ=42.69;MQRankSum=-17.693;QD=18.85;ReadPosRankSum=-1.594;SOR=0.127	GT:AD:DP:GQ:PL	0/1:77,91:168:99:3583,0,3043
1	16863159	.	C	G	9254.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.157;ClippingRankSum=0.567;DP=155;FS=0.000;MQ=43.26;MQRankSum=-17.076;QD=17.36;ReadPosRankSum=0.182;SOR=0.491	GT:AD:DP:GQ:PL	0/1:77,78:155:99:3166,0,3031
1	16863165	.	G	C	10265.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;ClippingRankSum=1.382;DP=172;FS=0.000;MQ=44.27;MQRankSum=-18.734;QD=18.36;ReadPosRankSum=1.307;SOR=1.120	GT:AD:DP:GQ:PL	0/1:82,90:172:99:3610,0,3250
1	16863173	rs915327	T	C	9413.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.062;ClippingRankSum=-0.357;DB;DP=168;FS=0.000;MQ=45.80;MQRankSum=-19.912;QD=16.78;ReadPosRankSum=4.255;SOR=1.206	GT:AD:DP:GQ:PL	0/1:87,81:168:99:3115,0,3360
1	16863198	rs74528760	G	C	87.55	SNP_LowQualityDepth;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=3.184;ClippingRankSum=1.320;DB;DP=168;FS=0.000;MQ=48.76;MQRankSum=-7.717;QD=0.58;ReadPosRankSum=0.602;SOR=0.934	GT:AD:DP:GQ:PL	0/0:157,11:168:9:0,9,6308
1	16863213	rs74057444	C	G	8019.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.065;ClippingRankSum=1.294;DB;DP=160;FS=35.511;MQ=50.46;MQRankSum=-19.899;QD=14.37;ReadPosRankSum=-1.294;SOR=5.694	GT:AD:DP:GQ:PL	0/1:92,68:160:99:2584,0,3728
1	16863229	rs114249125	C	T	6240.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;ClippingRankSum=-1.737;DB;DP=163;FS=40.329;MQ=51.23;MQRankSum=-18.295;QD=11.01;ReadPosRankSum=0.257;SOR=5.968	GT:AD:DP:GQ:PL	0/1:104,59:163:99:2161,0,4231
1	16863233	rs115519831	A	C	5875.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;ClippingRankSum=0.146;DB;DP=157;FS=45.443;MQ=51.31;MQRankSum=-17.722;QD=10.55;ReadPosRankSum=-0.037;SOR=7.594	GT:AD:DP:GQ:PL	0/1:103,54:157:99:2107,0,4402
1	16863238	rs71642021	T	C	4837.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;ClippingRankSum=-0.013;DB;DP=149;FS=47.086;MQ=51.67;MQRankSum=-16.763;QD=8.98;ReadPosRankSum=0.828;SOR=7.467	GT:AD:DP:GQ:PL	0/1:105,44:149:99:1599,0,4312
1	16863257	.	A	G	1889.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.095;DP=149;FS=35.519;MQ=49.95;MQRankSum=-12.520;QD=3.33;ReadPosRankSum=-1.955;SOR=6.875	GT:AD:DP:GQ:PL	0/1:123,26:149:99:662,0,5149
1	16863259	rs114741004	T	G	3593.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.011;ClippingRankSum=0.696;DB;DP=152;FS=49.563;MQ=49.59;MQRankSum=-15.519;QD=6.26;ReadPosRankSum=-2.937;SOR=7.786	GT:AD:DP:GQ:PL	0/1:114,38:152:99:1214,0,4620
1	16863304	rs61769542	T	C	12803.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.069;DB;DP=224;FS=1.785;MQ=44.30;MQRankSum=-8.859;QD=16.39;ReadPosRankSum=-4.790;SOR=0.854	GT:AD:DP:GQ:PL	0/1:125,99:224:99:4027,0,4910
1	16863308	rs112689425	G	T	13729.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.795;ClippingRankSum=0.589;DB;DP=235;FS=2.482;MQ=44.39;MQRankSum=-7.966;QD=16.72;ReadPosRankSum=-2.241;SOR=0.903	GT:AD:DP:GQ:PL	0/1:128,107:235:99:4228,0,5113
1	16863313	rs76539488	C	T	7452.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=-1.585;DB;DP=249;FS=0.567;MQ=44.62;MQRankSum=-3.634;QD=8.63;ReadPosRankSum=-1.638;SOR=0.587	GT:AD:DP:GQ:PL	0/1:158,91:249:99:2605,0,6142
1	16863314	rs74927161	A	G	15714.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=1.939;DB;DP=251;FS=4.073;MQ=44.48;MQRankSum=-7.444;QD=18.19;ReadPosRankSum=-0.212;SOR=0.993	GT:AD:DP:GQ:PL	0/1:127,124:251:99:5182,0,5100
1	16863328	rs61769543	T	G	20954.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;ClippingRankSum=-1.524;DB;DP=300;FS=4.051;MQ=45.17;MQRankSum=-6.920;QD=21.19;ReadPosRankSum=2.515;SOR=0.721	GT:AD:DP:GQ:PL	0/1:128,172:300:99:7004,0,5092
1	16863352	rs61769544	C	T	25244.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=-1.117;DB;DP=342;FS=7.157;MQ=47.33;MQRankSum=-6.532;QD=22.95;ReadPosRankSum=3.609;SOR=0.379	GT:AD:DP:GQ:PL	0/1:128,214:342:99:8426,0,4769
1	16863398	rs61769545	A	C	13672.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.514;ClippingRankSum=0.930;DB;DP=279;FS=5.994;MQ=49.96;MQRankSum=-8.099;QD=14.81;ReadPosRankSum=2.257;SOR=0.380	GT:AD:DP:GQ:PL	0/1:146,133:279:99:4383,0,5170
1	16863484	rs199948789	C	A	432.16	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.923;ClippingRankSum=-0.517;DB;DP=141;FS=0.000;MQ=42.97;MQRankSum=-3.081;QD=1.23;ReadPosRankSum=1.076;SOR=0.255	GT:AD:DP:GQ:PL	0/1:124,17:141:99:221,0,4591
1	16863514	rs79847558	C	T	70.67	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.693;DB;DP=129;FS=0.000;MQ=43.62;MQRankSum=-6.886;QD=0.22;ReadPosRankSum=0.175;SOR=0.035	GT:AD:DP:GQ:PL	0/0:123,6:129:99:0,197,4824
1	16888863	rs74918509	C	G	53.12	PASS	AC=0;AF=0.00;AN=0;BaseQRankSum=1.026;ClippingRankSum=-1.026;DB;DP=4;FS=0.000;MQ=57.29;MQRankSum=-1.026;QD=17.71;ReadPosRankSum=0.000;SOR=0.693	GT	./.
1	16889138	rs156890	T	C	18.73	LowQual	AC=0;AF=0.00;AN=0;DB;DP=1;FS=0.000;MQ=60.00;QD=18.73;SOR=1.609	GT	./.
1	16890421	rs2990549	G	A	20795.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.605;ClippingRankSum=0.916;DB;DP=320;FS=0.000;MQ=53.89;MQRankSum=5.855;QD=15.31;ReadPosRankSum=1.737;SOR=0.809	GT:AD:DP:GQ:PL	0/1:171,149:320:99:5289,0,6825
1	16890428	rs3900708	T	A	10850.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.224;ClippingRankSum=-0.004;DB;DP=328;FS=0.000;MQ=54.89;MQRankSum=6.780;QD=7.68;ReadPosRankSum=0.103;SOR=0.680	GT:AD:DP:GQ:PL	0/1:233,95:328:99:3136,0,9499
1	16890441	rs3863779	C	T	6662.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.639;ClippingRankSum=1.559;DB;DP=375;FS=0.000;MQ=56.53;MQRankSum=-11.272;QD=4.40;ReadPosRankSum=-1.256;SOR=0.762	GT:AD:DP:GQ:PL	0/1:282,93:375:99:2723,0,11445
1	16890484	rs12117084	G	C	7868.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.145;ClippingRankSum=-0.267;DB;DP=411;FS=0.831;MQ=58.74;MQRankSum=-6.040;QD=4.78;ReadPosRankSum=1.272;SOR=0.843	GT:AD:DP:GQ:PL	0/1:307,104:411:99:3235,0,11995
1	16890598	rs2990550	T	A	50234.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=7.347;ClippingRankSum=-0.114;DB;DP=490;FS=0.000;MQ=40.42;MQRankSum=2.220;QD=24.88;ReadPosRankSum=1.132;SOR=0.750	GT:AD:DP:GQ:PL	0/1:142,348:490:99:13597,0,4293
1	16890602	rs2990551	T	G	28352.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=8.586;ClippingRankSum=-1.608;DB;DP=483;FS=3.390;MQ=40.55;MQRankSum=10.998;QD=14.02;ReadPosRankSum=-0.514;SOR=0.939	GT:AD:DP:GQ:PL	0/1:273,210:483:99:7567,0,10260
1	16890607	rs200783506	G	A	11499.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.471;ClippingRankSum=0.990;DB;DP=483;FS=3.249;MQ=41.04;MQRankSum=4.818;QD=5.76;ReadPosRankSum=-1.106;SOR=1.035	GT:AD:DP:GQ:PL	0/1:384,99:483:99:2612,0,15518
1	16890639	rs1043750	C	T	28193.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=7.176;ClippingRankSum=-1.604;DB;DP=415;FS=4.830;MQ=43.20;MQRankSum=-27.205;QD=16.16;ReadPosRankSum=-0.852;SOR=1.084	GT:AD:DP:GQ:PL	0/1:225,190:415:99:7270,0,8909
1	16890644	rs2992339	C	T	30825.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=-1.337;DB;DP=413;FS=2.897;MQ=43.45;MQRankSum=18.462;QD=18.06;ReadPosRankSum=1.094;SOR=0.493	GT:AD:DP:GQ:PL	0/1:190,223:413:99:8743,0,7290
1	16890671	rs2419526	T	C	60483.16	SNP_MQRankSumLow;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.027;ClippingRankSum=-0.264;DB;DP=356;FS=0.000;MQ=45.13;MQRankSum=-18.071;QD=28.83;ReadPosRankSum=1.347;SOR=0.771	GT:AD:DP:GQ:PL	1/1:0,356:356:99:16639,1116,0
1	16890672	rs2419525	G	A	59814.16	SNP_MQRankSumLow;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.212;DB;DP=353;FS=0.000;MQ=45.17;MQRankSum=-18.100;QD=31.01;ReadPosRankSum=1.357;SOR=0.793	GT:AD:DP:GQ:PL	1/1:0,353:353:99:16432,1101,0
1	16890760	rs1759170	G	A	19485.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=1.223;DB;DP=224;FS=0.000;MQ=50.12;MQRankSum=-21.412;QD=20.43;ReadPosRankSum=0.982;SOR=0.669	GT:AD:DP:GQ:PL	0/1:69,155:224:99:5635,0,2201
1	16891154	.	A	G	742.92	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;ClippingRankSum=0.858;DP=109;FS=6.657;MQ=39.08;MQRankSum=0.667;QD=1.68;ReadPosRankSum=0.672;SOR=0.176	GT:AD:DP:GQ:PL	0/1:99,10:109:99:101,0,4182
1	16891158	rs4112523	A	C	5129.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=-1.396;DB;DP=108;FS=3.630;MQ=39.05;MQRankSum=2.497;QD=11.63;ReadPosRankSum=1.668;SOR=0.391	GT:AD:DP:GQ:PL	0/1:76,32:108:99:1091,0,2873
1	16891207	rs139085738	T	C	232.94	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.315;DB;DP=93;FS=0.962;MQ=38.65;MQRankSum=2.061;QD=0.62;ReadPosRankSum=0.146;SOR=0.765	GT:AD:DP:GQ:PL	0/1:84,9:93:70:70,0,3298
1	16891233	rs4120702	T	C	788.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=-0.180;DB;DP=72;FS=5.969;MQ=38.38;MQRankSum=0.240;QD=2.64;ReadPosRankSum=0.591;SOR=0.298	GT:AD:DP:GQ:PL	0/1:61,11:72:99:172,0,2228
1	16891243	rs61771012	C	G	10910.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.000;MQ=38.06;QD=25.92;SOR=3.339	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2713,195,0
1	16891333	rs3872309	C	T	5980.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.759;ClippingRankSum=-1.317;DB;DP=289;FS=0.637;MQ=56.58;MQRankSum=2.485;QD=5.66;ReadPosRankSum=-1.457;SOR=0.745	GT:AD:DP:GQ:PL	0/1:232,57:289:99:1385,0,9092
1	16891340	rs3962237	T	A	129.13	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.058;ClippingRankSum=1.712;DB;DP=311;FS=0.000;MQ=56.85;MQRankSum=4.646;QD=0.45;ReadPosRankSum=0.348;SOR=0.684	GT:AD:DP:GQ:PL	0/0:294,17:311:99:0,247,12014
1	16891485	rs2289551	C	T	11616.16	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.304;DB;DP=86;FS=29.380;MQ=39.98;MQRankSum=-6.161;QD=32.27;ReadPosRankSum=1.177;SOR=2.039	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3565,259,0
1	16891601	rs200828903	T	C	219.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.851;DB;DP=101;FS=1.498;MQ=39.76;MQRankSum=-0.436;QD=0.77;ReadPosRankSum=-1.562;SOR=0.801	GT:AD:DP:GQ:PL	0/1:91,10:101:99:123,0,3554
1	16891668	.	C	G	80.17	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.251;DP=98;FS=4.745;MQ=44.41;MQRankSum=-1.439;QD=0.39;ReadPosRankSum=-2.032;SOR=1.400	GT:AD:DP:GQ:PL	0/1:90,8:98:28:28,0,3560
1	16891685	.	T	C	375.93	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.170;DP=84;FS=1.076;MQ=45.15;MQRankSum=-0.135;QD=1.21;ReadPosRankSum=0.622;SOR=0.875	GT:AD:DP:GQ:PL	0/1:73,11:84:99:186,0,2836
1	16891705	rs3900885	T	C	865.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=1.038;DB;DP=67;FS=5.457;MQ=45.21;MQRankSum=-1.052;QD=3.38;ReadPosRankSum=2.394;SOR=0.309	GT:AD:DP:GQ:PL	0/1:52,15:67:99:434,0,1951
1	16892310	rs201123634	T	G	5000.92	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=-0.715;DB;DP=84;FS=757.562;MQ=39.93;MQRankSum=-5.667;QD=19.23;ReadPosRankSum=-4.630;SOR=10.021	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1563,0,1311
1	16892407	rs138256522	A	G	3787.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434;ClippingRankSum=-0.015;DB;DP=132;FS=2.939;MQ=46.68;MQRankSum=0.866;QD=9.24;ReadPosRankSum=-0.531;SOR=0.109	GT:AD:DP:GQ:PL	0/1:84,48:132:99:1615,0,3438
1	16892419	rs200329107	A	G	5711.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.761;DB;DP=134;FS=0.000;MQ=45.11;MQRankSum=-1.220;QD=12.69;ReadPosRankSum=-0.753;SOR=0.815	GT:AD:DP:GQ:PL	0/1:82,52:134:99:1633,0,3167
1	16892545	.	C	T	204.93	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980;ClippingRankSum=0.675;DP=250;FS=0.979;MQ=45.52;MQRankSum=2.862;QD=0.82;ReadPosRankSum=-2.790;SOR=0.848	GT:AD:DP:GQ:PL	0/1:225,25:250:99:235,0,7893
1	16892561	rs149619125	C	T	28894.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;ClippingRankSum=-1.258;DB;DP=216;FS=0.000;MQ=44.08;MQRankSum=-1.569;QD=31.13;ReadPosRankSum=1.352;SOR=0.614	GT:AD:DP:GQ:PL	1/1:0,216:216:99:8983,658,0
1	16892578	rs138804673	ACT	A	3628.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.196;DB;DP=193;FS=0.000;MQ=44.44;MQRankSum=-0.121;QD=4.90;ReadPosRankSum=0.022;SOR=0.677	GT:AD:DP:GQ:PL	0/1:150,43:193:99:1328,0,6043
1	16892811	rs145957327	A	G	22865.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.512;ClippingRankSum=-0.807;DB;DP=452;FS=0.528;MQ=44.11;MQRankSum=3.277;QD=15.05;ReadPosRankSum=0.074;SOR=0.615	GT:AD:DP:GQ:PL	0/1:250,202:452:99:7134,0,8869
1	16893033	rs3983170	G	A	26034.13	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.215;ClippingRankSum=-0.095;DB;DP=171;FS=3.962;MQ=38.53;MQRankSum=-5.910;QD=34.12;ReadPosRankSum=-1.945;SOR=0.260	GT:AD:DP:GQ:PL	1/1:0,171:171:99:7053,521,0
1	16893042	rs79028649	T	A	3896.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.888;ClippingRankSum=-0.592;DB;DP=184;FS=0.674;MQ=41.74;MQRankSum=-0.300;QD=4.97;ReadPosRankSum=2.575;SOR=0.589	GT:AD:DP:GQ:PL	0/1:135,49:184:99:1430,0,4848
1	16893721	rs201533998	A	C	30.14	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=6.407;ClippingRankSum=-0.484;DB;DP=1285;FS=0.000;MQ=50.65;MQRankSum=2.383;QD=0.02;ReadPosRankSum=1.219;SOR=0.655	GT:AD:DP:GQ:PL	0/0:1208,77:1285:99:0,642,46777
1	16893813	rs58611269	A	G	123.13	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.236;DB;DP=963;FS=0.000;MQ=40.62;MQRankSum=1.215;QD=0.12;ReadPosRankSum=-2.641;SOR=0.266	GT:AD:DP:GQ:PL	0/0:963,0:963:99:0,2892,40501
1	16893854	rs199997808	A	C	3866.16	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=2.514;ClippingRankSum=0.462;DB;DP=923;FS=0.000;MQ=41.02;MQRankSum=-2.934;QD=1.52;ReadPosRankSum=-1.804;SOR=2.682	GT:AD:DP:GQ:PL	0/1:826,97:923:99:1374,0,32273
1	16893884	rs61771021	G	A	81119.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=10.754;ClippingRankSum=2.264;DB;DP=820;FS=5.113;MQ=39.89;MQRankSum=1.753;QD=26.09;ReadPosRankSum=-0.208;SOR=4.695	GT:AD:DP:GQ:PL	0/1:182,638:820:99:24267,0,4943
1	16894277	rs4661809	G	T	1708.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=-1.672;DB;DP=112;FS=2.391;MQ=32.65;MQRankSum=-0.494;QD=3.49;ReadPosRankSum=0.465;SOR=0.311	GT:AD:DP:GQ:PL	0/1:82,30:112:99:605,0,3052
1	16894289	rs849612	T	C	783.16	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=-0.452;DB;DP=124;FS=3.789;MQ=32.99;MQRankSum=0.063;QD=2.25;ReadPosRankSum=-0.342;SOR=0.060	GT:AD:DP:GQ:PL	0/1:95,29:124:99:648,0,3516
1	16894301	rs4098002	G	T	3722.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=-1.970;DB;DP=122;FS=1.702;MQ=34.23;MQRankSum=0.100;QD=7.21;ReadPosRankSum=-1.960;SOR=1.187	GT:AD:DP:GQ:PL	0/1:89,33:122:99:883,0,3704
1	16894323	rs55870077	C	A	7144.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.069;ClippingRankSum=1.698;DB;DP=144;FS=1.142;MQ=35.84;MQRankSum=-2.872;QD=11.23;ReadPosRankSum=-0.298;SOR=0.939	GT:AD:DP:GQ:PL	0/1:83,61:144:99:1787,0,3045
1	16894376	rs849613	A	G	2046.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.025;ClippingRankSum=-1.251;DB;DP=233;FS=0.000;MQ=36.89;MQRankSum=2.437;QD=3.14;ReadPosRankSum=0.931;SOR=0.902	GT:AD:DP:GQ:PL	0/1:172,61:233:99:1749,0,5840
1	16894612	rs3868821	T	G	4296.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=1.658;DB;DP=160;FS=4.087;MQ=43.89;MQRankSum=-14.643;QD=6.04;ReadPosRankSum=0.378;SOR=0.359	GT:AD:DP:GQ:PL	0/1:114,46:160:99:1131,0,4110
1	16895276	rs3983186	G	A	755.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.107;ClippingRankSum=-0.230;DB;DP=46;FS=2.302;MQ=54.77;MQRankSum=1.898;QD=4.13;ReadPosRankSum=2.191;SOR=1.035	GT:AD:DP:GQ:PL	0/1:39,7:46:99:169,0,1464
1	16895392	rs55831025	AC	A	1238.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;ClippingRankSum=-0.092;DB;DP=86;FS=0.000;MQ=34.53;MQRankSum=0.128;QD=3.56;ReadPosRankSum=1.328;SOR=0.623	GT:AD:DP:GQ:PL	0/1:70,16:86:99:292,0,2092
1	16895634	rs75027498	T	G	12195.92	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.532;ClippingRankSum=0.433;DB;DP=135;FS=31.698;MQ=34.61;MQRankSum=-13.941;QD=20.92;ReadPosRankSum=3.173;SOR=2.297	GT:AD:DP:GQ:PL	0/1:41,94:135:99:2778,0,1264
1	16895800	.	A	G	1516.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=-0.395;DP=54;FS=2.643;MQ=27.71;MQRankSum=-5.394;QD=5.93;ReadPosRankSum=1.646;SOR=0.207	GT:AD:DP:GQ:PL	0/1:34,20:54:99:435,0,811
1	16895875	.	G	T	51.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=1.038;DP=23;FS=0.000;MQ=32.98;MQRankSum=-4.206;QD=0.88;ReadPosRankSum=1.086;SOR=0.062	GT:AD:DP:GQ:PL	0/1:19,4:23:48:48,0,679
1	16899669	.	C	T	1439.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.190;DP=46;FS=8.258;MQ=32.79;MQRankSum=1.298;QD=11.16;ReadPosRankSum=1.554;SOR=1.360	GT:AD:DP:GQ:PL	0/1:32,14:46:99:400,0,873
1	16899903	rs61772300	G	C	686.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=1.562;DB;DP=17;FS=2.833;MQ=51.91;MQRankSum=0.457;QD=11.84;ReadPosRankSum=-0.008;SOR=1.586	GT:AD:DP:GQ:PL	0/1:12,5:17:99:171,0,387
1	16900883	rs688635	T	G	3613.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=6.340;ClippingRankSum=-1.205;DB;DP=264;FS=2.834;MQ=32.72;MQRankSum=0.092;QD=5.15;ReadPosRankSum=1.241;SOR=0.151	GT:AD:DP:GQ:PL	0/0:264,0:264:99:0,791,9138
1	16901247	rs10752419	G	T	3226.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=-0.903;DB;DP=120;FS=14.355;MQ=30.80;MQRankSum=-4.839;QD=8.40;ReadPosRankSum=0.361;SOR=1.953	GT:AD:DP:GQ:PL	0/1:67,53:120:99:1195,0,1884
1	16901259	rs10907243	T	A	2025.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;ClippingRankSum=-0.934;DB;DP=88;FS=5.984;MQ=33.03;MQRankSum=-5.692;QD=6.78;ReadPosRankSum=-2.638;SOR=1.346	GT:AD:DP:GQ:PL	0/1:56,32:88:99:642,0,1712
1	16901539	rs11260802	G	T	3808.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=4.404;ClippingRankSum=-1.572;DB;DP=141;FS=9.502;MQ=46.08;MQRankSum=-13.781;QD=6.88;ReadPosRankSum=-2.846;SOR=0.129	GT:AD:DP:GQ:PL	0/1:91,50:141:99:1759,0,3866
1	16901549	rs10907244	A	G	2862.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=3.662;ClippingRankSum=-0.735;DB;DP=141;FS=7.766;MQ=48.27;MQRankSum=-14.027;QD=5.18;ReadPosRankSum=3.611;SOR=0.163	GT:AD:DP:GQ:PL	0/1:101,40:141:99:1395,0,4109
1	16901627	rs3872316	C	A	3516.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.499;DB;DP=195;FS=5.777;MQ=47.16;MQRankSum=-19.351;QD=4.37;ReadPosRankSum=10.010;SOR=0.348	GT:AD:DP:GQ:PL	0/1:126,69:195:99:1427,0,4613
1	16901668	rs3901679	T	C	1404.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.582;DB;DP=179;FS=3.772;MQ=41.65;MQRankSum=2.868;QD=6.19;ReadPosRankSum=1.002;SOR=1.137	GT:AD:DP:GQ:PL	0/0:179,0:179:99:0,536,6568
1	16901710	rs3901680	C	G	3433.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=4.275;ClippingRankSum=-0.137;DB;DP=163;FS=23.643;MQ=35.30;MQRankSum=-8.162;QD=5.16;ReadPosRankSum=1.993;SOR=2.462	GT:AD:DP:GQ:PL	0/1:103,60:163:99:1511,0,4116
1	16901714	rs138796798	G	A	18703.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;ClippingRankSum=2.321;DB;DP=162;FS=21.527;MQ=35.45;MQRankSum=0.121;QD=27.87;ReadPosRankSum=0.724;SOR=2.109	GT:AD:DP:GQ:PL	0/1:99,63:162:99:2306,0,3420
1	16901757	rs3872317	C	A	3649.92	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.306;DB;DP=189;FS=6.447;MQ=34.93;MQRankSum=-13.547;QD=4.95;ReadPosRankSum=5.149;SOR=1.358	GT:AD:DP:GQ:PL	0/1:117,72:189:99:1619,0,4048
1	16901837	rs3872318	G	A	199.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=-0.975;DB;DP=119;FS=6.377;MQ=34.51;MQRankSum=-8.492;QD=0.77;ReadPosRankSum=0.079;SOR=1.621	GT:AD:DP:GQ:PL	0/1:98,21:119:99:153,0,3183
1	16902661	rs2985115	C	A	2513.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=-0.490;DB;DP=76;FS=7.115;MQ=41.26;MQRankSum=-11.866;QD=11.64;ReadPosRankSum=-1.330;SOR=0.118	GT:AD:DP:GQ:PL	0/1:46,30:76:99:708,0,1686
1	16902727	rs61772338	G	C	4899.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.895;ClippingRankSum=1.268;DB;DP=146;FS=3.704;MQ=34.98;MQRankSum=-2.439;QD=10.25;ReadPosRankSum=3.405;SOR=1.471	GT:AD:DP:GQ:PL	0/1:96,50:146:99:1536,0,2951
1	16902750	.	T	C	1330.16	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.341;ClippingRankSum=-0.045;DP=156;FS=6.594;MQ=33.71;MQRankSum=0.349;QD=3.77;ReadPosRankSum=0.044;SOR=2.292	GT:AD:DP:GQ:PL	0/1:132,24:156:99:407,0,5058
1	16902780	rs199930813	C	A	752.92	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;ClippingRankSum=-0.420;DB;DP=204;FS=6.448;MQ=33.28;MQRankSum=-2.475;QD=1.13;ReadPosRankSum=-1.303;SOR=4.316	GT:AD:DP:GQ:PL	0/1:182,22:204:99:358,0,7853
1	16902784	.	G	T	776.92	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.354;DP=220;FS=8.646;MQ=33.66;MQRankSum=-2.599;QD=1.12;ReadPosRankSum=-1.097;SOR=4.592	GT:AD:DP:GQ:PL	0/1:197,23:220:99:369,0,8141
1	16902804	rs77427788	C	A	1981.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=-0.862;DB;DP=232;FS=3.456;MQ=35.73;MQRankSum=1.993;QD=2.47;ReadPosRankSum=-0.292;SOR=0.426	GT:AD:DP:GQ:PL	0/1:196,36:232:99:634,0,7068
1	16902823	rs80271292	G	C	3701.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=5.941;ClippingRankSum=1.134;DB;DP=245;FS=21.851;MQ=37.00;MQRankSum=-4.998;QD=4.30;ReadPosRankSum=0.028;SOR=2.896	GT:AD:DP:GQ:PL	0/1:184,61:245:99:1535,0,6495
1	16902884	rs74630591	T	C	2719.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;ClippingRankSum=1.089;DB;DP=225;FS=0.735;MQ=38.86;MQRankSum=-6.029;QD=3.26;ReadPosRankSum=2.654;SOR=0.824	GT:AD:DP:GQ:PL	0/1:185,40:225:99:786,0,7568
1	16902894	rs61772339	A	G	16727.92	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.398;ClippingRankSum=-0.657;DB;DP=206;FS=33.997;MQ=38.54;MQRankSum=-18.620;QD=22.98;ReadPosRankSum=0.743;SOR=1.932	GT:AD:DP:GQ:PL	0/1:74,132:206:99:4316,0,2490
1	16902943	rs3896429	T	C	687.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.655;DB;DP=201;FS=3.578;MQ=32.97;MQRankSum=-3.133;QD=3.82;ReadPosRankSum=0.368;SOR=1.182	GT:AD:DP:GQ:PL	0/0:201,0:201:99:0,603,6915
1	16903663	rs684193	C	T	1166.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=-0.976;DB;DP=68;FS=1.829;MQ=38.73;MQRankSum=-3.019;QD=5.48;ReadPosRankSum=-5.636;SOR=0.266	GT:AD:DP:GQ:PL	0/1:57,11:68:99:448,0,2308
1	16903674	rs613213	C	T	3287.92	SNP_MappingQuality;SNP_ReadPosRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134;ClippingRankSum=0.699;DB;DP=80;FS=3.789;MQ=39.81;MQRankSum=-4.812;QD=11.87;ReadPosRankSum=-8.124;SOR=0.311	GT:AD:DP:GQ:PL	0/1:56,24:80:99:878,0,2317
1	16903683	rs684166	T	A	4898.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=-0.061;DB;DP=89;FS=2.838;MQ=44.01;MQRankSum=-0.614;QD=15.21;ReadPosRankSum=-6.633;SOR=0.412	GT:AD:DP:GQ:PL	0/1:57,32:89:99:1138,0,2364
1	16903686	.	G	C	1439.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.455;ClippingRankSum=-1.222;DP=102;FS=3.623;MQ=46.60;MQRankSum=3.716;QD=5.64;ReadPosRankSum=3.617;SOR=0.343	GT:AD:DP:GQ:PL	0/0:102,0:102:99:0,307,4133
1	16903730	rs4989436	T	C	1359.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.489;ClippingRankSum=0.150;DB;DP=191;FS=0.000;MQ=53.81;MQRankSum=-10.196;QD=2.89;ReadPosRankSum=-2.349;SOR=0.529	GT:AD:DP:GQ:PL	0/1:164,27:191:99:497,0,6216
1	16903912	rs61772344	T	A	9036.16	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;ClippingRankSum=-0.829;DB;DP=152;FS=119.325;MQ=37.17;MQRankSum=-7.325;QD=21.88;ReadPosRankSum=0.415;SOR=6.582	GT:AD:DP:GQ:PL	0/1:97,55:152:99:1822,0,3459
1	16904073	rs200108639	C	A	3062.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.668;DB;DP=95;FS=2.318;MQ=38.73;MQRankSum=-3.281;QD=12.60;ReadPosRankSum=0.440;SOR=0.246	GT:AD:DP:GQ:PL	0/1:58,37:95:99:1058,0,1917
1	16905641	.	C	G	81.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.494;DP=37;FS=7.594;MQ=33.49;MQRankSum=-3.624;QD=1.10;ReadPosRankSum=-0.540;SOR=2.093	GT:AD:DP:GQ:PL	0/1:31,6:37:73:73,0,1087
1	16905718	rs3738661	A	C	2803.92	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=-0.829;DB;DP=86;FS=64.241;MQ=34.13;MQRankSum=-4.297;QD=8.85;ReadPosRankSum=0.108;SOR=3.592	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1266,0,1391
1	16905788	rs145220846	A	G	1181.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=-0.683;DB;DP=55;FS=53.398;MQ=33.22;MQRankSum=0.228;QD=4.82;ReadPosRankSum=-6.491;SOR=3.794	GT:AD:DP:GQ:PL	0/1:39,16:55:99:554,0,1569
1	16905789	rs141419018	T	C	1181.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;ClippingRankSum=-0.656;DB;DP=54;FS=53.224;MQ=33.25;MQRankSum=-0.247;QD=4.88;ReadPosRankSum=-6.609;SOR=3.763	GT:AD:DP:GQ:PL	0/1:38,16:54:99:554,0,1569
1	16905800	rs199652869	G	A	466.16	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=-1.255;DB;DP=46;FS=66.154;MQ=33.33;MQRankSum=-1.806;QD=3.64;ReadPosRankSum=-6.123;SOR=6.410	GT:AD:DP:GQ:PL	0/1:33,13:46:99:359,0,1021
1	16905803	rs202216983	G	C	75.13	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=-0.166;DB;DP=45;FS=36.209;MQ=33.24;MQRankSum=-0.759;QD=1.67;ReadPosRankSum=-5.044;SOR=5.239	GT:AD:DP:GQ:PL	0/1:38,7:45:99:106,0,1489
1	16905842	rs200194071	A	G	1484.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.500;ClippingRankSum=1.342;DB;DP=25;FS=28.982;MQ=35.00;MQRankSum=2.651;QD=15.30;ReadPosRankSum=-0.558;SOR=0.993	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,900
1	16905869	rs145182526	G	A	593.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=-1.057;DB;DP=22;FS=23.042;MQ=35.58;MQRankSum=4.072;QD=6.75;ReadPosRankSum=2.026;SOR=3.721	GT:AD:DP:GQ:PL	0/1:17,5:22:99:156,0,499
1	16905978	rs2021196	C	T	987.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=-1.251;DB;DP=13;FS=6.541;MQ=43.60;MQRankSum=-4.843;QD=12.19;ReadPosRankSum=1.451;SOR=0.078	GT:AD:DP:GQ:PL	0/1:12,1:13:6:6,0,469
1	16907107	rs77432139	A	C	7454.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.474;ClippingRankSum=0.122;DB;DP=225;FS=0.000;MQ=47.02;MQRankSum=-3.790;QD=8.79;ReadPosRankSum=0.007;SOR=0.286	GT:AD:DP:GQ:PL	0/1:154,71:225:99:2082,0,5965
1	16907110	rs77700260	T	C	26694.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=1.546;DB;DP=243;FS=0.000;MQ=48.11;MQRankSum=0.852;QD=30.61;ReadPosRankSum=-2.492;SOR=0.096	GT:AD:DP:GQ:PL	0/1:61,182:243:99:7646,0,2327
1	16907124	rs615115	A	C	29336.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=1.682;DB;DP=286;FS=0.000;MQ=52.33;MQRankSum=1.098;QD=29.02;ReadPosRankSum=1.636;SOR=0.144	GT:AD:DP:GQ:PL	0/1:68,218:286:99:8819,0,2510
1	16907164	rs201839566	C	T	162.13	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=2.804;ClippingRankSum=-0.141;DB;DP=474;FS=0.000;MQ=55.10;MQRankSum=-4.214;QD=0.36;ReadPosRankSum=1.304;SOR=0.799	GT:AD:DP:GQ:PL	0/0:474,0:474:99:0,1423,20276
1	16907165	rs74548788	G	A	4091.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=7.851;ClippingRankSum=-0.400;DB;DP=475;FS=4.378;MQ=54.99;MQRankSum=-17.496;QD=2.50;ReadPosRankSum=1.788;SOR=1.585	GT:AD:DP:GQ:PL	0/1:407,68:475:99:1339,0,16004
1	16907328	rs78540200	G	T	56325.92	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.312;ClippingRankSum=1.430;DB;DP=651;FS=0.000;MQ=36.00;MQRankSum=-14.287;QD=24.04;ReadPosRankSum=-0.118;SOR=0.633	GT:AD:DP:GQ:PL	0/1:124,527:651:99:16885,0,2793
1	16907466	.	G	A	9442.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;ClippingRankSum=-0.953;DP=310;FS=2.647;MQ=33.07;MQRankSum=-2.119;QD=9.45;ReadPosRankSum=1.138;SOR=2.608	GT:AD:DP:GQ:PL	0/1:192,118:310:99:3369,0,5981
1	16907547	rs142893461	C	G	7222.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;ClippingRankSum=0.293;DB;DP=198;FS=9.932;MQ=31.49;MQRankSum=-5.372;QD=11.04;ReadPosRankSum=1.348;SOR=2.009	GT:AD:DP:GQ:PL	0/1:102,96:198:99:2602,0,3046
1	16907766	rs115167116	A	G	14405.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=2.360;DB;DP=157;FS=5.811;MQ=34.07;MQRankSum=-7.218;QD=30.98;ReadPosRankSum=-1.670;SOR=3.393	GT:AD:DP:GQ:PL	0/1:45,112:157:99:3611,0,1373
1	16907854	rs9729861	T	A	25818.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=-0.000;DB;DP=469;FS=0.820;MQ=41.24;MQRankSum=15.319;QD=16.23;ReadPosRankSum=1.703;SOR=0.563	GT:AD:DP:GQ:PL	0/1:261,208:469:99:7860,0,10591
1	16907855	rs77685848	G	A	9831.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;ClippingRankSum=-0.373;DB;DP=473;FS=10.333;MQ=41.18;MQRankSum=-20.135;QD=6.13;ReadPosRankSum=-0.872;SOR=2.046	GT:AD:DP:GQ:PL	0/1:325,148:473:99:3724,0,13123
1	16907871	rs9728933	C	T	27439.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.696;ClippingRankSum=0.191;DB;DP=508;FS=2.594;MQ=41.11;MQRankSum=15.765;QD=16.12;ReadPosRankSum=3.029;SOR=0.470	GT:AD:DP:GQ:PL	0/1:273,235:508:99:8869,0,10790
1	16907891	rs59625189	T	C	547.16	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.120;ClippingRankSum=0.424;DB;DP=511;FS=15.662;MQ=40.55;MQRankSum=-11.090;QD=0.56;ReadPosRankSum=3.146;SOR=4.281	GT:AD:DP:GQ:PL	0/1:458,53:511:99:241,0,18744
1	16907898	rs9729869	T	C	7839.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.332;ClippingRankSum=-0.460;DB;DP=509;FS=40.998;MQ=40.28;MQRankSum=-19.939;QD=4.68;ReadPosRankSum=4.235;SOR=5.537	GT:AD:DP:GQ:PL	0/1:388,121:509:99:3166,0,14392
1	16907947	rs16849894	C	T	1603.92	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=8.200;ClippingRankSum=-0.093;DB;DP=448;FS=24.861;MQ=37.31;MQRankSum=-11.472;QD=1.07;ReadPosRankSum=4.387;SOR=3.827	GT:AD:DP:GQ:PL	0/1:376,72:448:99:1099,0,12947
1	16908027	rs1020239	C	A	352.16	SNP_LowQualityDepth;SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=-0.941;DB;DP=399;FS=10.554;MQ=51.80;MQRankSum=-16.042;QD=0.42;ReadPosRankSum=-2.795;SOR=0.155	GT:AD:DP:GQ:PL	0/1:356,43:399:99:321,0,13395
1	16908080	rs2119896	G	A	6396.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=3.597;ClippingRankSum=0.770;DB;DP=420;FS=10.826;MQ=53.94;MQRankSum=-26.046;QD=4.43;ReadPosRankSum=2.760;SOR=2.324	GT:AD:DP:GQ:PL	0/1:323,97:420:99:2254,0,12461
1	16908115	rs647061	A	G	18212.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.389;ClippingRankSum=1.472;DB;DP=409;FS=0.000;MQ=49.31;MQRankSum=14.205;QD=13.59;ReadPosRankSum=-1.928;SOR=0.492	GT:AD:DP:GQ:PL	0/1:239,170:409:99:5966,0,8044
1	16908867	rs643850	C	A	1437.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=-0.301;DB;DP=23;FS=3.544;MQ=47.30;MQRankSum=3.862;QD=14.98;ReadPosRankSum=-1.799;SOR=1.505	GT:AD:DP:GQ:PL	0/1:14,9:23:99:273,0,412
1	16908914	rs643471	G	A	3881.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=-1.135;DB;DP=80;FS=11.895;MQ=51.77;MQRankSum=0.667;QD=12.77;ReadPosRankSum=0.239;SOR=0.103	GT:AD:DP:GQ:PL	0/1:44,36:80:99:1257,0,1547
1	16908989	rs144184209	C	T	1627.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=-0.459;DB;DP=87;FS=12.158;MQ=48.04;MQRankSum=-0.870;QD=5.43;ReadPosRankSum=-0.449;SOR=0.088	GT:AD:DP:GQ:PL	0/1:61,26:87:99:781,0,2164
1	16909002	.	TG	T	722.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.718;DP=65;FS=11.097;MQ=46.45;MQRankSum=0.280;QD=4.25;ReadPosRankSum=1.060;SOR=2.756	GT:AD:DP:GQ:PL	0/0:60,5:65:28:0,28,2130
1	16909052	rs140548913	C	T	1263.76	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=-1.001;DB;DP=5;FS=27.993;MQ=36.34;MQRankSum=1.692;QD=26.54;ReadPosRankSum=-0.863;SOR=7.111	GT:AD:DP:GQ:PL	0/1:1,4:5:17:135,0,17
1	16909100	rs143269469	G	C	1577.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.165;ClippingRankSum=1.491;DB;DP=36;FS=12.610;MQ=36.71;MQRankSum=1.711;QD=9.99;ReadPosRankSum=-0.982;SOR=3.131	GT:AD:DP:GQ:PL	0/1:20,16:36:99:527,0,677
1	16909129	rs199798572	T	C	5441.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.384;DB;DP=59;FS=50.833;MQ=36.76;MQRankSum=2.322;QD=23.16;ReadPosRankSum=-1.042;SOR=5.481	GT:AD:DP:GQ:PL	0/1:21,38:59:99:1315,0,642
1	16909208	rs200714079	C	G	43.13	SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias	AC=0;AF=0.00;AN=2;BaseQRankSum=3.237;ClippingRankSum=-1.741;DB;DP=75;FS=129.324;MQ=36.87;MQRankSum=-5.159;QD=0.62;ReadPosRankSum=0.791;SOR=5.130	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,225,2989
1	16909220	rs201826071	T	C	960.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=-0.169;DB;DP=71;FS=22.664;MQ=36.86;MQRankSum=0.917;QD=4.45;ReadPosRankSum=-0.963;SOR=4.016	GT:AD:DP:GQ:PL	0/1:59,12:71:99:269,0,2104
1	16909304	.	C	T	1201.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.464;DP=32;FS=16.579;MQ=36.85;MQRankSum=0.687;QD=12.14;ReadPosRankSum=0.018;SOR=3.767	GT:AD:DP:GQ:PL	0/1:22,10:32:99:307,0,820
1	16909306	rs200655394	T	C	1563.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412;ClippingRankSum=0.073;DB;DP=29;FS=29.359;MQ=36.84;MQRankSum=2.135;QD=16.82;ReadPosRankSum=-0.104;SOR=5.192	GT:AD:DP:GQ:PL	0/1:10,19:29:99:593,0,392
1	16909406	rs139627918	T	G	43.68	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.940;ClippingRankSum=-0.017;DB;DP=19;FS=12.212;MQ=25.22;MQRankSum=0.530;QD=1.75;ReadPosRankSum=-1.556;SOR=0.018	GT:AD:DP:GQ:PL	0/0:18,1:19:20:0,20,488
1	16909963	rs4112505	G	A	1276.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=-0.258;DB;DP=100;FS=0.000;MQ=37.01;MQRankSum=3.719;QD=2.74;ReadPosRankSum=-0.364;SOR=1.175	GT:AD:DP:GQ:PL	0/1:81,19:100:99:415,0,2871
1	16910064	rs2023254	A	G	10680.92	SNP_MQRankSumLow;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=3.996;ClippingRankSum=-0.406;DB;DP=145;FS=69.757;MQ=44.10;MQRankSum=-16.922;QD=20.34;ReadPosRankSum=0.950;SOR=8.883	GT:AD:DP:GQ:PL	0/1:33,112:145:99:4085,0,886
1	16910302	rs3926652	C	T	542.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.664;DB;DP=93;FS=13.833;MQ=37.78;MQRankSum=1.053;QD=4.71;ReadPosRankSum=1.286;SOR=0.009	GT:AD:DP:GQ:PL	0/0:93,0:93:99:0,279,3819
1	16910318	rs71243982	G	A	2049.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.445;DB;DP=79;FS=4.737;MQ=36.29;MQRankSum=2.607;QD=6.77;ReadPosRankSum=0.073;SOR=1.666	GT:AD:DP:GQ:PL	0/1:48,31:79:99:978,0,1540
1	16910350	rs3926653	C	A	817.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.828;DB;DP=58;FS=0.000;MQ=33.40;MQRankSum=0.969;QD=3.37;ReadPosRankSum=-0.793;SOR=0.632	GT:AD:DP:GQ:PL	0/1:42,16:58:99:382,0,1399
1	16911937	.	C	G	241.04	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=-1.085;DP=44;FS=55.666;MQ=32.52;MQRankSum=-4.607;QD=1.69;ReadPosRankSum=0.250;SOR=6.161	GT:AD:DP:GQ:PL	0/1:34,10:44:99:176,0,1124
1	16911943	rs200170371	T	A	1935.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=-1.149;DB;DP=46;FS=2.154;MQ=32.64;MQRankSum=3.678;QD=12.18;ReadPosRankSum=-2.231;SOR=0.516	GT:AD:DP:GQ:PL	0/1:36,10:46:99:306,0,1550
1	16911946	rs200888436	G	A	1970.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=-0.901;DB;DP=49;FS=2.069;MQ=32.89;MQRankSum=2.965;QD=11.73;ReadPosRankSum=-2.368;SOR=0.508	GT:AD:DP:GQ:PL	0/1:38,11:49:99:312,0,1547
1	16912014	rs143097321	A	C	5029.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=-1.048;DB;DP=107;FS=48.583;MQ=34.34;MQRankSum=0.713;QD=13.97;ReadPosRankSum=-2.505;SOR=1.932	GT:AD:DP:GQ:PL	0/1:56,51:107:99:1715,0,1844
1	16912015	rs58689366	G	A	3101.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;ClippingRankSum=-0.489;DB;DP=107;FS=4.475;MQ=34.46;MQRankSum=4.972;QD=8.55;ReadPosRankSum=-1.456;SOR=0.931	GT:AD:DP:GQ:PL	0/1:71,36:107:99:1014,0,2646
1	16912063	rs200576956	T	A	192.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.161;DB;DP=115;FS=6.153;MQ=35.36;MQRankSum=-0.358;QD=1.42;ReadPosRankSum=0.006;SOR=0.412	GT:AD:DP:GQ:PL	0/0:115,0:115:99:0,345,4378
1	16912133	rs200640783	G	A	115.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.835;ClippingRankSum=-0.628;DB;DP=71;FS=5.472;MQ=34.43;MQRankSum=-1.228;QD=2.06;ReadPosRankSum=2.366;SOR=0.541	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,213,2576
1	16912299	rs61773587	A	G	1634.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.059;DB;DP=89;FS=2.381;MQ=50.06;MQRankSum=-12.695;QD=5.47;ReadPosRankSum=2.987;SOR=1.560	GT:AD:DP:GQ:PL	0/1:67,22:89:99:418,0,2574
1	16912315	rs28593580	T	A	728.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=3.391;ClippingRankSum=-1.074;DB;DP=72;FS=0.000;MQ=48.12;MQRankSum=4.027;QD=4.26;ReadPosRankSum=0.494;SOR=0.409	GT:AD:DP:GQ:PL	0/0:72,0:72:99:0,217,2804
1	16912330	rs4336845	C	T	5857.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.824;ClippingRankSum=-0.638;DB;DP=65;FS=0.000;MQ=45.77;MQRankSum=-0.096;QD=27.50;ReadPosRankSum=-1.728;SOR=1.619	GT:AD:DP:GQ:PL	0/1:26,39:65:99:1211,0,850
1	16913416	rs76915367	G	C	1848.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.102;ClippingRankSum=-0.264;DB;DP=23;FS=12.648;MQ=47.83;MQRankSum=1.517;QD=12.00;ReadPosRankSum=-0.108;SOR=3.156	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,905
1	16913852	rs200046304	C	G	1047.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=1.294;DB;DP=44;FS=40.148;MQ=30.67;MQRankSum=-2.447;QD=5.95;ReadPosRankSum=1.988;SOR=1.041	GT:AD:DP:GQ:PL	0/1:33,11:44:99:220,0,948
1	16914117	rs79378595	C	T	3564.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.323;ClippingRankSum=0.700;DB;DP=208;FS=6.612;MQ=37.13;MQRankSum=-5.694;QD=3.85;ReadPosRankSum=-0.405;SOR=1.943	GT:AD:DP:GQ:PL	0/1:146,62:208:99:1796,0,4795
1	16914160	rs2023215	G	A	14861.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.186;DB;DP=189;FS=2.670;MQ=42.77;MQRankSum=-20.773;QD=16.89;ReadPosRankSum=0.043;SOR=1.024	GT:AD:DP:GQ:PL	0/1:75,114:189:99:4462,0,2807
1	16914168	rs2147033	C	G	14251.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=4.139;ClippingRankSum=-2.007;DB;DP=190;FS=0.000;MQ=43.96;MQRankSum=-21.962;QD=17.09;ReadPosRankSum=1.846;SOR=0.678	GT:AD:DP:GQ:PL	0/1:79,111:190:99:4543,0,2990
1	16914196	rs61773595	T	C	446.13	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=1.487;ClippingRankSum=-0.494;DB;DP=243;FS=26.999;MQ=42.79;MQRankSum=-8.381;QD=1.00;ReadPosRankSum=-1.197;SOR=1.701	GT:AD:DP:GQ:PL	0/0:223,20:243:56:0,56,7942
1	16914252	rs1020241	C	T	13374.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.396;ClippingRankSum=-2.729;DB;DP=308;FS=1.184;MQ=37.33;MQRankSum=-3.518;QD=9.85;ReadPosRankSum=-2.675;SOR=0.833	GT:AD:DP:GQ:PL	0/1:153,155:308:99:4683,0,4604
1	16914306	rs1967910	A	G	21902.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.135;ClippingRankSum=-0.948;DB;DP=368;FS=0.000;MQ=41.97;MQRankSum=1.857;QD=14.83;ReadPosRankSum=4.568;SOR=0.747	GT:AD:DP:GQ:PL	0/1:146,222:368:99:7487,0,4218
1	16914339	rs66981007	G	C	33.13	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.746;DB;DP=334;FS=5.081;MQ=46.59;MQRankSum=-12.313;QD=0.10;ReadPosRankSum=2.971;SOR=2.379	GT:AD:DP:GQ:PL	0/1:302,32:334:64:64,0,10804
1	16914393	rs71274562	G	T	3019.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.969;DB;DP=169;FS=0.000;MQ=49.29;MQRankSum=-12.788;QD=4.10;ReadPosRankSum=-3.569;SOR=0.796	GT:AD:DP:GQ:PL	0/1:128,41:169:99:911,0,4690
1	16914396	rs2023276	C	T	10061.92	SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811;ClippingRankSum=-1.252;DB;DP=155;FS=3.562;MQ=49.54;MQRankSum=-22.295;QD=14.58;ReadPosRankSum=-8.787;SOR=1.342	GT:AD:DP:GQ:PL	0/1:67,88:155:99:3296,0,2552
1	16914415	rs4233549	A	G	4075.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=-0.130;DB;DP=102;FS=6.950;MQ=52.40;MQRankSum=-16.013;QD=8.40;ReadPosRankSum=-7.928;SOR=1.908	GT:AD:DP:GQ:PL	0/1:64,38:102:99:1438,0,2551
1	16915357	rs199859875	C	T	1025.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=1.148;DB;DP=18;FS=57.073;MQ=29.07;MQRankSum=-2.395;QD=15.54;ReadPosRankSum=0.545;SOR=7.142	GT:AD:DP:GQ:PL	0/1:6,12:18:99:358,0,155
1	16915405	rs201355992	G	C	864.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.695;ClippingRankSum=1.071;DB;DP=51;FS=33.693;MQ=28.91;MQRankSum=-4.532;QD=6.31;ReadPosRankSum=0.926;SOR=3.612	GT:AD:DP:GQ:PL	0/1:30,21:51:99:487,0,790
1	16915434	rs202129231	T	C	2674.92	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.128;DB;DP=70;FS=142.104;MQ=27.78;MQRankSum=-12.423;QD=10.13;ReadPosRankSum=0.685;SOR=6.486	GT:AD:DP:GQ:PL	0/1:24,46:70:99:1078,0,553
1	16915466	rs200264463	T	C	598.92	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.406;ClippingRankSum=0.399;DB;DP=93;FS=13.238;MQ=25.75;MQRankSum=-6.480;QD=1.72;ReadPosRankSum=0.320;SOR=1.882	GT:AD:DP:GQ:PL	0/1:71,22:93:99:320,0,1673
1	16915513	.	C	G	1449.16	SNP_MappingQuality;SNP_StrandBias	AC=0;AF=0.00;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.534;DP=95;FS=242.550;MQ=23.79;MQRankSum=7.716;QD=5.08;ReadPosRankSum=-1.580;SOR=0.291	GT:AD:DP:GQ:PL	0/0:95,0:95:99:0,284,2694
1	16915525	rs201237274	T	C	164.36	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.135;ClippingRankSum=0.427;DB;DP=91;FS=27.723;MQ=23.50;MQRankSum=-1.999;QD=0.59;ReadPosRankSum=0.127;SOR=4.225	GT:AD:DP:GQ:PL	0/1:79,12:91:38:38,0,1820
1	16915570	rs71246511	C	T	126.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.385;DB;DP=54;FS=5.572;MQ=23.83;MQRankSum=-0.222;QD=0.68;ReadPosRankSum=0.804;SOR=1.570	GT:AD:DP:GQ:PL	0/1:43,11:54:99:120,0,1074
1	16915609	rs201503702	C	T	889.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;ClippingRankSum=0.160;DB;DP=23;FS=31.856;MQ=25.58;MQRankSum=-0.072;QD=8.81;ReadPosRankSum=-1.067;SOR=3.890	GT:AD:DP:GQ:PL	0/1:10,13:23:99:277,0,362
1	16915611	rs199620792	T	C	288.27	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;ClippingRankSum=-1.002;DB;DP=22;FS=20.081;MQ=25.34;MQRankSum=-6.039;QD=3.00;ReadPosRankSum=-0.114;SOR=4.183	GT:AD:DP:GQ:PL	0/1:19,3:22:9:9,0,765
1	16916358	rs3981774	G	C	7177.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.287;ClippingRankSum=-0.280;DB;DP=64;FS=28.862;MQ=41.34;MQRankSum=-8.909;QD=30.67;ReadPosRankSum=0.111;SOR=1.939	GT:AD:DP:GQ:PL	0/0:64,0:64:99:0,193,2717
1	16916515	rs61773622	G	A	774.92	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;ClippingRankSum=-0.029;DB;DP=123;FS=30.374;MQ=39.72;MQRankSum=-0.878;QD=1.63;ReadPosRankSum=2.048;SOR=3.625	GT:AD:DP:GQ:PL	0/1:105,18:123:99:383,0,3988
1	16916528	rs202064781	G	T	864.92	SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=5.018;ClippingRankSum=1.408;DB;DP=104;FS=71.333;MQ=41.79;MQRankSum=-3.681;QD=2.05;ReadPosRankSum=-1.833;SOR=6.478	GT:AD:DP:GQ:PL	0/1:91,13:104:99:237,0,3537
1	16916569	rs1855754	A	G	1777.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=-0.420;DB;DP=74;FS=43.286;MQ=48.43;MQRankSum=-11.469;QD=5.61;ReadPosRankSum=-4.776;SOR=0.079	GT:AD:DP:GQ:PL	0/1:47,27:74:99:696,0,1730
1	16916603	rs11583443	C	A	12101.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.480;DB;DP=92;FS=15.180;MQ=53.40;MQRankSum=-6.978;QD=30.48;ReadPosRankSum=0.342;SOR=2.584	GT:AD:DP:GQ:PL	0/1:40,52:92:99:1514,0,1451
1	16918255	rs199671438	A	C	458.17	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.825;ClippingRankSum=1.517;DB;DP=171;FS=0.000;MQ=36.88;MQRankSum=0.235;QD=1.61;ReadPosRankSum=3.145;SOR=2.504	GT:AD:DP:GQ:PL	0/0:158,13:171:20:0,20,5723
1	16918424	rs9730077	G	C	3371.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.813;ClippingRankSum=-0.394;DB;DP=329;FS=6.426;MQ=54.47;MQRankSum=-17.247;QD=2.62;ReadPosRankSum=-0.086;SOR=0.987	GT:AD:DP:GQ:PL	0/1:290,39:329:99:410,0,11355
1	16918454	rs9730079	G	A	817.92	SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.289;ClippingRankSum=0.173;DB;DP=267;FS=12.540;MQ=55.46;MQRankSum=-14.504;QD=0.75;ReadPosRankSum=-1.511;SOR=1.094	GT:AD:DP:GQ:PL	0/1:243,24:267:99:250,0,10407
1	16918457	rs9730080	G	C	743.92	SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;ClippingRankSum=-0.337;DB;DP=271;FS=13.965;MQ=55.42;MQRankSum=-13.901;QD=0.69;ReadPosRankSum=-1.020;SOR=1.082	GT:AD:DP:GQ:PL	0/1:248,23:271:99:217,0,10886
1	16918465	rs3897296	A	G	1427.92	SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.167;DB;DP=258;FS=9.116;MQ=55.24;MQRankSum=-14.857;QD=1.39;ReadPosRankSum=-2.953;SOR=0.188	GT:AD:DP:GQ:PL	0/1:231,27:258:99:393,0,9348
1	16918502	rs3925698	A	G	12904.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=-0.865;DB;DP=209;FS=2.517;MQ=51.40;MQRankSum=-18.345;QD=17.63;ReadPosRankSum=1.100;SOR=0.495	GT:AD:DP:GQ:PL	0/1:83,126:209:99:4410,0,3007
1	16918611	rs4141869	A	C	9533.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.276;ClippingRankSum=-0.915;DB;DP=168;FS=0.914;MQ=36.14;MQRankSum=-2.124;QD=17.15;ReadPosRankSum=-1.988;SOR=0.610	GT:AD:DP:GQ:PL	0/1:85,83:168:99:2676,0,2982
1	16918717	rs3872321	C	T	4556.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=-0.070;DB;DP=81;FS=2.171;MQ=43.95;MQRankSum=-0.868;QD=16.22;ReadPosRankSum=-1.020;SOR=0.859	GT:AD:DP:GQ:PL	0/1:33,48:81:99:1940,0,1250
1	16918734	rs3928093	G	C	4135.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=-0.641;DB;DP=80;FS=2.785;MQ=45.66;MQRankSum=-0.134;QD=15.09;ReadPosRankSum=0.618;SOR=0.878	GT:AD:DP:GQ:PL	0/1:35,45:80:99:1758,0,1338
1	16918888	rs3863785	C	G	919.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=-0.373;DB;DP=18;FS=2.423;MQ=34.26;MQRankSum=-5.423;QD=11.64;ReadPosRankSum=-0.452;SOR=0.368	GT:AD:DP:GQ:PL	0/1:10,8:18:99:249,0,352
1	16918895	rs3962486	C	T	176.93	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.122;ClippingRankSum=-0.578;DB;DP=16;FS=6.178;MQ=36.69;MQRankSum=-2.438;QD=2.13;ReadPosRankSum=-0.784;SOR=0.151	GT:AD:DP:GQ:PL	0/1:12,4:16:95:95,0,479
1	16918973	rs3851916	C	A	571.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.277;ClippingRankSum=-0.375;DB;DP=19;FS=16.357;MQ=50.63;MQRankSum=2.086;QD=6.88;ReadPosRankSum=0.485;SOR=0.012	GT:AD:DP:GQ:PL	0/0:19,0:19:57:0,57,767
1	16920002	rs3851917	G	C	52.12	PASS	AC=0;AF=0.00;AN=0;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=4;FS=4.771;MQ=48.50;MQRankSum=1.026;QD=17.37;ReadPosRankSum=-1.026;SOR=2.209	GT	./.
1	16921146	rs1759165	T	C	112.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-1.371;DB;DP=4;FS=0.000;MQ=59.42;MQRankSum=0.718;QD=11.24;ReadPosRankSum=2.154;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,3:4:33:118,0,33
1	16935283	rs1762922	T	C	197.55	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.648;ClippingRankSum=-0.530;DB;DP=4;FS=8.675;MQ=57.95;MQRankSum=0.059;QD=17.96;ReadPosRankSum=1.355;SOR=1.071	GT:AD:DP:GQ:PL	0/0:4,0:4:12:0,12,177
1	16939709	rs71642030	C	A	47.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.198;DB;DP=4;FS=0.000;MQ=60.00;MQRankSum=-0.198;QD=11.89;ReadPosRankSum=-0.922;SOR=1.802	GT:AD:DP:GQ:PL	0/1:2,2:4:76:76,0,78
1	16939717	rs9329437	G	C	186.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=7.782;MQ=60.00;MQRankSum=0.736;QD=31.09;ReadPosRankSum=0.736;SOR=3.590	GT:AD:DP:GQ:PL	0/1:1,2:3:35:81,0,35
1	16939746	rs1765565	A	C	128.56	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.720;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=-0.720;QD=25.71;ReadPosRankSum=-0.720;SOR=1.329	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,44
1	16950261	rs11260845	G	C	308.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.756;ClippingRankSum=2.102;DB;DP=90;FS=1.852;MQ=52.59;MQRankSum=-0.415;QD=3.46;ReadPosRankSum=-0.058;SOR=0.243	GT:AD:DP:GQ:PL	0/0:90,0:90:99:0,274,3819
1	16950346	rs9663015	A	C	6356.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.693;ClippingRankSum=-0.856;DB;DP=153;FS=1.170;MQ=51.37;MQRankSum=1.786;QD=11.60;ReadPosRankSum=-0.515;SOR=0.614	GT:AD:DP:GQ:PL	0/1:115,38:153:99:1100,0,4149
1	16950509	rs74650164	G	C	765.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=-0.454;DB;DP=82;FS=0.000;MQ=53.47;MQRankSum=-9.199;QD=4.01;ReadPosRankSum=1.090;SOR=0.751	GT:AD:DP:GQ:PL	0/1:69,13:82:99:333,0,5685
1	16950511	rs78239437	G	C	765.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=1.385;DB;DP=80;FS=0.000;MQ=53.76;MQRankSum=-9.143;QD=4.14;ReadPosRankSum=1.445;SOR=0.716	GT:AD:DP:GQ:PL	0/1:67,13:80:99:333,0,5685
1	16953672	rs3738597	C	T	1631.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=-0.398;DB;DP=222;FS=0.000;MQ=50.47;MQRankSum=2.115;QD=2.95;ReadPosRankSum=-0.457;SOR=0.800	GT:AD:DP:GQ:PL	0/1:193,29:222:99:583,0,7545
1	16953827	rs113222514	G	GC	627.12	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=1.872;ClippingRankSum=0.714;DB;DP=222;FS=0.000;MQ=54.46;MQRankSum=-10.679;QD=1.02;ReadPosRankSum=0.040;SOR=0.596	GT:AD:DP:GQ:PL	0/0:222,0:222:99:0,668,7641
1	16953881	rs9329439	C	G	921.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.494;ClippingRankSum=1.802;DB;DP=203;FS=2.682;MQ=54.34;MQRankSum=-3.731;QD=4.87;ReadPosRankSum=1.583;SOR=0.300	GT:AD:DP:GQ:PL	0/0:203,0:203:99:0,609,8480
1	16953889	rs1628369	G	C	2003.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.965;ClippingRankSum=-0.439;DB;DP=187;FS=1.799;MQ=53.00;MQRankSum=-3.658;QD=4.16;ReadPosRankSum=-0.437;SOR=0.301	GT:AD:DP:GQ:PL	0/0:187,0:187:99:0,562,7954
1	16955128	rs1762949	A	G	2811.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=3.221;ClippingRankSum=0.073;DB;DP=90;FS=1.504;MQ=56.17;MQRankSum=-13.895;QD=8.44;ReadPosRankSum=1.190;SOR=0.587	GT:AD:DP:GQ:PL	0/1:63,27:90:99:881,0,2380
1	16955217	rs4661868	C	T	3111.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=-0.703;DB;DP=103;FS=4.342;MQ=58.76;MQRankSum=0.108;QD=8.74;ReadPosRankSum=2.085;SOR=0.483	GT:AD:DP:GQ:PL	0/1:76,27:103:99:864,0,2903
1	16955289	rs10157908	A	G	523.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.475;ClippingRankSum=1.651;DB;DP=76;FS=0.000;MQ=59.90;MQRankSum=0.191;QD=2.49;ReadPosRankSum=3.966;SOR=0.747	GT:AD:DP:GQ:PL	0/0:76,0:76:99:0,229,3309
1	16969381	rs9727604	C	T	26696.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.634;DB;DP=357;FS=6.370;MQ=45.85;MQRankSum=-26.050;QD=21.97;ReadPosRankSum=1.888;SOR=1.138	GT:AD:DP:GQ:PL	0/1:210,147:357:99:4991,0,7826
1	16971948	rs2209174	C	G	5050.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=-0.618;DB;DP=139;FS=1.692;MQ=57.16;MQRankSum=-0.043;QD=9.73;ReadPosRankSum=2.430;SOR=1.039	GT:AD:DP:GQ:PL	0/1:107,32:139:99:889,0,4253
1	16972067	rs1360574	C	T	531.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.768;ClippingRankSum=0.039;DB;DP=234;FS=1.767;MQ=41.37;MQRankSum=3.326;QD=2.51;ReadPosRankSum=3.722;SOR=1.314	GT:AD:DP:GQ:PL	0/0:234,0:234:99:0,710,10507
1	16972068	rs1360575	A	G	1982.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.081;ClippingRankSum=0.811;DB;DP=233;FS=4.054;MQ=41.31;MQRankSum=1.229;QD=9.18;ReadPosRankSum=2.445;SOR=1.332	GT:AD:DP:GQ:PL	0/0:233,0:233:99:0,700,9977
1	16972134	rs4661404	C	T	7422.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.891;ClippingRankSum=0.138;DB;DP=256;FS=0.596;MQ=44.87;MQRankSum=-11.664;QD=7.73;ReadPosRankSum=2.487;SOR=0.758	GT:AD:DP:GQ:PL	0/1:205,51:256:99:1267,0,7787
1	16972189	rs9728527	C	A	425.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.030;ClippingRankSum=-0.295;DB;DP=204;FS=0.000;MQ=53.76;MQRankSum=2.991;QD=2.31;ReadPosRankSum=-0.051;SOR=0.944	GT:AD:DP:GQ:PL	0/0:204,0:204:99:0,614,8792
1	16972190	rs4661880	T	C	3679.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.227;ClippingRankSum=-0.361;DB;DP=200;FS=4.088;MQ=54.01;MQRankSum=-18.450;QD=5.20;ReadPosRankSum=-1.715;SOR=0.351	GT:AD:DP:GQ:PL	0/1:173,27:200:99:484,0,6691
1	16972217	rs4661405	C	G	1982.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.307;ClippingRankSum=0.741;DB;DP=175;FS=0.000;MQ=56.87;MQRankSum=-14.701;QD=3.52;ReadPosRankSum=-2.867;SOR=0.547	GT:AD:DP:GQ:PL	0/1:157,18:175:99:233,0,6517
1	16972239	rs11260860	G	A	2521.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.228;ClippingRankSum=0.963;DB;DP=175;FS=0.000;MQ=55.28;MQRankSum=-14.349;QD=4.71;ReadPosRankSum=-2.822;SOR=2.274	GT:AD:DP:GQ:PL	0/1:150,25:175:99:521,0,6229
1	16972920	rs4661882	C	T	20404.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.655;ClippingRankSum=0.486;DB;DP=632;FS=0.605;MQ=58.88;MQRankSum=-3.311;QD=10.65;ReadPosRankSum=0.485;SOR=0.798	GT:AD:DP:GQ:PL	0/1:415,217:632:99:7471,0,15814
1	16972940	rs1970921	G	A	6713.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.394;ClippingRankSum=-0.626;DB;DP=674;FS=0.000;MQ=55.74;MQRankSum=7.710;QD=13.81;ReadPosRankSum=-0.482;SOR=0.820	GT:AD:DP:GQ:PL	0/0:674,0:674:99:0,2038,29342
1	16973152	rs1970920	A	G	8418.13	SNP_MQRankSumLow	AC=0;AF=0.00;AN=2;BaseQRankSum=2.945;ClippingRankSum=-0.579;DB;DP=628;FS=2.878;MQ=57.86;MQRankSum=-23.966;QD=15.85;ReadPosRankSum=-1.392;SOR=1.033	GT:AD:DP:GQ:PL	0/0:616,12:628:99:0,1110,24715
1	16973184	rs55828106	G	A	6814.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=6.448;ClippingRankSum=-0.807;DB;DP=677;FS=2.078;MQ=52.86;MQRankSum=-7.574;QD=12.37;ReadPosRankSum=2.315;SOR=0.432	GT:AD:DP:GQ:PL	0/0:677,0:677:99:0,2033,28632
1	16973198	.	G	A	715.13	SNP_LowQualityDepth;SNP_MQRankSumLow	AC=0;AF=0.00;AN=2;BaseQRankSum=2.638;ClippingRankSum=-0.337;DP=666;FS=47.855;MQ=50.33;MQRankSum=-19.625;QD=1.29;ReadPosRankSum=8.917;SOR=7.255	GT:AD:DP:GQ:PL	0/0:612,54:666:86:0,86,23559
1	16973299	rs11582705	A	G	1197.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=1.682;DB;DP=698;FS=0.000;MQ=35.08;MQRankSum=5.183;QD=1.71;ReadPosRankSum=-2.856;SOR=0.594	GT:AD:DP:GQ:PL	0/1:614,84:698:99:1228,0,20731
1	16973388	rs76880030	C	T	22075.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=7.395;ClippingRankSum=0.112;DB;DP=906;FS=29.281;MQ=47.99;MQRankSum=-36.825;QD=7.74;ReadPosRankSum=-2.301;SOR=2.434	GT:AD:DP:GQ:PL	0/1:761,145:906:99:3435,0,29203
1	16973400	rs2761542	G	A	17131.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=9.489;ClippingRankSum=0.776;DB;DP=890;FS=21.349;MQ=49.17;MQRankSum=-36.132;QD=6.16;ReadPosRankSum=3.830;SOR=2.332	GT:AD:DP:GQ:PL	0/1:772,118:890:99:2337,0,32398
1	16973419	rs202199433	G	A	7287.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.262;ClippingRankSum=-0.700;DB;DP=833;FS=28.881;MQ=46.78;MQRankSum=-26.583;QD=2.79;ReadPosRankSum=0.074;SOR=3.174	GT:AD:DP:GQ:PL	0/1:721,112:833:99:1385,0,29729
1	16973423	rs77783374	C	T	3624.13	SNP_MQRankSumLow;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=5.293;ClippingRankSum=-1.546;DB;DP=824;FS=0.000;MQ=46.21;MQRankSum=-12.837;QD=5.72;ReadPosRankSum=-0.704;SOR=0.635	GT:AD:DP:GQ:PL	0/0:824,0:824:99:0,2525,36452
1	16973519	rs2501762	G	A	1692.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=4.404;ClippingRankSum=-0.877;DB;DP=744;FS=10.216;MQ=32.77;MQRankSum=-5.752;QD=0.99;ReadPosRankSum=0.578;SOR=2.037	GT:AD:DP:GQ:PL	0/1:649,95:744:99:838,0,20857
1	16973606	rs76859932	G	T	4191.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.648;ClippingRankSum=0.368;DB;DP=1080;FS=1.009;MQ=41.11;MQRankSum=-4.322;QD=4.26;ReadPosRankSum=-0.678;SOR=0.846	GT:AD:DP:GQ:PL	0/0:1080,0:1080:99:0,3244,41067
1	16973919	rs141898836	A	G	7428.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;ClippingRankSum=0.556;DB;DP=598;FS=0.000;MQ=33.44;MQRankSum=-9.920;QD=3.66;ReadPosRankSum=-0.300;SOR=0.712	GT:AD:DP:GQ:PL	0/1:488,110:598:99:1609,0,15782
1	16973996	rs200256873	A	G	4185.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.392;ClippingRankSum=-0.040;DB;DP=383;FS=6.700;MQ=31.38;MQRankSum=-3.748;QD=3.46;ReadPosRankSum=-1.103;SOR=1.632	GT:AD:DP:GQ:PL	0/1:321,62:383:99:1320,0,12244
1	16974010	rs201140718	G	C	2177.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=-3.174;DB;DP=298;FS=5.845;MQ=32.16;MQRankSum=-2.045;QD=2.44;ReadPosRankSum=-5.328;SOR=1.774	GT:AD:DP:GQ:PL	0/1:259,39:298:99:916,0,10813
1	16974021	rs142740321	G	A	1883.13	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=3.112;ClippingRankSum=0.762;DB;DP=246;FS=12.844;MQ=32.49;MQRankSum=1.081;QD=9.28;ReadPosRankSum=-1.355;SOR=2.578	GT:AD:DP:GQ:PL	0/0:239,7:246:99:0,498,8017
1	16974243	.	G	C	268.16	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=2.720;ClippingRankSum=-1.265;DP=263;FS=1.275;MQ=40.08;MQRankSum=-11.044;QD=0.55;ReadPosRankSum=-3.068;SOR=1.132	GT:AD:DP:GQ:PL	0/0:241,22:263:99:0,118,10063
1	16974256	.	G	C	4038.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=-0.159;DP=286;FS=30.161;MQ=40.51;MQRankSum=-17.344;QD=4.94;ReadPosRankSum=-1.669;SOR=7.464	GT:AD:DP:GQ:PL	0/1:241,45:286:99:910,0,8772
1	16974312	.	G	C	711.16	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.147;DP=362;FS=18.240;MQ=42.94;MQRankSum=-10.473;QD=0.82;ReadPosRankSum=0.080;SOR=4.781	GT:AD:DP:GQ:PL	0/1:327,35:362:99:265,0,12229
1	16974454	.	T	TGGGC	364.09	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.247;ClippingRankSum=1.562;DP=459;FS=0.000;MQ=50.63;MQRankSum=-7.119;QD=1.17;ReadPosRankSum=-3.595;SOR=0.821	GT:AD:DP:GQ:PL	0/0:445,14:459:99:0,873,19076
1	16974511	rs58679574	G	A	2080.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.748;ClippingRankSum=-0.707;DB;DP=557;FS=0.975;MQ=48.35;MQRankSum=-3.444;QD=5.17;ReadPosRankSum=-3.347;SOR=0.596	GT:AD:DP:GQ:PL	0/0:557,0:557:99:0,1673,22842
1	16974592	rs201212576	C	T	3829.92	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=-0.289;DB;DP=589;FS=5.585;MQ=50.19;MQRankSum=-11.890;QD=1.92;ReadPosRankSum=1.429;SOR=0.799	GT:AD:DP:GQ:PL	0/1:504,85:589:99:1652,0,19139
1	16974637	rs16854791	T	C	11500.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=-1.320;DB;DP=565;FS=25.223;MQ=49.18;MQRankSum=-13.414;QD=5.98;ReadPosRankSum=0.552;SOR=2.376	GT:AD:DP:GQ:PL	0/1:470,95:565:99:2328,0,18157
1	16974662	rs28460410	C	A	5497.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.769;DB;DP=560;FS=29.968;MQ=47.11;MQRankSum=-7.248;QD=3.04;ReadPosRankSum=-4.284;SOR=3.165	GT:AD:DP:GQ:PL	0/1:482,78:560:99:1349,0,19251
1	16974666	rs28503658	C	T	1675.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.279;ClippingRankSum=3.052;DB;DP=567;FS=11.840;MQ=46.67;MQRankSum=1.107;QD=3.82;ReadPosRankSum=0.766;SOR=1.586	GT:AD:DP:GQ:PL	0/0:567,0:567:99:0,1707,23952
1	16974745	rs28526603	G	A	2273.92	SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.957;DB;DP=583;FS=57.193;MQ=41.00;MQRankSum=-16.800;QD=1.37;ReadPosRankSum=-1.255;SOR=5.516	GT:AD:DP:GQ:PL	0/1:534,49:583:73:73,0,22208
1	16974758	rs28484638	G	A	4612.92	SNP_MQRankSumLow;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0.079;DB;DP=584;FS=68.490;MQ=41.47;MQRankSum=-19.024;QD=2.76;ReadPosRankSum=0.940;SOR=5.418	GT:AD:DP:GQ:PL	0/1:540,44:584:99:414,0,20362
1	16974780	rs28537673	C	T	2333.16	SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-5.098;ClippingRankSum=1.498;DB;DP=615;FS=44.289;MQ=40.60;MQRankSum=-15.913;QD=1.99;ReadPosRankSum=0.541;SOR=3.477	GT:AD:DP:GQ:PL	0/0:572,43:615:99:0,158,24956
1	16974786	rs28622547	G	C	3428.95	SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.418;ClippingRankSum=1.874;DB;DP=630;FS=46.717;MQ=40.47;MQRankSum=-17.063;QD=1.87;ReadPosRankSum=-0.366;SOR=3.165	GT:AD:DP:GQ:PL	0/1:587,43:630:21:21,0,21646
1	16974868	rs28715800	G	T	1293.13	SNP_MQRankSumLow;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.802;ClippingRankSum=-0.424;DB;DP=667;FS=22.377;MQ=51.68;MQRankSum=-19.940;QD=3.26;ReadPosRankSum=-5.027;SOR=0.596	GT:AD:DP:GQ:PL	0/0:618,49:667:99:0,121,24586
1	16974869	rs4570422	G	C	18788.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.613;ClippingRankSum=0.888;DB;DP=669;FS=0.661;MQ=51.81;MQRankSum=1.529;QD=9.51;ReadPosRankSum=1.135;SOR=0.852	GT:AD:DP:GQ:PL	0/1:453,216:669:99:6947,0,16839
1	16974901	rs28562993	A	G	2944.16	SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.690;DB;DP=711;FS=1.079;MQ=52.69;MQRankSum=-22.857;QD=1.99;ReadPosRankSum=-4.394;SOR=0.531	GT:AD:DP:GQ:PL	0/0:673,38:711:99:0,482,26880
1	16974915	rs59636978	C	T	1356.13	SNP_MQRankSumLow	AC=0;AF=0.00;AN=2;BaseQRankSum=1.848;ClippingRankSum=-0.225;DB;DP=750;FS=1.079;MQ=51.52;MQRankSum=-21.298;QD=2.86;ReadPosRankSum=4.683;SOR=1.006	GT:AD:DP:GQ:PL	0/0:715,35:750:99:0,851,30294
1	16974972	rs58464479	C	T	3260.13	SNP_MQRankSumLow	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.990;DB;DP=874;FS=2.852;MQ=52.56;MQRankSum=-15.434;QD=5.12;ReadPosRankSum=-2.856;SOR=1.299	GT:AD:DP:GQ:PL	0/0:874,0:874:99:0,2633,37052
1	16975002	rs2093773	C	T	5956.13	SNP_MQRankSumLow	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.964;ClippingRankSum=-1.510;DB;DP=913;FS=12.458;MQ=55.16;MQRankSum=-26.406;QD=8.98;ReadPosRankSum=-0.579;SOR=2.222	GT:AD:DP:GQ:PL	0/0:875,38:913:99:0,776,35015
1	16975045	rs55763726	G	A	9350.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=6.650;ClippingRankSum=0.187;DB;DP=1059;FS=22.594;MQ=47.81;MQRankSum=-23.038;QD=2.83;ReadPosRankSum=1.239;SOR=2.581	GT:AD:DP:GQ:PL	0/1:908,151:1059:99:2355,0,33998
1	16975202	rs28602904	T	C	9764.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=8.904;ClippingRankSum=0.168;DB;DP=1023;FS=12.376;MQ=43.67;MQRankSum=-19.364;QD=3.02;ReadPosRankSum=-0.007;SOR=1.042	GT:AD:DP:GQ:PL	0/1:899,124:1023:99:1221,0,32709
1	16975230	rs2761535	G	C	78945.16	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;ClippingRankSum=1.049;DB;DP=851;FS=0.775;MQ=40.64;MQRankSum=-31.509;QD=29.23;ReadPosRankSum=-0.829;SOR=0.924	GT:AD:DP:GQ:PL	0/1:244,607:851:99:20257,0,7523
1	16975429	rs200935019	T	C	1173.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.030;ClippingRankSum=1.344;DB;DP=424;FS=2.196;MQ=37.53;MQRankSum=-11.576;QD=4.73;ReadPosRankSum=-0.002;SOR=1.159	GT:AD:DP:GQ:PL	0/0:391,33:424:99:0,251,14117
1	16975489	rs79648786	C	G	69.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.035;ClippingRankSum=-1.483;DB;DP=190;FS=3.249;MQ=37.56;MQRankSum=-8.400;QD=0.91;ReadPosRankSum=3.080;SOR=1.352	GT:AD:DP:GQ:PL	0/0:182,8:190:99:0,331,8006
1	16975495	rs199672680	T	C	7319.16	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.580;DB;DP=175;FS=1.676;MQ=37.01;MQRankSum=-13.778;QD=18.12;ReadPosRankSum=-4.337;SOR=0.517	GT:AD:DP:GQ:PL	0/1:99,76:175:99:2099,0,3565
1	16975642	rs201351389	C	T	184.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=-0.582;DB;DP=309;FS=0.920;MQ=34.74;MQRankSum=-10.479;QD=0.36;ReadPosRankSum=-1.222;SOR=0.497	GT:AD:DP:GQ:PL	0/1:273,36:309:99:115,0,9202
1	16975724	rs149232270	GC	G	102.09	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=2.744;ClippingRankSum=0.017;DB;DP=353;FS=2.348;MQ=36.03;MQRankSum=-1.395;QD=0.41;ReadPosRankSum=1.954;SOR=0.882	GT:AD:DP:GQ:PL	0/0:353,0:353:99:0,1061,12482
1	16975831	rs61772254	C	T	2450.92	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=-0.466;DB;DP=414;FS=2.575;MQ=35.70;MQRankSum=-14.666;QD=2.00;ReadPosRankSum=1.096;SOR=1.037	GT:AD:DP:GQ:PL	0/1:361,53:414:99:441,0,12598
1	16975912	rs148656339	CCCTGTT	C	91.09	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=2.762;ClippingRankSum=-0.542;DB;DP=411;FS=5.967;MQ=35.98;MQRankSum=-0.298;QD=0.33;ReadPosRankSum=1.745;SOR=5.867	GT:AD:DP:GQ:PL	0/0:411,0:411:99:0,1236,18400
1	16975994	rs2261801	T	C	990.16	SNP_LowQualityDepth;SNP_MQRankSumLow	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.710;ClippingRankSum=1.308;DB;DP=384;FS=15.541;MQ=46.13;MQRankSum=-17.708;QD=1.38;ReadPosRankSum=-3.137;SOR=2.282	GT:AD:DP:GQ:PL	0/0:353,31:384:99:0,217,13819
1	16976032	rs2483047	A	C	10664.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;ClippingRankSum=-1.238;DB;DP=464;FS=4.821;MQ=45.34;MQRankSum=7.626;QD=7.67;ReadPosRankSum=0.688;SOR=0.882	GT:AD:DP:GQ:PL	0/1:337,127:464:99:3858,0,12157
1	16976345	rs200927593	T	C	1310.16	SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.374;ClippingRankSum=-0.047;DB;DP=691;FS=15.190;MQ=38.93;MQRankSum=-18.473;QD=1.06;ReadPosRankSum=0.167;SOR=2.675	GT:AD:DP:GQ:PL	0/0:645,46:691:99:0,598,24613
1	16976451	rs201492135	G	A	1915.92	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=4.851;ClippingRankSum=-1.215;DB;DP=443;FS=38.293;MQ=33.75;MQRankSum=-5.339;QD=1.45;ReadPosRankSum=-0.623;SOR=2.310	GT:AD:DP:GQ:PL	0/1:399,44:443:99:381,0,13198
1	16976528	.	G	T	556.13	SNP_MQRankSumLow	AC=0;AF=0.00;AN=2;BaseQRankSum=2.768;ClippingRankSum=0.870;DP=467;FS=0.000;MQ=46.43;MQRankSum=-12.671;QD=2.42;ReadPosRankSum=2.503;SOR=0.727	GT:AD:DP:GQ:PL	0/0:428,39:467:51:0,51,16236
1	16976539	rs199931165	A	G	1428.16	SNP_LowQualityDepth;SNP_MQRankSumLow	AC=0;AF=0.00;AN=2;BaseQRankSum=2.567;ClippingRankSum=0.164;DB;DP=462;FS=35.896;MQ=47.24;MQRankSum=-16.721;QD=1.89;ReadPosRankSum=0.851;SOR=4.287	GT:AD:DP:GQ:PL	0/0:424,38:462:99:0,136,16323
1	16976585	rs1135350	C	T	2987.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=-0.015;DB;DP=511;FS=1.639;MQ=41.64;MQRankSum=-15.398;QD=2.05;ReadPosRankSum=-6.009;SOR=0.491	GT:AD:DP:GQ:PL	0/1:462,49:511:99:258,0,16825
1	16976620	rs55885953	A	G	15951.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.837;ClippingRankSum=1.986;DB;DP=513;FS=0.552;MQ=37.71;MQRankSum=1.166;QD=10.08;ReadPosRankSum=0.606;SOR=0.615	GT:AD:DP:GQ:PL	0/1:385,128:513:99:3478,0,13571
1	16976641	rs1057417	C	T	5940.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=1.269;DB;DP=555;FS=5.061;MQ=37.24;MQRankSum=-1.079;QD=3.40;ReadPosRankSum=1.728;SOR=0.623	GT:AD:DP:GQ:PL	0/1:492,63:555:99:1088,0,21167
1	16976649	rs1057333	C	T	6058.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.399;ClippingRankSum=-0.276;DB;DP=569;FS=6.472;MQ=37.40;MQRankSum=0.173;QD=3.45;ReadPosRankSum=3.312;SOR=0.583	GT:AD:DP:GQ:PL	0/1:505,64:569:99:1137,0,20961
1	16976679	rs1065528	G	A	34564.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.696;ClippingRankSum=0.868;DB;DP=460;FS=4.842;MQ=37.45;MQRankSum=3.517;QD=24.69;ReadPosRankSum=1.426;SOR=1.117	GT:AD:DP:GQ:PL	0/1:137,323:460:99:11088,0,4311
1	16976681	rs3175284	G	T	4156.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;ClippingRankSum=0.061;DB;DP=452;FS=9.167;MQ=37.43;MQRankSum=1.038;QD=3.02;ReadPosRankSum=5.519;SOR=0.670	GT:AD:DP:GQ:PL	0/1:387,65:452:99:988,0,15815
1	16976825	rs2761525	C	A	1039.92	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=1.222;DB;DP=238;FS=0.000;MQ=55.96;MQRankSum=-9.848;QD=1.60;ReadPosRankSum=-3.212;SOR=0.683	GT:AD:DP:GQ:PL	0/1:219,19:238:57:57,0,8665
1	17017675	rs2743471	C	A	23963.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.214;DB;DP=168;FS=0.000;MQ=60.00;MQRankSum=-1.010;QD=29.24;ReadPosRankSum=1.677;SOR=0.334	GT:AD:DP:GQ:PL	1/1:0,168:168:99:7144,504,0
1	17017717	rs12561804	C	T	1170.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.473;ClippingRankSum=0.262;DB;DP=125;FS=1.163;MQ=60.00;MQRankSum=-0.067;QD=9.75;ReadPosRankSum=-0.365;SOR=0.772	GT:AD:DP:GQ:PL	0/0:125,0:125:99:0,385,5605
1	17017734	rs12561805	C	T	1025.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.409;ClippingRankSum=0.277;DB;DP=102;FS=1.088;MQ=60.00;MQRankSum=-1.222;QD=9.67;ReadPosRankSum=-0.691;SOR=0.479	GT:AD:DP:GQ:PL	0/0:102,0:102:99:0,310,4550
1	17022952	rs557690	C	A	19768.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;FS=0.000;MQ=59.23;QD=29.66;SOR=1.226	GT:AD:DP:GQ:PL	1/1:0,152:152:99:6436,456,0
1	17023110	rs11260887	G	A	12846.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.535;ClippingRankSum=-0.918;DB;DP=254;FS=0.000;MQ=58.73;MQRankSum=-7.306;QD=15.52;ReadPosRankSum=1.848;SOR=0.736	GT:AD:DP:GQ:PL	0/1:149,105:254:99:3790,0,5874
1	17023126	rs2610633	C	G	15718.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.134;ClippingRankSum=-0.813;DB;DP=250;FS=0.539;MQ=58.09;MQRankSum=10.721;QD=18.74;ReadPosRankSum=0.501;SOR=0.626	GT:AD:DP:GQ:PL	0/1:103,147:250:99:5505,0,4048
1	17023143	rs559507	C	T	13194.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.845;ClippingRankSum=0.654;DB;DP=258;FS=3.377;MQ=57.78;MQRankSum=-14.206;QD=15.49;ReadPosRankSum=0.847;SOR=0.943	GT:AD:DP:GQ:PL	0/1:150,108:258:99:3752,0,6052
1	17023182	rs614461	C	G	14803.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=4.304;ClippingRankSum=2.555;DB;DP=275;FS=1.180;MQ=54.83;MQRankSum=-22.496;QD=16.13;ReadPosRankSum=3.275;SOR=0.806	GT:AD:DP:GQ:PL	0/1:158,117:275:99:4179,0,5897
1	17023376	rs613579	C	T	21510.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.789;ClippingRankSum=1.641;DB;DP=352;FS=0.528;MQ=59.29;MQRankSum=3.472;QD=18.48;ReadPosRankSum=-0.563;SOR=0.632	GT:AD:DP:GQ:PL	0/1:173,179:352:99:6727,0,6406
1	17023403	rs10907267	G	A	19042.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.587;ClippingRankSum=-0.015;DB;DP=314;FS=1.137;MQ=59.91;MQRankSum=1.409;QD=17.57;ReadPosRankSum=1.605;SOR=0.591	GT:AD:DP:GQ:PL	0/1:158,156:314:99:5791,0,5944
1	17023483	rs563062	C	T	13324.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=-0.687;DB;DP=226;FS=0.000;MQ=59.39;MQRankSum=-5.427;QD=17.15;ReadPosRankSum=0.662;SOR=0.662	GT:AD:DP:GQ:PL	0/1:110,116:226:99:4327,0,4005
1	17023509	rs563142	T	C	11736.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.630;ClippingRankSum=-1.238;DB;DP=205;FS=2.068;MQ=59.35;MQRankSum=-1.139;QD=18.08;ReadPosRankSum=2.850;SOR=1.507	GT:AD:DP:GQ:PL	0/1:91,114:205:99:4253,0,3216
1	17023511	rs563144	C	A	28036.90	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.380;DB;DP=202;FS=0.000;MQ=59.34;MQRankSum=-0.641;QD=30.84;ReadPosRankSum=0.434;SOR=5.940	GT:AD:DP:GQ:PL	1/1:1,201:202:99:8815,606,0
1	17023569	rs563960	T	C	18268.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;FS=0.000;MQ=59.57;QD=28.83;SOR=7.500	GT:AD:DP:GQ:PL	1/1:0,133:133:99:5613,398,0
1	17025992	rs12026928	G	A	4496.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.248;DB;DP=63;FS=4.945;MQ=60.21;MQRankSum=2.495;QD=23.67;ReadPosRankSum=0.943;SOR=1.102	GT:AD:DP:GQ:PL	0/1:19,44:63:99:1654,0,567
1	17026004	rs9661305	C	G	316.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.710;ClippingRankSum=-0.574;DB;DP=73;FS=0.000;MQ=60.18;MQRankSum=-0.790;QD=4.79;ReadPosRankSum=0.870;SOR=0.678	GT:AD:DP:GQ:PL	0/0:73,0:73:99:0,222,3211
1	17026043	rs60794777	G	GGCA	6250.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=-0.407;DB;DP=80;FS=7.359;MQ=61.97;MQRankSum=2.677;QD=23.95;ReadPosRankSum=-1.414;SOR=0.449	GT:AD:DP:GQ:PL	0/1:25,55:80:99:2255,0,870
1	17026087	rs678369	G	A	7098.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=-0.347;DB;DP=86;FS=0.000;MQ=61.93;MQRankSum=1.857;QD=25.54;ReadPosRankSum=0.755;SOR=0.697	GT:AD:DP:GQ:PL	0/1:27,59:86:99:2273,0,836
1	17026551	rs665763	G	C	8099.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.602;ClippingRankSum=-0.122;DB;DP=117;FS=12.050;MQ=57.47;MQRankSum=-6.319;QD=20.10;ReadPosRankSum=-1.213;SOR=1.391	GT:AD:DP:GQ:PL	0/1:47,70:117:99:2650,0,1703
1	17029257	rs12125112	T	C	12212.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=1.307;DB;DP=119;FS=1.567;MQ=53.09;MQRankSum=1.404;QD=28.47;ReadPosRankSum=2.518;SOR=1.219	GT:AD:DP:GQ:PL	0/1:38,81:119:99:2948,0,1163
1	17029462	rs11260891	A	G	3975.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=-0.502;DB;DP=117;FS=7.237;MQ=58.49;MQRankSum=-0.404;QD=12.54;ReadPosRankSum=-1.348;SOR=0.318	GT:AD:DP:GQ:PL	0/1:88,29:117:99:923,0,3201
1	17029513	rs523936	C	G	3763.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.215;DB;DP=74;FS=5.630;MQ=58.34;MQRankSum=-4.621;QD=19.60;ReadPosRankSum=-0.309;SOR=0.390	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1476,0,1198
1	17030325	rs601893	A	G	5971.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=-0.302;DB;DP=90;FS=7.036;MQ=59.87;MQRankSum=0.665;QD=21.33;ReadPosRankSum=0.457;SOR=0.278	GT:AD:DP:GQ:PL	0/1:42,48:90:99:1698,0,1520
1	17030336	rs4661915	C	T	4094.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=-0.713;DB;DP=92;FS=2.602;MQ=59.95;MQRankSum=0.189;QD=14.32;ReadPosRankSum=1.557;SOR=0.470	GT:AD:DP:GQ:PL	0/1:67,25:92:99:724,0,2505
1	17030504	rs601031	T	A	1983.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.662;DB;DP=111;FS=6.569;MQ=57.37;MQRankSum=0.687;QD=8.48;ReadPosRankSum=0.607;SOR=0.771	GT:AD:DP:GQ:PL	0/1:82,29:111:99:924,0,4108
1	17030515	rs201665864	G	A	1898.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.002;DB;DP=107;FS=8.399;MQ=58.02;MQRankSum=3.132;QD=8.25;ReadPosRankSum=1.515;SOR=1.035	GT:AD:DP:GQ:PL	0/1:82,25:107:99:785,0,4708
1	17030518	rs200139772	C	T	1939.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=-1.135;DB;DP=110;FS=8.331;MQ=58.18;MQRankSum=2.157;QD=8.36;ReadPosRankSum=0.908;SOR=0.938	GT:AD:DP:GQ:PL	0/1:85,25:110:99:825,0,4611
1	17030519	rs201039793	T	G	1945.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=-1.102;DB;DP=108;FS=8.331;MQ=58.30;MQRankSum=3.820;QD=8.49;ReadPosRankSum=1.017;SOR=0.938	GT:AD:DP:GQ:PL	0/1:83,25:108:99:825,0,4611
1	17030590	rs590170	G	A	1831.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=-0.595;DB;DP=150;FS=1.745;MQ=60.00;MQRankSum=0.725;QD=6.08;ReadPosRankSum=0.689;SOR=0.514	GT:AD:DP:GQ:PL	0/1:117,33:150:99:922,0,4450
1	17030716	rs4661917	G	A	3691.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=-0.315;DB;DP=80;FS=1.037;MQ=59.97;MQRankSum=0.548;QD=14.65;ReadPosRankSum=0.102;SOR=0.464	GT:AD:DP:GQ:PL	0/1:58,22:80:99:698,0,2257
1	17030729	rs12029338	C	T	1008.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=-0.046;DB;DP=82;FS=4.387;MQ=59.96;MQRankSum=-0.496;QD=6.63;ReadPosRankSum=-0.153;SOR=0.171	GT:AD:DP:GQ:PL	0/1:63,19:82:99:586,0,2374
1	17033758	rs1736691	A	G	9483.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=1.139;DB;DP=135;FS=8.238;MQ=52.69;MQRankSum=-15.467;QD=22.16;ReadPosRankSum=3.089;SOR=1.342	GT:AD:DP:GQ:PL	0/1:63,72:135:99:2709,0,2312
1	17033805	rs59259153	C	T	8519.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.608;DB;DP=158;FS=0.000;MQ=53.15;MQRankSum=-19.681;QD=16.26;ReadPosRankSum=1.542;SOR=0.774	GT:AD:DP:GQ:PL	0/1:112,46:158:99:1417,0,4385
1	17033854	rs2476568	C	T	13047.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=1.106;DB;DP=171;FS=0.536;MQ=53.49;MQRankSum=-18.850;QD=22.77;ReadPosRankSum=-0.065;SOR=0.656	GT:AD:DP:GQ:PL	0/1:76,95:171:99:3351,0,2646
1	17034041	rs2743505	T	C	17016.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;FS=0.000;MQ=56.04;QD=28.57;SOR=1.739	GT:AD:DP:GQ:PL	1/1:0,122:122:99:5192,365,0
1	17034110	rs55767123	C	T	1037.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;ClippingRankSum=-0.013;DB;DP=98;FS=3.622;MQ=56.76;MQRankSum=1.697;QD=10.48;ReadPosRankSum=0.430;SOR=0.412	GT:AD:DP:GQ:PL	0/1:66,32:98:99:1068,0,2464
1	17034125	rs141324796	C	CAGCT	5150.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.794;ClippingRankSum=0.031;DB;DP=94;FS=0.906;MQ=57.92;MQRankSum=1.226;QD=14.89;ReadPosRankSum=-0.887;SOR=0.778	GT:AD:DP:GQ:PL	0/1:77,17:94:99:462,0,3175
1	17034167	rs2988287	G	A	839.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.432;ClippingRankSum=-0.064;DB;DP=102;FS=2.743;MQ=58.57;MQRankSum=-8.106;QD=9.54;ReadPosRankSum=-0.730;SOR=0.453	GT:AD:DP:GQ:PL	0/0:102,0:102:99:0,306,4334
1	17034250	rs61773400	C	G	8578.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=-1.507;DB;DP=64;FS=3.127;MQ=59.83;MQRankSum=0.289;QD=29.37;ReadPosRankSum=-1.409;SOR=0.421	GT:AD:DP:GQ:PL	0/1:20,44:64:99:1622,0,672
1	17034268	rs55732718	G	A	616.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.863;DB;DP=72;FS=1.876;MQ=59.97;MQRankSum=-0.189;QD=8.56;ReadPosRankSum=0.940;SOR=0.923	GT:AD:DP:GQ:PL	0/1:50,22:72:99:647,0,1981
1	17034455	rs140689885	CGCGCGCGT	C	5031.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.789;ClippingRankSum=-0.516;DB;DP=120;FS=6.225;MQ=58.49;MQRankSum=0.695;QD=12.90;ReadPosRankSum=0.045;SOR=0.985	GT:AD:DP:GQ:PL	0/1:101,19:120:99:488,0,4144
1	17044433	rs3856289	C	T	573.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=1.287;DB;DP=67;FS=2.187;MQ=59.81;MQRankSum=0.496;QD=8.55;ReadPosRankSum=1.458;SOR=1.089	GT:AD:DP:GQ:PL	0/1:48,19:67:99:604,0,1852
1	17044457	rs1318341	G	C	10494.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.000;MQ=59.17;QD=31.09;SOR=5.362	GT:AD:DP:GQ:PL	1/1:0,73:73:99:3085,218,0
1	17044511	rs2773185	T	C	14054.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;FS=0.000;MQ=59.39;QD=28.84;SOR=3.392	GT:AD:DP:GQ:PL	1/1:0,96:96:99:4038,288,0
1	17044662	rs13374664	G	C	7043.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;ClippingRankSum=-1.502;DB;DP=110;FS=2.474;MQ=51.49;MQRankSum=1.541;QD=19.35;ReadPosRankSum=1.995;SOR=0.861	GT:AD:DP:GQ:PL	0/1:75,35:110:99:1154,0,2836
1	17044695	rs2773186	A	G	3576.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.582;ClippingRankSum=-0.317;DB;DP=90;FS=8.555;MQ=54.54;MQRankSum=-0.041;QD=12.91;ReadPosRankSum=-0.770;SOR=0.277	GT:AD:DP:GQ:PL	0/1:52,38:90:99:1346,0,1954
1	17046361	rs3856291	A	T	9233.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;ClippingRankSum=-1.209;DB;DP=143;FS=1.179;MQ=58.69;MQRankSum=1.509;QD=18.65;ReadPosRankSum=0.055;SOR=0.906	GT:AD:DP:GQ:PL	0/1:111,32:143:99:909,0,4337
1	17046456	rs3856292	T	C	12441.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;ClippingRankSum=-0.484;DB;DP=223;FS=2.898;MQ=60.00;MQRankSum=-1.722;QD=17.04;ReadPosRankSum=0.788;SOR=0.465	GT:AD:DP:GQ:PL	0/1:172,51:223:99:1508,0,6793
1	17046549	rs1755332	G	A	1819.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=-0.346;DB;DP=248;FS=1.026;MQ=56.85;MQRankSum=2.830;QD=7.31;ReadPosRankSum=3.235;SOR=0.828	GT:AD:DP:GQ:PL	0/1:184,64:248:99:1850,0,6982
1	17046595	rs3856293	T	C	14605.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=-0.007;DB;DP=252;FS=1.230;MQ=57.38;MQRankSum=-12.543;QD=16.89;ReadPosRankSum=-1.372;SOR=0.816	GT:AD:DP:GQ:PL	0/1:199,53:252:99:1529,0,7925
1	17046613	rs3856294	C	T	17171.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.948;ClippingRankSum=0.874;DB;DP=221;FS=1.299;MQ=58.43;MQRankSum=-9.030;QD=21.93;ReadPosRankSum=-0.420;SOR=0.817	GT:AD:DP:GQ:PL	0/1:106,115:221:99:4332,0,3812
1	17046698	rs3982089	C	G	6977.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=-1.319;DB;DP=147;FS=2.321;MQ=57.95;MQRankSum=-3.441;QD=15.51;ReadPosRankSum=1.149;SOR=0.184	GT:AD:DP:GQ:PL	0/1:123,24:147:99:548,0,4852
1	17060305	rs200904561	C	T	45.57	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.720;ClippingRankSum=-0.720;DB;DP=2;FS=0.000;MQ=40.00;MQRankSum=0.720;QD=15.19;ReadPosRankSum=1.380;SOR=0.307	GT:AD:DP:GQ:PL	0/0:2,0:2:6:0,6,48
1	17081018	rs115845903	C	T	122.02	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=33.36;QD=30.50;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
1	17083652	rs113710576	C	T	3731.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.606;ClippingRankSum=-0.933;DB;DP=214;FS=0.000;MQ=43.55;MQRankSum=-2.191;QD=4.47;ReadPosRankSum=3.793;SOR=0.672	GT:AD:DP:GQ:PL	0/1:176,38:214:99:788,0,6855
1	17083671	rs1057420	C	G	6794.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=-0.368;DB;DP=203;FS=5.529;MQ=43.26;MQRankSum=1.489;QD=8.58;ReadPosRankSum=-2.760;SOR=0.164	GT:AD:DP:GQ:PL	0/1:113,90:203:99:3327,0,4893
1	17083685	rs3197973	C	A	6583.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=-0.391;DB;DP=192;FS=7.371;MQ=42.48;MQRankSum=1.065;QD=8.45;ReadPosRankSum=-2.066;SOR=0.182	GT:AD:DP:GQ:PL	0/1:110,82:192:99:3124,0,4781
1	17083776	rs56318124	C	A	1902.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.398;ClippingRankSum=0.490;DB;DP=114;FS=29.322;MQ=35.94;MQRankSum=-5.942;QD=3.81;ReadPosRankSum=0.739;SOR=0.123	GT:AD:DP:GQ:PL	0/1:86,28:114:99:675,0,3349
1	17083778	rs28455793	C	T	6881.92	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.088;ClippingRankSum=-0.890;DB;DP=112;FS=88.587;MQ=35.97;MQRankSum=-1.192;QD=13.65;ReadPosRankSum=2.133;SOR=4.551	GT:AD:DP:GQ:PL	0/1:52,60:112:99:2005,0,1910
1	17083807	rs9286084	T	C	15346.16	SNP_MappingQuality;SNP_StrandBias;SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.992;ClippingRankSum=-1.516;DB;DP=125;FS=103.497;MQ=35.90;MQRankSum=-9.358;QD=26.32;ReadPosRankSum=2.838;SOR=4.028	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4927,376,0
1	17083808	rs140260478	G	A	263.13	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.153;ClippingRankSum=-1.350;DB;DP=129;FS=6.444;MQ=35.80;MQRankSum=-8.425;QD=1.02;ReadPosRankSum=-0.222;SOR=0.208	GT:AD:DP:GQ:PL	0/0:120,9:129:62:0,62,5251
1	17083816	rs11260920	G	A	101.13	SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=3.491;ClippingRankSum=1.402;DB;DP=150;FS=4.363;MQ=35.27;MQRankSum=-7.536;QD=0.36;ReadPosRankSum=1.346;SOR=0.259	GT:AD:DP:GQ:PL	0/0:141,9:150:99:0,116,5947
1	17083837	rs7798	T	C	3236.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.841;ClippingRankSum=0.304;DB;DP=211;FS=14.519;MQ=35.62;MQRankSum=-3.487;QD=3.92;ReadPosRankSum=2.289;SOR=1.827	GT:AD:DP:GQ:PL	0/1:183,28:211:99:402,0,6721
1	17083872	rs61635893	G	A	17265.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.491;ClippingRankSum=0.711;DB;DP=279;FS=1.766;MQ=35.31;MQRankSum=-4.213;QD=15.63;ReadPosRankSum=2.176;SOR=0.538	GT:AD:DP:GQ:PL	0/1:156,123:279:99:3760,0,5290
1	17083888	rs75141545	C	T	5528.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.255;ClippingRankSum=-0.682;DB;DP=288;FS=9.278;MQ=35.10;MQRankSum=-2.266;QD=4.67;ReadPosRankSum=2.671;SOR=0.939	GT:AD:DP:GQ:PL	0/1:241,47:288:99:773,0,8797
1	17083919	rs143067724	G	A	1286.13	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=5.123;ClippingRankSum=0.191;DB;DP=287;FS=0.000;MQ=35.02;MQRankSum=0.136;QD=4.45;ReadPosRankSum=3.581;SOR=0.561	GT:AD:DP:GQ:PL	0/1:234,53:287:99:1317,0,8974
1	17083929	rs138589297	A	C	18162.92	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=1.066;DB;DP=268;FS=3.260;MQ=34.51;MQRankSum=-14.960;QD=16.22;ReadPosRankSum=4.731;SOR=0.997	GT:AD:DP:GQ:PL	0/1:118,150:268:99:4601,0,4009
1	17083984	rs71269410	C	T	2181.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=5.878;ClippingRankSum=1.144;DB;DP=295;FS=0.000;MQ=32.22;MQRankSum=3.903;QD=3.23;ReadPosRankSum=0.660;SOR=0.693	GT:AD:DP:GQ:PL	0/1:244,51:295:99:1006,0,8911
1	17084006	rs2446544	C	T	17179.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.421;ClippingRankSum=0.770;DB;DP=315;FS=4.079;MQ=32.37;MQRankSum=7.625;QD=15.98;ReadPosRankSum=0.772;SOR=1.286	GT:AD:DP:GQ:PL	0/1:140,175:315:99:6552,0,3903
1	17084021	rs2446543	C	G	4768.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.022;DB;DP=336;FS=3.735;MQ=33.00;MQRankSum=4.842;QD=4.27;ReadPosRankSum=2.359;SOR=1.233	GT:AD:DP:GQ:PL	0/1:243,93:336:99:2347,0,8911
1	17084152	rs202123117	C	T	559.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.737;ClippingRankSum=-0.110;DB;DP=606;FS=0.000;MQ=37.45;MQRankSum=0.527;QD=0.76;ReadPosRankSum=-1.370;SOR=0.552	GT:AD:DP:GQ:PL	0/0:604,2:606:99:0,1763,22726
1	17084304	.	C	T	960.13	SNP_LowQualityDepth;SNP_MQRankSumLow	AC=0;AF=0.00;AN=2;BaseQRankSum=3.621;ClippingRankSum=0.405;DP=556;FS=7.082;MQ=47.18;MQRankSum=-21.282;QD=1.21;ReadPosRankSum=0.982;SOR=1.858	GT:AD:DP:GQ:PL	0/0:518,38:556:99:0,490,20540
1	17084670	rs199536872	A	G	5447.92	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=1.067;DB;DP=201;FS=12.080;MQ=37.34;MQRankSum=-16.336;QD=7.26;ReadPosRankSum=-0.053;SOR=1.634	GT:AD:DP:GQ:PL	0/1:117,84:201:99:2084,0,3969
1	17084755	rs140682808	T	C	3255.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=1.179;DB;DP=213;FS=7.431;MQ=47.40;MQRankSum=-16.077;QD=4.80;ReadPosRankSum=1.211;SOR=0.307	GT:AD:DP:GQ:PL	0/1:157,56:213:99:1321,0,5809
1	17084815	rs11260922	G	A	16099.13	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.321;DB;DP=151;FS=43.525;MQ=39.14;MQRankSum=5.091;QD=30.32;ReadPosRankSum=-1.068;SOR=0.772	GT:AD:DP:GQ:PL	1/1:13,138:151:47:4569,47,0
1	17084948	rs199741699	A	C	997.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.275;DB;DP=238;FS=1.459;MQ=36.07;MQRankSum=0.438;QD=3.69;ReadPosRankSum=-1.675;SOR=0.383	GT:AD:DP:GQ:PL	0/0:238,0:238:99:0,712,8301
1	17084968	rs2761533	G	C	17708.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=6.249;ClippingRankSum=1.983;DB;DP=312;FS=1.365;MQ=37.77;MQRankSum=-1.515;QD=16.46;ReadPosRankSum=0.236;SOR=0.586	GT:AD:DP:GQ:PL	0/1:156,156:312:99:4609,0,4751
1	17085006	rs201784242	C	T	521.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=2.161;ClippingRankSum=-0.150;DB;DP=359;FS=3.984;MQ=38.03;MQRankSum=0.633;QD=1.40;ReadPosRankSum=1.841;SOR=0.211	GT:AD:DP:GQ:PL	0/0:359,0:359:99:0,1078,12975
1	17085165	rs2490828	G	C	34844.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;ClippingRankSum=0.619;DB;DP=228;FS=0.000;MQ=32.73;MQRankSum=-1.732;QD=32.94;ReadPosRankSum=0.054;SOR=0.234	GT:AD:DP:GQ:PL	1/1:0,228:228:99:8685,705,0
1	17085168	rs199962909	A	T	151.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=0.403;ClippingRankSum=-0.065;DB;DP=262;FS=0.000;MQ=33.39;MQRankSum=1.318;QD=0.46;ReadPosRankSum=-1.422;SOR=0.907	GT:AD:DP:GQ:PL	0/0:262,0:262:99:0,797,9838
1	17085171	rs3982157	T	TGG	2748.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;ClippingRankSum=-0.092;DB;DP=267;FS=0.000;MQ=33.96;MQRankSum=-3.063;QD=2.60;ReadPosRankSum=-3.629;SOR=0.771	GT:AD:DP:GQ:PL	0/1:225,42:267:99:973,0,8287
1	17085255	rs2281029	A	G	8332.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=-1.075;DB;DP=432;FS=8.856;MQ=46.80;MQRankSum=-17.653;QD=5.84;ReadPosRankSum=-4.923;SOR=1.392	GT:AD:DP:GQ:PL	0/1:357,75:432:99:1474,0,13951
1	17085265	rs2490829	T	C	15515.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.444;ClippingRankSum=1.989;DB;DP=410;FS=23.454;MQ=48.23;MQRankSum=-28.103;QD=11.97;ReadPosRankSum=-4.811;SOR=1.867	GT:AD:DP:GQ:PL	0/1:271,139:410:99:4277,0,10827
1	17085267	rs2077142	A	G	18690.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=2.244;DB;DP=388;FS=22.244;MQ=48.74;MQRankSum=-26.807;QD=15.30;ReadPosRankSum=-1.837;SOR=1.926	GT:AD:DP:GQ:PL	0/1:265,123:388:99:4984,0,10554
1	17085412	rs872964	C	T	19316.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=5.858;ClippingRankSum=-1.121;DB;DP=616;FS=10.386;MQ=43.14;MQRankSum=-18.269;QD=8.57;ReadPosRankSum=-1.094;SOR=1.410	GT:AD:DP:GQ:PL	0/1:434,182:616:99:4594,0,16874
1	17085427	rs2002186	T	C	50322.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=7.509;ClippingRankSum=-0.681;DB;DP=627;FS=5.098;MQ=44.36;MQRankSum=-31.549;QD=21.39;ReadPosRankSum=3.830;SOR=1.083	GT:AD:DP:GQ:PL	0/1:269,358:627:99:13115,0,9176
1	17085502	rs2329006	T	C	50672.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.988;ClippingRankSum=-0.256;DB;DP=590;FS=10.110;MQ=40.04;MQRankSum=1.802;QD=23.56;ReadPosRankSum=-2.704;SOR=0.504	GT:AD:DP:GQ:PL	0/1:155,435:590:99:15465,0,4086
1	17085542	rs2261754	G	A	9090.92	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=6.148;ClippingRankSum=0.240;DB;DP=472;FS=3.097;MQ=37.78;MQRankSum=-15.043;QD=5.37;ReadPosRankSum=-2.196;SOR=0.450	GT:AD:DP:GQ:PL	0/1:392,80:472:99:1469,0,15625
1	17085564	rs3851921	A	G	16191.92	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=7.810;ClippingRankSum=0.777;DB;DP=481;FS=0.000;MQ=39.35;MQRankSum=-25.856;QD=9.30;ReadPosRankSum=1.870;SOR=0.696	GT:AD:DP:GQ:PL	0/1:383,98:481:99:2722,0,14406
1	17085589	.	AGCGCTG	A	5707.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.362;ClippingRankSum=0.034;DP=520;FS=2.012;MQ=39.53;MQRankSum=-13.725;QD=2.96;ReadPosRankSum=-1.129;SOR=1.007	GT:AD:DP:GQ:PL	0/1:444,76:520:99:1754,0,18251
1	17085671	rs3863806	C	G	13923.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=9.695;ClippingRankSum=-0.601;DB;DP=420;FS=30.469;MQ=39.62;MQRankSum=-9.026;QD=9.68;ReadPosRankSum=2.469;SOR=3.073	GT:AD:DP:GQ:PL	0/1:323,97:420:99:3149,0,11363
1	17085677	rs3863805	G	A	10433.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=5.166;ClippingRankSum=-0.151;DB;DP=400;FS=39.535;MQ=39.64;MQRankSum=-8.353;QD=7.48;ReadPosRankSum=1.605;SOR=3.608	GT:AD:DP:GQ:PL	0/1:300,100:400:99:2566,0,14673
1	17085712	rs3863803	C	T	8887.92	SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=2.043;DB;DP=370;FS=65.120;MQ=40.10;MQRankSum=-3.744;QD=7.11;ReadPosRankSum=0.481;SOR=4.580	GT:AD:DP:GQ:PL	0/1:276,94:370:99:2502,0,10116
1	17085795	rs1057379	G	T	3400.92	SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=4.307;ClippingRankSum=0.957;DB;DP=285;FS=67.602;MQ=40.10;MQRankSum=-7.117;QD=3.44;ReadPosRankSum=3.830;SOR=6.418	GT:AD:DP:GQ:PL	0/1:230,55:285:99:1201,0,8580
1	17085834	rs2005622	G	T	30635.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=220;FS=0.000;MQ=44.65;QD=30.64;SOR=1.156	GT:AD:DP:GQ:PL	1/1:0,220:220:99:9449,673,0
1	17085908	rs1805293	C	G	1237.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=-0.282;DB;DP=196;FS=2.130;MQ=47.96;MQRankSum=-7.802;QD=3.38;ReadPosRankSum=-0.213;SOR=1.041	GT:AD:DP:GQ:PL	0/1:165,31:196:99:590,0,5855
1	17085995	.	G	GC	4355.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=1.866;DP=155;FS=1.512;MQ=46.85;MQRankSum=-8.440;QD=7.72;ReadPosRankSum=-1.372;SOR=0.479	GT:AD:DP:GQ:PL	0/1:91,64:155:99:1504,0,2284
1	17086052	rs1057286	T	C	6688.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MQ=43.04;QD=29.28;SOR=3.339	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1869,143,0
1	17086085	rs200532237	G	GC	2118.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.000;MQ=37.51;QD=30.71;SOR=5.247	GT:AD:DP:GQ:PL	1/1:0,14:14:45:527,45,0
1	17086217	.	C	G	1241.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=-0.402;DP=68;FS=3.256;MQ=36.83;MQRankSum=-4.473;QD=5.59;ReadPosRankSum=-0.382;SOR=0.970	GT:AD:DP:GQ:PL	0/1:58,10:68:99:138,0,2080
1	17086236	.	G	C	70.16	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.048;DP=53;FS=0.000;MQ=36.27;MQRankSum=0.583;QD=0.66;ReadPosRankSum=-0.691;SOR=0.472	GT:AD:DP:GQ:PL	0/1:47,6:53:56:56,0,1678
1	17086311	.	G	T	675.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.647;DP=20;FS=4.024;MQ=30.80;MQRankSum=-2.946;QD=10.24;ReadPosRankSum=-2.547;SOR=0.303	GT:AD:DP:GQ:PL	0/1:14,6:20:99:225,0,473
1	17086315	.	TC	T	322.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=-0.094;DP=21;FS=8.174;MQ=30.32;MQRankSum=-3.696;QD=4.75;ReadPosRankSum=-2.478;SOR=0.386	GT:AD:DP:GQ:PL	0/1:14,7:21:99:162,0,835
1	17086439	rs199717911	C	T	969.95	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.256;DB;DP=149;FS=11.629;MQ=26.63;MQRankSum=-0.731;QD=2.09;ReadPosRankSum=1.357;SOR=0.167	GT:AD:DP:GQ:PL	0/1:119,30:149:99:452,0,3190
1	17086450	rs200858362	C	G	5854.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;ClippingRankSum=0.954;DB;DP=128;FS=9.768;MQ=26.68;MQRankSum=-4.812;QD=14.39;ReadPosRankSum=0.175;SOR=1.572	GT:AD:DP:GQ:PL	0/1:81,47:128:99:1584,0,3012
1	17086464	rs201407059	T	C	5078.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.372;ClippingRankSum=0.519;DB;DP=108;FS=9.158;MQ=26.97;MQRankSum=-4.269;QD=15.07;ReadPosRankSum=-0.034;SOR=1.288	GT:AD:DP:GQ:PL	0/1:69,39:108:99:1425,0,2808
1	17086538	rs199530717	T	G	3058.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.000;MQ=28.78;QD=31.11;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,17:17:60:836,60,0
1	17086541	rs200649629	T	C	2107.17	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.647;DB;DP=22;FS=12.912;MQ=28.55;MQRankSum=1.532;QD=26.34;ReadPosRankSum=1.345;SOR=2.656	GT:AD:DP:GQ:PL	0/1:3,19:22:28:535,0,28
1	17086870	rs201604637	T	C	1925.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.934;ClippingRankSum=-1.134;DB;DP=412;FS=37.458;MQ=40.40;MQRankSum=-10.229;QD=2.31;ReadPosRankSum=0.963;SOR=6.853	GT:AD:DP:GQ:PL	0/1:339,73:412:99:1352,0,11543
1	17086941	rs28462251	C	T	2226.92	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.614;ClippingRankSum=1.014;DB;DP=349;FS=59.195;MQ=34.49;MQRankSum=1.917;QD=1.85;ReadPosRankSum=3.121;SOR=9.672	GT:AD:DP:GQ:PL	0/1:302,47:349:99:748,0,9920
1	17087072	rs79486936	G	A	23086.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=7.323;ClippingRankSum=-0.051;DB;DP=810;FS=15.344;MQ=48.95;MQRankSum=-26.996;QD=8.77;ReadPosRankSum=0.069;SOR=1.529	GT:AD:DP:GQ:PL	0/1:552,258:810:99:7878,0,20659
1	17087244	rs58502471	AC	A	2378.12	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=-1.115;DB;DP=691;FS=0.966;MQ=48.15;MQRankSum=5.716;QD=1.78;ReadPosRankSum=-0.406;SOR=0.538	GT:AD:DP:GQ:PL	0/1:590,101:691:99:1018,0,20224
1	17087262	rs2926375	C	T	28333.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.066;ClippingRankSum=1.508;DB;DP=754;FS=11.146;MQ=51.16;MQRankSum=-10.401;QD=11.66;ReadPosRankSum=-1.693;SOR=1.399	GT:AD:DP:GQ:PL	0/1:473,281:754:99:9003,0,17672
1	17087292	rs2179161	A	G	5107.93	SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.764;ClippingRankSum=-0.256;DB;DP=782;FS=47.394;MQ=55.90;MQRankSum=-26.359;QD=1.98;ReadPosRankSum=2.301;SOR=4.991	GT:AD:DP:GQ:PL	0/1:735,47:782:25:25,0,31248
1	17087299	rs2179162	T	C	7376.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.056;ClippingRankSum=-2.255;DB;DP=825;FS=26.803;MQ=55.93;MQRankSum=-29.114;QD=2.74;ReadPosRankSum=-1.074;SOR=2.593	GT:AD:DP:GQ:PL	0/1:759,66:825:99:600,0,32586
1	17087305	rs12046578	G	C	8259.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.473;ClippingRankSum=-0.071;DB;DP=819;FS=27.654;MQ=55.60;MQRankSum=-30.684;QD=3.05;ReadPosRankSum=-3.413;SOR=2.344	GT:AD:DP:GQ:PL	0/1:741,78:819:99:853,0,31746
1	17087365	rs2446556	C	G	72290.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.123;ClippingRankSum=0.672;DB;DP=821;FS=0.571;MQ=49.45;MQRankSum=-6.797;QD=25.93;ReadPosRankSum=1.049;SOR=0.714	GT:AD:DP:GQ:PL	0/1:208,613:821:99:22559,0,6294
1	17087432	rs2446554	G	T	10033.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.489;ClippingRankSum=-1.023;DB;DP=754;FS=3.453;MQ=50.22;MQRankSum=-26.743;QD=3.81;ReadPosRankSum=2.207;SOR=1.019	GT:AD:DP:GQ:PL	0/1:668,86:754:99:1155,0,25803
1	17087459	rs11576695	A	G	14809.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.500;ClippingRankSum=-0.435;DB;DP=751;FS=0.000;MQ=47.60;MQRankSum=5.109;QD=5.61;ReadPosRankSum=-0.271;SOR=0.687	GT:AD:DP:GQ:PL	0/1:560,191:751:99:5703,0,21671
1	17087465	rs11260924	G	A	21232.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.150;ClippingRankSum=-0.284;DB;DP=745;FS=1.974;MQ=46.62;MQRankSum=1.645;QD=8.18;ReadPosRankSum=1.170;SOR=0.528	GT:AD:DP:GQ:PL	0/1:577,168:745:99:4498,0,22108
1	17087521	rs11589598	G	A	13321.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.498;ClippingRankSum=-1.713;DB;DP=763;FS=1.494;MQ=43.21;MQRankSum=-8.051;QD=4.97;ReadPosRankSum=-0.214;SOR=0.546	GT:AD:DP:GQ:PL	0/1:579,184:763:99:5214,0,22574
1	17087531	.	G	A	3938.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;ClippingRankSum=0.616;DP=765;FS=1.011;MQ=44.45;MQRankSum=6.832;QD=2.04;ReadPosRankSum=1.394;SOR=0.900	GT:AD:DP:GQ:PL	0/1:662,103:765:99:1865,0,26466
1	17087541	rs56364660	GGTGCT	G	26351.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.150;ClippingRankSum=-1.470;DB;DP=768;FS=0.000;MQ=45.82;MQRankSum=-16.016;QD=9.80;ReadPosRankSum=-1.478;SOR=0.687	GT:AD:DP:GQ:PL	0/1:588,180:768:99:5717,0,24281
1	17087582	rs10907280	G	A	40321.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=6.593;ClippingRankSum=-1.180;DB;DP=639;FS=0.000;MQ=49.43;MQRankSum=-40.204;QD=17.98;ReadPosRankSum=2.640;SOR=0.749	GT:AD:DP:GQ:PL	0/1:340,299:639:99:10940,0,12597
1	17087593	rs12145944	C	T	9945.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=7.496;ClippingRankSum=-0.058;DB;DP=577;FS=1.765;MQ=49.47;MQRankSum=-18.508;QD=4.87;ReadPosRankSum=0.040;SOR=0.997	GT:AD:DP:GQ:PL	0/1:436,141:577:99:3894,0,17717
1	17087640	rs200412600	A	C	650.16	SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=1.776;ClippingRankSum=-0.475;DB;DP=412;FS=0.000;MQ=45.12;MQRankSum=-4.966;QD=0.66;ReadPosRankSum=1.358;SOR=0.531	GT:AD:DP:GQ:PL	0/0:412,0:412:99:0,1244,16967
1	17087682	rs9725203	A	G	5567.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.725;ClippingRankSum=-0.410;DB;DP=306;FS=0.000;MQ=39.28;MQRankSum=1.531;QD=5.31;ReadPosRankSum=-0.464;SOR=1.010	GT:AD:DP:GQ:PL	0/1:228,78:306:99:2169,0,8191
1	17091129	rs61769748	G	A	4414.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;ClippingRankSum=1.058;DB;DP=127;FS=10.449;MQ=46.69;MQRankSum=-0.337;QD=9.66;ReadPosRankSum=0.576;SOR=0.164	GT:AD:DP:GQ:PL	0/1:90,37:127:99:1162,0,3306
1	17197409	rs201203798	G	A	245.19	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.056;ClippingRankSum=-0.031;DB;DP=121;FS=0.000;MQ=39.03;MQRankSum=-5.954;QD=2.25;ReadPosRankSum=0.194;SOR=0.116	GT:AD:DP:GQ:PL	0/0:116,5:121:99:0,210,6511
1	17197418	.	T	C	3730.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=-0.425;DP=125;FS=2.730;MQ=40.12;MQRankSum=-13.541;QD=10.11;ReadPosRankSum=1.331;SOR=1.420	GT:AD:DP:GQ:PL	0/1:78,47:125:99:1302,0,2698
1	17197501	rs200315424	T	C	1298.77	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=3.732;ClippingRankSum=-0.391;DB;DP=110;FS=20.150;MQ=51.00;MQRankSum=-13.540;QD=3.18;ReadPosRankSum=5.825;SOR=2.930	GT:AD:DP:GQ:PL	0/1:100,10:110:1:1,0,3894
1	17197525	rs72907888	T	G	2439.92	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.455;DB;DP=121;FS=3.904;MQ=50.65;MQRankSum=-16.003;QD=4.88;ReadPosRankSum=-2.637;SOR=1.135	GT:AD:DP:GQ:PL	0/1:108,13:121:63:63,0,4257
1	17197563	rs7556482	G	T	3542.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.713;ClippingRankSum=-0.821;DB;DP=158;FS=4.983;MQ=49.39;MQRankSum=-15.258;QD=6.33;ReadPosRankSum=3.365;SOR=1.165	GT:AD:DP:GQ:PL	0/1:140,18:158:99:473,0,5857
1	17197571	rs76372883	G	A	5587.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;ClippingRankSum=1.924;DB;DP=180;FS=1.367;MQ=47.22;MQRankSum=-16.495;QD=9.06;ReadPosRankSum=-1.196;SOR=0.795	GT:AD:DP:GQ:PL	0/1:142,38:180:99:1312,0,6171
1	17197595	rs201521253	A	C	12650.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.034;DB;DP=241;FS=1.144;MQ=44.86;MQRankSum=-11.998;QD=15.22;ReadPosRankSum=-6.227;SOR=0.579	GT:AD:DP:GQ:PL	0/1:153,88:241:99:3282,0,6657
1	17197609	rs150993810	T	C	16657.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.064;ClippingRankSum=1.577;DB;DP=264;FS=0.522;MQ=45.18;MQRankSum=-6.525;QD=18.17;ReadPosRankSum=-3.240;SOR=0.640	GT:AD:DP:GQ:PL	0/1:152,112:264:99:4563,0,6272
1	17197610	rs200754171	G	A	3631.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;ClippingRankSum=-0.686;DB;DP=268;FS=0.000;MQ=45.26;MQRankSum=-2.419;QD=3.92;ReadPosRankSum=0.562;SOR=0.658	GT:AD:DP:GQ:PL	0/1:202,66:268:99:1677,0,8213
1	17197615	rs146936960	C	A	17320.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=-0.578;DB;DP=272;FS=0.519;MQ=45.49;MQRankSum=-4.129;QD=18.29;ReadPosRankSum=-1.345;SOR=0.733	GT:AD:DP:GQ:PL	0/1:149,123:272:99:4746,0,5931
1	17197619	rs113661539	A	G	17303.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=-0.866;DB;DP=266;FS=1.722;MQ=45.38;MQRankSum=-4.086;QD=18.71;ReadPosRankSum=-0.429;SOR=0.740	GT:AD:DP:GQ:PL	0/1:141,125:266:99:4796,0,5664
1	17197657	rs200163851	T	A	1457.92	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.259;DB;DP=269;FS=2.924;MQ=46.57;MQRankSum=-3.350;QD=1.49;ReadPosRankSum=0.336;SOR=0.454	GT:AD:DP:GQ:PL	0/1:235,34:269:99:552,0,9311
1	17197665	.	G	T	500.16	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.854;ClippingRankSum=-0.849;DP=267;FS=6.845;MQ=47.55;MQRankSum=-3.130;QD=0.78;ReadPosRankSum=1.604;SOR=0.590	GT:AD:DP:GQ:PL	0/1:235,32:267:99:307,0,9795
1	17197666	rs74055933	T	C	6387.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=-0.301;DB;DP=264;FS=6.241;MQ=47.64;MQRankSum=-6.138;QD=6.66;ReadPosRankSum=0.951;SOR=0.370	GT:AD:DP:GQ:PL	0/1:179,85:264:99:2615,0,7041
1	17197690	rs72642967	T	G	16533.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=1.295;DB;DP=205;FS=22.973;MQ=50.56;MQRankSum=-17.593;QD=22.05;ReadPosRankSum=0.776;SOR=0.161	GT:AD:DP:GQ:PL	0/1:102,103:205:99:4342,0,4050
1	17197694	rs72642969	G	A	15528.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.122;ClippingRankSum=-1.643;DB;DP=200;FS=30.634;MQ=50.71;MQRankSum=-18.184;QD=21.24;ReadPosRankSum=1.051;SOR=0.104	GT:AD:DP:GQ:PL	0/1:105,95:200:99:3866,0,4137
1	17197710	rs114564385	G	C	10831.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=-0.951;DB;DP=156;FS=50.668;MQ=50.86;MQRankSum=-18.990;QD=19.17;ReadPosRankSum=0.039;SOR=0.043	GT:AD:DP:GQ:PL	0/1:91,65:156:99:2452,0,3666
1	17197715	rs202012907	G	A	9260.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=2.167;DB;DP=148;FS=41.889;MQ=50.70;MQRankSum=-18.766;QD=17.71;ReadPosRankSum=0.324;SOR=0.050	GT:AD:DP:GQ:PL	0/1:93,55:148:99:2189,0,3682
1	17197725	rs75030124	C	G	2890.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.380;ClippingRankSum=1.727;DB;DP=159;FS=22.499;MQ=49.93;MQRankSum=-10.886;QD=5.68;ReadPosRankSum=-2.298;SOR=0.103	GT:AD:DP:GQ:PL	0/1:140,19:159:99:257,0,5640
1	17197758	rs143100028	C	G	4235.92	SNP_MQRankSumLow;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=-0.895;DB;DP=134;FS=3.746;MQ=47.18;MQRankSum=-13.080;QD=10.13;ReadPosRankSum=-3.612;SOR=0.192	GT:AD:DP:GQ:PL	0/1:98,36:134:99:1205,0,3897
1	17197764	rs150815118	G	A,C	2757.92	SnpCluster	AC=0,1;AF=0.00,0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=-0.594;DB;DP=125;FS=4.804;MQ=46.33;MQRankSum=-12.126;QD=7.20;ReadPosRankSum=-1.132;SOR=0.236	GT:AD:DP:GQ:PL	0/2:92,10,23:125:99:827,496,4440,0,3659,3920
1	17197771	rs139655267	G	A	3439.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.819;DB;DP=122;FS=10.431;MQ=45.35;MQRankSum=-11.472;QD=9.22;ReadPosRankSum=1.922;SOR=0.115	GT:AD:DP:GQ:PL	0/1:89,33:122:99:1150,0,3761
1	17197777	rs149102001	T	G	3581.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.735;ClippingRankSum=-0.131;DB;DP=116;FS=9.051;MQ=44.63;MQRankSum=-10.907;QD=9.71;ReadPosRankSum=2.824;SOR=0.096	GT:AD:DP:GQ:PL	0/1:85,31:116:99:1031,0,3686
1	17197779	rs138448635	G	A	3480.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.068;ClippingRankSum=0.727;DB;DP=116;FS=6.046;MQ=44.18;MQRankSum=-11.046;QD=9.48;ReadPosRankSum=3.657;SOR=0.161	GT:AD:DP:GQ:PL	0/1:88,28:116:99:980,0,3841
1	17197798	rs112783082	A	G	5528.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=-0.270;DB;DP=116;FS=16.522;MQ=41.26;MQRankSum=-6.071;QD=14.67;ReadPosRankSum=0.456;SOR=0.061	GT:AD:DP:GQ:PL	0/1:75,41:116:99:1520,0,3275
1	17197817	rs143935929	C	A	6253.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;ClippingRankSum=-2.201;DB;DP=116;FS=10.785;MQ=40.39;MQRankSum=-1.220;QD=16.24;ReadPosRankSum=-0.151;SOR=0.123	GT:AD:DP:GQ:PL	0/1:68,48:116:99:1838,0,2916
1	17197818	rs201954177	C	G	6223.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.926;ClippingRankSum=1.417;DB;DP=114;FS=8.630;MQ=40.40;MQRankSum=-1.038;QD=16.47;ReadPosRankSum=0.383;SOR=0.155	GT:AD:DP:GQ:PL	0/1:66,48:114:99:1802,0,2835
1	17198145	rs146740528	GAC	G	1286.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.156;DB;DP=89;FS=7.269;MQ=37.14;MQRankSum=-6.909;QD=5.07;ReadPosRankSum=-1.113;SOR=0.176	GT:AD:DP:GQ:PL	0/1:71,18:89:99:528,0,2894
1	17198174	.	T	C	15.26	LowQual;SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.141;DP=131;FS=27.297;MQ=34.86;MQRankSum=-3.626;QD=0.12;ReadPosRankSum=-1.286;SOR=0.014	GT:AD:DP:GQ:PL	0/1:118,13:131:46:46,0,3692
1	17198209	rs61768108	A	C	8937.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.303;ClippingRankSum=0.771;DB;DP=143;FS=3.520;MQ=33.45;MQRankSum=-11.073;QD=19.35;ReadPosRankSum=4.057;SOR=0.214	GT:AD:DP:GQ:PL	0/1:61,82:143:99:3240,0,2357
1	17198211	rs61768109	C	A	8934.92	SNP_MQRankSumLow;SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.391;DB;DP=144;FS=3.030;MQ=33.47;MQRankSum=-12.572;QD=19.30;ReadPosRankSum=4.426;SOR=0.267	GT:AD:DP:GQ:PL	0/1:62,82:144:99:3237,0,2385
1	17198215	rs61768117	A	C	8870.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.796;ClippingRankSum=-0.871;DB;DP=141;FS=1.421;MQ=33.38;MQRankSum=-11.827;QD=19.50;ReadPosRankSum=4.710;SOR=0.330	GT:AD:DP:GQ:PL	0/1:60,81:141:99:3198,0,2346
1	17198421	rs200583461	T	C	4539.92	SNP_MQRankSumLow;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;ClippingRankSum=-0.068;DB;DP=241;FS=31.072;MQ=33.94;MQRankSum=-14.219;QD=5.92;ReadPosRankSum=2.882;SOR=2.499	GT:AD:DP:GQ:PL	0/1:160,81:241:99:1766,0,5203
1	17198451	.	C	G	430.13	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.777;ClippingRankSum=-0.426;DP=199;FS=9.673;MQ=32.85;MQRankSum=-6.043;QD=2.16;ReadPosRankSum=3.870;SOR=2.605	GT:AD:DP:GQ:PL	0/1:175,24:199:99:461,0,7044
1	17198462	rs201608158	A	T	8062.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.999;ClippingRankSum=-0.706;DB;DP=181;FS=18.014;MQ=32.28;MQRankSum=-8.657;QD=12.84;ReadPosRankSum=5.324;SOR=1.864	GT:AD:DP:GQ:PL	0/1:100,81:181:99:3060,0,3779
1	17198469	rs200175847	A	C	6108.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=1.098;DB;DP=177;FS=7.607;MQ=31.82;MQRankSum=-5.808;QD=10.13;ReadPosRankSum=2.000;SOR=1.303	GT:AD:DP:GQ:PL	0/1:119,58:177:99:2011,0,4769
1	17198518	rs141922545	T	G	1422.16	SNP_MappingQuality;SNP_StrandBias	AC=2;AF=1.00;AN=2;BaseQRankSum=0.261;ClippingRankSum=-0.050;DB;DP=29;FS=174.342;MQ=39.53;MQRankSum=-11.453;QD=6.05;ReadPosRankSum=-2.527;SOR=2.852	GT:AD:DP:GQ:PL	1/1:0,29:29:87:926,87,0
1	17248500	rs6683035	A	G	6015.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.152;ClippingRankSum=-0.852;DB;DP=94;FS=0.597;MQ=60.00;MQRankSum=0.661;QD=27.60;ReadPosRankSum=1.297;SOR=0.751	GT:AD:DP:GQ:PL	1/1:0,94:94:99:4032,282,0
1	17248532	rs6586566	A	G	13277.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;FS=0.000;MQ=60.00;QD=33.91;SOR=2.452	GT:AD:DP:GQ:PL	1/1:0,102:102:99:4286,306,0
1	17249395	rs6586567	A	G	8612.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.187;ClippingRankSum=1.107;DB;DP=109;FS=1.925;MQ=60.00;MQRankSum=-1.186;QD=25.86;ReadPosRankSum=0.506;SOR=0.513	GT:AD:DP:GQ:PL	1/1:0,109:109:99:4657,327,0
1	17250573	rs3936146	T	C	1236.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.672;ClippingRankSum=-0.329;DB;DP=14;FS=0.000;MQ=60.00;MQRankSum=-0.224;QD=28.09;ReadPosRankSum=2.069;SOR=2.007	GT:AD:DP:GQ:PL	1/1:0,14:14:42:604,42,0
1	17251055	rs9435703	C	T	3340.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.535;ClippingRankSum=1.606;DB;DP=48;FS=0.000;MQ=60.00;MQRankSum=-0.490;QD=26.10;ReadPosRankSum=0.535;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2018,144,0
1	17256406	rs72644305	G	A	650.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951;ClippingRankSum=0.295;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=-0.131;QD=16.67;ReadPosRankSum=2.667;SOR=0.762	GT:AD:DP:GQ:PL	0/1:18,21:39:99:681,0,654
1	17263290	rs57442576	G	A	951.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.598;ClippingRankSum=1.488;DB;DP=25;FS=1.074;MQ=60.00;MQRankSum=-0.854;QD=23.78;ReadPosRankSum=2.995;SOR=0.452	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,1053
1	17264296	rs9435792	G	A	86.36	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.358;ClippingRankSum=-0.358;DB;DP=2;FS=0.000;MQ=56.86;MQRankSum=-1.231;QD=21.59;ReadPosRankSum=0.358;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
1	17264863	rs4275496	A	G	711.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.574;ClippingRankSum=-0.327;DB;DP=17;FS=0.000;MQ=57.35;MQRankSum=-4.129;QD=21.55;ReadPosRankSum=1.693;SOR=0.728	GT:AD:DP:GQ:PL	0/0:17,0:17:51:0,51,736
1	17264890	rs72644310	T	G	794.17	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.861;ClippingRankSum=1.065;DB;DP=10;FS=0.000;MQ=57.42;MQRankSum=-2.280;QD=17.65;ReadPosRankSum=0.748;SOR=0.387	GT:AD:DP:GQ:PL	0/0:10,0:10:30:0,30,431
1	17265171	rs4269814	A	G	1729.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.435;DB;DP=31;FS=9.195;MQ=59.86;MQRankSum=0.497;QD=22.75;ReadPosRankSum=-0.328;SOR=1.122	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1300
1	17265327	rs4269813	A	G	1550.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.629;ClippingRankSum=-2.184;DB;DP=26;FS=2.502;MQ=60.00;MQRankSum=-0.709;QD=17.22;ReadPosRankSum=0.857;SOR=0.483	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,1141
1	17265704	.	T	TGGGGGC	109.15	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.690;ClippingRankSum=1.646;DP=8;FS=2.058;MQ=59.30;MQRankSum=-0.903;QD=7.28;ReadPosRankSum=-2.814;SOR=0.307	GT:AD:DP:GQ:PL	0/0:8,0:8:24:0,24,617
1	17266355	.	G	GC	545.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=1.277;DP=20;FS=12.861;MQ=60.16;MQRankSum=-0.243;QD=13.63;ReadPosRankSum=-0.274;SOR=0.019	GT:AD:DP:GQ:PL	0/1:7,13:20:99:335,0,154
1	17266648	rs11203455	C	T	2201.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.270;ClippingRankSum=-0.473;DB;DP=50;FS=2.740;MQ=60.00;MQRankSum=-0.247;QD=18.50;ReadPosRankSum=-0.322;SOR=1.014	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,151,2197
1	17267302	rs6586577	A	G	1768.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.689;ClippingRankSum=0.065;DB;DP=27;FS=1.593;MQ=60.00;MQRankSum=-0.825;QD=20.80;ReadPosRankSum=2.541;SOR=0.504	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1066
1	17273493	rs7537563	A	C	1422.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.298;ClippingRankSum=1.842;DB;DP=34;FS=3.323;MQ=59.07;MQRankSum=-2.197;QD=19.22;ReadPosRankSum=2.064;SOR=0.376	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1485
1	17275102	rs12081151	C	G	878.17	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.301;ClippingRankSum=-1.000;DB;DP=11;FS=10.070;MQ=59.77;MQRankSum=-2.223;QD=22.52;ReadPosRankSum=0.165;SOR=1.418	GT:AD:DP:GQ:PL	0/0:11,0:11:33:0,33,480
1	17280022	rs78911909	A	T	804.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.060;ClippingRankSum=-0.598;DB;DP=17;FS=8.685;MQ=52.18;MQRankSum=-0.714;QD=17.48;ReadPosRankSum=0.743;SOR=2.101	GT:AD:DP:GQ:PL	0/0:17,0:17:51:0,51,2439
1	17280025	rs78271317	T	C	811.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.020;ClippingRankSum=-0.545;DB;DP=17;FS=8.519;MQ=51.45;MQRankSum=-0.269;QD=18.44;ReadPosRankSum=1.636;SOR=1.919	GT:AD:DP:GQ:PL	0/0:17,0:17:51:0,51,2439
1	17280045	rs74875673	T	C	793.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.641;ClippingRankSum=-0.298;DB;DP=12;FS=1.405;MQ=45.27;MQRankSum=0.988;QD=19.83;ReadPosRankSum=0.522;SOR=0.969	GT:AD:DP:GQ:PL	0/0:12,0:12:42:0,42,4343
1	17280051	.	T	C	706.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.098;ClippingRankSum=-2.247;DP=12;FS=0.000;MQ=42.86;MQRankSum=0.841;QD=19.62;ReadPosRankSum=1.161;SOR=0.743	GT:AD:DP:GQ:PL	0/0:12,0:12:39:0,39,4254
1	17280057	.	G	A	583.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.323;ClippingRankSum=-1.481;DP=12;FS=0.000;MQ=40.44;MQRankSum=0.373;QD=17.67;ReadPosRankSum=1.697;SOR=0.558	GT:AD:DP:GQ:PL	0/0:12,0:12:36:0,36,4309
1	17280061	.	G	T	541.16	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.229;ClippingRankSum=-0.373;DP=11;FS=1.864;MQ=39.55;MQRankSum=-0.084;QD=15.92;ReadPosRankSum=1.697;SOR=1.075	GT:AD:DP:GQ:PL	0/0:11,0:11:36:0,36,4398
1	17280074	.	AG	A	613.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.670;ClippingRankSum=1.313;DP=12;FS=1.896;MQ=39.00;MQRankSum=0.641;QD=16.57;ReadPosRankSum=-0.578;SOR=1.147	GT:AD:DP:GQ:PL	0/0:12,0:12:39:0,39,4740
1	17280077	.	CCA	C	529.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.025;ClippingRankSum=1.268;DP=13;FS=0.000;MQ=38.98;MQRankSum=-0.423;QD=15.12;ReadPosRankSum=0.080;SOR=0.661	GT:AD:DP:GQ:PL	0/0:13,0:13:39:0,39,4812
1	17280085	rs138768977	C	T	544.16	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=3.540;ClippingRankSum=0.315;DB;DP=13;FS=0.000;MQ=39.08;MQRankSum=0.819;QD=17.55;ReadPosRankSum=-0.869;SOR=1.226	GT:AD:DP:GQ:PL	0/0:13,0:13:39:0,39,4812
1	17280107	rs141676483	T	C	466.16	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.769;DB;DP=19;FS=0.000;MQ=38.54;MQRankSum=1.305;QD=16.65;ReadPosRankSum=-0.549;SOR=0.123	GT:AD:DP:GQ:PL	0/0:19,0:19:57:0,57,5695
1	17280118	rs142716836	G	T	463.16	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.085;ClippingRankSum=-0.232;DB;DP=19;FS=0.000;MQ=38.54;MQRankSum=0.159;QD=16.54;ReadPosRankSum=-0.817;SOR=0.123	GT:AD:DP:GQ:PL	0/0:19,0:19:57:0,57,5419
1	17280120	rs148783261	G	T	463.16	SNP_MappingQuality;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.057;ClippingRankSum=-0.260;DB;DP=19;FS=0.000;MQ=38.60;MQRankSum=1.846;QD=15.44;ReadPosRankSum=-1.030;SOR=0.134	GT:AD:DP:GQ:PL	0/0:19,0:19:57:0,57,5419
1	17281003	rs2076606	T	C	935.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.150;DB;DP=17;FS=0.000;MQ=60.00;MQRankSum=-1.030;QD=24.00;ReadPosRankSum=-0.990;SOR=0.818	GT:AD:DP:GQ:PL	1/1:0,17:17:51:732,51,0
1	17281759	rs199873043	C	CG	1500.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.162;ClippingRankSum=-0.993;DB;DP=46;FS=5.005;MQ=60.07;MQRankSum=-0.215;QD=13.76;ReadPosRankSum=0.239;SOR=1.173	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1405
1	17282425	rs2143808	G	A	1337.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.472;ClippingRankSum=-0.745;DB;DP=36;FS=0.000;MQ=60.00;MQRankSum=-0.113;QD=14.38;ReadPosRankSum=-0.045;SOR=0.723	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,108,1481
1	17282573	rs2273114	G	A	2589.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.050;DB;DP=78;FS=4.150;MQ=60.00;MQRankSum=0.004;QD=14.46;ReadPosRankSum=1.447;SOR=0.419	GT:AD:DP:GQ:PL	0/0:78,0:78:99:0,235,3345
1	17285022	rs12097969	A	G	1460.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.660;ClippingRankSum=-1.052;DB;DP=25;FS=0.000;MQ=60.00;MQRankSum=1.609;QD=20.86;ReadPosRankSum=-0.403;SOR=0.674	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,1083
1	17285298	rs41300134	C	T	1831.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.166;ClippingRankSum=-1.245;DB;DP=41;FS=2.483;MQ=60.00;MQRankSum=-1.129;QD=19.07;ReadPosRankSum=1.169;SOR=0.937	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,123,1759
1	17285464	rs56013652	A	G	848.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.260;ClippingRankSum=-0.806;DB;DP=21;FS=2.609;MQ=60.00;MQRankSum=0.860;QD=18.85;ReadPosRankSum=-0.340;SOR=0.125	GT:AD:DP:GQ:PL	0/0:21,0:21:62:0,62,840
1	17287414	rs2273113	T	C	124.21	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.182;DB;DP=3;FS=8.674;MQ=60.00;MQRankSum=1.516;QD=15.53;ReadPosRankSum=-0.061;SOR=0.027	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
1	17287639	rs2273112	C	T	597.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.609;ClippingRankSum=0.262;DB;DP=13;FS=1.219;MQ=60.00;MQRankSum=-1.422;QD=22.12;ReadPosRankSum=0.179;SOR=0.941	GT:AD:DP:GQ:PL	0/0:13,0:13:39:0,39,551
1	17292571	rs72639732	G	A	6602.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.153;DB;DP=150;FS=0.000;MQ=60.00;MQRankSum=1.142;QD=17.75;ReadPosRankSum=0.748;SOR=0.731	GT:AD:DP:GQ:PL	0/1:68,82:150:99:2930,0,2479
1	17295679	rs4920574	T	C	7321.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.558;DB;DP=83;FS=2.252;MQ=59.94;MQRankSum=-0.230;QD=30.89;ReadPosRankSum=0.430;SOR=0.964	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3310,247,0
1	17297289	rs9435656	C	T	1625.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;ClippingRankSum=2.673;DB;DP=22;FS=0.000;MQ=60.00;MQRankSum=-0.829;QD=29.56;ReadPosRankSum=1.601;SOR=1.112	GT:AD:DP:GQ:PL	1/1:0,22:22:66:973,66,0
1	17299014	rs6661019	A	C	2436.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;ClippingRankSum=-1.550;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=-0.145;QD=21.76;ReadPosRankSum=0.339;SOR=4.112	GT:AD:DP:GQ:PL	1/1:2,25:27:25:655,25,0
1	17301672	rs761423	T	C	7093.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.958;DB;DP=101;FS=3.998;MQ=60.00;MQRankSum=-1.392;QD=27.08;ReadPosRankSum=2.781;SOR=0.908	GT:AD:DP:GQ:PL	1/1:0,101:101:99:4332,304,0
1	17301780	rs761422	A	G	8094.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.528;DB;DP=128;FS=0.597;MQ=60.00;MQRankSum=0.369;QD=28.60;ReadPosRankSum=0.607;SOR=0.765	GT:AD:DP:GQ:PL	1/1:0,128:128:99:5491,385,0
1	17303589	rs2235932	C	T	14331.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.745;ClippingRankSum=-0.236;DB;DP=116;FS=1.486;MQ=60.00;MQRankSum=0.108;QD=33.88;ReadPosRankSum=2.265;SOR=0.555	GT:AD:DP:GQ:PL	1/1:0,116:116:99:4937,349,0
1	17303792	rs4920588	C	T	7624.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.545;DB;DP=63;FS=0.000;MQ=60.00;MQRankSum=-0.344;QD=30.93;ReadPosRankSum=-0.056;SOR=0.854	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2679,189,0
1	17306870	rs55750792	G	A	219.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.572;ClippingRankSum=-0.572;DB;DP=4;FS=0.000;MQ=60.00;MQRankSum=1.589;QD=27.94;ReadPosRankSum=0.000;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
1	17312592	rs15786	G	A	5648.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.269;DB;DP=137;FS=1.820;MQ=60.00;MQRankSum=1.073;QD=18.64;ReadPosRankSum=-0.014;SOR=0.827	GT:AD:DP:GQ:PL	0/0:137,0:137:99:0,412,5830
1	17312743	rs3170740	C	T	11898.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.338;DB;DP=107;FS=11.728;MQ=60.00;MQRankSum=-0.330;QD=34.09;ReadPosRankSum=0.533;SOR=0.263	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4492,321,0
1	17313157	rs2076605	G	A	4957.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.186;ClippingRankSum=-0.869;DB;DP=47;FS=8.979;MQ=60.00;MQRankSum=-2.429;QD=34.42;ReadPosRankSum=0.336;SOR=1.795	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1958,141,0
1	17313343	rs9435659	G	A	7094.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.136;ClippingRankSum=-0.994;DB;DP=63;FS=5.061;MQ=60.00;MQRankSum=0.150;QD=34.95;ReadPosRankSum=1.732;SOR=1.423	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2692,189,0
1	17313654	rs761421	C	T	9706.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.009;DB;DP=71;FS=0.000;MQ=59.95;MQRankSum=-1.412;QD=32.06;ReadPosRankSum=-0.953;SOR=0.719	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2916,212,0
1	17314942	rs9435662	G	A	9791.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.526;ClippingRankSum=-0.221;DB;DP=79;FS=9.995;MQ=59.91;MQRankSum=-0.511;QD=34.72;ReadPosRankSum=-0.050;SOR=1.906	GT:AD:DP:GQ:PL	1/1:0,79:79:99:3292,237,0
1	17319011	rs2076603	G	A	12890.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;ClippingRankSum=-0.250;DB;DP=104;FS=11.039;MQ=60.00;MQRankSum=0.467;QD=34.65;ReadPosRankSum=-0.840;SOR=0.295	GT:AD:DP:GQ:PL	1/1:0,104:104:99:4518,313,0
1	17319287	rs4920608	C	T	6053.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.583;DB;DP=52;FS=3.131;MQ=60.00;MQRankSum=0.350;QD=31.11;ReadPosRankSum=-0.260;SOR=1.514	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2146,155,0
1	17323449	rs9435736	T	C	2172.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.199;ClippingRankSum=-1.020;DB;DP=19;FS=2.611;MQ=60.00;MQRankSum=-0.481;QD=35.32;ReadPosRankSum=0.105;SOR=1.828	GT:AD:DP:GQ:PL	1/1:0,19:19:57:822,57,0
1	17328301	rs2871776	T	C	395.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.774;ClippingRankSum=-0.816;DB;DP=17;FS=0.000;MQ=60.00;MQRankSum=-0.067;QD=15.81;ReadPosRankSum=1.161;SOR=0.397	GT:AD:DP:GQ:PL	0/0:17,0:17:51:0,51,725
1	17331676	rs3738814	A	G	1078.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.502;ClippingRankSum=2.704;DB;DP=48;FS=3.812;MQ=60.00;MQRankSum=1.480;QD=17.67;ReadPosRankSum=1.160;SOR=0.373	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,2096
1	17345073	rs35394060	G	GC	317.62	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.107;ClippingRankSum=-0.322;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.967;QD=24.43;ReadPosRankSum=-0.322;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0
1	17345074	rs58577552	C	CG	61.62	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.107;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.537;QD=12.32;ReadPosRankSum=0.322;SOR=0.307	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,45
1	17345113	rs2746477	G	C	71.35	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=4;FS=0.000;MQ=60.00;MQRankSum=0.611;QD=7.93;ReadPosRankSum=0.611;SOR=0.307	GT:AD:DP:GQ:PL	0/0:4,0:4:12:0,12,177
1	17359386	rs10887990	T	C	5594.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.405;DB;DP=47;FS=1.818;MQ=60.00;MQRankSum=1.512;QD=27.45;ReadPosRankSum=1.663;SOR=1.414	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2021,141,0
1	17359676	rs1022580	C	A	9773.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.000;MQ=59.92;QD=31.30;SOR=3.452	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2967,210,0
1	17371152	rs12073028	T	C	3920.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.545;ClippingRankSum=-1.518;DB;DP=38;FS=2.962;MQ=60.00;MQRankSum=-0.075;QD=34.69;ReadPosRankSum=-0.310;SOR=2.038	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1652,114,0
1	17371223	rs2647169	C	T	926.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.702;ClippingRankSum=1.349;DB;DP=38;FS=2.590;MQ=60.00;MQRankSum=0.381;QD=23.15;ReadPosRankSum=0.326;SOR=0.352	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1634
1	17371494	rs9435745	C	T	2528.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;ClippingRankSum=1.111;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=0.110;QD=34.63;ReadPosRankSum=1.706;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1148,81,0
1	17380195	rs35029966	TC	T	197.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=-0.231;DB;DP=14;FS=0.000;MQ=60.00;MQRankSum=-0.144;QD=4.28;ReadPosRankSum=0.549;SOR=0.208	GT:AD:DP:GQ:PL	0/1:8,6:14:99:117,0,188
1	17380497	rs2746462	G	T	5580.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.000;MQ=60.00;QD=33.75;SOR=3.434	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1535,110,0
1	17395480	rs2076599	G	A	10150.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.824;ClippingRankSum=-1.153;DB;DP=97;FS=2.226;MQ=60.00;MQRankSum=0.649;QD=34.76;ReadPosRankSum=0.498;SOR=0.387	GT:AD:DP:GQ:PL	1/1:0,97:97:99:4093,291,0
1	17395521	rs2076598	G	A	12202.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.599;ClippingRankSum=-0.605;DB;DP=104;FS=0.000;MQ=60.00;MQRankSum=1.015;QD=28.72;ReadPosRankSum=1.207;SOR=0.761	GT:AD:DP:GQ:PL	1/1:0,104:104:99:4485,313,0
1	17396498	rs2076596	T	C	4130.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.090;ClippingRankSum=-0.424;DB;DP=36;FS=3.172;MQ=60.00;MQRankSum=0.712;QD=33.58;ReadPosRankSum=0.686;SOR=2.129	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1594,108,0
1	17396592	rs11581590	G	A	972.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=-1.143;DB;DP=67;FS=2.958;MQ=60.00;MQRankSum=0.183;QD=14.51;ReadPosRankSum=2.950;SOR=0.400	GT:AD:DP:GQ:PL	0/1:39,28:67:99:1003,0,1409
1	17396703	rs2076595	T	C	8901.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.095;ClippingRankSum=1.615;DB;DP=76;FS=0.000;MQ=60.00;MQRankSum=-0.160;QD=34.37;ReadPosRankSum=0.153;SOR=0.688	GT:AD:DP:GQ:PL	1/1:0,76:76:99:3184,227,0
1	17398066	rs875219	G	C	5549.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.00;QD=26.97;SOR=2.741	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1736,117,0
1	17398069	rs875218	T	C	5551.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.00;QD=31.45;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1738,117,0
1	17401283	rs3818041	C	T	5836.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.000;MQ=60.00;QD=29.32;SOR=7.039	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1855,129,0
1	17402116	rs3818035	G	T	17349.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;FS=0.000;MQ=60.00;QD=27.82;SOR=1.747	GT:AD:DP:GQ:PL	1/1:0,115:115:99:4923,345,0
1	17402135	rs3818034	T	C	18043.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;FS=0.000;MQ=60.00;QD=25.45;SOR=1.353	GT:AD:DP:GQ:PL	1/1:0,118:118:99:5003,353,0
1	17402159	rs3818033	G	A	20082.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;FS=0.000;MQ=60.00;QD=35.41;SOR=1.095	GT:AD:DP:GQ:PL	1/1:0,121:121:99:5183,363,0
1	17402255	rs3818032	C	T	19216.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;FS=0.000;MQ=60.00;QD=31.35;SOR=1.207	GT:AD:DP:GQ:PL	1/1:0,117:117:99:5102,352,0
1	17402347	rs2647205	C	T	15932.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;FS=0.000;MQ=60.00;QD=32.65;SOR=2.594	GT:AD:DP:GQ:PL	1/1:0,109:109:99:4702,328,0
1	17402418	rs3818031	A	G	11328.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MQ=60.00;QD=30.57;SOR=7.554	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2915,207,0
1	17405809	rs2057096	G	A	10530.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.000;MQ=60.00;QD=34.35;SOR=1.323	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2837,203,0
1	17405916	rs2057095	C	T	7817.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.000;MQ=60.00;QD=34.59;SOR=2.783	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2498,174,0
1	17405949	rs2057094	C	T	6764.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MQ=60.00;QD=29.89;SOR=3.940	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1991,144,0
1	17406015	rs2057093	C	T	4910.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.000;MQ=60.00;QD=32.95;SOR=9.541	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1576,108,0
1	17406045	rs2057092	C	T	4343.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;ClippingRankSum=1.171;DB;DP=37;FS=0.000;MQ=60.00;MQRankSum=0.841;QD=31.89;ReadPosRankSum=-1.006;SOR=7.922	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1574,111,0
1	17410364	rs1883913	G	A	7783.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.00;QD=31.37;SOR=3.172	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1876,134,0
1	17418883	rs2647184	A	G	10015.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.000;MQ=60.00;QD=33.64;SOR=4.235	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2716,184,0
1	17418894	rs2273111	A	G	10605.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.000;MQ=60.00;QD=27.85;SOR=3.620	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2746,187,0
1	17419066	rs11203298	T	C	12164.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.000;MQ=60.00;QD=31.15;SOR=2.419	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3419,245,0
1	17422226	rs2076609	C	T	11864.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.000;MQ=60.00;QD=33.72;SOR=9.847	GT:AD:DP:GQ:PL	1/1:0,79:79:99:3459,238,0
1	17422302	rs2076608	T	C	15950.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;FS=0.000;MQ=60.00;QD=28.04;SOR=2.809	GT:AD:DP:GQ:PL	1/1:0,108:108:99:4516,324,0
1	17431277	rs6701159	G	T	3696.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.000;MQ=60.00;QD=29.38;SOR=4.929	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1040,72,0
1	17431618	rs11203300	A	G	5418.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.000;MQ=60.00;QD=25.11;SOR=3.776	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1581,111,0
1	17431681	rs2647172	C	A	4813.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.000;MQ=60.00;QD=27.91;SOR=6.630	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1391,96,0
1	17531582	rs2293910	G	A	3355.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.115;ClippingRankSum=-0.508;DB;DP=53;FS=0.000;MQ=60.00;MQRankSum=0.654;QD=26.22;ReadPosRankSum=1.041;SOR=1.073	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2286,160,0
1	17550225	rs3003481	T	C	6655.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.000;MQ=60.00;QD=36.17;SOR=0.706	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2132,147,0
1	17550303	rs2293913	T	C	2196.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.264;DB;DP=37;FS=1.641;MQ=60.00;MQRankSum=0.301;QD=25.25;ReadPosRankSum=0.408;SOR=0.507	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1594,111,0
1	17551034	rs2293915	A	T	5829.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=-0.047;DB;DP=60;FS=0.000;MQ=60.00;MQRankSum=-2.995;QD=27.24;ReadPosRankSum=1.939;SOR=0.953	GT:AD:DP:GQ:PL	0/1:31,29:60:99:1058,0,1146
1	17552875	rs2977290	A	G	5200.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.000;MQ=60.00;QD=27.29;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1786,123,0
1	17555316	rs2977233	C	G	1602.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.594;ClippingRankSum=-0.182;DB;DP=49;FS=7.727;MQ=60.00;MQRankSum=0.615;QD=16.02;ReadPosRankSum=1.857;SOR=1.387	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,146,1955
1	17555508	rs2977234	G	T	2070.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.882;DB;DP=50;FS=0.632;MQ=60.00;MQRankSum=0.051;QD=18.65;ReadPosRankSum=0.693;SOR=0.790	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2015
1	17557039	rs10888010	T	C	1053.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;ClippingRankSum=-0.734;DB;DP=73;FS=0.000;MQ=59.90;MQRankSum=0.520;QD=14.43;ReadPosRankSum=-0.971;SOR=0.743	GT:AD:DP:GQ:PL	0/1:43,30:73:99:1084,0,1642
1	17557133	rs3003406	A	C	1295.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;ClippingRankSum=1.621;DB;DP=103;FS=6.502;MQ=60.00;MQRankSum=-1.325;QD=12.45;ReadPosRankSum=1.722;SOR=1.227	GT:AD:DP:GQ:PL	0/1:64,39:103:99:1326,0,2416
1	17557178	rs2977235	C	T	1204.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=-0.638;DB;DP=94;FS=2.266;MQ=60.00;MQRankSum=-0.107;QD=12.81;ReadPosRankSum=-0.785;SOR=0.509	GT:AD:DP:GQ:PL	0/1:59,35:94:99:1235,0,2295
1	17557310	rs3003407	G	A	995.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=-0.721;DB;DP=78;FS=0.000;MQ=60.00;MQRankSum=0.165;QD=12.76;ReadPosRankSum=0.921;SOR=0.422	GT:AD:DP:GQ:PL	0/1:49,29:78:99:1026,0,1888
1	17559196	rs4268393	T	C	1603.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=1.630;DB;DP=81;FS=16.290;MQ=60.00;MQRankSum=0.463;QD=19.79;ReadPosRankSum=-0.410;SOR=0.031	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1634,0,1332
1	17563967	rs2977306	T	C	1080.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=-1.386;DB;DP=62;FS=0.761;MQ=60.00;MQRankSum=0.638;QD=17.42;ReadPosRankSum=1.511;SOR=0.775	GT:AD:DP:GQ:PL	0/1:32,30:62:99:1111,0,1225
1	17564990	rs2977310	T	C	559.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=-0.359;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=0.113;QD=18.04;ReadPosRankSum=2.502;SOR=0.166	GT:AD:DP:GQ:PL	0/1:15,16:31:99:590,0,559
1	17566041	rs41265087	C	A	342.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=-0.114;DB;DP=37;FS=5.035;MQ=60.00;MQRankSum=0.932;QD=9.25;ReadPosRankSum=-1.362;SOR=0.039	GT:AD:DP:GQ:PL	0/1:26,11:37:99:373,0,1012
1	17570286	rs2977222	T	C	1203.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;ClippingRankSum=-0.128;DB;DP=71;FS=0.000;MQ=60.00;MQRankSum=1.206;QD=16.95;ReadPosRankSum=2.413;SOR=0.712	GT:AD:DP:GQ:PL	0/1:38,33:71:99:1234,0,1354
1	17570466	rs2293921	T	C	1934.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.967;ClippingRankSum=0.005;DB;DP=109;FS=3.492;MQ=60.00;MQRankSum=-0.778;QD=17.74;ReadPosRankSum=1.616;SOR=0.946	GT:AD:DP:GQ:PL	0/1:56,53:109:99:1965,0,2109
1	17570767	rs41300110	C	G	1799.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.949;ClippingRankSum=-0.343;DB;DP=105;FS=6.024;MQ=60.00;MQRankSum=0.251;QD=17.13;ReadPosRankSum=3.541;SOR=0.275	GT:AD:DP:GQ:PL	0/1:53,52:105:99:1830,0,1960
1	17592121	rs72646775	T	C	1426.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.983;ClippingRankSum=-1.674;DB;DP=60;FS=0.000;MQ=60.00;MQRankSum=-0.855;QD=23.38;ReadPosRankSum=0.043;SOR=0.737	GT:AD:DP:GQ:PL	0/1:22,38:60:99:1457,0,732
1	17593144	rs2272628	C	G	1073.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.197;DB;DP=81;FS=0.000;MQ=60.00;MQRankSum=-0.117;QD=13.25;ReadPosRankSum=0.803;SOR=0.547	GT:AD:DP:GQ:PL	0/1:49,32:81:99:1104,0,1847
1	17594263	rs4262593	T	C	2399.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.103;ClippingRankSum=-0.437;DB;DP=123;FS=2.330;MQ=60.00;MQRankSum=-0.099;QD=19.51;ReadPosRankSum=1.438;SOR=0.209	GT:AD:DP:GQ:PL	0/1:59,64:123:99:2430,0,2191
1	17594592	rs4339902	G	A	1465.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=1.070;DB;DP=92;FS=0.000;MQ=60.00;MQRankSum=-0.112;QD=15.93;ReadPosRankSum=1.699;SOR=0.096	GT:AD:DP:GQ:PL	0/1:51,41:92:99:1496,0,1945
1	17596980	.	CA	C,CAA	248.88	INDEL_LowQualityDepth	AC=1,0;AF=0.500,0.00;AN=2;BaseQRankSum=-0.538;ClippingRankSum=-0.600;DP=56;FS=0.000;MQ=60.05;MQRankSum=-0.068;QD=1.23;ReadPosRankSum=-1.800;SOR=0.738	GT:AD:DP:GQ:PL	0/1:45,10,1:56:74:74,0,1039,211,996,1287
1	17597181	rs10888013	A	G	744.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.386;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=-0.207;QD=17.72;ReadPosRankSum=0.232;SOR=0.758	GT:AD:DP:GQ:PL	0/1:20,22:42:99:775,0,713
1	17597314	rs3215408	T	TC	373.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=-0.496;DB;DP=42;FS=4.054;MQ=60.00;MQRankSum=-1.135;QD=7.94;ReadPosRankSum=-1.886;SOR=0.168	GT:AD:DP:GQ:PL	0/1:24,18:42:99:413,0,622
1	17597721	rs4595409	A	G	847.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;ClippingRankSum=0.648;DB;DP=40;FS=0.000;MQ=60.00;MQRankSum=0.012;QD=21.18;ReadPosRankSum=-0.270;SOR=0.177	GT:AD:DP:GQ:PL	0/1:17,23:40:99:878,0,609
1	17600822	rs11203346	A	G	629.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.308;ClippingRankSum=1.529;DB;DP=26;FS=0.000;MQ=60.00;MQRankSum=-0.222;QD=24.20;ReadPosRankSum=-0.007;SOR=0.102	GT:AD:DP:GQ:PL	0/1:9,17:26:99:660,0,314
1	17601083	rs2293917	C	T	1050.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=-0.311;DB;DP=59;FS=2.937;MQ=60.00;MQRankSum=-1.139;QD=17.80;ReadPosRankSum=-0.191;SOR=1.060	GT:AD:DP:GQ:PL	0/1:28,31:59:99:1081,0,1053
1	17601165	rs11585357	C	T	1308.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.756;ClippingRankSum=0.353;DB;DP=72;FS=4.281;MQ=60.00;MQRankSum=-0.447;QD=18.17;ReadPosRankSum=3.130;SOR=1.067	GT:AD:DP:GQ:PL	0/1:36,36:72:99:1339,0,1227
1	17603472	rs72646785	G	T	453.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=-0.535;DB;DP=23;FS=2.068;MQ=60.00;MQRankSum=0.835;QD=18.88;ReadPosRankSum=0.278;SOR=0.202	GT:AD:DP:GQ:PL	0/1:10,13:23:99:484,0,350
1	17604437	rs72646786	C	T	2991.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.062;ClippingRankSum=-0.090;DB;DP=50;FS=0.000;MQ=60.00;MQRankSum=-0.576;QD=20.21;ReadPosRankSum=0.617;SOR=0.665	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,151,2180
1	17607068	rs2272630	T	C	1210.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=-1.733;DB;DP=67;FS=4.841;MQ=60.00;MQRankSum=-0.765;QD=18.06;ReadPosRankSum=2.871;SOR=1.209	GT:AD:DP:GQ:PL	0/1:31,36:67:99:1241,0,1118
1	17609448	rs2293920	G	T	4765.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.626;ClippingRankSum=2.765;DB;DP=97;FS=10.007;MQ=60.00;MQRankSum=-1.668;QD=21.96;ReadPosRankSum=1.479;SOR=0.359	GT:AD:DP:GQ:PL	0/1:30,67:97:99:2576,0,1028
1	17635036	rs2501798	G	C	6735.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.000;MQ=60.00;QD=30.17;SOR=5.071	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2302,165,0
1	17635072	rs2501799	A	G	4989.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.00;QD=27.98;SOR=5.067	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1704,117,0
1	17635141	rs2477132	C	A	2381.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MQ=60.00;QD=35.51;SOR=6.701	GT:AD:DP:GQ:PL	1/1:0,23:23:69:992,69,0
1	17657534	rs11203366	G	A	1426.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.796;ClippingRankSum=-0.695;DB;DP=68;FS=3.043;MQ=60.00;MQRankSum=1.261;QD=20.97;ReadPosRankSum=2.889;SOR=0.487	GT:AD:DP:GQ:PL	0/1:28,40:68:99:1457,0,979
1	17657616	rs11203367	T	C	1355.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.358;DB;DP=65;FS=3.594;MQ=60.00;MQRankSum=-0.341;QD=20.85;ReadPosRankSum=3.251;SOR=1.068	GT:AD:DP:GQ:PL	0/1:28,37:65:99:1386,0,996
1	17660499	rs874881	G	C	1326.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.031;ClippingRankSum=0.410;DB;DP=68;FS=3.651;MQ=60.00;MQRankSum=-0.990;QD=19.22;ReadPosRankSum=1.293;SOR=0.391	GT:AD:DP:GQ:PL	0/1:32,36:68:99:1357,0,1110
1	17660660	rs874882	G	A	1216.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.278;ClippingRankSum=-0.136;DB;DP=68;FS=5.880;MQ=60.00;MQRankSum=0.128;QD=17.88;ReadPosRankSum=2.341;SOR=0.291	GT:AD:DP:GQ:PL	0/1:35,33:68:99:1247,0,1307
1	17660697	rs1548323	T	C	874.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.441;DB;DP=53;FS=4.692;MQ=60.00;MQRankSum=-0.867;QD=16.19;ReadPosRankSum=0.083;SOR=0.227	GT:AD:DP:GQ:PL	0/1:27,26:53:99:905,0,1021
1	17660802	rs34965359	A	AT,ATT	1171.88	PASS	AC=0,1;AF=0.00,0.500;AN=2;BaseQRankSum=-3.210;ClippingRankSum=-0.301;DB;DP=24;FS=0.000;MQ=59.87;MQRankSum=-0.048;QD=10.85;ReadPosRankSum=0.048;SOR=0.902	GT:AD:DP:GQ:PL	0/2:4,2,18:24:69:571,403,442,0,69,74
1	17661128	rs1555658	A	C	427.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=-0.916;DB;DP=23;FS=0.000;MQ=60.00;MQRankSum=0.019;QD=18.57;ReadPosRankSum=1.651;SOR=0.804	GT:AD:DP:GQ:PL	0/1:11,12:23:99:458,0,416
1	17661659	rs10667653	C	CAT	273.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=1.193;DB;DP=24;FS=0.000;MQ=60.46;MQRankSum=0.194;QD=10.92;ReadPosRankSum=0.342;SOR=0.154	GT:AD:DP:GQ:PL	0/1:14,10:24:99:313,0,473
1	17661805	rs1635594	A	G	680.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=-0.117;DB;DP=40;FS=3.383;MQ=60.00;MQRankSum=0.531;QD=17.00;ReadPosRankSum=0.507;SOR=1.221	GT:AD:DP:GQ:PL	0/1:21,19:40:99:711,0,806
1	17662541	rs1748034	A	C	728.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.354;DB;DP=63;FS=0.000;MQ=60.00;MQRankSum=0.392;QD=11.56;ReadPosRankSum=2.375;SOR=0.228	GT:AD:DP:GQ:PL	0/1:41,22:63:99:759,0,1536
1	17662639	rs2240340	T	C	1200.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=-1.480;DB;DP=92;FS=0.000;MQ=60.00;MQRankSum=-0.782;QD=12.90;ReadPosRankSum=2.273;SOR=0.577	GT:AD:DP:GQ:PL	0/1:56,36:92:99:1231,0,2061
1	17662662	rs1748033	T	C	1596.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;ClippingRankSum=-0.811;DB;DP=104;FS=1.577;MQ=60.00;MQRankSum=0.220;QD=15.35;ReadPosRankSum=0.506;SOR=0.528	GT:AD:DP:GQ:PL	0/1:59,45:104:99:1627,0,2251
1	17662751	rs1621005	C	G	1402.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.546;DB;DP=87;FS=6.090;MQ=60.00;MQRankSum=0.307;QD=16.12;ReadPosRankSum=-1.509;SOR=1.204	GT:AD:DP:GQ:PL	0/1:44,43:87:99:1433,0,1617
1	17662804	rs1748032	C	T	1522.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.232;ClippingRankSum=0.888;DB;DP=108;FS=0.000;MQ=60.00;MQRankSum=0.279;QD=14.09;ReadPosRankSum=1.117;SOR=0.647	GT:AD:DP:GQ:PL	0/1:65,43:108:99:1553,0,2388
1	17662907	rs1748031	A	T	1165.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.091;DB;DP=75;FS=3.692;MQ=60.00;MQRankSum=0.221;QD=15.54;ReadPosRankSum=1.661;SOR=0.414	GT:AD:DP:GQ:PL	0/1:41,34:75:99:1196,0,1415
1	17664235	rs63553560	T	C	200.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=1.086;DB;DP=13;FS=3.226;MQ=58.96;MQRankSum=-2.969;QD=15.40;ReadPosRankSum=1.279;SOR=0.122	GT:AD:DP:GQ:PL	0/1:7,6:13:99:231,0,276
1	17664239	rs1635588	A	G	200.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=-0.490;DB;DP=13;FS=3.336;MQ=58.99;MQRankSum=-3.057;QD=15.40;ReadPosRankSum=1.470;SOR=0.113	GT:AD:DP:GQ:PL	0/1:7,6:13:99:231,0,276
1	17664280	rs1635587	T	C	426.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.645;DB;DP=23;FS=0.000;MQ=59.32;MQRankSum=-2.382;QD=18.53;ReadPosRankSum=-1.178;SOR=0.460	GT:AD:DP:GQ:PL	0/1:11,12:23:99:457,0,407
1	17664329	rs1748025	C	G	276.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=-0.257;DB;DP=16;FS=0.000;MQ=59.87;MQRankSum=-2.225;QD=17.26;ReadPosRankSum=0.874;SOR=0.013	GT:AD:DP:GQ:PL	0/1:8,8:16:99:307,0,309
1	17664770	rs1635586	A	G	1076.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=-1.300;DB;DP=41;FS=0.000;MQ=60.00;MQRankSum=0.550;QD=25.62;ReadPosRankSum=-1.079;SOR=0.199	GT:AD:DP:GQ:PL	0/1:12,29:41:99:1107,0,391
1	17666095	rs1635578	T	C	373.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=-0.350;DB;DP=21;FS=0.000;MQ=60.00;MQRankSum=0.558;QD=17.77;ReadPosRankSum=1.150;SOR=0.124	GT:AD:DP:GQ:PL	0/1:10,11:21:99:404,0,363
1	17666508	rs11203368	C	T	647.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.202;DB;DP=34;FS=6.201;MQ=60.00;MQRankSum=-0.466;QD=19.03;ReadPosRankSum=-0.193;SOR=0.088	GT:AD:DP:GQ:PL	0/1:15,19:34:99:678,0,532
1	17666539	rs145829137	ACG	A	34.33	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.340;DB;DP=15;FS=0.000;MQ=60.00;MQRankSum=-1.945;QD=0.76;ReadPosRankSum=0.326;SOR=0.039	GT:AD:DP:GQ:PL	0/0:14,1:15:15:0,15,455
1	17666545	rs138621568	GCGCA	G	265.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=-1.931;DB;DP=18;FS=5.006;MQ=60.00;MQRankSum=0.644;QD=6.47;ReadPosRankSum=-0.016;SOR=0.048	GT:AD:DP:GQ:PL	0/1:7,11:18:99:302,0,249
1	17666547	rs1635575	G	A	515.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=-1.380;DB;DP=18;FS=3.493;MQ=60.00;MQRankSum=0.147;QD=9.21;ReadPosRankSum=-0.646;SOR=2.041	GT:AD:DP:GQ:PL	0/1:12,6:18:99:116,0,469
1	17668270	rs1748021	A	G	587.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=-1.041;DB;DP=29;FS=7.157;MQ=60.00;MQRankSum=1.132;QD=20.25;ReadPosRankSum=0.789;SOR=2.395	GT:AD:DP:GQ:PL	0/1:12,17:29:99:618,0,431
1	17668563	rs35903413	G	A	949.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=-0.247;DB;DP=53;FS=0.802;MQ=60.00;MQRankSum=-0.111;QD=17.91;ReadPosRankSum=1.762;SOR=0.555	GT:AD:DP:GQ:PL	0/1:26,27:53:99:980,0,913
1	17672642	rs41266003	C	T	610.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=1.098;DB;DP=46;FS=0.000;MQ=60.00;MQRankSum=-0.533;QD=13.26;ReadPosRankSum=-1.014;SOR=0.651	GT:AD:DP:GQ:PL	0/1:28,18:46:99:641,0,1062
1	17675889	rs1613767	T	G	270.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=60.00;QD=26.45;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
1	17681277	rs6683201	T	C	1260.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.957;DB;DP=40;FS=3.044;MQ=60.00;MQRankSum=1.325;QD=14.65;ReadPosRankSum=2.880;SOR=0.153	GT:AD:DP:GQ:PL	0/1:24,16:40:99:574,0,923
1	17683041	rs1635567	T	C	2106.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.173;ClippingRankSum=-0.963;DB;DP=58;FS=3.099;MQ=60.00;MQRankSum=-1.753;QD=15.37;ReadPosRankSum=0.286;SOR=0.462	GT:AD:DP:GQ:PL	0/1:27,31:58:99:1133,0,1001
1	17683157	rs1635566	A	G	1616.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=-1.336;DB;DP=43;FS=0.000;MQ=60.00;MQRankSum=-0.186;QD=16.84;ReadPosRankSum=0.843;SOR=0.653	GT:AD:DP:GQ:PL	0/1:22,21:43:99:787,0,790
1	17685174	rs2428735	T	C	3222.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=-0.210;DB;DP=88;FS=0.970;MQ=60.00;MQRankSum=0.341;QD=18.10;ReadPosRankSum=2.258;SOR=0.833	GT:AD:DP:GQ:PL	0/1:48,40:88:99:1443,0,1773
1	17685466	rs34481461	C	A	1015.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.642;ClippingRankSum=-0.503;DB;DP=50;FS=2.042;MQ=60.00;MQRankSum=0.032;QD=18.80;ReadPosRankSum=2.219;SOR=0.198	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2100
1	17689954	rs2477150	C	T	688.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.473;DB;DP=47;FS=0.000;MQ=60.00;MQRankSum=-0.618;QD=12.98;ReadPosRankSum=3.662;SOR=0.386	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,2006
1	17698725	rs1204873	C	T	669.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.826;DB;DP=46;FS=8.266;MQ=59.83;MQRankSum=-1.241;QD=16.73;ReadPosRankSum=1.660;SOR=0.128	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,2017
1	17698891	rs6700319	C	T	750.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.009;DB;DP=67;FS=4.641;MQ=59.96;MQRankSum=0.806;QD=12.50;ReadPosRankSum=1.443;SOR=1.313	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,201,2812
1	17698961	rs1204872	T	C	1091.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.127;ClippingRankSum=-0.389;DB;DP=45;FS=0.000;MQ=60.00;MQRankSum=-0.800;QD=19.14;ReadPosRankSum=0.565;SOR=0.557	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1925
1	17699017	rs6656582	A	G	799.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.942;ClippingRankSum=1.029;DB;DP=31;FS=5.556;MQ=60.00;MQRankSum=0.356;QD=18.58;ReadPosRankSum=1.209;SOR=0.191	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1318
1	17699463	rs1204869	C	T	1038.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.540;ClippingRankSum=-0.133;DB;DP=58;FS=1.285;MQ=60.00;MQRankSum=-2.229;QD=18.21;ReadPosRankSum=1.708;SOR=0.992	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,175,2524
1	17699509	rs3035576	G	GGTGA	1240.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.059;ClippingRankSum=-1.337;DB;DP=73;FS=0.841;MQ=60.00;MQRankSum=0.151;QD=19.68;ReadPosRankSum=-0.674;SOR=0.801	GT:AD:DP:GQ:PL	0/0:73,0:73:99:0,220,3266
1	17707601	rs6669650	T	C	1244.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.884;DB;DP=80;FS=0.666;MQ=60.00;MQRankSum=0.954;QD=16.59;ReadPosRankSum=4.522;SOR=0.793	GT:AD:DP:GQ:PL	0/0:80,0:80:99:0,239,3370
1	17707739	rs1204898	T	C	7922.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.000;MQ=60.00;QD=28.06;SOR=3.472	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2813,201,0
1	17707757	rs6664321	C	T	711.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.182;DB;DP=54;FS=14.322;MQ=60.00;MQRankSum=-1.464;QD=19.75;ReadPosRankSum=-0.788;SOR=0.043	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,166,2452
1	17707758	rs6703392	G	C	711.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.854;ClippingRankSum=-0.860;DB;DP=54;FS=10.832;MQ=60.00;MQRankSum=0.336;QD=20.32;ReadPosRankSum=-0.729;SOR=0.051	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,166,2452
1	17707798	rs10788668	C	T	5814.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MQ=60.00;QD=31.02;SOR=8.483	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2022,144,0
1	17708349	rs7556072	G	A	7357.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.162;ClippingRankSum=1.112;DB;DP=77;FS=0.000;MQ=60.00;MQRankSum=-1.416;QD=31.19;ReadPosRankSum=1.241;SOR=2.573	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3342,231,0
1	17714638	rs2762893	A	G	236.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.186;ClippingRankSum=0.380;DB;DP=26;FS=0.000;MQ=59.85;MQRankSum=0.418;QD=15.74;ReadPosRankSum=-0.057;SOR=0.059	GT:AD:DP:GQ:PL	0/0:26,0:26:78:0,78,1119
1	17714710	rs2762894	A	C	830.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.349;ClippingRankSum=-1.495;DB;DP=48;FS=0.000;MQ=59.93;MQRankSum=0.810;QD=17.66;ReadPosRankSum=-0.135;SOR=0.542	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,1988
1	17714864	rs6696295	T	C	1489.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.637;ClippingRankSum=0.959;DB;DP=77;FS=1.627;MQ=60.00;MQRankSum=-1.775;QD=19.86;ReadPosRankSum=1.265;SOR=0.877	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,232,3370
1	17715081	rs2526842	C	T	1823.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.209;DB;DP=85;FS=0.594;MQ=60.00;MQRankSum=1.779;QD=19.40;ReadPosRankSum=0.674;SOR=0.608	GT:AD:DP:GQ:PL	0/0:85,0:85:99:0,255,3597
1	17715135	rs2526841	T	C	1415.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.832;ClippingRankSum=-0.161;DB;DP=75;FS=0.660;MQ=60.00;MQRankSum=-0.500;QD=19.39;ReadPosRankSum=0.520;SOR=0.805	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,225,3131
1	17715475	rs2800688	T	C	651.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.146;DB;DP=22;FS=0.000;MQ=60.00;MQRankSum=-0.637;QD=17.14;ReadPosRankSum=0.637;SOR=0.339	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,911
1	17718418	rs72637462	C	T	2142.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;ClippingRankSum=0.621;DB;DP=18;FS=0.000;MQ=60.00;MQRankSum=0.766;QD=27.62;ReadPosRankSum=1.491;SOR=3.334	GT:AD:DP:GQ:PL	1/1:0,18:18:54:784,54,0
1	17718671	rs10709483	AG	A	5611.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.000;MQ=60.20;QD=34.43;SOR=0.868	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1677,141,0
1	17718750	rs12737852	C	T	742.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.682;ClippingRankSum=-0.223;DB;DP=30;FS=2.238;MQ=60.18;MQRankSum=-0.332;QD=21.20;ReadPosRankSum=0.607;SOR=1.386	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1277
1	17720391	rs6678552	G	A	8336.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.582;DB;DP=72;FS=5.206;MQ=60.00;MQRankSum=-0.683;QD=32.63;ReadPosRankSum=0.797;SOR=0.299	GT:AD:DP:GQ:PL	1/1:0,72:72:99:3111,217,0
1	17720439	rs6695849	T	C	11604.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;FS=0.000;MQ=60.00;QD=27.97;SOR=1.533	GT:AD:DP:GQ:PL	1/1:0,96:96:99:4079,288,0
1	17720615	rs10458537	A	C	13659.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;FS=0.000;MQ=60.07;QD=28.83;SOR=0.751	GT:AD:DP:GQ:PL	1/1:0,92:92:99:4010,277,0
1	17720686	rs34075690	AG	A	8910.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;FS=0.000;MQ=60.26;QD=30.10;SOR=0.821	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2936,277,0
1	17721388	rs6691485	C	T	3759.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.000;MQ=60.00;QD=25.87;SOR=7.591	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1072,75,0
1	17721695	.	GTTT	G,GTT	3435.86	PASS	AC=2,0;AF=1.00,0.00;AN=2;DP=31;FS=0.000;MQ=59.87;QD=25.64;SOR=5.969	GT:AD:DP:GQ:PL	1/1:0,31,0:31:92:1228,92,0,1248,105,1409
1	17721707	rs12239645	T	G	371.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.948;ClippingRankSum=-0.526;DB;DP=37;FS=2.206;MQ=59.85;MQRankSum=0.076;QD=13.25;ReadPosRankSum=-0.009;SOR=1.352	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,114,1614
1	17721715	.	G	T	464.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.179;DP=35;FS=5.163;MQ=59.82;MQRankSum=-0.577;QD=13.26;ReadPosRankSum=-2.029;SOR=0.127	GT:AD:DP:GQ:PL	0/1:20,15:35:99:495,0,730
1	17721721	rs147310450	TGA	T	2938.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.108;DB;DP=28;FS=0.000;MQ=59.93;MQRankSum=1.391;QD=33.39;ReadPosRankSum=1.496;SOR=0.710	GT:AD:DP:GQ:PL	1/1:0,28:28:93:1333,93,0
1	17723476	rs61476146	C	CCA	5771.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.878;ClippingRankSum=-0.061;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=-0.462;QD=33.83;ReadPosRankSum=-1.259;SOR=1.796	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1938,132,0
1	17723739	rs12129196	G	A	6818.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.795;DB;DP=60;FS=2.230;MQ=59.87;MQRankSum=-0.087;QD=28.33;ReadPosRankSum=0.574;SOR=0.337	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2648,181,0
1	17725011	rs1555663	T	C	304.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MQ=60.00;QD=33.85;SOR=1.402	GT:AD:DP:GQ:PL	1/1:0,4:4:12:178,12,0
1	17725358	rs57383037	C	G	3526.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MQ=60.00;QD=32.67;SOR=1.721	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1015,69,0
1	17728072	rs34167614	G	A	438.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.456;ClippingRankSum=-0.515;DB;DP=39;FS=5.360;MQ=60.00;MQRankSum=-0.071;QD=13.28;ReadPosRankSum=1.000;SOR=0.033	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1652
1	17728119	rs2526830	A	G	3503.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.000;MQ=60.00;QD=37.34;SOR=6.067	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1129,81,0
1	17728231	rs2526829	A	G	407.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=7;FS=0.000;MQ=60.00;MQRankSum=-0.290;QD=29.92;ReadPosRankSum=1.159;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,7:7:21:296,21,0
1	17733136	rs2800699	C	T	100.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=33.52;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
1	17733147	rs2762889	A	C	65.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=32.56;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,1:1:3:44,3,0
1	17736578	rs2762890	A	G	6302.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.00;QD=26.63;SOR=7.195	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1899,135,0
1	17738570	rs71014950	AC	A	1420.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.380;ClippingRankSum=0.733;DB;DP=86;FS=1.356;MQ=60.04;MQRankSum=0.008;QD=14.79;ReadPosRankSum=0.913;SOR=0.857	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,259,3056
1	17739586	rs942457	G	A	2467.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.208;DB;DP=38;FS=2.301;MQ=60.00;MQRankSum=-0.590;QD=19.90;ReadPosRankSum=-1.358;SOR=1.491	GT:AD:DP:GQ:PL	0/1:12,26:38:99:981,0,417
1	17739820	rs1075535	T	C	7353.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.000;MQ=60.00;QD=33.67;SOR=2.639	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2584,183,0
1	17740357	rs2003871	G	A	1274.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.351;DB;DP=57;FS=0.000;MQ=59.91;MQRankSum=-0.718;QD=21.24;ReadPosRankSum=1.773;SOR=0.707	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,171,2408
1	17752000	rs1324368	A	G	5284.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.405;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=-2.205;QD=33.87;ReadPosRankSum=0.740;SOR=1.252	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1607,114,0
1	17764606	.	C	T	376.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898;ClippingRankSum=-0.402;DP=25;FS=11.635;MQ=60.00;MQRankSum=-0.134;QD=15.05;ReadPosRankSum=-0.629;SOR=0.012	GT:AD:DP:GQ:PL	0/1:11,14:25:99:407,0,393
1	17764627	rs113663016	G	A	1830.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.242;ClippingRankSum=-0.392;DB;DP=21;FS=0.000;MQ=60.00;MQRankSum=0.392;QD=30.11;ReadPosRankSum=-1.473;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,21:21:66:911,66,0
1	17907505	rs11203423	A	G	3124.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=1.208;DB;DP=40;FS=7.496;MQ=60.00;MQRankSum=-0.242;QD=26.48;ReadPosRankSum=1.066;SOR=2.567	GT:AD:DP:GQ:PL	0/1:18,22:40:99:834,0,674
1	17907575	rs11203424	C	T	1204.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=1.049;DB;DP=20;FS=0.000;MQ=58.83;MQRankSum=-0.435;QD=21.50;ReadPosRankSum=1.425;SOR=0.368	GT:AD:DP:GQ:PL	0/1:11,9:20:99:341,0,418
1	17907607	rs10749622	C	T	1984.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MQ=58.57;QD=38.10;SOR=6.273	GT:AD:DP:GQ:PL	1/1:0,16:16:48:704,48,0
1	17913714	rs1193345	G	A	1522.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=-0.338;DB;DP=14;FS=0.000;MQ=60.00;MQRankSum=1.501;QD=32.39;ReadPosRankSum=1.392;SOR=0.593	GT:AD:DP:GQ:PL	0/1:9,5:14:99:174,0,267
1	17914057	rs34417109	G	A	1284.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.276;DB;DP=85;FS=1.375;MQ=60.00;MQRankSum=0.163;QD=15.11;ReadPosRankSum=1.744;SOR=0.537	GT:AD:DP:GQ:PL	0/1:47,38:85:99:1315,0,1735
1	17914122	rs35497285	G	A	1347.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.114;ClippingRankSum=-0.920;DB;DP=71;FS=2.664;MQ=60.00;MQRankSum=0.442;QD=18.97;ReadPosRankSum=2.970;SOR=0.451	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,213,2957
1	17914846	rs1193343	C	T	6174.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.721;ClippingRankSum=1.390;DB;DP=53;FS=1.929;MQ=60.00;MQRankSum=-1.367;QD=34.49;ReadPosRankSum=0.670;SOR=1.541	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2218,159,0
1	17929980	rs1193338	C	G	4385.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.115;ClippingRankSum=1.152;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=-1.537;QD=33.73;ReadPosRankSum=-0.394;SOR=1.112	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1649,117,0
1	17944934	rs139656107	C	T	2806.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.873;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=0.720;QD=21.59;ReadPosRankSum=-0.514;SOR=0.702	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,168,2354
1	17965194	rs2297916	G	A	4600.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.473;ClippingRankSum=1.031;DB;DP=62;FS=2.421;MQ=60.00;MQRankSum=1.094;QD=20.45;ReadPosRankSum=-0.108;SOR=1.115	GT:AD:DP:GQ:PL	0/1:27,35:62:99:1342,0,930
1	17991052	rs6695710	T	C	9098.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=60.00;QD=30.70;SOR=0.908	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2261,157,0
1	18017522	rs871087	T	C	7267.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=60.00;QD=28.13;SOR=3.886	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2014,138,0
1	18017558	rs871088	A	G	9460.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.000;MQ=60.00;QD=32.68;SOR=1.903	GT:AD:DP:GQ:PL	1/1:0,70:70:99:3007,211,0
1	18017704	rs871089	C	T	8367.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.000;MQ=60.00;QD=33.44;SOR=4.648	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2196,154,0
1	18021285	rs115552472	T	A	187.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.442;DB;DP=68;FS=1.889;MQ=60.00;MQRankSum=1.110;QD=4.25;ReadPosRankSum=2.001;SOR=0.262	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,205,2927
1	18021406	rs905389	T	C	12426.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.000;MQ=60.00;QD=27.79;SOR=1.434	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3869,273,0
1	18021867	rs2279816	T	C	4023.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.000;MQ=60.00;QD=28.97;SOR=9.129	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1271,90,0
1	18023154	rs4920620	A	G	5162.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.000;MQ=60.00;QD=35.73;SOR=6.770	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2481,172,0
1	18023290	rs2270979	C	T	8861.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.000;MQ=60.00;QD=31.07;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2999,210,0
1	18023365	rs2270978	C	T	11284.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;FS=0.000;MQ=60.00;QD=32.87;SOR=0.701	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3645,255,0
1	18023509	rs2270977	T	C	8342.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.000;MQ=60.00;QD=32.48;SOR=0.908	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2601,178,0
1	18023690	rs2270976	A	G	9211.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.000;MQ=60.00;QD=29.96;SOR=0.829	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2594,183,0
1	18023877	rs11589634	G	A	2566.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.205;DB;DP=35;FS=3.109;MQ=60.00;MQRankSum=0.040;QD=19.01;ReadPosRankSum=-1.114;SOR=0.467	GT:AD:DP:GQ:PL	0/1:16,19:35:99:673,0,568
1	18023997	rs3835471	G	GC	6191.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.000;MQ=60.33;QD=28.99;SOR=1.072	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2315,187,0
1	18149510	rs694214	G	T	7788.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;ClippingRankSum=0.540;DB;DP=140;FS=2.676;MQ=60.00;MQRankSum=-1.931;QD=17.50;ReadPosRankSum=-1.570;SOR=1.302	GT:AD:DP:GQ:PL	0/1:70,70:140:99:2582,0,2597
1	18149566	rs2296035	C	A	10063.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.919;DB;DP=186;FS=4.421;MQ=60.00;MQRankSum=0.949;QD=16.39;ReadPosRankSum=1.155;SOR=0.398	GT:AD:DP:GQ:PL	0/1:96,90:186:99:3188,0,3443
1	18152582	rs478698	C	T	5435.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.327;ClippingRankSum=-0.953;DB;DP=155;FS=3.616;MQ=60.00;MQRankSum=0.049;QD=16.57;ReadPosRankSum=2.848;SOR=0.457	GT:AD:DP:GQ:PL	0/0:155,0:155:99:0,465,6544
1	18294352	rs1192553	G	A	153.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=27.37;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	18434518	rs9660391	G	C	175.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.922;DB;DP=4;FS=0.000;MQ=60.00;MQRankSum=-1.495;QD=25.08;ReadPosRankSum=-1.495;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,2:4:75:75,0,77
1	18434981	rs11806559	T	C	260.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=-0.193;DB;DP=6;FS=0.000;MQ=60.00;MQRankSum=0.270;QD=13.05;ReadPosRankSum=1.427;SOR=0.392	GT:AD:DP:GQ:PL	0/1:2,4:6:71:159,0,71
1	18554345	rs61762155	T	C	2947.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.331;ClippingRankSum=0.708;DB;DP=80;FS=2.981;MQ=60.00;MQRankSum=-1.086;QD=15.43;ReadPosRankSum=2.163;SOR=0.981	GT:AD:DP:GQ:PL	0/1:43,37:80:99:1358,0,1524
1	18554356	rs3738087	C	T	3272.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.611;DB;DP=81;FS=8.366;MQ=60.00;MQRankSum=-0.270;QD=15.58;ReadPosRankSum=-0.174;SOR=1.227	GT:AD:DP:GQ:PL	0/1:45,36:81:99:1308,0,1695
1	18661583	rs536540	T	C	2334.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=-2.020;DB;DP=47;FS=0.000;MQ=60.00;MQRankSum=1.220;QD=19.45;ReadPosRankSum=-1.501;SOR=0.717	GT:AD:DP:GQ:PL	0/1:21,26:47:99:987,0,752
1	18702988	rs10796450	T	C	7666.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.000;MQ=60.00;QD=28.70;SOR=6.161	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1731,123,0
1	18703208	rs10796451	C	G	1796.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.164;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-0.492;QD=17.62;ReadPosRankSum=1.777;SOR=0.652	GT:AD:DP:GQ:PL	0/1:20,14:34:99:508,0,771
1	18704862	rs1043459	A	G	9303.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.491;DB;DP=67;FS=0.000;MQ=60.00;MQRankSum=1.159;QD=28.75;ReadPosRankSum=-0.439;SOR=0.693	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1384,0,930
1	18807339	rs2992756	T	C	755.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.907;DB;DP=23;FS=1.834;MQ=60.00;MQRankSum=0.493;QD=20.41;ReadPosRankSum=0.700;SOR=1.056	GT:AD:DP:GQ:PL	0/1:9,14:23:99:465,0,313
1	18807536	rs7512414	G	T	1648.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.517;DB;DP=46;FS=1.422;MQ=60.00;MQRankSum=0.339;QD=16.16;ReadPosRankSum=2.185;SOR=0.567	GT:AD:DP:GQ:PL	0/1:26,20:46:99:650,0,987
1	18807620	rs34109355	G	C	2018.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.015;DB;DP=65;FS=2.780;MQ=60.00;MQRankSum=0.306;QD=14.31;ReadPosRankSum=0.680;SOR=0.925	GT:AD:DP:GQ:PL	0/1:40,25:65:99:897,0,1508
1	18807755	rs34976233	G	A	2774.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;ClippingRankSum=1.602;DB;DP=76;FS=4.191;MQ=60.00;MQRankSum=0.885;QD=16.22;ReadPosRankSum=3.051;SOR=0.982	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1366,0,1333
1	18807781	rs35013594	C	T	3099.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=-0.021;DB;DP=90;FS=6.943;MQ=60.00;MQRankSum=1.819;QD=16.57;ReadPosRankSum=-0.364;SOR=1.135	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1418,0,1641
1	18807897	rs2992755	C	G	11625.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.560;ClippingRankSum=0.393;DB;DP=151;FS=0.576;MQ=60.00;MQRankSum=0.271;QD=25.27;ReadPosRankSum=-0.536;SOR=0.615	GT:AD:DP:GQ:PL	1/1:0,151:151:99:6421,454,0
1	18807938	rs2992754	C	A	2848.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=0.790;DB;DP=158;FS=0.804;MQ=60.00;MQRankSum=0.168;QD=18.03;ReadPosRankSum=0.396;SOR=0.590	GT:AD:DP:GQ:PL	0/1:79,79:158:99:2879,0,2889
1	18807953	rs11261022	C	A	3025.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.738;ClippingRankSum=-0.263;DB;DP=168;FS=1.733;MQ=60.00;MQRankSum=-0.949;QD=21.61;ReadPosRankSum=3.667;SOR=0.925	GT:AD:DP:GQ:PL	0/0:168,0:168:99:0,505,7188
1	18808056	rs7515150	G	C	7521.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.847;ClippingRankSum=0.532;DB;DP=202;FS=4.491;MQ=60.00;MQRankSum=-0.487;QD=17.53;ReadPosRankSum=-1.112;SOR=0.427	GT:AD:DP:GQ:PL	0/1:101,101:202:99:3881,0,5797
1	18808069	rs7528572	A	G	7769.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.465;ClippingRankSum=-1.130;DB;DP=200;FS=1.193;MQ=60.00;MQRankSum=0.480;QD=17.86;ReadPosRankSum=-0.490;SOR=0.579	GT:AD:DP:GQ:PL	0/1:103,97:200:99:3795,0,5812
1	18808292	rs2992753	C	A	15570.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.563;ClippingRankSum=-0.513;DB;DP=194;FS=0.565;MQ=59.96;MQRankSum=0.020;QD=26.35;ReadPosRankSum=1.085;SOR=0.623	GT:AD:DP:GQ:PL	1/1:0,194:194:99:8248,582,0
1	18808465	rs3007718	T	A	8294.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.065;ClippingRankSum=-0.675;DB;DP=108;FS=0.000;MQ=60.00;MQRankSum=0.077;QD=24.76;ReadPosRankSum=0.994;SOR=0.712	GT:AD:DP:GQ:PL	1/1:0,108:108:99:4646,325,0
1	18808526	rs2992752	A	C	8045.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.949;ClippingRankSum=-1.041;DB;DP=99;FS=1.506;MQ=60.00;MQRankSum=-0.667;QD=24.75;ReadPosRankSum=3.486;SOR=0.600	GT:AD:DP:GQ:PL	1/1:0,99:99:99:4272,298,0
1	18808711	rs2992751	G	C	1201.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=-0.337;DB;DP=80;FS=5.882;MQ=60.00;MQRankSum=-0.119;QD=15.01;ReadPosRankSum=0.780;SOR=1.225	GT:AD:DP:GQ:PL	0/1:45,35:80:99:1232,0,1594
1	18809896	rs2992745	A	T	4973.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.952;ClippingRankSum=1.577;DB;DP=76;FS=2.138;MQ=60.00;MQRankSum=1.138;QD=31.68;ReadPosRankSum=2.498;SOR=1.285	GT:AD:DP:GQ:PL	1/1:0,76:76:99:3222,228,0
1	18810344	rs2992740	G	T	4014.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.288;ClippingRankSum=-0.399;DB;DP=49;FS=0.000;MQ=60.00;MQRankSum=-0.392;QD=32.12;ReadPosRankSum=1.320;SOR=0.590	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2137,147,0
1	18810349	rs6667069	G	C	2612.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=-0.850;DB;DP=49;FS=1.229;MQ=60.00;MQRankSum=0.265;QD=21.41;ReadPosRankSum=1.737;SOR=0.497	GT:AD:DP:GQ:PL	0/1:26,23:49:99:845,0,988
1	18810484	rs1889861	G	A	1544.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=-0.380;DB;DP=78;FS=0.000;MQ=60.00;MQRankSum=-0.866;QD=19.80;ReadPosRankSum=0.886;SOR=0.644	GT:AD:DP:GQ:PL	0/1:39,39:78:99:1575,0,2871
1	18810486	rs1889862	A	C	1544.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.579;DB;DP=83;FS=0.624;MQ=60.00;MQRankSum=-0.161;QD=18.60;ReadPosRankSum=1.935;SOR=0.633	GT:AD:DP:GQ:PL	0/1:42,41:83:99:1575,0,2871
1	19027239	rs2743201	A	G	2630.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=-1.098;DB;DP=50;FS=1.188;MQ=60.00;MQRankSum=0.050;QD=18.14;ReadPosRankSum=4.051;SOR=0.801	GT:AD:DP:GQ:PL	0/1:27,23:50:99:854,0,1008
1	19029486	rs1416465	G	A	1075.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=1.200;DB;DP=26;FS=3.951;MQ=60.00;MQRankSum=-1.916;QD=17.34;ReadPosRankSum=2.083;SOR=0.103	GT:AD:DP:GQ:PL	0/1:12,14:26:99:521,0,440
1	19029546	rs1416464	A	G	1627.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=-1.782;DB;DP=48;FS=3.732;MQ=60.00;MQRankSum=0.439;QD=19.37;ReadPosRankSum=-0.039;SOR=0.123	GT:AD:DP:GQ:PL	0/1:19,29:48:99:1052,0,670
1	19071153	rs142874250	C	CGGAT,CGGATGGAT	2687.86	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;FS=0.000;MQ=58.31;QD=27.95;SOR=5.590	GT:AD:DP:GQ:PL	1/2:0,6,8:14:99:785,386,354,264,0,225
1	19071183	.	A	AATGGATGGATGG	415.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.578;ClippingRankSum=-0.487;DP=16;FS=0.000;MQ=57.53;MQRankSum=-2.994;QD=12.97;ReadPosRankSum=1.741;SOR=0.623	GT:AD:DP:GQ:PL	0/0:16,0:16:50:0,50,724
1	19166829	rs41273167	A	G	2098.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.150;DB;DP=111;FS=9.541;MQ=59.94;MQRankSum=3.481;QD=18.90;ReadPosRankSum=2.145;SOR=0.535	GT:AD:DP:GQ:PL	0/1:54,57:111:99:2129,0,1930
1	19168478	rs75447515	G	GA	148.89	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.884;DB;DP=32;FS=0.000;MQ=60.15;MQRankSum=0.494;QD=1.06;ReadPosRankSum=-0.567;SOR=0.256	GT:AD:DP:GQ:PL	0/1:27,5:32:27:27,0,533
1	19175846	rs28374389	T	C	2633.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;ClippingRankSum=-0.188;DB;DP=41;FS=3.684;MQ=60.00;MQRankSum=0.432;QD=25.57;ReadPosRankSum=1.321;SOR=1.267	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1723,122,0
1	19176254	rs6675384	C	T	1547.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.204;DB;DP=24;FS=0.000;MQ=60.00;MQRankSum=-0.399;QD=26.69;ReadPosRankSum=1.482;SOR=0.862	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1030,72,0
1	19181015	rs34447754	G	C	9291.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;ClippingRankSum=-1.807;DB;DP=135;FS=3.208;MQ=60.00;MQRankSum=-0.911;QD=28.59;ReadPosRankSum=1.167;SOR=0.937	GT:AD:DP:GQ:PL	1/1:0,135:135:99:5804,405,0
1	19181082	rs28470550	A	C	11627.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.073;DB;DP=182;FS=1.730;MQ=60.00;MQRankSum=-1.162;QD=28.57;ReadPosRankSum=0.709;SOR=0.839	GT:AD:DP:GQ:PL	1/1:0,182:182:99:7707,547,0
1	19181393	rs35874116	T	C	7362.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.061;ClippingRankSum=-0.706;DB;DP=120;FS=1.820;MQ=59.94;MQRankSum=-0.090;QD=26.02;ReadPosRankSum=1.906;SOR=0.528	GT:AD:DP:GQ:PL	1/1:0,120:120:99:5061,360,0
1	19184077	rs68081213	A	G	7465.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.197;ClippingRankSum=-0.190;DB;DP=115;FS=0.945;MQ=60.00;MQRankSum=-1.122;QD=28.50;ReadPosRankSum=0.545;SOR=0.765	GT:AD:DP:GQ:PL	1/1:0,115:115:99:4766,344,0
1	19184176	rs72953138	G	A	1225.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.501;ClippingRankSum=-0.706;DB;DP=76;FS=0.000;MQ=60.00;MQRankSum=-0.409;QD=16.12;ReadPosRankSum=1.702;SOR=0.616	GT:AD:DP:GQ:PL	0/1:42,34:76:99:1256,0,1611
1	19186129	rs9701796	G	C	7454.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=-1.279;DB;DP=75;FS=5.117;MQ=60.00;MQRankSum=0.046;QD=26.53;ReadPosRankSum=0.124;SOR=0.991	GT:AD:DP:GQ:PL	0/1:32,43:75:99:1578,0,1113
1	19186260	rs9700646	C	T	4637.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.934;ClippingRankSum=3.237;DB;DP=75;FS=4.947;MQ=60.00;MQRankSum=1.603;QD=28.45;ReadPosRankSum=2.757;SOR=0.413	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,225,3135
1	19186320	rs9701803	G	C	4747.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=1.099;DB;DP=61;FS=0.000;MQ=60.00;MQRankSum=-0.410;QD=25.25;ReadPosRankSum=1.312;SOR=0.610	GT:AD:DP:GQ:PL	0/1:28,33:61:99:1162,0,1021
1	19199473	rs28700162	T	A	10349.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=-1.008;DB;DP=110;FS=0.438;MQ=60.00;MQRankSum=-0.346;QD=28.67;ReadPosRankSum=0.535;SOR=0.644	GT:AD:DP:GQ:PL	0/1:53,57:110:99:2066,0,1931
1	19199487	rs35255325	A	G	1985.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;ClippingRankSum=1.729;DB;DP=110;FS=1.171;MQ=60.00;MQRankSum=0.958;QD=18.05;ReadPosRankSum=-0.564;SOR=0.578	GT:AD:DP:GQ:PL	0/1:54,56:110:99:2016,0,2038
1	19200895	rs35657817	C	T	1026.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.023;DB;DP=82;FS=8.434;MQ=60.00;MQRankSum=-1.096;QD=12.36;ReadPosRankSum=1.271;SOR=1.508	GT:AD:DP:GQ:PL	0/1:51,31:82:99:1057,0,1907
1	19200908	rs28529092	G	C	9612.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=-1.015;DB;DP=85;FS=0.000;MQ=60.00;MQRankSum=1.073;QD=30.04;ReadPosRankSum=0.864;SOR=0.674	GT:AD:DP:GQ:PL	0/1:33,52:85:99:1970,0,1083
1	19201184	rs6665917	G	C	4883.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;ClippingRankSum=-1.020;DB;DP=38;FS=0.000;MQ=60.16;MQRankSum=1.159;QD=26.01;ReadPosRankSum=0.654;SOR=1.820	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1653,114,0
1	19201211	rs67587273	T	TG	3409.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.228;DB;DP=31;FS=0.000;MQ=60.20;MQRankSum=-0.031;QD=31.86;ReadPosRankSum=0.860;SOR=2.056	GT:AD:DP:GQ:PL	1/1:0,31:31:96:1195,96,0
1	19201956	rs2230708	A	G	8191.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.862;ClippingRankSum=1.328;DB;DP=68;FS=7.551;MQ=60.00;MQRankSum=-0.241;QD=34.98;ReadPosRankSum=-0.153;SOR=0.283	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2954,204,0
1	19202770	rs7550822	T	C	7911.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MQ=60.00;QD=28.32;SOR=1.054	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2343,163,0
1	19202896	rs2230707	G	A	3283.90	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.201;ClippingRankSum=-1.147;DB;DP=55;FS=0.652;MQ=60.00;MQRankSum=-1.462;QD=27.83;ReadPosRankSum=-0.114;SOR=0.802	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2289,164,0
1	19202917	rs7550938	T	C	5668.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.742;DB;DP=49;FS=6.571;MQ=60.00;MQRankSum=0.667;QD=25.74;ReadPosRankSum=-0.029;SOR=1.475	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2230,151,0
1	19202926	rs2230706	T	C	5498.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.046;ClippingRankSum=-0.333;DB;DP=49;FS=7.561;MQ=60.00;MQRankSum=-0.055;QD=31.76;ReadPosRankSum=-0.893;SOR=1.706	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2275,154,0
1	19203131	rs6664619	C	A	186.19	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.975;ClippingRankSum=-0.825;DB;DP=6;FS=0.000;MQ=58.04;MQRankSum=0.825;QD=16.93;ReadPosRankSum=0.575;SOR=0.070	GT:AD:DP:GQ:PL	0/0:6,0:6:18:0,18,261
1	19203155	.	C	CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	627.43	PASS	AC=2;AF=1.00;AN=2;DP=1;FS=0.000;MQ=55.53;QD=31.37;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:2:43,2,0
1	19203997	rs2230705	C	G	4008.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.492;DB;DP=50;FS=1.446;MQ=60.00;MQRankSum=-0.975;QD=23.04;ReadPosRankSum=2.766;SOR=0.556	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2088,150,0
1	19204154	rs6426813	G	A	1188.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.360;ClippingRankSum=1.199;DB;DP=8;FS=0.000;MQ=60.00;MQRankSum=0.200;QD=33.00;ReadPosRankSum=0.919;SOR=1.165	GT:AD:DP:GQ:PL	1/1:0,8:8:24:355,24,0
1	19204173	rs6426814	A	G	793.36	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;ClippingRankSum=-2.002;DB;DP=5;FS=2.817;MQ=60.00;MQRankSum=0.992;QD=24.04;ReadPosRankSum=0.206;SOR=0.233	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
1	19205672	rs28497538	T	G	1120.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;ClippingRankSum=0.786;DB;DP=54;FS=0.806;MQ=60.00;MQRankSum=0.122;QD=20.74;ReadPosRankSum=0.945;SOR=0.532	GT:AD:DP:GQ:PL	0/1:21,33:54:99:1151,0,759
1	19208145	rs112548638	G	GGGTTGCCT	8051.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.19;QD=29.32;SOR=4.215	GT:AD:DP:GQ:PL	1/1:0,45:45:99:2161,147,0
1	19208944	rs28566028	A	G	5476.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.000;MQ=60.00;QD=29.00;SOR=6.091	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1556,111,0
1	19209543	rs6426611	A	G	8706.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MQ=60.00;QD=32.62;SOR=6.194	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2883,207,0
1	19211925	.	A	AC	90.32	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;ClippingRankSum=-0.743;DP=13;FS=7.403;MQ=60.00;MQRankSum=0.836;QD=1.58;ReadPosRankSum=0.720;SOR=2.749	GT:AD:DP:GQ:PL	0/1:10,3:13:49:49,0,809
1	19211930	.	A	C	84.30	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.312;ClippingRankSum=-1.801;DP=15;FS=7.354;MQ=60.00;MQRankSum=-0.207;QD=2.01;ReadPosRankSum=0.000;SOR=2.631	GT:AD:DP:GQ:PL	0/1:12,3:15:46:46,0,896
1	19211935	.	G	C	69.09	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=1.233;DP=18;FS=10.022;MQ=60.00;MQRankSum=0.374;QD=1.57;ReadPosRankSum=-0.766;SOR=2.856	GT:AD:DP:GQ:PL	0/1:15,3:18:37:37,0,1120
1	19211940	.	A	C	156.94	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.083;ClippingRankSum=1.019;DP=19;FS=21.417;MQ=60.00;MQRankSum=0.036;QD=2.21;ReadPosRankSum=-2.493;SOR=4.244	GT:AD:DP:GQ:PL	0/1:15,4:19:61:61,0,494
1	19211944	.	A	C	59.16	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.148;ClippingRankSum=1.823;DP=17;FS=7.748;MQ=60.00;MQRankSum=-1.090;QD=1.26;ReadPosRankSum=-2.129;SOR=2.625	GT:AD:DP:GQ:PL	0/1:16,1:17:37:37,0,1120
1	19215834	rs941495	T	C	16497.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;ClippingRankSum=0.677;DB;DP=149;FS=2.749;MQ=60.00;MQRankSum=-0.201;QD=34.37;ReadPosRankSum=-1.418;SOR=0.414	GT:AD:DP:GQ:PL	0/1:77,72:149:99:2519,0,2732
1	19216428	rs4592275	G	A	1778.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.289;ClippingRankSum=-0.666;DB;DP=49;FS=7.981;MQ=60.00;MQRankSum=-0.857;QD=16.02;ReadPosRankSum=1.304;SOR=1.327	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2069
1	19238001	.	TTTTATTTA	T	282.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=1.176;DP=29;FS=3.915;MQ=59.85;MQRankSum=0.357;QD=4.21;ReadPosRankSum=0.950;SOR=0.074	GT:AD:DP:GQ:PL	0/1:20,9:29:99:322,0,1261
1	19243589	rs3748586	A	G	4619.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.460;ClippingRankSum=0.664;DB;DP=107;FS=2.389;MQ=60.00;MQRankSum=1.490;QD=18.33;ReadPosRankSum=-1.496;SOR=0.895	GT:AD:DP:GQ:PL	0/0:107,0:107:99:0,322,4598
1	19246320	rs41273181	G	A	2499.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.401;ClippingRankSum=-0.480;DB;DP=58;FS=2.533;MQ=60.00;MQRankSum=1.485;QD=19.68;ReadPosRankSum=1.055;SOR=0.148	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,175,2517
1	19247509	rs35477144	G	A	2308.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.790;ClippingRankSum=0.041;DB;DP=66;FS=0.000;MQ=60.00;MQRankSum=1.214;QD=18.77;ReadPosRankSum=-0.862;SOR=0.627	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,197,2716
1	19282944	rs4912132	G	A	986.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.545;DB;DP=19;FS=2.136;MQ=60.00;MQRankSum=0.909;QD=29.03;ReadPosRankSum=2.155;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,19:19:57:774,57,0
1	19282981	rs1886768	A	C	2433.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.000;MQ=60.00;QD=33.54;SOR=5.926	GT:AD:DP:GQ:PL	1/1:0,20:20:60:795,60,0
1	19401405	rs2281748	G	A	6139.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.240;DB;DP=81;FS=4.706;MQ=60.00;MQRankSum=1.564;QD=17.20;ReadPosRankSum=2.093;SOR=0.735	GT:AD:DP:GQ:PL	0/1:44,37:81:99:1330,0,1608
1	19404176	rs2181597	G	A	1934.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=-1.980;DB;DP=33;FS=0.000;MQ=57.99;MQRankSum=-2.446;QD=20.16;ReadPosRankSum=0.951;SOR=1.006	GT:AD:DP:GQ:PL	0/1:12,21:33:99:752,0,407
1	19408294	rs111610597	G	GC	5357.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.603;ClippingRankSum=-0.958;DB;DP=105;FS=3.319;MQ=60.06;MQRankSum=-0.236;QD=20.77;ReadPosRankSum=-0.359;SOR=0.516	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3452,319,0
1	19408380	rs12164540	T	C	3379.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;ClippingRankSum=-0.098;DB;DP=46;FS=1.039;MQ=60.17;MQRankSum=-2.039;QD=27.70;ReadPosRankSum=-0.810;SOR=0.539	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1901,138,0
1	19411129	rs1043905	A	G	8069.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.058;ClippingRankSum=1.594;DB;DP=72;FS=2.279;MQ=60.00;MQRankSum=0.901;QD=28.01;ReadPosRankSum=0.138;SOR=0.921	GT:AD:DP:GQ:PL	1/1:0,72:72:99:3104,216,0
1	19412464	rs2274009	C	T	4356.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;ClippingRankSum=-1.325;DB;DP=43;FS=4.166;MQ=60.00;MQRankSum=-0.263;QD=30.06;ReadPosRankSum=3.036;SOR=2.744	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1869,129,0
1	19413261	rs12584	T	A	9574.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.560;DB;DP=82;FS=0.000;MQ=60.00;MQRankSum=-0.885;QD=34.32;ReadPosRankSum=-0.145;SOR=0.717	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3541,247,0
1	19413420	rs2274008	T	G	5794.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.359;DB;DP=53;FS=0.000;MQ=60.00;MQRankSum=1.145;QD=32.16;ReadPosRankSum=0.209;SOR=0.686	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2201,159,0
1	19415304	rs1043899	C	T	5630.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.889;DB;DP=41;FS=0.000;MQ=60.00;MQRankSum=-1.535;QD=34.06;ReadPosRankSum=1.192;SOR=1.294	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1717,123,0
1	19420392	rs1106839	G	A	5008.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.263;ClippingRankSum=0.165;DB;DP=37;FS=6.218;MQ=59.86;MQRankSum=-0.678;QD=32.52;ReadPosRankSum=0.529;SOR=1.426	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1620,111,0
1	19426199	rs2236377	G	A	3601.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.270;ClippingRankSum=-0.521;DB;DP=33;FS=0.000;MQ=60.00;MQRankSum=-1.168;QD=29.82;ReadPosRankSum=0.627;SOR=1.445	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1442,99,0
1	19433449	rs6426677	A	G	3998.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.259;ClippingRankSum=-0.289;DB;DP=39;FS=2.365;MQ=60.00;MQRankSum=-0.019;QD=34.77;ReadPosRankSum=-1.128;SOR=1.680	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1666,117,0
1	19437185	rs10916957	G	T	1778.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=-0.922;DB;DP=51;FS=15.348;MQ=60.00;MQRankSum=1.419;QD=15.33;ReadPosRankSum=2.125;SOR=0.162	GT:AD:DP:GQ:PL	0/1:29,22:51:99:733,0,1125
1	19440107	rs9661719	A	G	5578.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.463;ClippingRankSum=-1.249;DB;DP=49;FS=18.757;MQ=60.00;MQRankSum=-0.212;QD=33.01;ReadPosRankSum=2.323;SOR=3.121	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2036,146,0
1	19441212	rs2274003	A	G	4521.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;ClippingRankSum=-0.558;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=-0.807;QD=33.49;ReadPosRankSum=1.345;SOR=2.956	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1669,117,0
1	19441594	rs56030256	C	G	2358.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.355;ClippingRankSum=-0.414;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=-1.413;QD=18.72;ReadPosRankSum=0.270;SOR=0.619	GT:AD:DP:GQ:PL	0/0:55,1:56:99:0,124,2310
1	19441688	rs57046868	CACAT	C	499.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=-0.920;DB;DP=40;FS=5.368;MQ=61.04;MQRankSum=-4.314;QD=12.17;ReadPosRankSum=0.332;SOR=1.002	GT:AD:DP:GQ:PL	0/1:25,15:40:99:539,0,1005
1	19441689	rs139502260	ACATG	A	958.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.610;DB;DP=38;FS=3.622;MQ=61.06;MQRankSum=1.449;QD=9.49;ReadPosRankSum=1.711;SOR=1.059	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1700
1	19441693	.	GCA	G,GCACA	1267.86	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=1.316;DP=33;FS=0.720;MQ=61.02;MQRankSum=-2.076;QD=12.55;ReadPosRankSum=1.669;SOR=0.588	GT:AD:DP:GQ:PL	1/2:1,15,17:33:99:990,535,744,476,0,467
1	19444552	rs17392444	G	A	902.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.474;DB;DP=27;FS=2.999;MQ=60.00;MQRankSum=0.997;QD=14.55;ReadPosRankSum=0.708;SOR=0.157	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1147
1	19446587	rs6693149	C	T	1121.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=1.383;DB;DP=24;FS=0.000;MQ=60.00;MQRankSum=-1.832;QD=17.25;ReadPosRankSum=0.255;SOR=0.223	GT:AD:DP:GQ:PL	0/1:14,10:24:99:352,0,521
1	19447498	rs6426678	T	C	3851.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.418;ClippingRankSum=1.076;DB;DP=26;FS=0.000;MQ=60.00;MQRankSum=0.513;QD=28.45;ReadPosRankSum=1.122;SOR=3.696	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1147,78,0
1	19447819	rs35802543	T	C	3379.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.784;DB;DP=64;FS=0.000;MQ=60.00;MQRankSum=-1.110;QD=18.07;ReadPosRankSum=0.658;SOR=0.686	GT:AD:DP:GQ:PL	0/0:64,0:64:99:0,192,2687
1	19447843	rs1044010	C	G	8793.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.328;DB;DP=58;FS=0.000;MQ=60.00;MQRankSum=-0.090;QD=33.99;ReadPosRankSum=-0.302;SOR=0.720	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2460,174,0
1	19448326	rs6681662	C	T	6538.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.947;ClippingRankSum=-0.556;DB;DP=54;FS=3.253;MQ=60.00;MQRankSum=0.749;QD=31.74;ReadPosRankSum=2.122;SOR=0.449	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2201,161,0
1	19448608	rs7535738	C	G	2451.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.928;DB;DP=26;FS=0.000;MQ=59.63;MQRankSum=-2.671;QD=30.60;ReadPosRankSum=-1.059;SOR=2.524	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1069,78,0
1	19450938	rs6681943	G	A	1186.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.110;ClippingRankSum=-0.285;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=0.537;QD=15.61;ReadPosRankSum=-0.479;SOR=0.764	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1388
1	19464773	rs2274001	C	T	2332.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.721;DB;DP=20;FS=0.000;MQ=60.00;MQRankSum=0.789;QD=29.90;ReadPosRankSum=0.597;SOR=2.073	GT:AD:DP:GQ:PL	1/1:0,20:20:60:875,60,0
1	19470662	rs4912050	T	C	2301.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.630;ClippingRankSum=-0.570;DB;DP=50;FS=0.618;MQ=60.00;MQRankSum=0.146;QD=18.71;ReadPosRankSum=1.061;SOR=0.800	GT:AD:DP:GQ:PL	0/1:21,29:50:99:1116,0,760
1	19470749	rs2296109	G	C	3258.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.035;ClippingRankSum=1.246;DB;DP=25;FS=9.567;MQ=60.00;MQRankSum=1.638;QD=30.45;ReadPosRankSum=0.062;SOR=0.115	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1078,75,0
1	19474216	rs60506187	GCTCAATATCC	G	1234.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.394;ClippingRankSum=1.677;DB;DP=32;FS=0.000;MQ=59.96;MQRankSum=0.916;QD=15.82;ReadPosRankSum=1.444;SOR=0.197	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,3566
1	19474975	rs2296108	T	G	3903.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.783;ClippingRankSum=1.790;DB;DP=52;FS=3.116;MQ=60.00;MQRankSum=-0.445;QD=18.50;ReadPosRankSum=1.027;SOR=0.936	GT:AD:DP:GQ:PL	0/1:23,29:52:99:1073,0,811
1	19481184	rs12131098	C	T	1160.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.231;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-0.640;QD=18.13;ReadPosRankSum=-0.837;SOR=0.693	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1498
1	19483209	rs10799710	A	G	2288.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=1.184;DB;DP=44;FS=6.662;MQ=60.00;MQRankSum=1.176;QD=15.90;ReadPosRankSum=1.365;SOR=0.280	GT:AD:DP:GQ:PL	0/1:21,23:44:99:869,0,774
1	19486839	rs946419	T	C	4274.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.452;DB;DP=33;FS=7.634;MQ=60.00;MQRankSum=0.289;QD=33.38;ReadPosRankSum=-0.014;SOR=2.929	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1384,99,0
1	19487656	rs3748759	T	C	6189.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=-0.202;DB;DP=91;FS=8.232;MQ=60.00;MQRankSum=-1.641;QD=19.22;ReadPosRankSum=0.285;SOR=1.110	GT:AD:DP:GQ:PL	0/1:39,52:91:99:1985,0,1383
1	19488839	rs1999967	C	A	2046.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.032;DB;DP=18;FS=0.000;MQ=60.00;MQRankSum=-1.402;QD=34.68;ReadPosRankSum=0.812;SOR=3.296	GT:AD:DP:GQ:PL	1/1:0,18:18:54:763,54,0
1	19489275	rs10799715	G	A	1853.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=-0.131;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=-0.651;QD=17.66;ReadPosRankSum=-0.458;SOR=0.675	GT:AD:DP:GQ:PL	0/1:17,11:28:99:394,0,655
1	19491514	rs12133185	G	C	2594.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.556;ClippingRankSum=-1.854;DB;DP=44;FS=2.505;MQ=60.00;MQRankSum=0.054;QD=17.41;ReadPosRankSum=0.342;SOR=0.487	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1834
1	19491857	rs3748757	T	C	10350.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.336;ClippingRankSum=-0.410;DB;DP=86;FS=0.000;MQ=60.00;MQRankSum=-0.414;QD=34.62;ReadPosRankSum=0.520;SOR=0.655	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3739,258,0
1	19499560	rs16862578	T	C	4625.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=-0.812;DB;DP=109;FS=7.223;MQ=60.00;MQRankSum=0.469;QD=17.32;ReadPosRankSum=0.258;SOR=0.859	GT:AD:DP:GQ:PL	0/1:58,51:109:99:1804,0,2182
1	19499835	rs951908	G	C	9895.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.450;ClippingRankSum=-0.462;DB;DP=72;FS=1.217;MQ=60.00;MQRankSum=0.232;QD=33.32;ReadPosRankSum=0.664;SOR=0.596	GT:AD:DP:GQ:PL	1/1:0,72:72:99:3084,216,0
1	19499873	rs952789	G	T	3588.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.244;ClippingRankSum=-2.034;DB;DP=80;FS=0.986;MQ=60.00;MQRankSum=-0.343;QD=18.69;ReadPosRankSum=0.945;SOR=0.626	GT:AD:DP:GQ:PL	0/0:80,0:80:99:0,239,3354
1	19499954	rs952790	G	A	2759.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.692;ClippingRankSum=1.538;DB;DP=75;FS=1.737;MQ=60.00;MQRankSum=0.148;QD=15.77;ReadPosRankSum=-0.097;SOR=0.571	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,224,3179
1	19500729	rs6694521	G	A	5963.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;ClippingRankSum=0.036;DB;DP=43;FS=0.000;MQ=60.00;MQRankSum=0.458;QD=33.69;ReadPosRankSum=-0.620;SOR=0.740	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1889,129,0
1	19504300	rs2066002	G	A	676.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=2.145;DB;DP=43;FS=1.524;MQ=60.00;MQRankSum=0.435;QD=15.72;ReadPosRankSum=0.087;SOR=0.296	GT:AD:DP:GQ:PL	0/1:23,20:43:99:707,0,873
1	19504306	rs12138892	C	G	1239.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.191;DB;DP=45;FS=0.000;MQ=60.00;MQRankSum=-0.975;QD=12.77;ReadPosRankSum=1.486;SOR=0.735	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,137,1924
1	19510394	rs3762396	A	G	9997.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;ClippingRankSum=1.182;DB;DP=79;FS=20.977;MQ=60.00;MQRankSum=0.044;QD=33.21;ReadPosRankSum=0.733;SOR=1.847	GT:AD:DP:GQ:PL	1/1:0,79:79:99:3357,237,0
1	19513570	.	TTA	T	3893.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.467;DP=45;FS=0.000;MQ=60.48;MQRankSum=-0.376;QD=24.64;ReadPosRankSum=-0.501;SOR=1.524	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1623,136,0
1	19518659	rs11588032	G	A	4484.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=-0.876;DB;DP=69;FS=13.555;MQ=60.00;MQRankSum=1.127;QD=17.38;ReadPosRankSum=1.201;SOR=1.624	GT:AD:DP:GQ:PL	0/1:41,28:69:99:1028,0,1567
1	19519782	rs10799734	C	T	4104.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=1.931;DB;DP=66;FS=0.000;MQ=60.00;MQRankSum=0.230;QD=19.64;ReadPosRankSum=1.083;SOR=0.894	GT:AD:DP:GQ:PL	0/1:29,37:66:99:1372,0,1017
1	19519887	rs72651403	G	C	1932.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=1.430;DB;DP=123;FS=4.236;MQ=60.00;MQRankSum=-0.518;QD=15.71;ReadPosRankSum=0.270;SOR=0.329	GT:AD:DP:GQ:PL	0/1:66,57:123:99:1963,0,2429
1	19526363	rs12122656	A	G	543.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.641;ClippingRankSum=-0.281;DB;DP=18;FS=0.000;MQ=60.00;MQRankSum=-0.843;QD=14.29;ReadPosRankSum=-1.569;SOR=0.159	GT:AD:DP:GQ:PL	0/0:18,0:18:54:0,54,780
1	19548981	rs12405382	C	T	351.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=-1.041;DB;DP=19;FS=0.000;MQ=60.00;MQRankSum=0.208;QD=18.48;ReadPosRankSum=2.272;SOR=0.050	GT:AD:DP:GQ:PL	0/1:8,11:19:99:382,0,293
1	19549343	rs2073106	G	C	1356.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=-0.266;DB;DP=84;FS=6.406;MQ=60.00;MQRankSum=-0.941;QD=16.14;ReadPosRankSum=0.315;SOR=1.155	GT:AD:DP:GQ:PL	0/1:46,38:84:99:1387,0,1703
1	19549759	rs710870	G	A	3147.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.330;DB;DP=53;FS=7.734;MQ=60.00;MQRankSum=-1.430;QD=19.43;ReadPosRankSum=1.485;SOR=1.505	GT:AD:DP:GQ:PL	0/1:21,32:53:99:1244,0,748
1	19549864	rs2073105	T	C	1308.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.978;DB;DP=68;FS=0.000;MQ=59.89;MQRankSum=-0.524;QD=19.24;ReadPosRankSum=0.577;SOR=0.613	GT:AD:DP:GQ:PL	0/1:30,38:68:99:1339,0,1106
1	19554099	rs7515397	T	G	3936.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.736;DB;DP=31;FS=0.000;MQ=58.91;MQRankSum=-2.004;QD=33.93;ReadPosRankSum=-1.166;SOR=1.036	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1343,93,0
1	19554135	rs41307870	C	T	559.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.147;DB;DP=29;FS=0.000;MQ=58.71;MQRankSum=-0.994;QD=19.28;ReadPosRankSum=1.966;SOR=0.477	GT:AD:DP:GQ:PL	0/1:13,16:29:99:590,0,464
1	19557281	rs12128595	G	C	1541.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.319;ClippingRankSum=-0.406;DB;DP=27;FS=2.023;MQ=60.00;MQRankSum=0.321;QD=23.35;ReadPosRankSum=-1.699;SOR=1.306	GT:AD:DP:GQ:PL	0/0:27,0:27:80:0,80,1094
1	19557713	rs2275403	G	C	3931.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=-0.870;DB;DP=45;FS=9.778;MQ=60.00;MQRankSum=0.577;QD=26.38;ReadPosRankSum=-0.742;SOR=1.437	GT:AD:DP:GQ:PL	0/1:25,20:45:99:707,0,974
1	19558018	rs55748756	C	T	3150.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.500;ClippingRankSum=-0.048;DB;DP=59;FS=1.386;MQ=60.00;MQRankSum=1.457;QD=20.86;ReadPosRankSum=-0.416;SOR=0.558	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,177,2502
1	19558096	rs60543370	A	T	1951.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.690;ClippingRankSum=-1.321;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-0.526;QD=19.91;ReadPosRankSum=-0.526;SOR=0.635	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1493
1	19559729	rs16862625	A	G	1146.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.443;ClippingRankSum=0.627;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=-1.114;QD=15.08;ReadPosRankSum=-2.100;SOR=0.693	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1681
1	19565338	rs709682	C	T	2489.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.163;ClippingRankSum=-0.622;DB;DP=43;FS=0.610;MQ=60.00;MQRankSum=-0.638;QD=19.76;ReadPosRankSum=0.238;SOR=0.594	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,138,3629
1	19565344	rs709683	C	G	2533.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.879;ClippingRankSum=0.747;DB;DP=44;FS=1.233;MQ=60.00;MQRankSum=0.005;QD=19.34;ReadPosRankSum=0.765;SOR=0.597	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,138,3620
1	19566627	rs710869	A	G	2470.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.566;ClippingRankSum=1.091;DB;DP=47;FS=4.536;MQ=60.00;MQRankSum=0.905;QD=19.15;ReadPosRankSum=0.820;SOR=0.951	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1999
1	19566881	rs12084825	C	T	3496.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.179;DB;DP=88;FS=0.945;MQ=60.00;MQRankSum=-0.506;QD=17.57;ReadPosRankSum=0.979;SOR=0.705	GT:AD:DP:GQ:PL	0/1:47,41:88:99:1512,0,1674
1	19568722	rs710866	G	C	2105.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.214;ClippingRankSum=0.425;DB;DP=51;FS=4.028;MQ=60.00;MQRankSum=0.337;QD=18.31;ReadPosRankSum=1.034;SOR=0.385	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,2166
1	19568972	rs710865	A	G	1810.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.680;DB;DP=39;FS=0.975;MQ=60.00;MQRankSum=0.784;QD=17.92;ReadPosRankSum=-1.412;SOR=0.887	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1661
1	19570426	rs2294944	C	G	2165.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.545;ClippingRankSum=1.460;DB;DP=60;FS=10.687;MQ=60.00;MQRankSum=0.421;QD=16.16;ReadPosRankSum=1.449;SOR=1.385	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,181,2585
1	19578192	rs2294942	G	A	3029.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.169;DB;DP=98;FS=0.481;MQ=60.00;MQRankSum=0.390;QD=16.92;ReadPosRankSum=2.478;SOR=0.736	GT:AD:DP:GQ:PL	0/1:47,51:98:99:1900,0,1709
1	19581226	rs735026	G	A	2931.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.233;ClippingRankSum=1.309;DB;DP=69;FS=1.746;MQ=60.00;MQRankSum=0.107;QD=17.87;ReadPosRankSum=2.019;SOR=0.861	GT:AD:DP:GQ:PL	0/0:69,0:69:99:0,207,2950
1	19581442	.	G	GAA	938.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.818;DP=42;FS=1.394;MQ=60.00;MQRankSum=-0.161;QD=7.39;ReadPosRankSum=-0.128;SOR=1.006	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,135,2064
1	19581467	rs1774081	C	T	1789.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.379;ClippingRankSum=-0.232;DB;DP=45;FS=1.761;MQ=60.00;MQRankSum=-0.446;QD=16.72;ReadPosRankSum=0.232;SOR=1.079	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1897
1	19582563	rs1557133	G	A	5871.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=-0.034;DB;DP=71;FS=0.000;MQ=60.00;MQRankSum=1.315;QD=25.09;ReadPosRankSum=-0.005;SOR=0.682	GT:AD:DP:GQ:PL	0/1:33,38:71:99:1394,0,1126
1	19583330	rs2073102	G	C	862.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.028;ClippingRankSum=-0.499;DB;DP=54;FS=1.449;MQ=60.00;MQRankSum=-0.166;QD=20.05;ReadPosRankSum=0.486;SOR=0.342	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,2205
1	19583400	rs1774075	A	G	8731.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.000;MQ=60.00;QD=24.59;SOR=2.811	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2155,158,0
1	19583636	rs1126682	C	T	1513.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.756;ClippingRankSum=2.037;DB;DP=91;FS=5.037;MQ=59.92;MQRankSum=-1.327;QD=16.63;ReadPosRankSum=1.719;SOR=0.402	GT:AD:DP:GQ:PL	0/1:49,42:91:99:1544,0,1864
1	19583684	rs1774074	C	T	3537.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.463;ClippingRankSum=0.173;DB;DP=86;FS=5.870;MQ=60.00;MQRankSum=0.484;QD=17.96;ReadPosRankSum=1.581;SOR=0.930	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,258,3627
1	19583725	rs1738017	T	C	3775.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.235;ClippingRankSum=-0.787;DB;DP=85;FS=9.767;MQ=60.00;MQRankSum=0.008;QD=19.26;ReadPosRankSum=-0.496;SOR=1.197	GT:AD:DP:GQ:PL	0/0:85,0:85:99:0,256,3737
1	19583734	rs4912057	G	A	2822.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.292;ClippingRankSum=0.424;DB;DP=85;FS=9.612;MQ=60.00;MQRankSum=0.094;QD=16.31;ReadPosRankSum=0.854;SOR=0.488	GT:AD:DP:GQ:PL	0/1:48,37:85:99:1307,0,1604
1	19584004	rs1042380	G	A	4046.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.106;ClippingRankSum=1.077;DB;DP=96;FS=1.710;MQ=59.92;MQRankSum=0.277;QD=18.14;ReadPosRankSum=0.722;SOR=0.560	GT:AD:DP:GQ:PL	0/0:96,0:96:99:0,288,4110
1	19584035	rs11811927	G	A	1496.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.260;DB;DP=91;FS=0.000;MQ=59.92;MQRankSum=-0.074;QD=16.44;ReadPosRankSum=-0.469;SOR=0.708	GT:AD:DP:GQ:PL	0/1:48,43:91:99:1527,0,1818
1	19584578	rs12121472	T	C	2212.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.643;DB;DP=49;FS=7.107;MQ=60.00;MQRankSum=-0.733;QD=21.48;ReadPosRankSum=1.599;SOR=0.315	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2087
1	19585207	rs2294939	G	A	5008.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.048;ClippingRankSum=-0.203;DB;DP=123;FS=0.000;MQ=60.00;MQRankSum=-0.357;QD=16.10;ReadPosRankSum=2.824;SOR=0.733	GT:AD:DP:GQ:PL	0/0:122,1:123:99:0,358,5123
1	19585545	rs761305	G	A	1824.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;ClippingRankSum=1.100;DB;DP=21;FS=2.645;MQ=58.44;MQRankSum=-2.940;QD=24.00;ReadPosRankSum=0.498;SOR=0.312	GT:AD:DP:GQ:PL	0/1:10,11:21:99:379,0,376
1	19595137	rs2235795	C	T	1949.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.988;ClippingRankSum=0.553;DB;DP=53;FS=1.950;MQ=59.67;MQRankSum=-0.475;QD=18.74;ReadPosRankSum=0.429;SOR=0.969	GT:AD:DP:GQ:PL	0/1:26,27:53:99:1027,0,960
1	19595892	rs6665423	G	A	4028.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=2.397;DB;DP=122;FS=4.622;MQ=58.85;MQRankSum=2.028;QD=15.55;ReadPosRankSum=3.765;SOR=0.309	GT:AD:DP:GQ:PL	0/1:64,58:122:99:2062,0,2377
1	19596124	rs2235794	C	T	2587.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.143;DB;DP=74;FS=0.611;MQ=54.47;MQRankSum=-0.355;QD=19.16;ReadPosRankSum=0.382;SOR=0.771	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1440,0,1323
1	19596156	rs6665756	G	T	2277.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.319;DB;DP=58;FS=0.000;MQ=56.38;MQRankSum=-1.676;QD=18.51;ReadPosRankSum=-0.601;SOR=0.632	GT:AD:DP:GQ:PL	0/1:28,30:58:99:1136,0,991
1	19597420	rs12046875	G	T	1809.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.696;ClippingRankSum=0.201;DB;DP=101;FS=2.878;MQ=59.95;MQRankSum=0.040;QD=21.28;ReadPosRankSum=1.233;SOR=0.933	GT:AD:DP:GQ:PL	0/0:101,0:101:99:0,302,4246
1	19609013	rs59622577	C	T	1865.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.882;ClippingRankSum=-0.032;DB;DP=41;FS=0.000;MQ=60.00;MQRankSum=-2.519;QD=18.65;ReadPosRankSum=-0.707;SOR=0.883	GT:AD:DP:GQ:PL	0/0:41,0:41:99:0,122,1724
1	19609254	rs1738025	T	C	4832.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.375;DB;DP=127;FS=1.193;MQ=57.64;MQRankSum=-2.496;QD=19.72;ReadPosRankSum=1.785;SOR=0.828	GT:AD:DP:GQ:PL	0/1:55,72:127:99:2629,0,1949
1	19609437	rs12070508	T	C	646.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.946;ClippingRankSum=-0.143;DB;DP=54;FS=17.462;MQ=49.54;MQRankSum=-7.426;QD=9.94;ReadPosRankSum=-0.721;SOR=3.014	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,2324
1	19609522	rs140599506	G	A	1096.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=-0.956;DB;DP=25;FS=21.472;MQ=43.80;MQRankSum=-1.877;QD=17.97;ReadPosRankSum=1.163;SOR=2.899	GT:AD:DP:GQ:PL	0/1:7,18:25:99:699,0,231
1	19611241	rs1738023	T	C	12299.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.416;ClippingRankSum=0.332;DB;DP=148;FS=0.000;MQ=59.99;MQRankSum=-1.181;QD=26.22;ReadPosRankSum=0.002;SOR=0.708	GT:AD:DP:GQ:PL	1/1:0,148:148:99:6204,444,0
1	19611487	rs59348345	A	T	2091.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.262;ClippingRankSum=-0.488;DB;DP=58;FS=0.000;MQ=55.59;MQRankSum=-6.701;QD=17.14;ReadPosRankSum=1.499;SOR=0.716	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,175,2527
1	19612477	rs2231198	C	T	8002.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.562;DB;DP=121;FS=0.528;MQ=53.84;MQRankSum=-3.027;QD=26.41;ReadPosRankSum=1.363;SOR=0.729	GT:AD:DP:GQ:PL	1/1:0,121:121:99:5119,364,0
1	19632757	rs2231204	C	T	2588.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.494;ClippingRankSum=1.821;DB;DP=54;FS=4.408;MQ=58.91;MQRankSum=1.951;QD=18.89;ReadPosRankSum=2.312;SOR=0.173	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,2283
1	19638309	rs2227295	A	G	625.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.612;DB;DP=50;FS=6.305;MQ=60.00;MQRankSum=0.508;QD=15.25;ReadPosRankSum=-2.294;SOR=0.132	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2134
1	19650982	rs41264065	C	T	561.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.437;ClippingRankSum=-0.083;DB;DP=55;FS=0.000;MQ=60.00;MQRankSum=-0.239;QD=15.17;ReadPosRankSum=2.297;SOR=0.127	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,166,2390
1	19651102	rs41264067	A	G	1740.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.195;DB;DP=105;FS=28.303;MQ=60.00;MQRankSum=-0.334;QD=18.13;ReadPosRankSum=2.883;SOR=2.460	GT:AD:DP:GQ:PL	0/0:105,0:105:99:0,314,4406
1	19651277	rs41264069	G	A	1005.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.053;ClippingRankSum=1.110;DB;DP=50;FS=4.355;MQ=60.00;MQRankSum=0.176;QD=17.04;ReadPosRankSum=1.008;SOR=1.688	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,154,2883
1	19651300	rs41264071	T	C	1052.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.633;ClippingRankSum=-0.455;DB;DP=48;FS=2.232;MQ=60.00;MQRankSum=-1.344;QD=18.79;ReadPosRankSum=-0.387;SOR=1.270	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,147,2754
1	19651330	rs41264073	C	T	868.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.695;DB;DP=48;FS=0.000;MQ=60.00;MQRankSum=-0.676;QD=17.36;ReadPosRankSum=1.692;SOR=0.821	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,2073
1	19652063	rs11558390	G	A	1380.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.268;DB;DP=46;FS=0.000;MQ=60.19;MQRankSum=0.789;QD=23.80;ReadPosRankSum=-1.023;SOR=0.727	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1934
1	19652127	rs199660210	AGTT	A	831.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.773;ClippingRankSum=-0.648;DB;DP=28;FS=12.690;MQ=61.53;MQRankSum=1.943;QD=25.18;ReadPosRankSum=-1.007;SOR=0.097	GT:AD:DP:GQ:PL	0/0:28,0:28:87:0,87,1291
1	19652131	rs66513267	GT	G	31.19	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0.538;DB;DP=26;FS=0.000;MQ=61.56;MQRankSum=-0.811;QD=0.52;ReadPosRankSum=1.428;SOR=0.677	GT:AD:DP:GQ:PL	0/0:25,1:26:50:0,50,1063
1	19652132	rs214315	T	G	1476.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.494;ClippingRankSum=2.014;DB;DP=26;FS=12.163;MQ=61.60;MQRankSum=-1.629;QD=16.97;ReadPosRankSum=0.908;SOR=2.371	GT:AD:DP:GQ:PL	1/1:1,25:26:50:1059,50,0
1	19652133	.	G	GGT	901.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;ClippingRankSum=1.266;DP=28;FS=9.958;MQ=61.60;MQRankSum=-1.631;QD=32.18;ReadPosRankSum=2.488;SOR=2.360	GT:AD:DP:GQ:PL	0/1:5,23:28:99:941,0,120
1	19652135	.	G	GGT	831.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.795;ClippingRankSum=0.476;DP=28;FS=13.458;MQ=61.60;MQRankSum=2.835;QD=25.18;ReadPosRankSum=-1.509;SOR=0.082	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,1256
1	19652642	rs41264075	A	C	430.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.519;DB;DP=24;FS=0.000;MQ=60.00;MQRankSum=-1.093;QD=17.21;ReadPosRankSum=-0.885;SOR=0.379	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,1050
1	19652684	rs41264077	G	C	389.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.005;ClippingRankSum=-1.138;DB;DP=30;FS=0.000;MQ=60.00;MQRankSum=-0.132;QD=12.55;ReadPosRankSum=1.382;SOR=0.368	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1285
1	19653256	rs7553611	A	G	1333.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.442;DB;DP=82;FS=4.710;MQ=60.00;MQRankSum=0.849;QD=18.26;ReadPosRankSum=0.921;SOR=0.219	GT:AD:DP:GQ:PL	0/0:82,0:82:99:0,246,3473
1	19654023	.	A	ATCCCTCCC	404.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.567;ClippingRankSum=1.707;DP=2;FS=18.963;MQ=59.68;MQRankSum=0.369;QD=4.93;ReadPosRankSum=-0.170;SOR=0.588	GT:AD:DP:GQ:PL	1/1:0,2:2:8:133,8,0
1	19665497	rs6889	A	C	57.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.067;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.762;QD=28.85;ReadPosRankSum=0.067;SOR=0.551	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
1	19669235	rs12124843	A	G	1000.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=-1.391;DB;DP=56;FS=7.470;MQ=60.00;MQRankSum=-0.288;QD=17.55;ReadPosRankSum=0.725;SOR=0.166	GT:AD:DP:GQ:PL	0/1:28,28:56:99:1031,0,1015
1	19671766	rs72651465	T	A	4575.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.212;ClippingRankSum=1.659;DB;DP=120;FS=4.927;MQ=60.00;MQRankSum=1.582;QD=17.94;ReadPosRankSum=0.472;SOR=0.495	GT:AD:DP:GQ:PL	0/0:120,0:120:99:0,359,5055
1	19675253	.	AG	A	2856.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.960;ClippingRankSum=-0.545;DP=81;FS=14.306;MQ=60.31;MQRankSum=0.746;QD=11.52;ReadPosRankSum=1.581;SOR=1.358	GT:AD:DP:GQ:PL	0/1:22,59:81:99:1364,0,653
1	19675263	rs34514368	GC	G	598.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.442;DB;DP=85;FS=47.027;MQ=60.39;MQRankSum=-1.049;QD=3.23;ReadPosRankSum=0.156;SOR=1.244	GT:AD:DP:GQ:PL	0/1:70,15:85:99:152,0,2579
1	19683301	rs169957	G	T	1091.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.490;DB;DP=62;FS=3.952;MQ=60.04;MQRankSum=-0.479;QD=17.32;ReadPosRankSum=-1.324;SOR=0.289	GT:AD:DP:GQ:PL	0/1:31,31:62:99:1122,0,1128
1	19711939	rs10753561	T	C	530.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;ClippingRankSum=0.402;DB;DP=20;FS=2.011;MQ=60.00;MQRankSum=0.127;QD=26.51;ReadPosRankSum=1.376;SOR=0.278	GT:AD:DP:GQ:PL	0/1:5,15:20:99:561,0,150
1	19746332	rs41264091	A	T	2514.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.921;DB;DP=41;FS=4.570;MQ=60.00;MQRankSum=-0.983;QD=19.65;ReadPosRankSum=0.759;SOR=1.497	GT:AD:DP:GQ:PL	0/1:23,18:41:99:670,0,874
1	19775113	rs4912096	T	C	949.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;ClippingRankSum=1.415;DB;DP=57;FS=9.816;MQ=60.00;MQRankSum=1.335;QD=16.65;ReadPosRankSum=-0.824;SOR=0.135	GT:AD:DP:GQ:PL	0/1:30,27:57:99:980,0,1082
1	19775246	rs10442634	C	T	1375.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.162;DB;DP=86;FS=3.063;MQ=60.00;MQRankSum=-0.070;QD=15.99;ReadPosRankSum=0.393;SOR=0.970	GT:AD:DP:GQ:PL	0/1:46,40:86:99:1406,0,1674
1	19775492	rs10442635	A	G	1194.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=1.044;DB;DP=49;FS=4.376;MQ=60.00;MQRankSum=-1.364;QD=24.37;ReadPosRankSum=-0.646;SOR=0.138	GT:AD:DP:GQ:PL	0/1:16,33:49:99:1225,0,541
1	19775566	rs1546264	G	A	1667.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.284;DB;DP=36;FS=0.000;MQ=60.00;MQRankSum=-0.924;QD=15.16;ReadPosRankSum=3.964;SOR=0.446	GT:AD:DP:GQ:PL	0/1:21,15:36:99:527,0,774
1	19810810	rs58967920	G	GC	1404.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.894;ClippingRankSum=-1.239;DB;DP=98;FS=2.598;MQ=60.00;MQRankSum=-0.530;QD=12.54;ReadPosRankSum=1.809;SOR=1.159	GT:AD:DP:GQ:PL	0/1:42,56:98:99:1444,0,979
1	19923313	rs4912130	T	A	1654.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=1.105;DB;DP=29;FS=2.376;MQ=60.00;MQRankSum=0.558;QD=17.79;ReadPosRankSum=0.832;SOR=0.437	GT:AD:DP:GQ:PL	0/1:11,18:29:99:698,0,356
1	19935118	rs201069547	T	TA	3513.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=-0.202;DB;DP=78;FS=3.181;MQ=60.03;MQRankSum=-0.877;QD=10.30;ReadPosRankSum=-1.774;SOR=0.893	GT:AD:DP:GQ:PL	0/1:47,31:78:99:710,0,1203
1	19948507	rs728611	A	G	2805.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=-0.607;DB;DP=63;FS=2.990;MQ=60.04;MQRankSum=-1.763;QD=17.64;ReadPosRankSum=-0.611;SOR=0.461	GT:AD:DP:GQ:PL	0/1:34,29:63:99:1078,0,1292
1	19948573	rs144510765	GT	G	868.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.036;ClippingRankSum=0.688;DB;DP=53;FS=3.369;MQ=60.04;MQRankSum=-1.359;QD=11.57;ReadPosRankSum=0.014;SOR=1.039	GT:AD:DP:GQ:PL	0/0:53,0:53:99:0,159,1691
1	19950062	rs1737428	T	C	1717.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.462;ClippingRankSum=-0.268;DB;DP=43;FS=3.076;MQ=59.80;MQRankSum=0.048;QD=15.06;ReadPosRankSum=1.175;SOR=0.378	GT:AD:DP:GQ:PL	0/1:19,24:43:99:828,0,689
1	19956374	rs2792059	T	G	65.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=32.56;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	19972586	rs11810271	A	G	4446.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.534;DB;DP=61;FS=2.101;MQ=60.00;MQRankSum=0.523;QD=18.38;ReadPosRankSum=3.417;SOR=0.419	GT:AD:DP:GQ:PL	0/1:29,32:61:99:1169,0,1061
1	19981451	rs3828101	A	G	2645.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.016;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=-1.943;QD=24.27;ReadPosRankSum=-0.334;SOR=1.483	GT:AD:DP:GQ:PL	0/1:21,17:38:99:572,0,780
1	19981791	rs2294630	A	G	7323.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.749;DB;DP=82;FS=15.920;MQ=60.00;MQRankSum=-1.013;QD=23.93;ReadPosRankSum=-1.518;SOR=0.916	GT:AD:DP:GQ:PL	0/1:49,33:82:99:1171,0,1809
1	19992066	rs10917509	T	C	1914.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=1.330;DB;DP=22;FS=0.000;MQ=60.00;MQRankSum=-0.404;QD=25.19;ReadPosRankSum=0.899;SOR=0.920	GT:AD:DP:GQ:PL	0/1:13,9:22:99:326,0,494
1	20008600	rs10799831	C	T	63.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=31.94;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
1	20008880	rs9064	G	T	899.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=-0.525;DB;DP=13;FS=0.000;MQ=60.00;MQRankSum=0.184;QD=22.48;ReadPosRankSum=0.213;SOR=1.445	GT:AD:DP:GQ:PL	0/1:6,7:13:99:235,0,223
1	20020993	rs4370779	A	G	5623.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=-1.921;DB;DP=79;FS=0.483;MQ=60.00;MQRankSum=0.162;QD=23.53;ReadPosRankSum=0.355;SOR=0.738	GT:AD:DP:GQ:PL	0/1:46,33:79:99:1299,0,3704
1	20020994	rs4515815	C	T	5623.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=-0.104;DB;DP=82;FS=0.000;MQ=60.00;MQRankSum=0.243;QD=23.53;ReadPosRankSum=0.035;SOR=0.727	GT:AD:DP:GQ:PL	0/1:47,35:82:99:1299,0,3704
1	20027034	rs71704175	ATCT	A	4445.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.885;DB;DP=36;FS=6.350;MQ=60.26;MQRankSum=-1.634;QD=33.38;ReadPosRankSum=-0.556;SOR=2.512	GT:AD:DP:GQ:PL	0/1:19,17:36:99:646,0,739
1	20027049	rs10917520	A	C	628.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=1.200;DB;DP=37;FS=2.722;MQ=60.25;MQRankSum=-0.561;QD=16.98;ReadPosRankSum=-0.349;SOR=0.160	GT:AD:DP:GQ:PL	0/1:19,18:37:99:659,0,694
1	20027404	rs10799834	G	A	1133.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;ClippingRankSum=-0.947;DB;DP=71;FS=1.012;MQ=60.00;MQRankSum=-1.598;QD=15.96;ReadPosRankSum=0.892;SOR=0.810	GT:AD:DP:GQ:PL	0/1:38,33:71:99:1164,0,1377
1	20027423	rs10737480	T	G	888.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=-0.258;DB;DP=60;FS=1.370;MQ=60.00;MQRankSum=0.477;QD=14.32;ReadPosRankSum=2.303;SOR=0.394	GT:AD:DP:GQ:PL	0/1:33,27:60:99:919,0,1229
1	20097285	rs41311997	T	G	6014.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=-0.105;DB;DP=59;FS=9.966;MQ=60.00;MQRankSum=0.426;QD=33.60;ReadPosRankSum=1.637;SOR=2.106	GT:AD:DP:GQ:PL	0/1:26,33:59:99:1230,0,874
1	20097370	rs2235650	T	C	3187.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.345;DB;DP=28;FS=5.705;MQ=60.00;MQRankSum=0.005;QD=32.86;ReadPosRankSum=2.593;SOR=1.795	GT:AD:DP:GQ:PL	0/1:16,12:28:99:402,0,622
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1	20141528	rs1541185	C	T	4951.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.774;ClippingRankSum=-0.641;DB;DP=110;FS=3.006;MQ=60.00;MQRankSum=0.730;QD=17.87;ReadPosRankSum=3.513;SOR=0.861	GT:AD:DP:GQ:PL	0/0:110,0:110:99:0,331,4665
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1	20246876	rs61729970	C	T	1402.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.114;ClippingRankSum=-0.424;DB;DP=83;FS=1.378;MQ=60.00;MQRankSum=-0.016;QD=16.89;ReadPosRankSum=1.394;SOR=0.560	GT:AD:DP:GQ:PL	0/1:44,39:83:99:1433,0,1632
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1	20411332	rs2020887	C	T	877.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=-0.170;DB;DP=61;FS=7.619;MQ=60.00;MQRankSum=-1.082;QD=14.38;ReadPosRankSum=0.383;SOR=0.252	GT:AD:DP:GQ:PL	0/1:35,26:61:99:908,0,1263
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1	20466830	rs12065685	T	C	7392.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=1.815;DB;DP=40;FS=5.389;MQ=60.00;MQRankSum=-0.013;QD=37.54;ReadPosRankSum=-0.228;SOR=1.404	GT:AD:DP:GQ:PL	0/1:19,21:40:99:788,0,697
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1	20474907	rs3738126	T	C	826.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.283;DB;DP=44;FS=3.360;MQ=60.00;MQRankSum=-0.038;QD=17.21;ReadPosRankSum=4.204;SOR=0.107	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1897
1	20490518	rs6426616	T	C	6124.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230;ClippingRankSum=-0.801;DB;DP=87;FS=5.084;MQ=60.00;MQRankSum=-1.111;QD=18.50;ReadPosRankSum=1.773;SOR=0.952	GT:AD:DP:GQ:PL	0/1:38,49:87:99:1726,0,1393
1	20499168	rs2301475	T	C	412.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.160;ClippingRankSum=-1.175;DB;DP=40;FS=2.221;MQ=60.00;MQRankSum=-0.220;QD=10.30;ReadPosRankSum=-0.518;SOR=1.179	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1679
1	20501362	rs6692902	C	T	1117.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.015;ClippingRankSum=0.591;DB;DP=66;FS=2.318;MQ=60.00;MQRankSum=0.091;QD=16.43;ReadPosRankSum=0.527;SOR=1.090	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,199,2864
1	20501442	rs10916718	T	C	3887.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.813;DB;DP=110;FS=5.018;MQ=60.00;MQRankSum=-1.790;QD=16.76;ReadPosRankSum=2.167;SOR=0.457	GT:AD:DP:GQ:PL	0/1:55,55:110:99:1984,0,1995
1	20501582	rs12139100	G	A	2061.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.670;ClippingRankSum=-0.851;DB;DP=98;FS=15.271;MQ=60.00;MQRankSum=-0.048;QD=17.62;ReadPosRankSum=0.602;SOR=1.532	GT:AD:DP:GQ:PL	0/0:98,0:98:99:0,295,4189
1	20501670	rs41264517	G	A	3791.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.662;DB;DP=94;FS=6.999;MQ=60.00;MQRankSum=0.785;QD=18.05;ReadPosRankSum=0.799;SOR=0.412	GT:AD:DP:GQ:PL	0/1:46,48:94:99:1768,0,1700
1	20503710	rs10753483	G	A	1168.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.393;ClippingRankSum=-0.571;DB;DP=23;FS=3.144;MQ=60.00;MQRankSum=-1.148;QD=17.45;ReadPosRankSum=0.481;SOR=0.190	GT:AD:DP:GQ:PL	0/1:10,13:23:99:492,0,278
1	20617419	rs12738826	T	C	139.55	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.227;ClippingRankSum=1.246;DB;DP=4;FS=6.117;MQ=60.00;MQRankSum=0.566;QD=11.63;ReadPosRankSum=1.133;SOR=2.712	GT:AD:DP:GQ:PL	0/0:4,0:4:12:0,12,178
1	20637043	rs12726937	C	T	2689.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.591;ClippingRankSum=0.268;DB;DP=66;FS=6.397;MQ=60.00;MQRankSum=1.073;QD=15.28;ReadPosRankSum=2.595;SOR=0.085	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,197,2764
1	20637374	rs10916761	T	C	4864.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.007;ClippingRankSum=-1.752;DB;DP=90;FS=5.757;MQ=60.00;MQRankSum=-0.123;QD=29.85;ReadPosRankSum=2.842;SOR=0.184	GT:AD:DP:GQ:PL	0/0:90,0:90:99:0,270,3882
1	20640512	rs72647041	C	T	384.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=-0.185;DB;DP=27;FS=12.825;MQ=60.00;MQRankSum=0.032;QD=13.72;ReadPosRankSum=0.684;SOR=0.010	GT:AD:DP:GQ:PL	0/1:15,12:27:99:415,0,555
1	20643944	rs4654851	G	C	2730.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.261;ClippingRankSum=-0.744;DB;DP=46;FS=7.136;MQ=60.00;MQRankSum=0.002;QD=25.29;ReadPosRankSum=0.868;SOR=0.064	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1943
1	20644752	rs10916762	G	A	2366.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.320;ClippingRankSum=-0.271;DB;DP=66;FS=0.000;MQ=60.00;MQRankSum=-1.823;QD=18.06;ReadPosRankSum=0.814;SOR=0.716	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,198,2820
1	20649814	rs4655194	T	C	4240.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.423;DB;DP=117;FS=3.919;MQ=60.00;MQRankSum=-0.540;QD=17.45;ReadPosRankSum=0.716;SOR=0.468	GT:AD:DP:GQ:PL	0/0:117,0:117:99:0,350,4859
1	20656824	rs2072752	A	G	3720.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.874;ClippingRankSum=1.356;DB;DP=71;FS=2.892;MQ=60.00;MQRankSum=0.674;QD=20.11;ReadPosRankSum=1.663;SOR=0.426	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,214,3103
1	20657352	rs2072753	T	C	3243.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.100;ClippingRankSum=0.086;DB;DP=95;FS=4.472;MQ=60.00;MQRankSum=-1.143;QD=16.89;ReadPosRankSum=0.647;SOR=0.971	GT:AD:DP:GQ:PL	0/0:95,0:95:99:0,286,4130
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1	20671833	rs10799629	C	A	3317.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.270;ClippingRankSum=-0.997;DB;DP=73;FS=0.664;MQ=60.00;MQRankSum=-1.208;QD=19.29;ReadPosRankSum=1.165;SOR=0.612	GT:AD:DP:GQ:PL	0/0:73,0:73:99:0,219,3149
1	20671961	rs11582960	G	A	3234.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.241;ClippingRankSum=-0.058;DB;DP=90;FS=2.908;MQ=60.00;MQRankSum=-0.462;QD=16.93;ReadPosRankSum=2.401;SOR=0.899	GT:AD:DP:GQ:PL	0/0:90,0:90:99:0,270,3853
1	20672101	rs4655200	C	T	2279.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.794;DB;DP=60;FS=1.804;MQ=60.00;MQRankSum=-0.392;QD=18.53;ReadPosRankSum=1.649;SOR=0.490	GT:AD:DP:GQ:PL	0/0:59,1:60:99:0,135,2486
1	20675864	rs71585756	T	TTTTA	672.04	PASS	AC=0;AF=0.00;AN=2;DB;DP=0;FS=0.000;MQ=60.01;QD=6.79;SOR=5.670	GT:AD:DP:GQ:PL	0/0:0,0:0:6:0,6,13
1	20676932	rs179471	T	A	930.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.757;DB;DP=35;FS=0.000;MQ=60.00;MQRankSum=0.075;QD=12.74;ReadPosRankSum=0.692;SOR=0.233	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,104,1467
1	20680718	rs2072751	G	A	4852.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.384;ClippingRankSum=-0.376;DB;DP=128;FS=1.260;MQ=60.00;MQRankSum=-0.067;QD=17.77;ReadPosRankSum=0.056;SOR=0.786	GT:AD:DP:GQ:PL	0/0:128,0:128:99:0,384,5525
1	20680760	rs230180	A	G	5135.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.971;ClippingRankSum=-0.024;DB;DP=112;FS=5.031;MQ=60.00;MQRankSum=-0.049;QD=19.02;ReadPosRankSum=-0.670;SOR=0.954	GT:AD:DP:GQ:PL	0/0:112,0:112:99:0,335,4645
1	20681004	rs2281001	G	C	1325.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.342;ClippingRankSum=1.217;DB;DP=22;FS=2.549;MQ=60.00;MQRankSum=-1.256;QD=18.41;ReadPosRankSum=-0.898;SOR=0.150	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,952
1	20808846	.	A	C	47.14	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=-1.231;DP=2;FS=0.000;MQ=60.00;MQRankSum=-1.231;QD=9.43;ReadPosRankSum=-0.358;SOR=2.245	GT:AD:DP:GQ:PL	0/1:1,1:2:39:39,0,209
1	20808851	.	A	C	50.14	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DP=2;FS=0.000;MQ=60.00;MQRankSum=-1.026;QD=12.54;ReadPosRankSum=-1.026;SOR=2.209	GT:AD:DP:GQ:PL	0/1:1,1:2:39:39,0,209
1	20808859	.	A	C	50.14	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-1.026;DP=2;FS=0.000;MQ=60.00;MQRankSum=1.026;QD=12.54;ReadPosRankSum=-1.026;SOR=2.209	GT:AD:DP:GQ:PL	0/1:1,1:2:39:39,0,209
1	20808860	.	G	C	50.14	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.736;QD=16.71;ReadPosRankSum=-0.736;SOR=1.414	GT:AD:DP:GQ:PL	0/1:1,0:1:39:39,0,209
1	20808863	.	A	C	12.37	LowQual;SnpCluster	AC=0;AF=0.00;AN=2;DP=1;FS=0.000;MQ=60.00;QD=12.37;SOR=0.105	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,215
1	20827031	rs531651	A	G	1310.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=-1.098;DB;DP=18;FS=1.484;MQ=60.00;MQRankSum=-1.517;QD=17.96;ReadPosRankSum=-0.425;SOR=1.220	GT:AD:DP:GQ:PL	0/1:12,6:18:99:199,0,451
1	20827216	rs595980	C	T	4781.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=-1.200;DB;DP=76;FS=2.645;MQ=60.00;MQRankSum=0.470;QD=16.96;ReadPosRankSum=1.358;SOR=0.907	GT:AD:DP:GQ:PL	0/1:42,34:76:99:1185,0,1606
1	20829560	rs2641114	G	A	3429.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.030;ClippingRankSum=-0.870;DB;DP=55;FS=1.028;MQ=60.00;MQRankSum=0.475;QD=19.06;ReadPosRankSum=-0.244;SOR=0.930	GT:AD:DP:GQ:PL	0/1:25,30:55:99:1093,0,892
1	20829808	rs60519890	TA	T	1748.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=-1.556;DB;DP=67;FS=1.211;MQ=60.09;MQRankSum=0.924;QD=7.60;ReadPosRankSum=1.515;SOR=1.054	GT:AD:DP:GQ:PL	0/1:35,32:67:99:684,0,742
1	20834610	rs6700034	C	A	335.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.273;DB;DP=22;FS=0.000;MQ=60.00;MQRankSum=-0.007;QD=15.23;ReadPosRankSum=2.442;SOR=0.078	GT:AD:DP:GQ:PL	0/1:12,10:22:99:366,0,447
1	20915531	rs602950	A	G	682.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=-0.509;DB;DP=28;FS=2.094;MQ=60.00;MQRankSum=-0.106;QD=13.12;ReadPosRankSum=0.035;SOR=0.219	GT:AD:DP:GQ:PL	0/1:18,10:28:99:354,0,699
1	20915589	rs3215400	TC	T	467.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=1.897;DB;DP=24;FS=6.253;MQ=60.00;MQRankSum=1.204;QD=9.16;ReadPosRankSum=-0.568;SOR=0.145	GT:AD:DP:GQ:PL	0/1:12,12:24:99:356,0,356
1	20915701	rs2072671	A	C	1620.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=-0.153;DB;DP=53;FS=2.141;MQ=60.00;MQRankSum=-0.178;QD=15.14;ReadPosRankSum=0.098;SOR=0.507	GT:AD:DP:GQ:PL	0/1:23,30:53:99:1107,0,804
1	20931774	rs10916825	A	G	3127.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=-0.909;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=2.033;QD=27.19;ReadPosRankSum=0.424;SOR=0.420	GT:AD:DP:GQ:PL	0/1:18,24:42:99:880,0,669
1	20940258	rs488991	T	A	9749.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.000;MQ=60.00;QD=35.57;SOR=2.104	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2626,186,0
1	20944889	rs77158575	G	A	1025.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=2.261;ClippingRankSum=-1.056;DB;DP=58;FS=0.000;MQ=60.00;MQRankSum=-0.044;QD=16.81;ReadPosRankSum=0.562;SOR=0.623	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,174,2457
1	20944909	rs61781969	G	A	1138.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.892;DB;DP=65;FS=0.751;MQ=60.00;MQRankSum=0.282;QD=15.18;ReadPosRankSum=1.797;SOR=0.583	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,195,2739
1	20944922	rs61781970	C	T	1194.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.964;ClippingRankSum=1.145;DB;DP=62;FS=1.543;MQ=60.00;MQRankSum=0.922;QD=15.51;ReadPosRankSum=2.779;SOR=0.544	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,186,2686
1	20945055	rs1048977	C	T	970.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.205;DB;DP=75;FS=6.860;MQ=60.00;MQRankSum=0.837;QD=16.44;ReadPosRankSum=2.336;SOR=0.292	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,224,3102
1	20945064	rs72650823	G	A	2594.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.172;DB;DP=67;FS=0.557;MQ=60.00;MQRankSum=-0.304;QD=16.21;ReadPosRankSum=-0.455;SOR=0.755	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,200,2864
1	20945252	rs71734620	G	GC	244.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.337;ClippingRankSum=-0.756;DB;DP=29;FS=0.000;MQ=60.00;MQRankSum=-1.236;QD=10.61;ReadPosRankSum=0.052;SOR=0.677	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,922
1	20945452	rs12128671	A	G	87.86	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.001;ClippingRankSum=-0.573;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.248;QD=21.97;ReadPosRankSum=0.573;SOR=0.283	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,45
1	20945520	rs552722	C	A	109.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=25.58;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	20960230	rs45530340	C	T	3518.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=-1.605;DB;DP=36;FS=0.755;MQ=60.00;MQRankSum=-0.215;QD=26.65;ReadPosRankSum=0.032;SOR=0.799	GT:AD:DP:GQ:PL	0/1:19,17:36:99:590,0,683
1	20960385	rs148871409	A	T	1133.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.218;ClippingRankSum=-1.255;DB;DP=59;FS=3.968;MQ=60.00;MQRankSum=-0.106;QD=23.61;ReadPosRankSum=1.460;SOR=1.177	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,178,2569
1	20964270	rs2298297	C	G	773.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.998;ClippingRankSum=-1.834;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-0.470;QD=19.33;ReadPosRankSum=0.798;SOR=0.430	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,102,1441
1	20964328	rs2298298	A	G	5119.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.534;ClippingRankSum=-0.417;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=1.230;QD=34.13;ReadPosRankSum=1.756;SOR=0.592	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1595,117,0
1	20971875	rs3131712	G	A	301.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=1.157;DB;DP=33;FS=0.000;MQ=60.00;MQRankSum=-0.285;QD=9.13;ReadPosRankSum=-0.483;SOR=0.020	GT:AD:DP:GQ:PL	0/1:22,11:33:99:332,0,682
1	20971911	rs56125389	G	C	3290.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;ClippingRankSum=1.254;DB;DP=37;FS=0.000;MQ=60.10;MQRankSum=0.973;QD=29.64;ReadPosRankSum=-0.938;SOR=2.324	GT:AD:DP:GQ:PL	0/1:14,23:37:99:859,0,438
1	20971980	.	C	CA	1083.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.796;ClippingRankSum=-0.515;DP=18;FS=6.107;MQ=59.96;MQRankSum=0.983;QD=12.89;ReadPosRankSum=-0.140;SOR=2.636	GT:AD:DP:GQ:PL	1/1:1,17:18:24:234,24,0
1	20972048	rs3131713	G	A	8457.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.133;ClippingRankSum=1.302;DB;DP=73;FS=0.665;MQ=59.95;MQRankSum=-1.215;QD=31.67;ReadPosRankSum=1.820;SOR=0.597	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2932,217,0
1	20972304	rs55921814	GGTTTTGTGTTCTAA	G	5138.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;ClippingRankSum=1.005;DB;DP=54;FS=2.103;MQ=60.18;MQRankSum=-0.400;QD=28.87;ReadPosRankSum=-4.460;SOR=1.601	GT:AD:DP:GQ:PL	0/1:27,27:54:99:1011,0,1052
1	20974802	rs2298299	A	G	3533.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.638;DB;DP=49;FS=9.941;MQ=60.00;MQRankSum=-0.792;QD=26.17;ReadPosRankSum=0.392;SOR=1.567	GT:AD:DP:GQ:PL	0/1:28,21:49:99:753,0,1094
1	20976759	rs540038	C	T	2032.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.314;DB;DP=20;FS=2.424;MQ=60.00;MQRankSum=-1.333;QD=32.26;ReadPosRankSum=0.518;SOR=0.372	GT:AD:DP:GQ:PL	1/1:0,20:20:60:846,60,0
1	20977221	rs686658	A	T	5670.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.034;DB;DP=47;FS=0.000;MQ=60.00;MQRankSum=0.598;QD=34.79;ReadPosRankSum=0.768;SOR=1.519	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1999,141,0
1	20978058	rs650616	G	A	64.88	PASS	AC=0;AF=0.00;AN=0;DB;DP=2;FS=0.000;MQ=60.00;QD=32.44;SOR=0.693	GT	./.
1	20978115	rs17406145	G	A	110.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=27.33;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	20978126	rs10641565	C	CCAT	186.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=28.37;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	20978183	rs10641566	C	CACTT	146.18	PASS	AC=0;AF=0.00;AN=0;DB;DP=4;FS=0.000;MQ=60.00;QD=29.98;SOR=0.693	GT	./.
1	20978294	rs202180614	TTTTA	T	49.83	PASS	AC=0;AF=0.00;AN=0;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=7;FS=0.000;MQ=60.00;MQRankSum=-0.736;QD=24.92;ReadPosRankSum=0.736;SOR=2.225	GT	./.
1	20978832	rs6893	T	C	9541.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.223;ClippingRankSum=1.713;DB;DP=82;FS=4.969;MQ=60.00;MQRankSum=-2.221;QD=32.90;ReadPosRankSum=-0.228;SOR=1.091	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3530,247,0
1	20979307	rs34089130	G	GT	13308.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.567;DB;DP=144;FS=1.759;MQ=60.11;MQRankSum=0.124;QD=26.72;ReadPosRankSum=1.820;SOR=0.558	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4871,436,0
1	20980880	rs607254	G	A	2215.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.172;DB;DP=98;FS=2.711;MQ=60.00;MQRankSum=-0.530;QD=22.60;ReadPosRankSum=3.106;SOR=0.504	GT:AD:DP:GQ:PL	0/1:38,60:98:99:2246,0,1291
1	20980922	rs2070658	G	A	1779.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.342;ClippingRankSum=-0.558;DB;DP=93;FS=3.896;MQ=60.00;MQRankSum=0.391;QD=17.97;ReadPosRankSum=1.237;SOR=1.015	GT:AD:DP:GQ:PL	0/0:93,0:93:99:0,279,3965
1	20981768	rs115601582	G	T	508.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.129;ClippingRankSum=-0.068;DB;DP=21;FS=0.000;MQ=60.00;MQRankSum=-0.690;QD=21.17;ReadPosRankSum=2.222;SOR=0.269	GT:AD:DP:GQ:PL	0/0:21,0:21:63:0,63,925
1	20981806	rs592851	G	A	3729.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.000;MQ=60.00;QD=28.61;SOR=7.569	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1300,90,0
1	20982631	rs4704	G	A	1484.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=-0.090;DB;DP=83;FS=13.873;MQ=60.00;MQRankSum=0.333;QD=17.67;ReadPosRankSum=3.254;SOR=1.261	GT:AD:DP:GQ:PL	0/1:42,41:83:99:1515,0,1604
1	20987873	rs537816	G	C	7145.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.000;MQ=60.00;QD=30.67;SOR=1.638	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2603,178,0
1	20991273	rs56070322	G	A	4054.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.392;DB;DP=47;FS=1.776;MQ=60.00;MQRankSum=0.021;QD=26.16;ReadPosRankSum=2.977;SOR=0.465	GT:AD:DP:GQ:PL	0/1:27,20:47:99:677,0,996
1	20991404	rs645819	G	C	76.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.151;DB;DP=5;FS=0.000;MQ=60.00;MQRankSum=-1.156;QD=15.23;ReadPosRankSum=-0.151;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,3:5:74:107,0,74
1	20992606	rs630484	G	T	1451.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703;ClippingRankSum=0.133;DB;DP=118;FS=0.823;MQ=60.00;MQRankSum=0.553;QD=12.30;ReadPosRankSum=2.969;SOR=0.806	GT:AD:DP:GQ:PL	0/1:73,45:118:99:1482,0,2701
1	20992819	rs631357	G	C	12043.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.069;DB;DP=106;FS=0.743;MQ=60.00;MQRankSum=-1.087;QD=28.58;ReadPosRankSum=0.517;SOR=0.619	GT:AD:DP:GQ:PL	1/1:0,106:106:99:4503,318,0
1	20992933	rs573268	G	C	6434.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.000;MQ=60.00;QD=24.83;SOR=7.838	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2081,147,0
1	20997072	rs41265075	A	G	1604.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.826;ClippingRankSum=-0.565;DB;DP=74;FS=0.724;MQ=60.00;MQRankSum=1.490;QD=19.33;ReadPosRankSum=0.411;SOR=0.582	GT:AD:DP:GQ:PL	0/0:73,1:74:99:0,191,3099
1	20998849	rs72650862	C	T	1426.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=-0.701;DB;DP=31;FS=2.572;MQ=60.00;MQRankSum=0.786;QD=20.67;ReadPosRankSum=1.559;SOR=0.134	GT:AD:DP:GQ:PL	0/1:14,17:31:99:635,0,481
1	21012563	rs72650870	C	T	3085.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=-0.350;DB;DP=44;FS=3.110;MQ=60.00;MQRankSum=-0.272;QD=19.53;ReadPosRankSum=0.817;SOR=0.965	GT:AD:DP:GQ:PL	0/1:21,23:44:99:882,0,785
1	21016487	rs489334	C	T	460.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.735;DB;DP=23;FS=6.847;MQ=60.00;MQRankSum=0.034;QD=19.17;ReadPosRankSum=0.161;SOR=0.071	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,950
1	21016906	rs493018	G	T	545.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.231;ClippingRankSum=1.015;DB;DP=46;FS=12.634;MQ=56.86;MQRankSum=-0.266;QD=15.58;ReadPosRankSum=-0.714;SOR=0.057	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1970
1	21024860	rs41302005	C	A	927.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.396;ClippingRankSum=1.572;DB;DP=50;FS=1.146;MQ=60.00;MQRankSum=-0.510;QD=18.18;ReadPosRankSum=1.376;SOR=0.844	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2105
1	21024901	rs522496	C	T	3367.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;ClippingRankSum=-2.151;DB;DP=55;FS=7.633;MQ=60.00;MQRankSum=2.190;QD=15.96;ReadPosRankSum=-0.524;SOR=1.229	GT:AD:DP:GQ:PL	0/1:35,20:55:99:709,0,1313
1	21030777	rs148501971	TGGGCCGTCTCCAACCA	T	1067.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.178;ClippingRankSum=-0.665;DB;DP=50;FS=0.000;MQ=60.08;MQRankSum=0.337;QD=20.52;ReadPosRankSum=0.278;SOR=0.076	GT:AD:DP:GQ:PL	0/1:22,28:50:99:1107,0,4209
1	21030815	rs35569152	C	T	1062.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.442;ClippingRankSum=0.406;DB;DP=52;FS=0.000;MQ=60.07;MQRankSum=1.093;QD=20.43;ReadPosRankSum=1.505;SOR=0.046	GT:AD:DP:GQ:PL	0/1:24,28:52:99:1093,0,3656
1	21036265	rs33996125	C	T	2874.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;ClippingRankSum=0.610;DB;DP=162;FS=0.810;MQ=60.00;MQRankSum=-1.525;QD=17.74;ReadPosRankSum=0.313;SOR=0.534	GT:AD:DP:GQ:PL	0/1:83,79:162:99:2905,0,3096
1	21040079	rs10799661	C	A	887.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.042;DB;DP=67;FS=1.816;MQ=60.00;MQRankSum=1.002;QD=13.24;ReadPosRankSum=0.696;SOR=0.968	GT:AD:DP:GQ:PL	0/1:41,26:67:99:918,0,1533
1	21040151	rs10916851	G	A	1308.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=-0.702;DB;DP=43;FS=0.000;MQ=60.00;MQRankSum=1.448;QD=18.17;ReadPosRankSum=0.483;SOR=0.470	GT:AD:DP:GQ:PL	0/1:21,22:43:99:773,0,793
1	21042300	rs554111	C	G	481.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=-0.126;DB;DP=20;FS=0.000;MQ=60.00;MQRankSum=-0.754;QD=24.06;ReadPosRankSum=1.615;SOR=0.304	GT:AD:DP:GQ:PL	0/1:7,13:20:99:512,0,242
1	21043926	rs604645	T	C	1248.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.551;DB;DP=96;FS=9.996;MQ=60.00;MQRankSum=1.599;QD=13.00;ReadPosRankSum=0.857;SOR=0.162	GT:AD:DP:GQ:PL	0/1:59,37:96:99:1279,0,2276
1	21044161	rs601329	A	G	923.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.729;DB;DP=79;FS=4.814;MQ=60.00;MQRankSum=-0.499;QD=11.69;ReadPosRankSum=1.656;SOR=1.373	GT:AD:DP:GQ:PL	0/1:51,28:79:99:954,0,1966
1	21044219	rs601392	A	C	4650.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=-1.572;DB;DP=58;FS=3.431;MQ=60.00;MQRankSum=0.533;QD=24.22;ReadPosRankSum=0.608;SOR=1.149	GT:AD:DP:GQ:PL	0/1:32,26:58:99:945,0,1201
1	21048999	rs12755295	G	A	156.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=-0.840;DB;DP=10;FS=2.178;MQ=60.00;MQRankSum=0.180;QD=15.61;ReadPosRankSum=0.060;SOR=0.238	GT:AD:DP:GQ:PL	0/1:5,5:10:99:187,0,173
1	21050958	rs592060	C	T	8318.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=1.211;DB;DP=110;FS=3.903;MQ=60.00;MQRankSum=-0.777;QD=23.63;ReadPosRankSum=0.927;SOR=0.512	GT:AD:DP:GQ:PL	0/1:57,53:110:99:1898,0,2114
1	21054726	rs646786	A	G	358.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=-0.399;DB;DP=17;FS=0.000;MQ=60.00;MQRankSum=0.428;QD=21.07;ReadPosRankSum=1.255;SOR=0.105	GT:AD:DP:GQ:PL	0/1:7,10:17:99:389,0,222
1	21058655	rs113664832	G	A	259.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=-0.747;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.747;QD=32.40;ReadPosRankSum=0.747;SOR=1.402	GT:AD:DP:GQ:PL	0/1:1,1:2:32:35,0,32
1	21071419	rs17448349	G	A	1021.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.750;DB;DP=61;FS=2.560;MQ=60.00;MQRankSum=-0.661;QD=16.74;ReadPosRankSum=0.314;SOR=0.475	GT:AD:DP:GQ:PL	0/1:32,29:61:99:1052,0,1211
1	21076274	rs12729575	G	A	1070.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.695;ClippingRankSum=0.607;DB;DP=57;FS=3.833;MQ=60.00;MQRankSum=0.392;QD=18.77;ReadPosRankSum=2.258;SOR=1.153	GT:AD:DP:GQ:PL	0/1:28,29:57:99:1101,0,1053
1	21091861	rs1985278	G	T	9137.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=-2.202;DB;DP=81;FS=0.876;MQ=60.00;MQRankSum=-0.530;QD=34.74;ReadPosRankSum=-1.217;SOR=0.891	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1539,0,1419
1	21092064	rs41265093	G	A	1383.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.213;DB;DP=67;FS=2.152;MQ=60.00;MQRankSum=-0.508;QD=20.34;ReadPosRankSum=0.199;SOR=1.456	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1414,0,1027
1	21097584	rs17408249	A	T	1104.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=-1.231;DB;DP=65;FS=2.002;MQ=60.00;MQRankSum=-0.409;QD=16.99;ReadPosRankSum=0.453;SOR=0.453	GT:AD:DP:GQ:PL	0/1:33,32:65:99:1135,0,1227
1	21099846	rs589755	A	G	212.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=-0.386;DB;DP=26;FS=0.000;MQ=60.00;MQRankSum=1.391;QD=8.16;ReadPosRankSum=1.473;SOR=0.016	GT:AD:DP:GQ:PL	0/1:17,9:26:99:243,0,661
1	21102502	.	CA	C	297.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=-1.176;DP=24;FS=1.189;MQ=60.25;MQRankSum=-0.445;QD=2.26;ReadPosRankSum=-0.366;SOR=1.028	GT:AD:DP:GQ:PL	0/1:15,9:24:94:94,0,189
1	21106416	rs33936601	G	C	1091.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.421;DB;DP=52;FS=0.000;MQ=60.00;MQRankSum=0.414;QD=20.98;ReadPosRankSum=0.020;SOR=0.585	GT:AD:DP:GQ:PL	0/1:23,29:52:99:1122,0,806
1	21143758	rs34997349	A	T	590.13	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.206;ClippingRankSum=-0.386;DB;DP=30;FS=0.000;MQ=58.75;MQRankSum=1.274;QD=19.67;ReadPosRankSum=-0.243;SOR=0.292	GT:AD:DP:GQ:PL	0/1:15,15:30:99:621,0,658
1	21143762	rs35569463	T	A	2255.16	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.545;ClippingRankSum=2.019;DB;DP=33;FS=5.643;MQ=59.08;MQRankSum=1.058;QD=29.29;ReadPosRankSum=-1.378;SOR=3.417	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1447,99,0
1	21143770	rs67383541	TA	T	2963.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=-1.861;DB;DP=33;FS=0.000;MQ=59.88;MQRankSum=0.389;QD=27.32;ReadPosRankSum=-0.238;SOR=1.426	GT:AD:DP:GQ:PL	0/1:17,16:33:99:618,0,708
1	21143777	rs71014118	A	AT	748.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=1.484;DB;DP=36;FS=0.000;MQ=60.20;MQRankSum=2.200;QD=20.78;ReadPosRankSum=0.200;SOR=0.245	GT:AD:DP:GQ:PL	0/1:17,19:36:99:788,0,654
1	21143782	rs76848587	A	AAT	3586.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=-0.058;DB;DP=40;FS=4.070;MQ=60.29;MQRankSum=-1.987;QD=34.15;ReadPosRankSum=0.732;SOR=2.618	GT:AD:DP:GQ:PL	0/1:23,17:40:99:645,0,895
1	21143783	rs75532916	A	T	859.13	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.331;DB;DP=40;FS=2.934;MQ=60.57;MQRankSum=0.470;QD=21.48;ReadPosRankSum=-0.221;SOR=0.149	GT:AD:DP:GQ:PL	0/1:17,23:40:99:890,0,645
1	21151580	rs72652913	G	T	366.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=-0.456;DB;DP=34;FS=2.818;MQ=60.00;MQRankSum=-0.669;QD=10.77;ReadPosRankSum=0.496;SOR=1.267	GT:AD:DP:GQ:PL	0/1:21,13:34:99:397,0,668
1	21151742	.	C	A	30.72	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.176;ClippingRankSum=1.344;DP=33;FS=9.113;MQ=60.41;MQRankSum=-0.180;QD=0.88;ReadPosRankSum=2.737;SOR=2.468	GT:AD:DP:GQ:PL	0/1:26,7:33:58:58,0,809
1	21167404	rs2230573	A	G	6147.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.000;MQ=60.00;QD=32.68;SOR=1.693	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1691,120,0
1	21175855	rs7525082	C	A	6629.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.000;MQ=60.00;QD=30.33;SOR=8.675	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1806,123,0
1	21179969	rs7542882	G	A	3980.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=60.00;QD=28.10;SOR=3.540	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1324,93,0
1	21180181	rs2305463	C	T	3593.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.588;DB;DP=30;FS=0.000;MQ=60.00;MQRankSum=0.141;QD=34.88;ReadPosRankSum=0.433;SOR=0.846	GT:AD:DP:GQ:PL	0/1:14,16:30:99:587,0,500
1	21180250	rs7543140	G	A	3063.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=60.00;QD=29.17;SOR=7.140	GT:AD:DP:GQ:PL	1/1:0,22:22:66:943,66,0
1	21183841	rs12728404	T	G	1292.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=-0.127;DB;DP=74;FS=1.726;MQ=60.00;MQRankSum=0.501;QD=17.23;ReadPosRankSum=1.245;SOR=0.869	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1323,0,1292
1	21188703	rs10916885	A	T	4012.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=-0.214;DB;DP=62;FS=2.326;MQ=60.00;MQRankSum=-0.322;QD=18.75;ReadPosRankSum=0.508;SOR=0.966	GT:AD:DP:GQ:PL	0/1:38,24:62:99:488,0,1456
1	21191416	rs3816454	T	G	7151.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.000;MQ=60.00;QD=34.73;SOR=0.983	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1851,132,0
1	21191430	rs3816455	A	G	6500.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=-0.321;DB;DP=49;FS=1.956;MQ=60.00;MQRankSum=-0.659;QD=30.95;ReadPosRankSum=1.231;SOR=0.472	GT:AD:DP:GQ:PL	0/1:20,29:49:99:1104,0,689
1	21206063	rs12724377	T	C	628.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=-0.775;DB;DP=37;FS=0.000;MQ=60.00;MQRankSum=-0.505;QD=16.98;ReadPosRankSum=0.405;SOR=0.024	GT:AD:DP:GQ:PL	0/1:19,18:37:99:659,0,670
1	21220375	rs2275468	T	G	2725.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=60.00;QD=31.33;SOR=8.349	GT:AD:DP:GQ:PL	1/1:0,22:22:66:961,66,0
1	21276433	rs17417114	C	T	1552.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;ClippingRankSum=-0.712;DB;DP=74;FS=2.591;MQ=60.00;MQRankSum=0.695;QD=20.97;ReadPosRankSum=1.068;SOR=0.468	GT:AD:DP:GQ:PL	0/1:31,43:74:99:1583,0,1093
1	21299377	.	TA	T	17.28	INDEL_LowQualityDepth;LowQual	AC=0;AF=0.00;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.747;DP=16;FS=0.000;MQ=60.00;MQRankSum=-0.625;QD=0.96;ReadPosRankSum=0.749;SOR=0.025	GT:AD:DP:GQ:PL	0/0:15,1:16:20:0,20,377
1	21307743	.	A	AT	212.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.519;DP=37;FS=0.000;MQ=60.35;MQRankSum=0.895;QD=4.42;ReadPosRankSum=-0.184;SOR=0.412	GT:AD:DP:GQ:PL	0/1:21,16:37:99:252,0,392
1	21315574	.	GGGAGA	G	496.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.355;DP=9;FS=0.000;MQ=53.25;MQRankSum=-1.388;QD=26.13;ReadPosRankSum=0.290;SOR=1.426	GT:AD:DP:GQ:PL	1/1:0,9:9:26:322,26,0
1	21324410	.	T	TA	15.53	INDEL_LowQualityDepth;LowQual	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.099;DP=5;FS=0.000;MQ=60.00;MQRankSum=0.690;QD=0.86;ReadPosRankSum=0.591;SOR=0.169	GT:AD:DP:GQ:PL	0/0:5,0:5:14:0,14,94
1	21327637	rs1395508	C	T	7778.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MQ=60.00;QD=33.16;SOR=1.399	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2056,144,0
1	21377314	rs6426663	C	T	4764.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.000;MQ=60.00;QD=29.39;SOR=4.560	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1413,104,0
1	21502724	.	T	TGCCGCC	58.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=-0.093;DP=12;FS=8.254;MQ=60.15;MQRankSum=-0.279;QD=3.06;ReadPosRankSum=-2.514;SOR=0.851	GT:AD:DP:GQ:PL	0/1:9,3:12:98:98,0,571
1	21553933	rs6665399	T	C	370.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=1.999;DB;DP=26;FS=0.000;MQ=60.00;MQRankSum=0.037;QD=14.24;ReadPosRankSum=1.777;SOR=0.021	GT:AD:DP:GQ:PL	0/1:14,12:26:99:401,0,537
1	21554319	rs6426676	A	G	3028.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=-0.673;DB;DP=43;FS=1.161;MQ=60.00;MQRankSum=-1.304;QD=22.94;ReadPosRankSum=-0.650;SOR=0.456	GT:AD:DP:GQ:PL	0/1:23,20:43:99:677,0,853
1	21554554	rs190487320	A	C	1191.13	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=-0.360;DB;DP=62;FS=0.858;MQ=60.00;MQRankSum=-0.239;QD=18.91;ReadPosRankSum=0.239;SOR=0.552	GT:AD:DP:GQ:PL	0/1:31,31:62:99:1222,0,2206
1	21554555	rs182680239	G	C	1191.13	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=-0.668;DB;DP=63;FS=0.000;MQ=60.00;MQRankSum=0.811;QD=18.61;ReadPosRankSum=0.209;SOR=0.611	GT:AD:DP:GQ:PL	0/1:31,32:63:99:1222,0,2206
1	21554573	rs3026901	C	T	585.13	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.863;DB;DP=62;FS=3.372;MQ=60.00;MQRankSum=0.664;QD=14.27;ReadPosRankSum=0.928;SOR=0.263	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,186,2623
1	21560253	rs28368029	G	C	681.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.220;ClippingRankSum=0.215;DB;DP=37;FS=8.965;MQ=60.00;MQRankSum=0.881;QD=18.41;ReadPosRankSum=0.838;SOR=2.476	GT:AD:DP:GQ:PL	0/1:18,19:37:99:712,0,672
1	21571601	rs12562197	G	A	831.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.505;ClippingRankSum=0.762;DB;DP=50;FS=2.723;MQ=60.00;MQRankSum=-1.851;QD=16.62;ReadPosRankSum=0.673;SOR=1.069	GT:AD:DP:GQ:PL	0/1:27,23:50:99:862,0,1016
1	21573603	rs212513	C	T	787.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.023;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=-0.775;QD=21.86;ReadPosRankSum=1.248;SOR=0.604	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1650
1	21573722	rs2229450	G	A	1311.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;ClippingRankSum=-0.438;DB;DP=69;FS=3.138;MQ=60.00;MQRankSum=-0.743;QD=18.73;ReadPosRankSum=0.148;SOR=1.051	GT:AD:DP:GQ:PL	0/1:33,36:69:99:1342,0,1181
1	21582348	rs2076282	T	C	890.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.463;DB;DP=58;FS=0.000;MQ=60.00;MQRankSum=0.382;QD=15.35;ReadPosRankSum=-0.524;SOR=0.026	GT:AD:DP:GQ:PL	0/1:32,26:58:99:921,0,1171
1	21582425	rs212522	C	T	843.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.492;ClippingRankSum=-0.104;DB;DP=65;FS=0.000;MQ=60.00;MQRankSum=0.258;QD=12.97;ReadPosRankSum=1.594;SOR=0.682	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,196,2809
1	21583973	rs3026879	A	G	1838.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=-0.867;DB;DP=90;FS=3.155;MQ=60.00;MQRankSum=-0.403;QD=20.42;ReadPosRankSum=2.124;SOR=0.957	GT:AD:DP:GQ:PL	0/1:39,51:90:99:1869,0,1389
1	21584941	rs212526	T	C	1370.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.527;DB;DP=35;FS=0.000;MQ=60.00;MQRankSum=0.291;QD=17.34;ReadPosRankSum=-0.742;SOR=0.897	GT:AD:DP:GQ:PL	0/1:17,18:35:99:620,0,636
1	21585014	rs212527	C	T	1704.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.679;ClippingRankSum=-0.751;DB;DP=77;FS=3.158;MQ=60.00;MQRankSum=1.426;QD=21.57;ReadPosRankSum=-0.490;SOR=1.393	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,231,3300
1	21616932	rs142246501	G	T	123.01	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.694;ClippingRankSum=-0.540;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=-0.540;QD=24.60;ReadPosRankSum=0.540;SOR=1.329	GT:AD:DP:GQ:PL	0/0:2,0:2:6:0,6,84
1	21671943	rs2072654	T	G	131.27	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.097;ClippingRankSum=-0.392;DB;DP=8;FS=0.000;MQ=60.00;MQRankSum=-0.548;QD=9.38;ReadPosRankSum=-0.470;SOR=0.663	GT:AD:DP:GQ:PL	0/0:8,0:8:24:0,24,312
1	21671973	rs114921587	G	A	91.33	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.592;ClippingRankSum=1.066;DB;DP=8;FS=0.000;MQ=60.00;MQRankSum=0.118;QD=30.44;ReadPosRankSum=-1.066;SOR=0.330	GT:AD:DP:GQ:PL	0/0:8,0:8:24:0,24,309
1	21751068	rs71512975	C	G	8747.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=79;FS=0.000;MQ=29.36;QD=33.14;SOR=6.107	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2711,238,0
1	21751116	rs200628132	G	C	2799.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=-0.625;DB;DP=102;FS=21.922;MQ=31.46;MQRankSum=4.240;QD=8.72;ReadPosRankSum=-0.220;SOR=2.437	GT:AD:DP:GQ:PL	0/1:74,28:102:99:805,0,2255
1	21751142	rs150916531	A	G	8355.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=-1.113;DB;DP=97;FS=7.472;MQ=32.12;MQRankSum=6.051;QD=25.40;ReadPosRankSum=0.561;SOR=1.368	GT:AD:DP:GQ:PL	0/1:13,84:97:99:2856,0,122
1	21751214	rs72476501	G	A	10932.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=1.286;DB;DP=176;FS=12.073;MQ=35.63;MQRankSum=1.790;QD=18.50;ReadPosRankSum=1.237;SOR=0.884	GT:AD:DP:GQ:PL	0/1:68,108:176:99:3558,0,1978
1	21751814	rs201161295	C	T	118.59	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;ClippingRankSum=-0.731;DB;DP=2;FS=0.000;MQ=32.82;MQRankSum=0.731;QD=23.72;ReadPosRankSum=-0.731;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
1	21751868	rs199833238	T	C	66.62	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=1;FS=0.000;MQ=27.00;MQRankSum=0.727;QD=22.21;ReadPosRankSum=-0.727;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:32,3,0
1	21752682	rs71512992	G	A	252.92	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=-0.162;DB;DP=59;FS=9.527;MQ=32.83;MQRankSum=-3.981;QD=1.41;ReadPosRankSum=2.184;SOR=0.144	GT:AD:DP:GQ:PL	0/1:52,7:59:40:40,0,1609
1	21752746	rs140646278	G	A	2808.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.188;ClippingRankSum=-0.808;DB;DP=62;FS=18.810;MQ=32.97;MQRankSum=5.634;QD=13.91;ReadPosRankSum=0.867;SOR=1.995	GT:AD:DP:GQ:PL	0/1:32,30:62:99:955,0,972
1	21752766	rs144829292	A	G	832.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=-0.274;DB;DP=53;FS=2.981;MQ=32.68;MQRankSum=-3.993;QD=4.73;ReadPosRankSum=-0.334;SOR=0.387	GT:AD:DP:GQ:PL	0/1:45,8:53:99:141,0,1825
1	21752782	rs140348908	T	G	796.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.358;DB;DP=46;FS=23.020;MQ=32.34;MQRankSum=-4.804;QD=5.11;ReadPosRankSum=-1.565;SOR=0.330	GT:AD:DP:GQ:PL	0/1:40,6:46:95:95,0,1623
1	21752830	rs139145324	C	T	37.92	SNP_LowQualityDepth;SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=3.598;ClippingRankSum=0.455;DB;DP=44;FS=14.685;MQ=34.26;MQRankSum=-5.316;QD=0.33;ReadPosRankSum=1.749;SOR=2.407	GT:AD:DP:GQ:PL	0/0:41,3:44:36:0,36,1284
1	21752882	rs200097127	A	G	37.22	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.633;DB;DP=39;FS=59.868;MQ=36.77;MQRankSum=-2.057;QD=0.54;ReadPosRankSum=-1.001;SOR=3.585	GT:AD:DP:GQ:PL	0/1:35,4:39:21:21,0,1161
1	21753468	rs200991536	T	A	1698.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.044;DB;DP=29;FS=0.000;MQ=36.76;MQRankSum=1.444;QD=18.67;ReadPosRankSum=-0.376;SOR=0.843	GT:AD:DP:GQ:PL	0/1:11,18:29:99:639,0,334
1	21753562	rs146549873	A	C	185.46	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=-0.481;DB;DP=22;FS=7.252;MQ=37.91;MQRankSum=-2.144;QD=2.90;ReadPosRankSum=-4.315;SOR=1.915	GT:AD:DP:GQ:PL	0/1:19,3:22:16:16,0,653
1	21753584	rs181635696	A	T	122.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.794;ClippingRankSum=1.056;DB;DP=31;FS=2.300;MQ=39.58;MQRankSum=-0.918;QD=4.70;ReadPosRankSum=0.877;SOR=1.383	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1220
1	21754711	.	G	C	430.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=-1.286;DP=11;FS=9.032;MQ=34.12;MQRankSum=0.373;QD=14.36;ReadPosRankSum=0.083;SOR=0.090	GT:AD:DP:GQ:PL	0/1:6,5:11:99:139,0,170
1	21754981	rs148590544	C	G	3503.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.939;DB;DP=90;FS=2.924;MQ=38.08;MQRankSum=0.297;QD=14.24;ReadPosRankSum=-1.039;SOR=0.514	GT:AD:DP:GQ:PL	0/1:52,38:90:99:1105,0,1609
1	21754996	rs12024079	C	T	9664.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=93;FS=0.000;MQ=34.18;QD=28.23;SOR=1.044	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3754,283,0
1	21755013	rs201191572	C	T	3061.92	SNP_MappingQuality;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=-0.730;DB;DP=81;FS=3.728;MQ=34.57;MQRankSum=-0.269;QD=13.49;ReadPosRankSum=0.749;SOR=0.942	GT:AD:DP:GQ:PL	0/1:47,34:81:99:1016,0,1412
1	21755055	rs12024104	C	A	9495.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.000;MQ=36.03;QD=27.85;SOR=1.487	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3354,258,0
1	21755135	rs41302024	T	G	5146.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.166;DB;DP=97;FS=7.327;MQ=36.41;MQRankSum=-0.162;QD=18.12;ReadPosRankSum=1.650;SOR=0.408	GT:AD:DP:GQ:PL	0/1:37,60:97:99:2043,0,1156
1	21755188	rs41306571	C	G	2008.16	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=1.179;ClippingRankSum=-0.464;DB;DP=88;FS=5.224;MQ=36.84;MQRankSum=-0.301;QD=14.45;ReadPosRankSum=1.015;SOR=0.730	GT:AD:DP:GQ:PL	0/0:88,0:88:99:0,264,3476
1	21755345	rs41302023	T	C	4842.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.720;DB;DP=102;FS=2.107;MQ=54.05;MQRankSum=0.498;QD=18.00;ReadPosRankSum=1.688;SOR=0.566	GT:AD:DP:GQ:PL	0/1:47,55:102:99:1977,0,1738
1	21755347	rs41310392	C	T	4670.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;ClippingRankSum=0.313;DB;DP=100;FS=2.122;MQ=53.58;MQRankSum=-0.693;QD=17.30;ReadPosRankSum=0.402;SOR=0.849	GT:AD:DP:GQ:PL	0/1:53,47:100:99:1605,0,2150
1	21755453	rs3856177	G	A	4685.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=38.39;QD=27.68;SOR=2.183	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1659,126,0
1	21755539	rs3855556	C	A	7532.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.000;MQ=37.46;QD=28.85;SOR=1.053	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2373,180,0
1	21755756	rs56343055	G	C	16297.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;FS=0.000;MQ=49.08;QD=27.68;SOR=1.001	GT:AD:DP:GQ:PL	1/1:0,130:130:99:5429,391,0
1	21755867	rs7522332	A	G	8252.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MQ=35.28;QD=32.38;SOR=0.934	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2007,162,0
1	21755906	rs3738922	G	A	8599.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.000;MQ=44.75;QD=30.68;SOR=2.552	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2501,186,0
1	21756008	rs3894725	G	T	9804.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;FS=0.000;MQ=47.23;QD=30.26;SOR=5.215	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3408,252,0
1	21756069	rs7532750	G	A	5314.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.000;MQ=37.08;QD=29.32;SOR=6.651	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1253,99,0
1	21766663	rs1566523	G	C	93.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=1.231;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=0.358;QD=18.63;ReadPosRankSum=0.358;SOR=1.179	GT:AD:DP:GQ:PL	0/1:2,1:3:36:36,0,74
1	21795388	rs1827293	A	G	7077.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.590;ClippingRankSum=0.371;DB;DP=77;FS=0.540;MQ=60.04;MQRankSum=-3.265;QD=26.11;ReadPosRankSum=1.128;SOR=0.785	GT:AD:DP:GQ:PL	0/1:36,41:77:99:1501,0,1244
1	21795432	rs35175190	G	GA	2720.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=-0.352;DB;DP=68;FS=0.977;MQ=60.04;MQRankSum=0.088;QD=15.91;ReadPosRankSum=1.071;SOR=0.856	GT:AD:DP:GQ:PL	0/1:42,26:68:99:845,0,1456
1	21797996	rs2004380	G	A	4359.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.226;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=0.863;QD=29.45;ReadPosRankSum=-0.393;SOR=0.819	GT:AD:DP:GQ:PL	0/1:16,23:39:99:855,0,576
1	21799489	rs1971327	T	C	10402.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;FS=0.000;MQ=60.00;QD=25.56;SOR=4.668	GT:AD:DP:GQ:PL	1/1:0,71:71:99:3081,214,0
1	21799823	rs1971328	A	G	9550.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.000;MQ=59.91;QD=29.76;SOR=6.138	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2426,171,0
1	21799924	rs80145424	G	A	4461.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=-0.748;DB;DP=81;FS=5.779;MQ=58.23;MQRankSum=0.211;QD=19.23;ReadPosRankSum=1.024;SOR=1.066	GT:AD:DP:GQ:PL	0/1:33,48:81:99:1811,0,1191
1	21801346	rs7531217	G	A	8236.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=54.74;QD=34.45;SOR=1.951	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1824,126,0
1	21804815	rs7535654	T	G	15142.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;FS=0.000;MQ=57.70;QD=30.38;SOR=2.954	GT:AD:DP:GQ:PL	1/1:0,81:81:99:3495,243,0
1	21805730	rs2316504	A	G	8058.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=58.38;QD=29.73;SOR=5.994	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1925,135,0
1	21805978	rs4654948	G	A	9814.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.000;MQ=58.75;QD=31.99;SOR=3.681	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2366,165,0
1	21806447	rs3820296	T	C	3346.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=-1.325;DB;DP=47;FS=0.000;MQ=57.24;MQRankSum=-4.397;QD=23.73;ReadPosRankSum=0.836;SOR=1.187	GT:AD:DP:GQ:PL	0/1:31,16:47:99:557,0,1201
1	21806619	rs3820294	T	C	268.08	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=-1.077;DB;DP=43;FS=35.030;MQ=56.04;MQRankSum=-4.928;QD=5.59;ReadPosRankSum=-4.281;SOR=4.800	GT:AD:DP:GQ:PL	0/1:40,3:43:45:45,0,1710
1	21806621	rs3820293	T	G	434.91	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.613;DB;DP=45;FS=37.226;MQ=55.97;MQRankSum=-5.202;QD=8.70;ReadPosRankSum=-4.222;SOR=4.974	GT:AD:DP:GQ:PL	0/1:41,4:45:39:39,0,1781
1	21806624	rs3820292	A	G	426.92	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=1.183;DB;DP=46;FS=46.599;MQ=55.95;MQRankSum=-6.261;QD=7.76;ReadPosRankSum=-5.310;SOR=5.669	GT:AD:DP:GQ:PL	0/1:42,4:46:30:30,0,1780
1	21806667	rs12043777	C	G	1539.16	SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=2.566;ClippingRankSum=-0.220;DB;DP=42;FS=60.312;MQ=49.79;MQRankSum=-9.283;QD=11.49;ReadPosRankSum=0.669;SOR=6.349	GT:AD:DP:GQ:PL	0/1:36,6:42:99:107,0,1362
1	21806710	rs12034222	T	G	2375.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.491;ClippingRankSum=-0.323;DB;DP=38;FS=39.114;MQ=42.96;MQRankSum=-7.789;QD=19.00;ReadPosRankSum=2.585;SOR=5.588	GT:AD:DP:GQ:PL	0/1:28,10:38:99:292,0,1048
1	21806751	rs12083322	C	T	1931.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=1.105;DB;DP=37;FS=9.202;MQ=39.95;MQRankSum=4.434;QD=24.76;ReadPosRankSum=1.754;SOR=0.042	GT:AD:DP:GQ:PL	0/1:14,23:37:99:815,0,493
1	21806792	rs56286426	C	T	863.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=-1.178;DB;DP=35;FS=3.693;MQ=39.61;MQRankSum=-4.269;QD=9.81;ReadPosRankSum=-0.049;SOR=1.668	GT:AD:DP:GQ:PL	0/1:26,9:35:99:291,0,967
1	21807367	rs201117263	TA	T	645.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MQ=35.43;QD=30.76;SOR=2.531	GT:AD:DP:GQ:PL	1/1:0,8:8:24:297,24,0
1	21807405	rs146754754	T	A	284.13	SNP_MappingQuality	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.170;ClippingRankSum=-0.589;DB;DP=37;FS=0.000;MQ=31.01;MQRankSum=-0.440;QD=6.93;ReadPosRankSum=-2.207;SOR=0.737	GT:AD:DP:GQ:PL	0/0:37,0:37:99:0,111,1330
1	21807427	rs116579083	G	T	84.13	SNP_LowQualityDepth;SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=-0.004;DB;DP=49;FS=5.885;MQ=30.08;MQRankSum=0.534;QD=1.72;ReadPosRankSum=-1.010;SOR=1.558	GT:AD:DP:GQ:PL	0/1:42,7:49:99:115,0,1291
1	21807521	rs200206527	A	T	571.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=-0.618;DB;DP=19;FS=20.892;MQ=30.93;MQRankSum=-0.770;QD=10.59;ReadPosRankSum=0.922;SOR=0.030	GT:AD:DP:GQ:PL	0/1:9,10:19:99:265,0,256
1	21808159	rs71512991	G	A	3359.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=2.669;ClippingRankSum=2.042;DB;DP=47;FS=30.583;MQ=31.66;MQRankSum=1.310;QD=21.68;ReadPosRankSum=1.980;SOR=0.451	GT:AD:DP:GQ:PL	0/1:13,34:47:99:1111,0,263
1	21808207	rs146564096	A	C	1942.16	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.335;ClippingRankSum=-0.112;DB;DP=22;FS=0.000;MQ=33.91;MQRankSum=1.918;QD=30.35;ReadPosRankSum=-2.974;SOR=3.716	GT:AD:DP:GQ:PL	1/1:1,21:22:56:799,56,0
1	21808223	rs145079058	T	C	1524.20	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.110;ClippingRankSum=-0.110;DB;DP=18;FS=0.000;MQ=33.47;MQRankSum=2.350;QD=28.23;ReadPosRankSum=-0.499;SOR=3.342	GT:AD:DP:GQ:PL	1/1:1,17:18:22:587,22,0
1	21808281	rs143561157	G	A	329.40	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MQ=30.24;QD=29.95;SOR=3.442	GT:AD:DP:GQ:PL	1/1:0,4:4:12:140,12,0
1	21808307	rs146767219	C	T	428.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=-0.467;DB;DP=13;FS=0.000;MQ=28.99;MQRankSum=-0.411;QD=11.00;ReadPosRankSum=2.082;SOR=1.302	GT:AD:DP:GQ:PL	0/1:7,6:13:99:151,0,196
1	21808949	rs201974927	T	G	378.67	SNP_MappingQuality	AC=2;AF=1.00;AN=2;BaseQRankSum=0.493;ClippingRankSum=1.086;DB;DP=5;FS=0.000;MQ=36.50;MQRankSum=1.678;QD=29.13;ReadPosRankSum=1.086;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
1	21809014	rs200063908	G	C	231.54	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=-0.896;DB;DP=5;FS=0.000;MQ=32.44;MQRankSum=2.228;QD=28.94;ReadPosRankSum=1.769;SOR=1.270	GT:AD:DP:GQ:PL	0/1:1,4:5:11:138,0,11
1	21809051	rs201590042	G	A	214.93	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=-2.037;DB;DP=5;FS=0.000;MQ=32.44;MQRankSum=1.769;QD=19.54;ReadPosRankSum=-1.034;SOR=1.270	GT:AD:DP:GQ:PL	0/1:1,4:5:11:144,0,11
1	21809750	rs202069483	T	C	2894.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.000;MQ=38.67;QD=31.63;SOR=8.497	GT:AD:DP:GQ:PL	1/1:0,13:13:39:545,39,0
1	21809850	rs199951062	T	C	950.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=-0.130;DB;DP=27;FS=0.000;MQ=38.91;MQRankSum=-0.941;QD=15.08;ReadPosRankSum=1.917;SOR=0.210	GT:AD:DP:GQ:PL	0/1:13,14:27:99:476,0,475
1	21809924	rs200210375	G	C	1523.91	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MQ=38.56;QD=29.42;SOR=7.428	GT:AD:DP:GQ:PL	1/1:0,7:7:21:243,21,0
1	21880818	rs61491376	C	CAT,CATAT	3563.86	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=1.584;DB;DP=35;FS=0.000;MQ=60.16;MQRankSum=0.041;QD=26.80;ReadPosRankSum=0.284;SOR=2.562	GT:AD:DP:GQ:PL	1/2:0,5,30:35:49:1421,1067,978,142,0,49
1	21887290	rs1767430	C	A	4321.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.191;DB;DP=67;FS=0.954;MQ=60.00;MQRankSum=0.174;QD=17.43;ReadPosRankSum=2.652;SOR=0.513	GT:AD:DP:GQ:PL	0/1:37,30:67:99:1058,0,1353
1	21889506	rs1256336	C	T	531.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.479;DB;DP=27;FS=4.673;MQ=60.00;MQRankSum=-0.254;QD=18.97;ReadPosRankSum=1.864;SOR=1.661	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1183
1	21889635	rs1780316	T	C	7678.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;FS=0.000;MQ=60.00;QD=28.31;SOR=1.128	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2384,166,0
1	21889784	rs35423948	CG	C	312.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0.738;DB;DP=32;FS=4.572;MQ=60.00;MQRankSum=-0.272;QD=8.00;ReadPosRankSum=-2.054;SOR=1.377	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,1041
1	21890464	rs1767428	A	G	5121.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.000;MQ=60.00;QD=25.33;SOR=4.720	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1634,119,0
1	21896767	rs1256328	C	T	3118.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=-0.012;DB;DP=66;FS=8.660;MQ=60.00;MQRankSum=-1.930;QD=18.78;ReadPosRankSum=1.092;SOR=1.157	GT:AD:DP:GQ:PL	0/1:33,33:66:99:1253,0,1224
1	21900420	rs2275370	A	G	6383.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.038;ClippingRankSum=-0.033;DB;DP=72;FS=0.000;MQ=60.00;MQRankSum=-2.828;QD=28.12;ReadPosRankSum=-1.094;SOR=0.686	GT:AD:DP:GQ:PL	0/1:28,44:72:99:1639,0,1009
1	21900459	rs35488260	A	C	970.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.540;ClippingRankSum=1.096;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=0.401;QD=15.40;ReadPosRankSum=0.478;SOR=0.319	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,169,2424
1	21902436	rs61778393	G	T	3229.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.249;ClippingRankSum=0.620;DB;DP=99;FS=0.502;MQ=60.00;MQRankSum=-0.042;QD=16.15;ReadPosRankSum=1.178;SOR=0.728	GT:AD:DP:GQ:PL	0/0:99,0:99:99:0,298,4220
1	21904131	rs34605986	T	C	1963.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=-0.648;DB;DP=49;FS=0.000;MQ=60.00;MQRankSum=0.418;QD=15.58;ReadPosRankSum=0.745;SOR=0.460	GT:AD:DP:GQ:PL	0/1:26,23:49:99:832,0,954
1	21904206	rs1697405	C	T	3721.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.438;DB;DP=44;FS=0.000;MQ=60.00;MQRankSum=0.924;QD=24.16;ReadPosRankSum=0.666;SOR=0.530	GT:AD:DP:GQ:PL	0/1:23,21:44:99:748,0,849
1	21925108	rs2794278	T	C	3825.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.000;MQ=60.00;QD=32.21;SOR=5.739	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1154,81,0
1	21926187	rs1767445	C	T	1059.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=1.333;DB;DP=17;FS=0.000;MQ=60.00;MQRankSum=-0.662;QD=18.60;ReadPosRankSum=0.503;SOR=0.735	GT:AD:DP:GQ:PL	0/1:10,7:17:99:252,0,388
1	21928344	rs2275366	C	G	1418.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.050;ClippingRankSum=-1.575;DB;DP=36;FS=2.709;MQ=60.00;MQRankSum=-0.763;QD=15.76;ReadPosRankSum=0.008;SOR=0.196	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,107,1470
1	21929260	rs829368	A	G	11027.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;FS=0.000;MQ=60.00;QD=31.42;SOR=0.910	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3639,255,0
1	21929456	rs3215988	GC	G	4502.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.14;QD=28.50;SOR=7.195	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1380,135,0
1	21930542	rs3767111	C	T	846.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.458;ClippingRankSum=-0.453;DB;DP=51;FS=0.000;MQ=60.00;MQRankSum=-0.343;QD=20.15;ReadPosRankSum=0.693;SOR=0.702	GT:AD:DP:GQ:PL	0/0:51,0:51:99:0,153,2095
1	21932530	rs1767443	C	A	4099.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=-1.083;DB;DP=55;FS=1.818;MQ=60.00;MQRankSum=0.186;QD=24.40;ReadPosRankSum=1.448;SOR=0.512	GT:AD:DP:GQ:PL	0/1:28,27:55:99:944,0,1038
1	21934667	rs829371	G	A	6612.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=-3.369;DB;DP=71;FS=21.846;MQ=60.00;MQRankSum=0.798;QD=25.53;ReadPosRankSum=2.172;SOR=1.728	GT:AD:DP:GQ:PL	0/1:35,36:71:99:1286,0,1248
1	21934693	rs72660316	T	C	3360.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.033;DB;DP=82;FS=14.307;MQ=60.00;MQRankSum=0.081;QD=18.36;ReadPosRankSum=1.601;SOR=0.269	GT:AD:DP:GQ:PL	0/1:43,39:82:99:1404,0,1638
1	21935433	rs861212	G	T	4488.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.909;ClippingRankSum=0.231;DB;DP=70;FS=1.721;MQ=60.00;MQRankSum=0.600;QD=18.78;ReadPosRankSum=2.138;SOR=0.847	GT:AD:DP:GQ:PL	0/1:35,35:70:99:1328,0,1282
1	21935467	rs12130950	G	A	2590.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.102;DB;DP=63;FS=2.299;MQ=60.00;MQRankSum=0.102;QD=17.74;ReadPosRankSum=2.277;SOR=0.510	GT:AD:DP:GQ:PL	0/1:34,29:63:99:1033,0,1312
1	21935884	rs58808255	GA	G	421.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.314;ClippingRankSum=-0.530;DB;DP=38;FS=5.987;MQ=60.13;MQRankSum=-0.736;QD=8.26;ReadPosRankSum=0.844;SOR=0.027	GT:AD:DP:GQ:PL	0/0:35,3:38:35:0,35,830
1	21935901	.	T	G	134.04	SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.476;ClippingRankSum=-0.351;DP=46;FS=0.000;MQ=60.06;MQRankSum=-0.133;QD=0.78;ReadPosRankSum=0.925;SOR=0.887	GT:AD:DP:GQ:PL	0/1:30,16:46:99:114,0,856
1	21938375	rs2275364	T	G	7572.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.820;DB;DP=108;FS=2.468;MQ=60.00;MQRankSum=0.974;QD=23.66;ReadPosRankSum=0.526;SOR=0.850	GT:AD:DP:GQ:PL	0/1:58,50:108:99:1871,0,2174
1	21939493	rs3767113	G	C	4767.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=-0.555;DB;DP=69;FS=0.870;MQ=60.00;MQRankSum=3.210;QD=20.64;ReadPosRankSum=-1.525;SOR=0.888	GT:AD:DP:GQ:PL	0/1:32,37:69:99:1372,0,1093
1	21939741	rs1256282	G	C	3062.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=-2.399;DB;DP=79;FS=2.583;MQ=60.00;MQRankSum=0.219;QD=17.20;ReadPosRankSum=2.431;SOR=0.475	GT:AD:DP:GQ:PL	0/1:35,44:79:99:1577,0,1244
1	21940555	rs2275363	C	T	4298.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.786;ClippingRankSum=0.925;DB;DP=68;FS=3.485;MQ=60.00;MQRankSum=1.326;QD=22.86;ReadPosRankSum=-0.321;SOR=1.042	GT:AD:DP:GQ:PL	0/1:39,29:68:99:1033,0,1381
1	21943820	rs2275360	G	A	1706.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.262;DB;DP=43;FS=2.433;MQ=60.00;MQRankSum=0.364;QD=15.95;ReadPosRankSum=2.829;SOR=0.958	GT:AD:DP:GQ:PL	0/1:30,13:43:99:426,0,1126
1	21944352	rs748488	A	G	4672.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=-0.643;DB;DP=72;FS=0.000;MQ=60.00;MQRankSum=0.248;QD=18.92;ReadPosRankSum=0.503;SOR=0.592	GT:AD:DP:GQ:PL	0/1:34,38:72:99:1354,0,1247
1	21945530	rs77539762	C	T	1997.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=-0.050;DB;DP=64;FS=0.725;MQ=60.00;MQRankSum=0.389;QD=16.24;ReadPosRankSum=2.370;SOR=0.821	GT:AD:DP:GQ:PL	0/1:39,25:64:99:894,0,1510
1	21946415	rs1681255	G	A	3598.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=-1.788;DB;DP=55;FS=12.063;MQ=60.00;MQRankSum=-0.998;QD=19.45;ReadPosRankSum=0.351;SOR=0.033	GT:AD:DP:GQ:PL	0/1:21,34:55:99:1234,0,742
1	21952884	rs1130564	G	A	661.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.355;DB;DP=44;FS=1.983;MQ=60.00;MQRankSum=1.259;QD=10.66;ReadPosRankSum=0.327;SOR=0.941	GT:AD:DP:GQ:PL	0/0:44,0:44:99:0,132,1906
1	21953304	rs1531829	G	A	2506.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.235;ClippingRankSum=-1.330;DB;DP=141;FS=3.018;MQ=60.00;MQRankSum=-0.918;QD=18.43;ReadPosRankSum=-3.342;SOR=0.386	GT:AD:DP:GQ:PL	0/0:140,1:141:99:0,379,5884
1	21953436	rs829412	A	G	11367.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.857;ClippingRankSum=-0.212;DB;DP=115;FS=1.443;MQ=60.00;MQRankSum=0.216;QD=26.31;ReadPosRankSum=0.992;SOR=0.861	GT:AD:DP:GQ:PL	0/1:54,61:115:99:2279,0,1935
1	21961091	rs829380	C	T	327.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.424;ClippingRankSum=-0.203;DB;DP=34;FS=3.771;MQ=60.00;MQRankSum=-0.888;QD=12.58;ReadPosRankSum=0.064;SOR=0.081	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,101,1418
1	21961339	rs10799706	A	T	8068.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.000;MQ=60.00;QD=26.98;SOR=1.209	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2481,172,0
1	21975923	rs2035449	G	T	2735.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=-0.796;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=-1.267;QD=30.73;ReadPosRankSum=0.616;SOR=2.610	GT:AD:DP:GQ:PL	0/1:11,20:31:99:750,0,368
1	22005665	rs1059218	C	T	4250.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.507;ClippingRankSum=1.469;DB;DP=34;FS=0.950;MQ=60.00;MQRankSum=0.928;QD=26.07;ReadPosRankSum=2.315;SOR=0.554	GT:AD:DP:GQ:PL	0/1:17,17:34:99:595,0,633
1	22007443	rs72660363	C	T	838.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.525;DB;DP=55;FS=0.000;MQ=60.00;MQRankSum=0.876;QD=17.83;ReadPosRankSum=1.689;SOR=0.323	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,165,2373
1	22013561	rs829420	C	A	2681.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.998;DB;DP=24;FS=0.000;MQ=60.00;MQRankSum=-0.407;QD=32.70;ReadPosRankSum=0.949;SOR=2.891	GT:AD:DP:GQ:PL	0/1:15,9:24:99:315,0,575
1	22013771	rs10493008	G	A	5426.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.523;ClippingRankSum=-0.857;DB;DP=42;FS=14.704;MQ=60.00;MQRankSum=-0.928;QD=34.34;ReadPosRankSum=-0.843;SOR=2.111	GT:AD:DP:GQ:PL	0/1:26,16:42:99:564,0,1011
1	22016678	rs111440607	T	TA	681.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;ClippingRankSum=0.444;DB;DP=22;FS=0.000;MQ=60.14;MQRankSum=-0.286;QD=8.97;ReadPosRankSum=0.326;SOR=1.938	GT:AD:DP:GQ:PL	0/1:14,8:22:99:135,0,202
1	22030121	rs55633304	A	G	2877.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.893;DB;DP=48;FS=1.785;MQ=60.00;MQRankSum=-1.364;QD=16.35;ReadPosRankSum=3.479;SOR=0.972	GT:AD:DP:GQ:PL	0/1:6,42:48:28:985,0,28
1	22032472	rs11426922	A	AT	7825.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.000;MQ=60.23;QD=33.44;SOR=0.702	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2572,219,0
1	22033152	rs41265993	G	A	1407.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;ClippingRankSum=-0.447;DB;DP=89;FS=7.794;MQ=60.00;MQRankSum=-0.079;QD=15.81;ReadPosRankSum=0.933;SOR=0.323	GT:AD:DP:GQ:PL	0/1:47,42:89:99:1438,0,1677
1	22033385	.	GA	G	476.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=1.021;DP=45;FS=0.000;MQ=60.12;MQRankSum=1.752;QD=4.21;ReadPosRankSum=-1.269;SOR=1.010	GT:AD:DP:GQ:PL	0/1:20,25:45:99:509,0,353
1	22050649	rs2275668	C	A	11654.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.000;MQ=60.00;QD=26.30;SOR=2.465	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3305,232,0
1	22063149	rs10753517	G	A	6381.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;ClippingRankSum=1.130;DB;DP=46;FS=0.000;MQ=60.00;MQRankSum=-0.883;QD=29.71;ReadPosRankSum=2.370;SOR=0.936	GT:AD:DP:GQ:PL	0/1:25,21:46:99:711,0,848
1	22079457	.	TA	T	132.61	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.871;DP=21;FS=1.122;MQ=60.00;MQRankSum=0.799;QD=1.43;ReadPosRankSum=-1.156;SOR=0.833	GT:AD:DP:GQ:PL	0/0:19,2:21:11:0,11,404
1	22082923	rs10458384	G	A	3649.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.820;ClippingRankSum=-1.149;DB;DP=22;FS=0.000;MQ=60.00;MQRankSum=0.091;QD=26.96;ReadPosRankSum=-0.492;SOR=5.486	GT:AD:DP:GQ:PL	1/1:1,21:22:26:781,26,0
1	22082967	.	CAA	C,CA	1293.09	PASS	AC=0,1;AF=0.00,0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=-1.305;DP=23;FS=5.748;MQ=60.19;MQRankSum=-0.786;QD=11.65;ReadPosRankSum=1.132;SOR=2.335	GT:AD:DP:GQ:PL	0/2:8,3,12:23:76:211,167,407,0,94,76
1	22109370	rs10917042	G	A	3643.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=-1.347;DB;DP=39;FS=2.577;MQ=60.00;MQRankSum=0.407;QD=27.39;ReadPosRankSum=1.412;SOR=0.473	GT:AD:DP:GQ:PL	0/1:20,19:39:99:717,0,745
1	22141206	rs10917051	A	C	8203.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=-0.392;DB;DP=107;FS=19.487;MQ=60.00;MQRankSum=0.526;QD=27.16;ReadPosRankSum=0.352;SOR=1.681	GT:AD:DP:GQ:PL	0/1:56,51:107:99:1859,0,2095
1	22147739	rs72662414	A	C	984.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;ClippingRankSum=-1.073;DB;DP=59;FS=7.429;MQ=60.00;MQRankSum=1.069;QD=16.68;ReadPosRankSum=1.644;SOR=0.113	GT:AD:DP:GQ:PL	0/1:31,28:59:99:1015,0,1109
1	22149935	rs897467	T	C	3533.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.801;ClippingRankSum=-0.263;DB;DP=131;FS=1.301;MQ=60.00;MQRankSum=1.096;QD=14.91;ReadPosRankSum=2.505;SOR=0.570	GT:AD:DP:GQ:PL	0/1:72,59:131:99:2083,0,2677
1	22150257	rs3736357	C	T	1737.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=-0.087;DB;DP=39;FS=4.325;MQ=60.00;MQRankSum=0.232;QD=23.16;ReadPosRankSum=-0.022;SOR=1.396	GT:AD:DP:GQ:PL	0/1:15,24:39:99:937,0,536
1	22155723	rs7518070	T	C	1757.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;ClippingRankSum=-0.221;DB;DP=54;FS=0.817;MQ=60.00;MQRankSum=-0.515;QD=18.30;ReadPosRankSum=2.516;SOR=0.561	GT:AD:DP:GQ:PL	0/1:31,23:54:99:810,0,1094
1	22157689	rs3736355	G	A	4884.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=-0.256;DB;DP=143;FS=3.651;MQ=60.00;MQRankSum=0.264;QD=17.57;ReadPosRankSum=1.490;SOR=0.581	GT:AD:DP:GQ:PL	0/1:66,77:143:99:2723,0,2339
1	22158363	rs4654771	G	A	2403.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.612;DB;DP=58;FS=0.000;MQ=60.00;MQRankSum=-1.388;QD=18.92;ReadPosRankSum=1.307;SOR=0.753	GT:AD:DP:GQ:PL	0/1:24,34:58:99:1238,0,843
1	22160148	rs7547731	C	T	2660.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=2.032;DB;DP=52;FS=7.688;MQ=60.00;MQRankSum=0.189;QD=19.42;ReadPosRankSum=-0.673;SOR=1.316	GT:AD:DP:GQ:PL	0/1:27,25:52:99:949,0,955
1	22163153	rs12567651	A	C	796.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=1.190;DB;DP=16;FS=2.635;MQ=60.00;MQRankSum=0.197;QD=20.95;ReadPosRankSum=-0.252;SOR=1.758	GT:AD:DP:GQ:PL	0/1:7,9:16:99:342,0,259
1	22168216	rs7556412	C	T	2765.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.697;DB;DP=65;FS=1.597;MQ=60.00;MQRankSum=1.390;QD=19.89;ReadPosRankSum=3.566;SOR=0.920	GT:AD:DP:GQ:PL	0/1:28,37:65:99:1333,0,1010
1	22168968	rs66533518	G	A	5667.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.142;ClippingRankSum=0.974;DB;DP=54;FS=0.000;MQ=60.00;MQRankSum=-0.803;QD=30.14;ReadPosRankSum=-0.043;SOR=0.763	GT:AD:DP:GQ:PL	0/1:25,29:54:99:1078,0,894
1	22172458	rs7355045	T	C	410.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=-0.186;DB;DP=11;FS=2.968;MQ=60.00;MQRankSum=-0.473;QD=16.41;ReadPosRankSum=-0.874;SOR=0.158	GT:AD:DP:GQ:PL	0/1:6,5:11:99:179,0,218
1	22174600	rs3767138	A	G	2793.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;ClippingRankSum=0.202;DB;DP=73;FS=4.396;MQ=60.00;MQRankSum=-0.602;QD=18.26;ReadPosRankSum=2.144;SOR=1.095	GT:AD:DP:GQ:PL	0/1:37,36:73:99:1345,0,1392
1	22177119	rs61777200	A	G	621.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.985;DB;DP=18;FS=0.000;MQ=54.39;MQRankSum=1.362;QD=15.53;ReadPosRankSum=-1.646;SOR=0.437	GT:AD:DP:GQ:PL	0/1:10,8:18:99:233,0,380
1	22179673	rs12049614	T	C	1543.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.435;DB;DP=55;FS=6.960;MQ=60.00;MQRankSum=-0.457;QD=15.28;ReadPosRankSum=-0.629;SOR=2.289	GT:AD:DP:GQ:PL	0/1:33,22:55:99:774,0,1244
1	22180244	.	A	AAAAAT	213.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.573;ClippingRankSum=1.329;DP=24;FS=13.851;MQ=59.86;MQRankSum=-1.066;QD=5.92;ReadPosRankSum=0.122;SOR=0.023	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,1150
1	22180548	rs12117402	T	C	3061.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.489;ClippingRankSum=0.601;DB;DP=88;FS=3.613;MQ=60.00;MQRankSum=-0.624;QD=18.55;ReadPosRankSum=0.978;SOR=0.500	GT:AD:DP:GQ:PL	0/1:40,48:88:99:1812,0,1316
1	22183471	rs12024579	A	C	2556.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.518;ClippingRankSum=2.042;DB;DP=90;FS=4.093;MQ=59.95;MQRankSum=-0.665;QD=14.61;ReadPosRankSum=1.065;SOR=0.371	GT:AD:DP:GQ:PL	0/1:50,40:90:99:1372,0,1878
1	22183739	rs2305562	A	G	3826.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.018;DB;DP=121;FS=1.324;MQ=60.00;MQRankSum=0.119;QD=15.68;ReadPosRankSum=0.174;SOR=0.566	GT:AD:DP:GQ:PL	0/1:67,54:121:99:1887,0,2454
1	22186234	rs10917056	A	G	11748.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;FS=0.000;MQ=60.00;QD=26.58;SOR=1.698	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3850,271,0
1	22188825	rs56383840	C	T	544.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.519;DB;DP=12;FS=3.736;MQ=60.00;MQRankSum=-1.505;QD=20.93;ReadPosRankSum=1.349;SOR=2.247	GT:AD:DP:GQ:PL	0/1:7,5:12:99:178,0,255
1	22191454	rs897471	G	A	11700.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;FS=0.000;MQ=60.00;QD=29.04;SOR=1.540	GT:AD:DP:GQ:PL	1/1:0,92:92:99:4023,277,0
1	22199081	rs2501266	A	T	10180.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.000;MQ=60.00;QD=33.10;SOR=0.751	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3764,272,0
1	22199245	rs2229482	C	T	2737.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=1.362;DB;DP=77;FS=0.504;MQ=60.00;MQRankSum=0.578;QD=19.01;ReadPosRankSum=2.236;SOR=0.741	GT:AD:DP:GQ:PL	0/1:38,39:77:99:1460,0,1425
1	22199821	rs2454290	G	A	14074.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;FS=0.000;MQ=60.00;QD=28.19;SOR=3.163	GT:AD:DP:GQ:PL	1/1:0,105:105:99:4471,315,0
1	22200067	rs2247741	A	G	13297.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;FS=0.000;MQ=60.00;QD=28.37;SOR=3.744	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3854,262,0
1	22200082	rs2445136	T	C	11936.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.000;MQ=60.00;QD=29.85;SOR=4.108	GT:AD:DP:GQ:PL	1/1:0,72:72:99:3327,223,0
1	22200835	rs2445135	C	G	6595.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.000;MQ=60.00;QD=30.75;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1774,123,0
1	22201331	rs2290494	C	T	9602.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=-1.833;DB;DP=102;FS=1.623;MQ=60.00;MQRankSum=-1.330;QD=29.27;ReadPosRankSum=-0.295;SOR=0.816	GT:AD:DP:GQ:PL	0/1:45,57:102:99:2135,0,1654
1	22202109	rs2501265	C	T	9966.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.000;MQ=60.00;QD=26.94;SOR=5.513	GT:AD:DP:GQ:PL	1/1:0,70:70:99:3066,211,0
1	22203259	rs2454295	A	G	2503.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.284;DB;DP=72;FS=0.000;MQ=59.95;MQRankSum=-0.258;QD=19.56;ReadPosRankSum=0.229;SOR=0.196	GT:AD:DP:GQ:PL	0/1:36,36:72:99:1342,0,1319
1	22204630	rs7513608	G	A	5659.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=1.896;DB;DP=44;FS=0.000;MQ=60.00;MQRankSum=-0.765;QD=30.43;ReadPosRankSum=1.056;SOR=0.651	GT:AD:DP:GQ:PL	0/1:28,16:44:99:569,0,991
1	22205408	rs2454294	T	C	5405.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.00;QD=29.49;SOR=1.591	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1536,113,0
1	22205466	rs2454293	T	C	5445.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=60.00;QD=28.52;SOR=3.594	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1321,93,0
1	22206649	rs989994	T	C	13649.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;FS=0.000;MQ=60.00;QD=30.74;SOR=1.655	GT:AD:DP:GQ:PL	1/1:0,98:98:99:4208,294,0
1	22206942	rs1874793	G	A	18801.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;FS=0.000;MQ=60.00;QD=27.40;SOR=1.284	GT:AD:DP:GQ:PL	1/1:0,123:123:99:5347,370,0
1	22207235	rs1874792	T	C	8504.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.000;MQ=60.00;QD=27.29;SOR=2.765	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2356,170,0
1	22207804	rs60267433	ACCCAGGGTGGCAG	A	8838.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.000;MQ=60.06;QD=32.00;SOR=1.405	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2648,179,0
1	22208030	rs921847	C	T	5315.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.00;QD=31.49;SOR=4.073	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1697,117,0
1	22211217	rs2290493	G	A	11478.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.674;DB;DP=114;FS=1.494;MQ=60.00;MQRankSum=0.170;QD=28.91;ReadPosRankSum=2.545;SOR=0.602	GT:AD:DP:GQ:PL	0/1:55,59:114:99:2148,0,1994
1	22211222	rs4654994	T	C	18358.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;FS=0.000;MQ=60.00;QD=30.89;SOR=1.809	GT:AD:DP:GQ:PL	1/1:0,118:118:99:5182,358,0
1	22214127	rs2229478	A	G	9143.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.180;DB;DP=110;FS=2.470;MQ=60.00;MQRankSum=-0.705;QD=25.54;ReadPosRankSum=0.037;SOR=0.558	GT:AD:DP:GQ:PL	0/1:55,55:110:99:1973,0,2004
1	22214645	rs3767140	C	A	4274.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=1.031;DB;DP=52;FS=0.000;MQ=60.00;MQRankSum=0.019;QD=27.22;ReadPosRankSum=0.817;SOR=0.766	GT:AD:DP:GQ:PL	0/1:25,27:52:99:1035,0,874
1	22215088	rs2445140	T	C	12060.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;FS=0.000;MQ=60.00;QD=31.26;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,98:98:99:4250,295,0
1	22216279	rs3767141	C	T	6338.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.744;DB;DP=60;FS=1.347;MQ=60.00;MQRankSum=1.237;QD=29.90;ReadPosRankSum=2.509;SOR=0.543	GT:AD:DP:GQ:PL	0/1:24,36:60:99:1347,0,858
1	22216574	rs2254358	C	A	3200.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.131;DB;DP=93;FS=9.076;MQ=60.00;MQRankSum=-1.110;QD=16.24;ReadPosRankSum=2.155;SOR=1.183	GT:AD:DP:GQ:PL	0/1:45,48:93:99:1679,0,1610
1	22216604	rs2254357	C	G	2616.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.404;ClippingRankSum=1.491;DB;DP=88;FS=6.884;MQ=60.00;MQRankSum=-1.103;QD=15.76;ReadPosRankSum=-0.973;SOR=1.153	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1506,0,1691
1	22217108	rs2501260	G	A	16665.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;FS=0.000;MQ=60.00;QD=29.57;SOR=1.243	GT:AD:DP:GQ:PL	1/1:0,109:109:99:4429,324,0
1	22299656	rs4233282	T	G	1694.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=-0.988;DB;DP=40;FS=11.040;MQ=44.38;MQRankSum=-0.465;QD=20.17;ReadPosRankSum=1.493;SOR=0.066	GT:AD:DP:GQ:PL	0/1:19,21:40:99:781,0,662
1	22299854	rs67058297	C	T	3530.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;ClippingRankSum=0.186;DB;DP=35;FS=2.229;MQ=47.24;MQRankSum=-7.959;QD=24.52;ReadPosRankSum=0.395;SOR=1.068	GT:AD:DP:GQ:PL	0/1:16,19:35:99:684,0,603
1	22303702	rs4415533	C	A	7689.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;ClippingRankSum=0.008;DB;DP=89;FS=7.398;MQ=59.02;MQRankSum=2.478;QD=25.80;ReadPosRankSum=1.236;SOR=0.080	GT:AD:DP:GQ:PL	0/1:41,48:89:99:1701,0,1504
1	22304407	rs201379002	GC	G	795.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;ClippingRankSum=-0.594;DB;DP=47;FS=5.380;MQ=33.75;MQRankSum=4.357;QD=7.36;ReadPosRankSum=-3.277;SOR=0.040	GT:AD:DP:GQ:PL	0/1:39,8:47:99:144,0,1242
1	22304428	rs12074015	C	G	5186.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.000;MQ=34.18;QD=29.69;SOR=5.856	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2565,172,0
1	22304429	rs12074016	C	T	5186.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.000;MQ=34.18;QD=28.41;SOR=5.856	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2565,172,0
1	22304463	rs12058649	A	G	6062.90	SNP_MappingQuality;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.000;MQ=35.45;QD=30.42;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2331,184,0
1	22304585	rs12059804	T	C	2985.16	SNP_MappingQuality;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;ClippingRankSum=0.439;DB;DP=102;FS=140.820;MQ=39.88;MQRankSum=-5.148;QD=12.49;ReadPosRankSum=1.808;SOR=3.643	GT:AD:DP:GQ:PL	0/1:81,21:102:99:483,0,2899
1	22304668	rs78360599	G	C	1966.16	SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.803;DB;DP=93;FS=201.677;MQ=42.03;MQRankSum=-4.334;QD=11.17;ReadPosRankSum=-1.158;SOR=7.978	GT:AD:DP:GQ:PL	0/1:75,18:93:99:530,0,3693
1	22304671	rs75406730	T	C	1997.16	SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=1.034;DB;DP=93;FS=209.655;MQ=42.03;MQRankSum=-4.444;QD=11.16;ReadPosRankSum=0.020;SOR=8.086	GT:AD:DP:GQ:PL	0/1:75,18:93:99:530,0,3693
1	22304712	rs10917088	A	G	2470.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.044;ClippingRankSum=0.519;DB;DP=80;FS=1.683;MQ=47.54;MQRankSum=-6.548;QD=16.25;ReadPosRankSum=1.273;SOR=0.567	GT:AD:DP:GQ:PL	0/1:40,40:80:99:1361,0,1321
1	22307252	rs12401939	G	A	2701.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=1.576;DB;DP=26;FS=0.000;MQ=44.18;MQRankSum=3.357;QD=27.56;ReadPosRankSum=0.505;SOR=0.790	GT:AD:DP:GQ:PL	0/1:12,14:26:99:507,0,441
1	22307340	rs7528228	C	T	5922.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=39.42;QD=30.52;SOR=8.497	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1286,93,0
1	22307358	rs7528300	C	G	6290.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.000;MQ=40.00;QD=24.89;SOR=6.036	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1454,102,0
1	22307478	rs72662488	G	A	1379.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.370;ClippingRankSum=0.119;DB;DP=58;FS=12.304;MQ=59.12;MQRankSum=1.714;QD=16.04;ReadPosRankSum=1.229;SOR=1.548	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,175,2486
1	22307538	rs7528405	C	T	8221.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.714;DB;DP=46;FS=6.250;MQ=59.53;MQRankSum=1.143;QD=30.97;ReadPosRankSum=0.518;SOR=2.374	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2006,138,0
1	22307743	rs6689384	T	C	1103.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MQ=46.70;QD=33.62;SOR=6.666	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
1	22307757	rs6691837	T	A	820.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MQ=43.21;QD=29.38;SOR=6.091	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
1	22307763	rs7552634	G	GTAGGGACATAGGGACA	448.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=39.55;QD=28.95;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
1	22310139	rs10733031	T	G	20526.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.973;ClippingRankSum=-1.075;DB;DP=127;FS=0.000;MQ=52.52;MQRankSum=4.326;QD=33.48;ReadPosRankSum=2.389;SOR=2.327	GT:AD:DP:GQ:PL	1/1:0,127:127:99:5777,388,0
1	22310145	rs10733032	C	T	20851.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.909;ClippingRankSum=1.148;DB;DP=129;FS=0.000;MQ=51.18;MQRankSum=4.221;QD=30.68;ReadPosRankSum=0.938;SOR=1.679	GT:AD:DP:GQ:PL	1/1:0,129:129:99:5798,391,0
1	22310262	rs10733033	G	C	29372.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=202;FS=0.000;MQ=40.90;QD=33.49;SOR=0.790	GT:AD:DP:GQ:PL	1/1:0,202:202:99:8390,608,0
1	22310411	rs28468423	A	G	22880.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.776;DB;DP=158;FS=2.348;MQ=41.52;MQRankSum=3.178;QD=35.95;ReadPosRankSum=-0.413;SOR=0.247	GT:AD:DP:GQ:PL	1/1:0,158:158:99:7288,494,0
1	22310413	rs7549398	A	G	22880.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.364;DB;DP=158;FS=2.363;MQ=42.18;MQRankSum=3.198;QD=29.96;ReadPosRankSum=-0.274;SOR=0.229	GT:AD:DP:GQ:PL	1/1:0,158:158:99:7288,494,0
1	22310662	rs6426735	G	T	16771.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;FS=0.000;MQ=60.00;QD=30.97;SOR=0.951	GT:AD:DP:GQ:PL	1/1:0,113:113:99:4817,339,0
1	22310674	rs7538207	C	T	15929.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;FS=0.000;MQ=59.99;QD=29.91;SOR=1.253	GT:AD:DP:GQ:PL	1/1:0,106:106:99:4496,318,0
1	22310725	rs3820287	G	C	13122.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;FS=0.000;MQ=59.99;QD=29.68;SOR=3.295	GT:AD:DP:GQ:PL	1/1:0,102:102:99:4252,305,0
1	22310824	rs1803531	T	C	7170.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.000;MQ=48.77;QD=35.30;SOR=7.488	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2023,147,0
1	22313161	rs1803530	T	C	14808.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;FS=0.000;MQ=52.87;QD=33.00;SOR=2.365	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4520,322,0
1	22313197	rs34963341	C	A	2817.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;ClippingRankSum=2.162;DB;DP=90;FS=0.000;MQ=43.48;MQRankSum=-2.281;QD=17.39;ReadPosRankSum=2.215;SOR=0.673	GT:AD:DP:GQ:PL	0/1:42,48:90:99:1736,0,1481
1	22313371	rs34262568	G	A	4815.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=3.170;ClippingRankSum=0.164;DB;DP=71;FS=2.407;MQ=39.50;MQRankSum=-0.416;QD=22.93;ReadPosRankSum=1.154;SOR=0.875	GT:AD:DP:GQ:PL	0/1:44,27:71:99:949,0,1564
1	22313469	rs3806296	G	C	5190.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=-0.482;DB;DP=55;FS=0.000;MQ=39.40;MQRankSum=1.943;QD=25.69;ReadPosRankSum=-0.907;SOR=0.736	GT:AD:DP:GQ:PL	0/1:20,35:55:99:1318,0,697
1	22313521	rs71638814	G	T	3985.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;ClippingRankSum=-0.239;DB;DP=56;FS=4.823;MQ=41.64;MQRankSum=0.315;QD=22.26;ReadPosRankSum=-0.049;SOR=1.166	GT:AD:DP:GQ:PL	0/1:22,34:56:99:1190,0,734
1	22315662	rs12082371	C	T	2055.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=-0.565;DB;DP=35;FS=2.895;MQ=42.91;MQRankSum=-0.821;QD=14.38;ReadPosRankSum=1.685;SOR=0.331	GT:AD:DP:GQ:PL	0/1:26,9:35:99:296,0,1029
1	22315666	rs55665598	G	A	2058.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.292;ClippingRankSum=-0.335;DB;DP=32;FS=2.846;MQ=42.16;MQRankSum=-1.618;QD=14.92;ReadPosRankSum=2.053;SOR=0.348	GT:AD:DP:GQ:PL	0/1:24,8:32:99:299,0,993
1	22315710	rs12071902	G	A	811.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;ClippingRankSum=-1.552;DB;DP=24;FS=1.937;MQ=31.30;MQRankSum=-1.752;QD=9.02;ReadPosRankSum=-0.653;SOR=0.957	GT:AD:DP:GQ:PL	0/1:16,8:24:99:233,0,507
1	22315738	rs4655006	C	T	3184.90	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.000;MQ=36.29;QD=32.82;SOR=2.557	GT:AD:DP:GQ:PL	1/1:0,18:18:53:648,53,0
1	22315951	rs201363493	C	T	559.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;ClippingRankSum=-0.376;DB;DP=10;FS=5.530;MQ=33.20;MQRankSum=-2.059;QD=13.33;ReadPosRankSum=0.919;SOR=2.685	GT:AD:DP:GQ:PL	0/1:7,3:10:99:134,0,326
1	22315957	rs201638595	T	C	520.92	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.325;DB;DP=11;FS=5.905;MQ=32.66;MQRankSum=-1.222;QD=14.08;ReadPosRankSum=0.387;SOR=2.419	GT:AD:DP:GQ:PL	0/1:7,4:11:99:134,0,326
1	22315997	rs28692891	C	T	64.04	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=-0.495;DB;DP=3;FS=0.000;MQ=32.25;MQRankSum=-1.061;QD=4.57;ReadPosRankSum=1.061;SOR=0.188	GT:AD:DP:GQ:PL	0/1:2,1:3:32:32,0,68
1	22324705	rs7534936	T	C	10036.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=1.517;DB;DP=99;FS=2.776;MQ=57.83;MQRankSum=0.559;QD=29.87;ReadPosRankSum=0.439;SOR=0.897	GT:AD:DP:GQ:PL	0/1:38,61:99:99:2291,0,1344
1	22328279	rs12751986	C	T	13191.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.805;ClippingRankSum=0.293;DB;DP=140;FS=0.000;MQ=59.74;MQRankSum=-3.002;QD=27.89;ReadPosRankSum=3.503;SOR=0.642	GT:AD:DP:GQ:PL	0/1:63,77:140:99:2857,0,2297
1	22329041	rs71016961	GC	G	7298.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;ClippingRankSum=-0.784;DB;DP=193;FS=2.802;MQ=38.51;MQRankSum=0.671;QD=10.53;ReadPosRankSum=1.007;SOR=1.118	GT:AD:DP:GQ:PL	0/1:127,66:193:99:1758,0,13207
1	22329062	rs143337942	C	G	10939.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.039;ClippingRankSum=0.306;DB;DP=212;FS=0.000;MQ=40.05;MQRankSum=0.984;QD=14.95;ReadPosRankSum=-0.082;SOR=0.566	GT:AD:DP:GQ:PL	0/1:139,73:212:99:2713,0,10300
1	22329063	rs150897434	C	T	10907.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.996;ClippingRankSum=-0.122;DB;DP=213;FS=0.000;MQ=40.14;MQRankSum=1.137;QD=14.82;ReadPosRankSum=0.159;SOR=0.666	GT:AD:DP:GQ:PL	0/1:139,74:213:99:2681,0,10303
1	22329220	rs55638883	G	A	12760.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;ClippingRankSum=0.790;DB;DP=246;FS=10.726;MQ=41.49;MQRankSum=0.915;QD=14.47;ReadPosRankSum=3.254;SOR=0.268	GT:AD:DP:GQ:PL	0/1:166,80:246:99:2488,0,5724
1	22329346	rs200212152	G	A	3115.92	SNP_MQRankSumLow;SNP_StrandBias	AC=1;AF=0.500;AN=2;BaseQRankSum=-14.270;ClippingRankSum=-2.466;DB;DP=172;FS=64.956;MQ=50.97;MQRankSum=-13.185;QD=5.01;ReadPosRankSum=-1.222;SOR=6.375	GT:AD:DP:GQ:PL	0/1:134,38:172:99:753,0,5099
1	22329407	rs12756442	G	C	7758.16	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=-0.298;DB;DP=132;FS=0.000;MQ=47.52;MQRankSum=-15.812;QD=21.73;ReadPosRankSum=-2.095;SOR=0.683	GT:AD:DP:GQ:PL	0/1:72,60:132:99:1938,0,2843
1	22329414	rs10917107	G	A	5161.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=-0.766;DB;DP=128;FS=3.557;MQ=48.29;MQRankSum=15.342;QD=22.44;ReadPosRankSum=2.201;SOR=0.879	GT:AD:DP:GQ:PL	0/1:55,73:128:99:2714,0,2134
1	22329645	rs4543768	T	C	2487.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.774;DB;DP=38;FS=19.456;MQ=39.73;MQRankSum=-8.978;QD=18.84;ReadPosRankSum=-0.552;SOR=0.035	GT:AD:DP:GQ:PL	0/1:30,8:38:99:138,0,1197
1	22333538	rs11583776	A	G	1885.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.166;ClippingRankSum=-0.482;DB;DP=207;FS=2.305;MQ=48.18;MQRankSum=-10.089;QD=11.02;ReadPosRankSum=4.246;SOR=0.407	GT:AD:DP:GQ:PL	0/0:207,0:207:99:0,621,8641
1	22333595	rs3820290	G	A	5322.16	SNP_MQRankSumLow	AC=1;AF=0.500;AN=2;BaseQRankSum=4.690;ClippingRankSum=0.904;DB;DP=197;FS=3.488;MQ=51.91;MQRankSum=-17.146;QD=15.34;ReadPosRankSum=1.378;SOR=0.464	GT:AD:DP:GQ:PL	0/1:98,99:197:99:3462,0,3539
1	22333688	rs3820289	T	C	11486.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.179;DB;DP=135;FS=1.928;MQ=46.79;MQRankSum=-12.066;QD=26.96;ReadPosRankSum=1.764;SOR=0.861	GT:AD:DP:GQ:PL	0/1:68,67:135:99:2443,0,2530
1	22336120	rs4344303	T	C	7307.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.600;DB;DP=83;FS=3.781;MQ=58.53;MQRankSum=0.296;QD=25.64;ReadPosRankSum=1.966;SOR=1.542	GT:AD:DP:GQ:PL	0/1:44,39:83:99:1455,0,1655
1	22336277	rs3820285	C	G	17774.90	SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=127;FS=0.000;MQ=59.12;QD=27.13;SOR=1.034	GT:AD:DP:GQ:PL	1/1:0,127:127:99:5311,381,0
1	22336305	rs9187	C	T	10999.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.957;ClippingRankSum=-1.899;DB;DP=122;FS=7.786;MQ=57.41;MQRankSum=1.329;QD=26.70;ReadPosRankSum=0.454;SOR=1.232	GT:AD:DP:GQ:PL	0/1:60,62:122:99:2500,0,2364
1	22336308	rs12908	G	A	10879.16	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.756;ClippingRankSum=0.512;DB;DP=123;FS=9.140;MQ=56.91;MQRankSum=2.505;QD=26.66;ReadPosRankSum=0.753;SOR=1.316	GT:AD:DP:GQ:PL	0/1:60,63:123:99:2500,0,2364
1	22336371	rs3806297	C	A	4037.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;ClippingRankSum=-0.805;DB;DP=86;FS=8.587;MQ=44.49;MQRankSum=0.408;QD=19.99;ReadPosRankSum=1.658;SOR=1.197	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1504,0,1481
1	22336810	rs66835125	C	CA	1362.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.651;ClippingRankSum=0.751;DB;DP=47;FS=0.000;MQ=60.09;MQRankSum=0.601;QD=10.32;ReadPosRankSum=1.145;SOR=0.503	GT:AD:DP:GQ:PL	0/1:22,25:47:99:578,0,471
1	22339139	rs201779580	C	T	479.23	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MQ=35.86;QD=31.76;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
1	22339145	rs199559883	T	C	398.45	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MQ=36.19;QD=29.43;SOR=2.093	GT:AD:DP:GQ:PL	1/1:0,3:3:12:167,12,0
1	22339185	rs6680633	C	T	283.18	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MQ=35.68;QD=24.33;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
1	22379088	rs2473325	G	A	183.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=32.67;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	22405379	.	CT	C	496.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;ClippingRankSum=-0.156;DP=5;FS=0.000;MQ=60.16;MQRankSum=0.094;QD=7.41;ReadPosRankSum=1.342;SOR=1.473	GT:AD:DP:GQ:PL	1/1:0,5:5:14:76,14,0
1	22408106	rs2501282	G	A	7436.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.00;QD=28.83;SOR=0.825	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1880,135,0
1	22447148	rs12756110	G	C	4883.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.103;DB;DP=61;FS=0.000;MQ=60.00;MQRankSum=-0.659;QD=26.54;ReadPosRankSum=1.276;SOR=0.685	GT:AD:DP:GQ:PL	0/1:29,32:61:99:1196,0,1074
1	22447645	rs59293292	C	CTG	5421.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=-0.433;DB;DP=46;FS=0.000;MQ=60.39;MQRankSum=0.613;QD=28.09;ReadPosRankSum=0.853;SOR=1.712	GT:AD:DP:GQ:PL	0/1:22,24:46:99:961,0,828
1	22816233	rs10799756	C	T	147.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=1.741;DB;DP=14;FS=0.000;MQ=60.00;MQRankSum=0.634;QD=10.51;ReadPosRankSum=2.308;SOR=0.019	GT:AD:DP:GQ:PL	0/1:8,6:14:99:178,0,303
1	22816262	rs1267005	T	C	1649.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.214;DB;DP=18;FS=4.281;MQ=60.00;MQRankSum=-0.979;QD=24.61;ReadPosRankSum=0.188;SOR=2.552	GT:AD:DP:GQ:PL	1/1:0,18:18:54:781,54,0
1	22817717	rs12566074	A	G	845.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.140;DB;DP=14;FS=2.462;MQ=60.00;MQRankSum=0.165;QD=20.14;ReadPosRankSum=1.029;SOR=1.702	GT:AD:DP:GQ:PL	0/1:5,9:14:99:348,0,181
1	22818139	rs75197070	AT	A	49.12	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.700;ClippingRankSum=-0.283;DB;DP=30;FS=0.000;MQ=60.07;MQRankSum=0.015;QD=1.09;ReadPosRankSum=0.631;SOR=0.115	GT:AD:DP:GQ:PL	0/0:28,2:30:37:0,37,599
1	22827931	rs4655071	C	T	684.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244;ClippingRankSum=0.264;DB;DP=46;FS=0.964;MQ=60.00;MQRankSum=-1.644;QD=14.56;ReadPosRankSum=-0.199;SOR=0.484	GT:AD:DP:GQ:PL	0/1:24,22:46:99:715,0,899
1	22832743	rs209732	A	T	2403.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.492;DB;DP=27;FS=2.602;MQ=60.00;MQRankSum=0.022;QD=26.12;ReadPosRankSum=1.015;SOR=0.237	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1120,81,0
1	22832881	rs72651315	A	G	268.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.041;DB;DP=16;FS=0.000;MQ=60.00;MQRankSum=-0.122;QD=16.76;ReadPosRankSum=0.311;SOR=0.375	GT:AD:DP:GQ:PL	0/1:8,8:16:99:299,0,299
1	22835677	rs209729	A	G	4587.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.808;ClippingRankSum=-1.328;DB;DP=48;FS=4.411;MQ=60.00;MQRankSum=-1.491;QD=23.65;ReadPosRankSum=1.890;SOR=1.104	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2077,144,0
1	22837586	.	CT	C	505.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.038;DP=17;FS=1.601;MQ=60.23;MQRankSum=-0.601;QD=5.38;ReadPosRankSum=1.559;SOR=0.343	GT:AD:DP:GQ:PL	0/1:9,8:17:99:107,0,130
1	22837849	rs209727	C	T	402.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.381;DB;DP=30;FS=0.000;MQ=60.00;MQRankSum=0.512;QD=13.40;ReadPosRankSum=1.054;SOR=0.368	GT:AD:DP:GQ:PL	0/1:17,13:30:99:433,0,541
1	22837944	rs2073168	T	C	1976.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=-0.398;DB;DP=37;FS=0.000;MQ=60.00;MQRankSum=-0.468;QD=18.65;ReadPosRankSum=-1.088;SOR=0.691	GT:AD:DP:GQ:PL	0/1:17,20:37:99:714,0,633
1	22846452	rs7551801	C	G	638.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=1.054;DB;DP=38;FS=5.269;MQ=59.90;MQRankSum=0.205;QD=16.79;ReadPosRankSum=2.123;SOR=0.036	GT:AD:DP:GQ:PL	0/1:19,19:38:99:669,0,704
1	22846709	rs209720	G	A	6702.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.000;MQ=60.00;QD=25.28;SOR=2.818	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2402,168,0
1	22848972	rs61769198	A	C	1078.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.792;ClippingRankSum=-0.924;DB;DP=59;FS=1.397;MQ=60.00;MQRankSum=0.390;QD=18.27;ReadPosRankSum=1.515;SOR=0.368	GT:AD:DP:GQ:PL	0/1:30,29:59:99:1109,0,1018
1	22849003	rs998978	A	C	2898.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=-0.260;DB;DP=41;FS=3.773;MQ=60.00;MQRankSum=0.764;QD=16.29;ReadPosRankSum=1.315;SOR=0.232	GT:AD:DP:GQ:PL	0/1:27,14:41:99:479,0,1065
1	22852715	rs881646	G	C	5422.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.695;DB;DP=98;FS=1.851;MQ=60.00;MQRankSum=-0.112;QD=17.11;ReadPosRankSum=0.744;SOR=0.794	GT:AD:DP:GQ:PL	0/1:52,46:98:99:1701,0,1967
1	22912819	rs639519	T	C	2895.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;FS=0.000;MQ=60.00;QD=30.42;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,21:21:63:897,63,0
1	22912865	rs537426	A	G	2312.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=-0.716;DB;DP=32;FS=14.071;MQ=60.00;MQRankSum=-2.017;QD=22.02;ReadPosRankSum=0.897;SOR=2.575	GT:AD:DP:GQ:PL	0/1:18,14:32:99:476,0,692
1	22913153	rs638058	T	C	7918.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;ClippingRankSum=-0.060;DB;DP=86;FS=1.644;MQ=60.00;MQRankSum=0.713;QD=28.48;ReadPosRankSum=0.788;SOR=0.815	GT:AD:DP:GQ:PL	0/1:38,48:86:99:1808,0,1370
1	22913274	rs66713995	G	GGGGT	3336.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.822;ClippingRankSum=-1.021;DB;DP=52;FS=0.000;MQ=60.30;MQRankSum=2.348;QD=23.33;ReadPosRankSum=-0.107;SOR=0.760	GT:AD:DP:GQ:PL	0/1:26,26:52:99:1005,0,1346
1	22915753	rs606002	T	C	9096.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=-0.220;DB;DP=107;FS=0.000;MQ=60.00;MQRankSum=-0.605;QD=26.91;ReadPosRankSum=-0.586;SOR=0.708	GT:AD:DP:GQ:PL	0/1:55,52:107:99:1800,0,2014
1	22915967	rs11584845	C	G	4425.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.537;ClippingRankSum=-0.524;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=-0.342;QD=28.73;ReadPosRankSum=0.995;SOR=0.810	GT:AD:DP:GQ:PL	0/1:22,20:42:99:732,0,813
1	22915978	rs521570	A	T	4112.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=-0.676;DB;DP=41;FS=1.074;MQ=60.00;MQRankSum=-1.304;QD=29.16;ReadPosRankSum=-0.992;SOR=0.576	GT:AD:DP:GQ:PL	0/1:21,20:41:99:742,0,799
1	22919904	rs209696	C	T	3257.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.560;ClippingRankSum=0.758;DB;DP=160;FS=3.629;MQ=60.00;MQRankSum=-1.521;QD=20.11;ReadPosRankSum=1.958;SOR=0.396	GT:AD:DP:GQ:PL	0/1:72,88:160:99:3288,0,2617
1	22920094	rs56157621	C	G	10598.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=-0.359;DB;DP=118;FS=3.430;MQ=60.00;MQRankSum=-0.713;QD=27.82;ReadPosRankSum=-2.507;SOR=0.925	GT:AD:DP:GQ:PL	0/1:57,61:118:99:2241,0,2134
1	22922546	rs209692	G	A	707.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=-0.209;DB;DP=61;FS=0.000;MQ=60.00;MQRankSum=0.426;QD=11.59;ReadPosRankSum=2.155;SOR=0.537	GT:AD:DP:GQ:PL	0/1:39,22:61:99:738,0,1489
1	22922560	rs209691	G	A	8103.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;ClippingRankSum=-0.868;DB;DP=72;FS=0.000;MQ=60.00;MQRankSum=-0.939;QD=33.62;ReadPosRankSum=-2.171;SOR=0.934	GT:AD:DP:GQ:PL	1/1:0,72:72:99:3098,216,0
1	22923732	rs68055833	CCCAGGCCCAGG	C	4827.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=-1.179;DB;DP=49;FS=1.942;MQ=60.20;MQRankSum=0.094;QD=29.26;ReadPosRankSum=1.934;SOR=1.384	GT:AD:DP:GQ:PL	0/1:21,28:49:99:1106,0,872
1	22923785	rs11582356	G	A	5063.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=-0.694;DB;DP=56;FS=3.304;MQ=60.17;MQRankSum=-1.132;QD=26.23;ReadPosRankSum=-1.695;SOR=1.478	GT:AD:DP:GQ:PL	0/1:31,25:56:99:849,0,1133
1	22924124	rs61767315	G	A	10168.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=-0.746;DB;DP=104;FS=4.038;MQ=60.00;MQRankSum=0.554;QD=29.30;ReadPosRankSum=1.813;SOR=0.494	GT:AD:DP:GQ:PL	0/1:43,61:104:99:2280,0,1473
1	22924364	rs72651347	G	A	7948.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.054;ClippingRankSum=-0.491;DB;DP=79;FS=4.057;MQ=60.00;MQRankSum=-0.101;QD=29.22;ReadPosRankSum=-0.262;SOR=0.984	GT:AD:DP:GQ:PL	0/1:42,37:79:99:1364,0,1516
1	22924418	rs12030727	T	C	5690.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.936;DB;DP=71;FS=7.575;MQ=60.00;MQRankSum=-0.177;QD=27.10;ReadPosRankSum=0.904;SOR=1.192	GT:AD:DP:GQ:PL	0/1:37,34:71:99:1209,0,1375
1	22924464	rs12404556	T	C	1489.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=-0.301;DB;DP=80;FS=0.626;MQ=60.00;MQRankSum=-0.386;QD=18.61;ReadPosRankSum=1.858;SOR=0.688	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1520,0,1317
1	22924783	rs11586741	C	T	564.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.072;DB;DP=64;FS=3.690;MQ=60.00;MQRankSum=-0.118;QD=11.28;ReadPosRankSum=1.008;SOR=0.083	GT:AD:DP:GQ:PL	0/0:64,0:64:99:0,192,2729
1	22925292	rs664340	C	G	12748.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;FS=0.000;MQ=60.00;QD=28.97;SOR=2.974	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3919,284,0
1	22925613	rs663002	C	A	5100.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.798;DB;DP=60;FS=0.000;MQ=60.00;MQRankSum=-0.725;QD=26.70;ReadPosRankSum=3.185;SOR=1.063	GT:AD:DP:GQ:PL	0/1:28,32:60:99:1179,0,1039
1	22927241	rs72651352	G	A	4802.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;ClippingRankSum=-0.314;DB;DP=103;FS=26.320;MQ=60.00;MQRankSum=1.491;QD=19.84;ReadPosRankSum=1.477;SOR=0.185	GT:AD:DP:GQ:PL	0/1:42,61:103:99:2328,0,1497
1	22927314	rs209702	A	G	14514.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;ClippingRankSum=-1.505;DB;DP=112;FS=2.741;MQ=60.00;MQRankSum=-1.874;QD=31.61;ReadPosRankSum=0.326;SOR=0.497	GT:AD:DP:GQ:PL	1/1:0,112:112:99:5094,343,0
1	22927326	rs209701	T	G	13676.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.475;ClippingRankSum=1.841;DB;DP=104;FS=1.895;MQ=60.00;MQRankSum=1.354;QD=26.12;ReadPosRankSum=2.310;SOR=0.537	GT:AD:DP:GQ:PL	1/1:0,104:104:99:4675,313,0
1	22927672	rs12126436	G	A	1125.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;ClippingRankSum=0.289;DB;DP=61;FS=0.783;MQ=60.00;MQRankSum=1.142;QD=18.44;ReadPosRankSum=-0.508;SOR=0.817	GT:AD:DP:GQ:PL	0/1:29,32:61:99:1156,0,964
1	22928265	rs209700	A	G	3701.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.275;ClippingRankSum=-1.307;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=-0.394;QD=28.95;ReadPosRankSum=-0.488;SOR=0.616	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1336,96,0
1	22928349	rs209699	A	G	2001.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.068;ClippingRankSum=-1.062;DB;DP=16;FS=0.000;MQ=60.00;MQRankSum=-1.373;QD=32.81;ReadPosRankSum=1.120;SOR=1.852	GT:AD:DP:GQ:PL	1/1:0,16:16:48:617,48,0
1	22965438	rs172378	A	G	3376.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.529;DB;DP=162;FS=5.912;MQ=60.00;MQRankSum=-0.343;QD=20.59;ReadPosRankSum=0.579;SOR=0.333	GT:AD:DP:GQ:PL	0/1:68,94:162:99:3407,0,2446
1	22966227	rs10917274	T	G	112.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=-0.458;DB;DP=11;FS=0.000;MQ=60.00;MQRankSum=-0.275;QD=10.20;ReadPosRankSum=0.519;SOR=0.307	GT:AD:DP:GQ:PL	0/1:7,4:11:99:143,0,274
1	22970642	rs80083522	C	T	954.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=-0.278;DB;DP=61;FS=1.786;MQ=60.00;MQRankSum=-1.031;QD=15.14;ReadPosRankSum=2.771;SOR=0.463	GT:AD:DP:GQ:PL	0/1:34,27:61:99:985,0,1297
1	22970828	rs666656	G	T	4204.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.830;ClippingRankSum=0.677;DB;DP=33;FS=2.100;MQ=60.00;MQRankSum=1.377;QD=30.46;ReadPosRankSum=1.910;SOR=0.443	GT:AD:DP:GQ:PL	1/1:0,33:33:98:1372,98,0
1	22970925	rs666537	T	C	2762.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.704;ClippingRankSum=-0.900;DB;DP=25;FS=4.662;MQ=60.00;MQRankSum=-1.904;QD=34.53;ReadPosRankSum=1.148;SOR=0.163	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1088,75,0
1	22974297	rs9434	C	A	6277.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.064;DB;DP=64;FS=0.000;MQ=59.99;MQRankSum=-0.566;QD=33.57;ReadPosRankSum=0.819;SOR=1.083	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2750,193,0
1	22974379	rs142916975	CCCACCAGATGGACTTCT	C	318.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=1.425;DB;DP=26;FS=0.000;MQ=60.29;MQRankSum=0.252;QD=11.78;ReadPosRankSum=-0.350;SOR=0.119	GT:AD:DP:GQ:PL	0/1:16,10:26:99:358,0,630
1	22974533	rs10601144	CTT	C	74.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=24.84;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
1	22979655	rs291990	T	G	264.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.747;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.747;QD=36.13;ReadPosRankSum=-0.747;SOR=0.595	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
1	22985785	rs112122696	A	AGATG,AGATGGATG	1358.64	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=-0.110;DB;DP=12;FS=0.000;MQ=59.51;MQRankSum=1.244;QD=22.64;ReadPosRankSum=1.465;SOR=0.726	GT:AD:DP:GQ:PL	1/2:0,6,6:12:99:551,257,234,225,0,230
1	22985839	rs140338008	AGATG	A	1698.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.000;MQ=58.56;QD=23.27;SOR=5.943	GT:AD:DP:GQ:PL	1/1:0,11:11:34:481,34,0
1	22987958	rs10580	A	G	10519.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.000;MQ=60.00;QD=32.47;SOR=4.901	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2745,200,0
1	23045943	rs2869513	A	G	4585.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.222;ClippingRankSum=-0.583;DB;DP=71;FS=0.000;MQ=60.00;MQRankSum=-0.314;QD=30.99;ReadPosRankSum=0.764;SOR=0.698	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,214,3079
1	23101688	rs1561624	T	G	5045.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.923;ClippingRankSum=1.313;DB;DP=79;FS=0.536;MQ=60.00;MQRankSum=-1.165;QD=29.00;ReadPosRankSum=1.094;SOR=0.745	GT:AD:DP:GQ:PL	0/0:78,1:79:99:0,227,3278
1	23107811	.	TAA	T,TA	530.12	PASS	AC=1,0;AF=0.500,0.00;AN=2;BaseQRankSum=-0.076;ClippingRankSum=-1.172;DP=9;FS=3.503;MQ=59.92;MQRankSum=1.506;QD=9.30;ReadPosRankSum=-0.259;SOR=0.238	GT:AD:DP:GQ:PL	0/1:5,2,2:9:19:52,0,136,19,78,103
1	23107832	rs3738296	A	G	1298.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.642;ClippingRankSum=-1.115;DB;DP=22;FS=1.846;MQ=60.01;MQRankSum=0.346;QD=22.02;ReadPosRankSum=-0.353;SOR=0.912	GT:AD:DP:GQ:PL	1/1:0,22:22:65:770,65,0
1	23108089	rs2817904	A	G	1882.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.452;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=-0.364;QD=25.79;ReadPosRankSum=-0.377;SOR=0.920	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,1213
1	23110948	rs72653677	G	A	2454.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=-1.374;DB;DP=134;FS=5.552;MQ=60.00;MQRankSum=0.867;QD=18.18;ReadPosRankSum=2.210;SOR=0.304	GT:AD:DP:GQ:PL	0/1:67,67:134:99:2485,0,2463
1	23208720	rs309485	C	G	807.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.960;DB;DP=15;FS=0.000;MQ=60.00;MQRankSum=0.935;QD=19.24;ReadPosRankSum=2.426;SOR=0.914	GT:AD:DP:GQ:PL	0/1:6,9:15:99:315,0,212
1	23208925	rs2229872	G	A	1642.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.051;DB;DP=34;FS=4.034;MQ=60.00;MQRankSum=0.851;QD=16.11;ReadPosRankSum=-0.120;SOR=0.369	GT:AD:DP:GQ:PL	0/1:15,19:34:99:730,0,560
1	23216712	rs309474	T	C	1579.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.547;DB;DP=31;FS=10.597;MQ=60.00;MQRankSum=-1.183;QD=17.95;ReadPosRankSum=0.122;SOR=1.591	GT:AD:DP:GQ:PL	0/1:14,17:31:99:600,0,474
1	23217443	rs72655556	G	A	513.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.605;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=1.271;QD=13.50;ReadPosRankSum=-1.115;SOR=0.712	GT:AD:DP:GQ:PL	0/1:21,17:38:99:544,0,755
1	23219187	rs116119	C	T	3215.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=-1.621;DB;DP=67;FS=0.000;MQ=60.00;MQRankSum=0.128;QD=21.29;ReadPosRankSum=3.747;SOR=1.121	GT:AD:DP:GQ:PL	0/1:28,39:67:99:1456,0,981
1	23219493	rs309472	T	C	22009.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=158;FS=0.000;MQ=60.00;QD=30.57;SOR=1.148	GT:AD:DP:GQ:PL	1/1:0,158:158:99:6726,474,0
1	23223116	rs309466	C	T	3874.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.868;ClippingRankSum=1.104;DB;DP=77;FS=2.670;MQ=60.00;MQRankSum=-1.527;QD=21.06;ReadPosRankSum=0.672;SOR=1.000	GT:AD:DP:GQ:PL	0/1:34,43:77:99:1646,0,1241
1	23232400	rs309502	C	T	1746.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.870;DB;DP=47;FS=5.310;MQ=60.00;MQRankSum=0.997;QD=17.82;ReadPosRankSum=0.467;SOR=0.127	GT:AD:DP:GQ:PL	0/1:25,22:47:99:822,0,953
1	23236826	rs309497	C	T	4348.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;ClippingRankSum=0.179;DB;DP=70;FS=1.625;MQ=60.00;MQRankSum=0.272;QD=27.88;ReadPosRankSum=0.577;SOR=0.510	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2960,209,0
1	23280424	rs12048993	G	T	890.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.624;DB;DP=55;FS=0.000;MQ=60.00;MQRankSum=0.701;QD=15.90;ReadPosRankSum=1.099;SOR=0.649	GT:AD:DP:GQ:PL	0/1:29,26:55:99:921,0,1055
1	23281917	rs72655581	G	T	1405.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.690;DB;DP=27;FS=9.173;MQ=60.00;MQRankSum=-0.298;QD=17.35;ReadPosRankSum=0.386;SOR=1.835	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1122
1	23285678	rs309510	A	G	2502.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.000;MQ=60.00;QD=34.23;SOR=8.287	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1063,75,0
1	23289568	rs10799777	T	C	3409.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.429;ClippingRankSum=0.147;DB;DP=37;FS=5.806;MQ=60.00;MQRankSum=2.249;QD=26.02;ReadPosRankSum=0.976;SOR=1.609	GT:AD:DP:GQ:PL	0/1:23,14:37:99:509,0,845
1	23291582	rs4655138	G	A	3185.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=-0.518;DB;DP=38;FS=1.159;MQ=60.00;MQRankSum=-0.176;QD=23.77;ReadPosRankSum=0.107;SOR=0.451	GT:AD:DP:GQ:PL	0/1:29,9:38:99:273,0,1104
1	23337885	.	CT	C	84.11	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=-1.061;DP=17;FS=0.000;MQ=59.33;MQRankSum=-0.321;QD=1.05;ReadPosRankSum=-0.962;SOR=0.404	GT:AD:DP:GQ:PL	0/1:12,5:17:58:58,0,228
1	23342193	rs10917344	C	G	1906.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=-2.280;DB;DP=14;FS=0.000;MQ=60.00;MQRankSum=-1.009;QD=26.47;ReadPosRankSum=0.996;SOR=1.778	GT:AD:DP:GQ:PL	0/1:7,7:14:99:260,0,255
1	23342362	rs681648	A	G	6241.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.000;MQ=60.00;QD=31.72;SOR=0.762	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1447,107,0
1	23356864	rs10799788	G	A	824.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.902;DB;DP=30;FS=0.000;MQ=60.00;MQRankSum=-0.523;QD=16.16;ReadPosRankSum=0.086;SOR=0.187	GT:AD:DP:GQ:PL	0/1:16,14:30:99:525,0,602
1	23380198	rs579785	A	G	3991.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.000;MQ=60.00;QD=31.21;SOR=5.784	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1232,84,0
1	23384293	rs35285714	C	CTT	299.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.495;DB;DP=4;FS=2.963;MQ=60.00;MQRankSum=0.495;QD=5.25;ReadPosRankSum=-0.919;SOR=1.981	GT:AD:DP:GQ:PL	0/1:1,3:4:20:51,0,20
1	23384313	rs201720680	G	T	37.36	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.289;DB;DP=4;FS=17.433;MQ=60.00;MQRankSum=-0.372;QD=2.49;ReadPosRankSum=-1.528;SOR=4.403	GT:AD:DP:GQ:PL	0/0:3,1:4:2:0,2,103
1	23385826	rs79588010	CTT	C	3578.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.183;DB;DP=88;FS=0.000;MQ=60.04;MQRankSum=0.613;QD=17.89;ReadPosRankSum=1.277;SOR=0.704	GT:AD:DP:GQ:PL	0/1:41,47:88:99:1850,0,1758
1	23399932	rs967605	C	T	4964.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.000;MQ=60.00;QD=26.28;SOR=2.933	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1406,102,0
1	23405794	rs2072945	A	C	9483.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.000;MQ=60.00;QD=25.48;SOR=0.898	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2808,196,0
1	23405865	rs72657829	A	C	3368.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.263;ClippingRankSum=-0.378;DB;DP=73;FS=0.519;MQ=60.00;MQRankSum=-0.914;QD=17.36;ReadPosRankSum=-1.216;SOR=0.753	GT:AD:DP:GQ:PL	0/0:72,1:73:99:0,209,3100
1	23405872	rs2072944	T	C	3047.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=1.147;DB;DP=71;FS=0.542;MQ=60.00;MQRankSum=0.320;QD=18.69;ReadPosRankSum=-1.038;SOR=0.628	GT:AD:DP:GQ:PL	0/1:37,34:71:99:1276,0,1377
1	23409538	rs2235546	G	A	5138.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=-1.757;DB;DP=62;FS=0.000;MQ=60.00;MQRankSum=0.274;QD=24.01;ReadPosRankSum=0.867;SOR=1.318	GT:AD:DP:GQ:PL	0/1:35,27:62:99:948,0,1294
1	23410138	rs12137204	T	G	46.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=-0.727;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.727;QD=6.60;ReadPosRankSum=0.727;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,1:2:20:21,0,20
1	23410140	rs12139776	G	T	135.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=22.51;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
1	23418153	rs10799790	C	T	17697.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;FS=0.000;MQ=60.00;QD=28.63;SOR=1.254	GT:AD:DP:GQ:PL	1/1:0,141:141:99:5913,422,0
1	23419261	rs477717	G	A	23555.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;FS=0.000;MQ=60.00;QD=26.32;SOR=0.900	GT:AD:DP:GQ:PL	1/1:0,147:147:99:6024,440,0
1	23419374	rs3765407	G	T	19638.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;FS=0.000;MQ=59.97;QD=27.68;SOR=0.830	GT:AD:DP:GQ:PL	1/1:0,137:137:99:5747,410,0
1	23419383	rs477830	C	T	21927.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;FS=0.000;MQ=60.00;QD=30.73;SOR=0.751	GT:AD:DP:GQ:PL	1/1:0,143:143:99:6359,430,0
1	23419855	rs1983965	T	C	22053.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;FS=0.000;MQ=60.00;QD=29.67;SOR=0.912	GT:AD:DP:GQ:PL	1/1:0,131:131:99:5622,394,0
1	23435669	rs2274687	T	C	61.87	PASS	AC=0;AF=0.00;AN=0;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=-0.736;QD=30.94;ReadPosRankSum=0.736;SOR=1.179	GT	./.
1	23519477	rs623988	C	T	1472.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.943;ClippingRankSum=0.140;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=-0.750;QD=14.43;ReadPosRankSum=-0.140;SOR=0.741	GT:AD:DP:GQ:PL	0/1:21,18:39:99:547,0,778
1	23519508	.	T	TA	921.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.157;DP=47;FS=2.640;MQ=60.12;MQRankSum=1.183;QD=7.25;ReadPosRankSum=-1.563;SOR=1.061	GT:AD:DP:GQ:PL	0/1:25,22:47:99:425,0,522
1	23664511	rs11586100	T	G	1708.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;ClippingRankSum=-0.199;DB;DP=48;FS=0.000;MQ=60.00;MQRankSum=1.201;QD=18.57;ReadPosRankSum=0.773;SOR=0.332	GT:AD:DP:GQ:PL	0/1:25,23:48:99:874,0,954
1	23685785	rs604742	T	C	180.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=34.23;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,1:1:3:39,3,0
1	23688933	rs2849028	A	G	4483.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=-0.147;DB;DP=122;FS=0.579;MQ=60.00;MQRankSum=-0.876;QD=17.72;ReadPosRankSum=0.259;SOR=0.753	GT:AD:DP:GQ:PL	0/1:66,56:122:99:2055,0,2433
1	23689786	.	AT	A	1233.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.827;DP=28;FS=10.116;MQ=60.39;MQRankSum=0.870;QD=8.87;ReadPosRankSum=-0.121;SOR=3.877	GT:AD:DP:GQ:PL	0/1:13,15:28:99:294,0,208
1	23693385	rs618237	T	C	7074.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.156;DB;DP=78;FS=2.972;MQ=60.00;MQRankSum=0.294;QD=28.18;ReadPosRankSum=1.923;SOR=0.454	GT:AD:DP:GQ:PL	0/1:41,37:78:99:1345,0,1533
1	23693422	rs2849025	T	C	3164.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.103;ClippingRankSum=0.691;DB;DP=81;FS=1.928;MQ=60.00;MQRankSum=1.590;QD=17.01;ReadPosRankSum=1.997;SOR=0.843	GT:AD:DP:GQ:PL	0/1:35,46:81:99:1775,0,1290
1	23694639	rs683204	G	A	2280.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=-1.008;DB;DP=26;FS=4.724;MQ=60.00;MQRankSum=0.099;QD=24.78;ReadPosRankSum=0.289;SOR=2.833	GT:AD:DP:GQ:PL	0/1:12,14:26:99:498,0,453
1	23696152	rs665977	G	A	9857.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;ClippingRankSum=1.491;DB;DP=67;FS=0.000;MQ=60.00;MQRankSum=-0.361;QD=26.76;ReadPosRankSum=1.054;SOR=3.470	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2890,201,0
1	23697617	rs638722	T	C	5908.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;ClippingRankSum=0.396;DB;DP=77;FS=1.222;MQ=60.00;MQRankSum=-0.033;QD=27.61;ReadPosRankSum=-1.272;SOR=0.831	GT:AD:DP:GQ:PL	0/1:30,47:77:99:1699,0,1006
1	23707401	rs651542	A	T	148.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=28.73;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:44,3,0
1	23707516	rs651036	C	G	195.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=30.53;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
1	23710805	rs605468	A	G	7701.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;ClippingRankSum=0.780;DB;DP=57;FS=0.000;MQ=60.00;MQRankSum=-0.457;QD=29.37;ReadPosRankSum=1.104;SOR=1.209	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2436,171,0
1	23713952	rs676363	T	G	12623.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;ClippingRankSum=-1.262;DB;DP=86;FS=4.742;MQ=60.00;MQRankSum=-1.509;QD=30.98;ReadPosRankSum=1.063;SOR=1.437	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3743,259,0
1	23720260	rs2486078	T	G	6308.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.000;MQ=60.00;QD=28.78;SOR=10.021	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1686,120,0
1	23724183	rs2275355	C	T	2449.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.661;DB;DP=64;FS=24.704;MQ=59.94;MQRankSum=0.385;QD=17.88;ReadPosRankSum=-0.423;SOR=1.928	GT:AD:DP:GQ:PL	0/1:33,31:64:99:1095,0,1219
1	23735241	rs1198423	G	T	9684.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.000;MQ=60.00;QD=30.63;SOR=1.322	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2848,201,0
1	23743581	rs2156087	C	G	7641.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.000;MQ=60.00;QD=28.82;SOR=4.066	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2460,172,0
1	23745466	.	T	C	21.45	LowQual;SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=-0.829;DP=7;FS=6.107;MQ=60.00;MQRankSum=-0.948;QD=1.53;ReadPosRankSum=-1.303;SOR=2.613	GT:AD:DP:GQ:PL	0/1:6,1:7:20:20,0,223
1	23745468	.	A	C	21.45	LowQual;SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=-0.948;DP=7;FS=6.107;MQ=60.00;MQRankSum=0.118;QD=1.53;ReadPosRankSum=-1.422;SOR=2.613	GT:AD:DP:GQ:PL	0/1:6,1:7:20:20,0,223
1	23751140	rs71514235	G	T	2460.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0.442;DB;DP=84;FS=7.343;MQ=60.00;MQRankSum=-0.204;QD=15.57;ReadPosRankSum=-0.643;SOR=0.293	GT:AD:DP:GQ:PL	0/1:41,43:84:99:1591,0,1516
1	23755513	rs1198430	T	C	5599.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.000;MQ=60.00;QD=28.75;SOR=2.165	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1802,129,0
1	23756695	rs1198433	A	G	3532.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.000;MQ=60.00;QD=31.66;SOR=5.524	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1204,81,0
1	23758134	rs1198434	A	G	9236.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MQ=60.00;QD=33.07;SOR=1.453	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2978,208,0
1	23758497	.	AT	A	67.90	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=1.269;ClippingRankSum=0.208;DP=11;FS=0.000;MQ=63.12;MQRankSum=0.928;QD=0.97;ReadPosRankSum=1.381;SOR=0.039	GT:AD:DP:GQ:PL	0/0:9,2:11:12:0,12,246
1	23758498	.	T	TA	87.88	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.076;DP=9;FS=0.000;MQ=63.23;MQRankSum=0.989;QD=0.88;ReadPosRankSum=0.228;SOR=0.195	GT:AD:DP:GQ:PL	0/1:5,4:9:52:52,0,126
1	23758499	rs72661455	T	A	24.92	LowQual;SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=2.689;DB;DP=11;FS=0.000;MQ=63.15;MQRankSum=-0.801;QD=0.25;ReadPosRankSum=-0.372;SOR=0.132	GT:AD:DP:GQ:PL	0/1:9,2:11:10:10,0,190
1	23762679	rs12401753	A	G	6768.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=60.00;QD=29.40;SOR=3.093	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1751,126,0
1	23765472	rs1767148	A	G	10630.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.000;MQ=60.00;QD=29.64;SOR=1.411	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3064,223,0
1	23767487	rs17184553	C	T	1133.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.093;ClippingRankSum=-0.042;DB;DP=54;FS=0.000;MQ=60.00;MQRankSum=-1.393;QD=15.74;ReadPosRankSum=1.269;SOR=0.814	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,162,2279
1	23768196	rs72661458	G	A	3396.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=-0.414;DB;DP=96;FS=4.247;MQ=60.00;MQRankSum=0.157;QD=16.33;ReadPosRankSum=1.831;SOR=0.479	GT:AD:DP:GQ:PL	0/1:48,48:96:99:1729,0,1773
1	23768508	rs66829308	T	C	1229.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.017;ClippingRankSum=-0.050;DB;DP=65;FS=0.702;MQ=60.00;MQRankSum=-0.448;QD=18.91;ReadPosRankSum=1.421;SOR=0.590	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,196,2783
1	23768790	rs72661462	G	T	2710.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.730;ClippingRankSum=-0.910;DB;DP=67;FS=4.274;MQ=60.00;MQRankSum=0.588;QD=16.94;ReadPosRankSum=0.178;SOR=0.993	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,202,2862
1	23769359	rs946269	T	C	4913.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.000;MQ=60.00;QD=29.52;SOR=5.856	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1367,99,0
1	23782297	rs61778880	C	T	4369.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=1.988;DB;DP=49;FS=0.000;MQ=60.00;MQRankSum=-0.328;QD=29.32;ReadPosRankSum=0.700;SOR=0.658	GT:AD:DP:GQ:PL	0/1:23,26:49:99:1002,0,855
1	23810658	rs71514236	G	A	507.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=-0.601;DB;DP=18;FS=0.000;MQ=60.00;MQRankSum=1.290;QD=15.37;ReadPosRankSum=-0.178;SOR=0.659	GT:AD:DP:GQ:PL	0/1:8,10:18:99:374,0,286
1	23836364	rs2075993	A	G	1354.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.091;DB;DP=62;FS=1.618;MQ=60.00;MQRankSum=-0.052;QD=21.84;ReadPosRankSum=0.539;SOR=0.518	GT:AD:DP:GQ:PL	0/1:24,38:62:99:1385,0,875
1	23847464	rs2075995	C	A	1069.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.828;DB;DP=57;FS=0.000;MQ=60.00;MQRankSum=-0.789;QD=18.76;ReadPosRankSum=0.761;SOR=0.699	GT:AD:DP:GQ:PL	0/1:28,29:57:99:1100,0,1047
1	23847709	rs2075996	C	G	460.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=-0.973;DB;DP=35;FS=4.521;MQ=60.00;MQRankSum=1.301;QD=13.15;ReadPosRankSum=-0.155;SOR=1.664	GT:AD:DP:GQ:PL	0/1:21,14:35:99:491,0,743
1	23884661	rs1050096	G	A	145.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=-0.922;DB;DP=3;FS=3.310;MQ=60.00;MQRankSum=-0.198;QD=20.73;ReadPosRankSum=-0.198;SOR=0.636	GT:AD:DP:GQ:PL	0/1:2,1:3:35:35,0,81
1	23884780	rs2920	T	C	247.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=23.97;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	23885230	rs2067054	C	G	4021.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=-0.556;DB;DP=36;FS=2.304;MQ=60.00;MQRankSum=0.064;QD=31.91;ReadPosRankSum=0.448;SOR=1.641	GT:AD:DP:GQ:PL	0/1:20,16:36:99:525,0,763
1	23885498	rs11574	T	C	16136.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=-0.434;DB;DP=148;FS=2.505;MQ=60.00;MQRankSum=-0.637;QD=34.55;ReadPosRankSum=0.424;SOR=0.471	GT:AD:DP:GQ:PL	0/1:77,71:148:99:2599,0,2756
1	23885599	rs2067053	T	C	17743.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=-0.912;DB;DP=161;FS=0.754;MQ=60.00;MQRankSum=-0.159;QD=35.00;ReadPosRankSum=-0.195;SOR=0.794	GT:AD:DP:GQ:PL	0/1:76,85:161:99:2995,0,2684
1	23954126	rs34020220	T	TAC	3755.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.214;DB;DP=51;FS=5.078;MQ=60.09;MQRankSum=-0.476;QD=15.65;ReadPosRankSum=-2.336;SOR=0.438	GT:AD:DP:GQ:PL	0/1:30,21:51:99:602,0,963
1	23955186	rs139494227	T	TTTATTATTATTATTA,TTTATTATTATTATTATTATTATTA	2987.12	PASS	AC=1,0;AF=0.500,0.00;AN=2;BaseQRankSum=-0.138;ClippingRankSum=-1.228;DB;DP=15;FS=11.638;MQ=58.79;MQRankSum=-3.507;QD=15.40;ReadPosRankSum=-3.782;SOR=2.321	GT:AD:DP:GQ:PL	0/1:8,7,0:15:99:422,0,935,297,970,1375
1	24018277	rs10917413	C	G	12124.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;FS=0.000;MQ=60.00;QD=29.24;SOR=1.009	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3873,276,0
1	24022104	rs10799803	C	T	736.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MQ=60.00;QD=29.42;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,8:8:24:343,24,0
1	24022437	rs2280437	A	G	1176.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=1.890;DB;DP=86;FS=0.000;MQ=60.00;MQRankSum=1.258;QD=13.68;ReadPosRankSum=0.278;SOR=0.716	GT:AD:DP:GQ:PL	0/1:52,34:86:99:1207,0,1900
1	24077451	rs2235541	C	T	6068.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;ClippingRankSum=-0.812;DB;DP=100;FS=1.806;MQ=60.00;MQRankSum=-0.573;QD=27.09;ReadPosRankSum=0.216;SOR=0.816	GT:AD:DP:GQ:PL	1/1:0,100:100:99:4275,300,0
1	24082269	.	CA	C	852.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=-0.428;DP=28;FS=3.392;MQ=60.23;MQRankSum=0.655;QD=6.09;ReadPosRankSum=0.694;SOR=1.546	GT:AD:DP:GQ:PL	0/1:7,21:28:48:347,0,48
1	24082402	rs78642828	G	A	1670.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.460;ClippingRankSum=0.359;DB;DP=86;FS=12.288;MQ=60.00;MQRankSum=1.165;QD=18.77;ReadPosRankSum=2.617;SOR=0.245	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,258,3521
1	24083649	rs2076346	T	C	3257.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.234;ClippingRankSum=-1.633;DB;DP=51;FS=8.230;MQ=59.84;MQRankSum=-0.534;QD=30.17;ReadPosRankSum=-0.688;SOR=0.335	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2212,154,0
1	24106510	rs3831910	A	AT	3994.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.08;QD=30.04;SOR=6.820	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1279,117,0
1	24117835	rs2502985	G	A	150.05	PASS	AC=0;AF=0.00;AN=0;DB;DP=5;FS=0.000;MQ=60.00;QD=30.01;SOR=1.022	GT	./.
1	24119627	rs2232982	C	T	3494.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.238;DB;DP=67;FS=1.338;MQ=59.95;MQRankSum=-1.025;QD=17.38;ReadPosRankSum=2.766;SOR=0.855	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,201,2819
1	24120839	rs115000504	C	A	2404.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.842;DB;DP=115;FS=0.000;MQ=60.00;MQRankSum=0.679;QD=16.35;ReadPosRankSum=3.046;SOR=0.733	GT:AD:DP:GQ:PL	0/0:115,0:115:99:0,345,4890
1	24122986	rs760941	C	T	5846.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.000;MQ=60.00;QD=26.43;SOR=0.772	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2200,174,0
1	24124801	.	CT	C	51.87	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.193;DP=26;FS=1.436;MQ=60.09;MQRankSum=-0.919;QD=0.62;ReadPosRankSum=0.387;SOR=0.929	GT:AD:DP:GQ:PL	0/0:23,3:26:5:0,5,498
1	24128467	rs11714	C	T	225.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=29.39;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	24133612	rs1018396	G	A	10986.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;FS=0.000;MQ=60.00;QD=28.00;SOR=0.740	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3600,255,0
1	24134462	rs719399	C	T	4164.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.000;MQ=60.00;QD=31.73;SOR=5.933	GT:AD:DP:GQ:PL	1/1:0,24:24:71:921,71,0
1	24134721	rs719400	T	C	13679.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.000;MQ=60.00;QD=24.79;SOR=0.838	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3939,273,0
1	24143932	rs2076344	A	G	4906.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.000;MQ=60.00;QD=26.94;SOR=1.630	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1486,105,0
1	24200606	rs1130320	A	G	188.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=33.41;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
1	24200903	rs2229586	G	C	6207.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.000;MQ=60.00;QD=25.38;SOR=5.502	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1841,123,0
1	24200921	rs2229585	T	C	7017.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=60.00;QD=29.74;SOR=5.434	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2051,141,0
1	24200969	rs2229584	T	C	11115.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.000;MQ=60.00;QD=32.48;SOR=3.306	GT:AD:DP:GQ:PL	1/1:0,65:65:99:3052,205,0
1	24200983	rs2229583	C	T	12113.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.000;MQ=60.00;QD=28.05;SOR=2.894	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3399,232,0
1	24201094	rs2229581	G	C	19309.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;FS=0.000;MQ=60.00;QD=26.97;SOR=2.089	GT:AD:DP:GQ:PL	1/1:0,131:131:99:5955,403,0
1	24201109	rs2229580	C	T	19066.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;FS=0.000;MQ=60.00;QD=31.78;SOR=1.956	GT:AD:DP:GQ:PL	1/1:0,127:127:99:5700,388,0
1	24201262	rs2502993	A	G	24728.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=179;FS=0.000;MQ=60.00;QD=30.27;SOR=0.786	GT:AD:DP:GQ:PL	1/1:0,179:179:99:7663,538,0
1	24201357	rs4649124	A	G	21249.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;FS=0.000;MQ=59.97;QD=33.10;SOR=1.347	GT:AD:DP:GQ:PL	1/1:0,148:148:99:6357,445,0
1	24201448	rs3003336	C	T	21040.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;FS=0.000;MQ=60.00;QD=33.41;SOR=1.256	GT:AD:DP:GQ:PL	1/1:0,154:154:99:6683,464,0
1	24201643	rs2501431	G	A	16024.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;FS=0.000;MQ=60.00;QD=32.11;SOR=0.704	GT:AD:DP:GQ:PL	1/1:0,118:118:99:5143,355,0
1	24201919	rs2502992	T	C	18827.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;FS=0.000;MQ=59.97;QD=28.77;SOR=0.925	GT:AD:DP:GQ:PL	1/1:0,125:125:99:5641,379,0
1	24201920	rs2501432	T	C	18827.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;FS=0.000;MQ=59.97;QD=29.98;SOR=0.897	GT:AD:DP:GQ:PL	1/1:0,123:123:99:5641,379,0
1	24202318	rs2502991	A	G	2052.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MQ=60.00;QD=31.52;SOR=6.399	GT:AD:DP:GQ:PL	1/1:0,16:16:48:668,48,0
1	24239588	rs59416608	C	CGGAGGT	191.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=26.45;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	24239719	rs2502955	C	G	201.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MQ=60.00;QD=33.66;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,5:5:15:183,15,0
1	24255844	rs71575785	C	CTATTAT,CTATTATTATTAT,CTATTATTATTATTAT	2956.09	PASS	AC=1,0,0;AF=0.500,0.00,0.00;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.615;DB;DP=18;FS=0.000;MQ=59.00;MQRankSum=-1.058;QD=20.82;ReadPosRankSum=-1.861;SOR=2.730	GT:AD:DP:GQ:PL	0/1:13,5,0,0:18:99:323,0,837,212,875,1494,213,876,1495,1496
1	24286649	rs35666672	G	A	217.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=2.054;DB;DP=5;FS=4.260;MQ=60.00;MQRankSum=-1.001;QD=24.12;ReadPosRankSum=0.573;SOR=3.126	GT:AD:DP:GQ:PL	0/1:3,2:5:74:74,0,110
1	24287227	rs6697024	C	T	2115.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MQ=60.00;QD=25.92;SOR=7.864	GT:AD:DP:GQ:PL	1/1:0,7:7:21:309,21,0
1	24287780	rs148750403	GCTT	G	858.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.192;DB;DP=43;FS=0.000;MQ=60.26;MQRankSum=0.158;QD=19.96;ReadPosRankSum=0.563;SOR=0.651	GT:AD:DP:GQ:PL	0/1:20,23:43:99:898,0,751
1	24287812	rs113073624	GTTA	G	4087.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.983;DB;DP=40;FS=3.043;MQ=60.35;MQRankSum=-0.228;QD=33.50;ReadPosRankSum=-0.129;SOR=0.420	GT:AD:DP:GQ:PL	0/1:24,16:40:99:600,0,939
1	24288404	rs3211051	A	G	101.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.407;DB;DP=11;FS=0.000;MQ=56.97;MQRankSum=-3.121;QD=9.19;ReadPosRankSum=-0.769;SOR=0.008	GT:AD:DP:GQ:PL	0/1:7,4:11:99:132,0,277
1	24288432	rs115735413	C	T	104.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=1.175;DB;DP=10;FS=0.000;MQ=58.15;MQRankSum=-3.301;QD=10.41;ReadPosRankSum=1.473;SOR=0.012	GT:AD:DP:GQ:PL	0/1:6,4:10:99:135,0,228
1	24294249	rs4276860	C	T	6842.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MQ=60.00;QD=30.88;SOR=1.652	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2000,150,0
1	24294362	rs145308205	A	T	1085.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-1.091;DB;DP=47;FS=15.842;MQ=60.00;MQRankSum=0.089;QD=23.09;ReadPosRankSum=-0.447;SOR=2.040	GT:AD:DP:GQ:PL	0/1:17,30:47:99:1116,0,586
1	24294450	.	CA	C,CAA	1154.12	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.731;ClippingRankSum=-1.372;DP=24;FS=0.000;MQ=60.09;MQRankSum=0.106;QD=9.31;ReadPosRankSum=0.767;SOR=0.712	GT:AD:DP:GQ:PL	1/2:2,12,10:24:99:364,197,300,197,0,281
1	24294587	rs145191744	G	A	2958.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=-1.105;DB;DP=20;FS=17.836;MQ=60.00;MQRankSum=1.375;QD=29.50;ReadPosRankSum=0.338;SOR=4.615	GT:AD:DP:GQ:PL	0/1:9,11:20:99:412,0,327
1	24294627	rs35973750	C	T	98.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=1.413;DB;DP=13;FS=0.000;MQ=60.00;MQRankSum=-0.044;QD=7.55;ReadPosRankSum=2.200;SOR=0.069	GT:AD:DP:GQ:PL	0/1:9,4:13:99:129,0,346
1	24298263	rs3795304	T	C	614.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=-0.618;DB;DP=45;FS=2.749;MQ=60.00;MQRankSum=0.743;QD=13.65;ReadPosRankSum=-0.223;SOR=1.144	GT:AD:DP:GQ:PL	0/1:27,18:45:99:645,0,989
1	24298595	rs34369430	T	C	2211.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=-1.438;DB;DP=15;FS=0.000;MQ=60.00;MQRankSum=-0.556;QD=32.10;ReadPosRankSum=-0.346;SOR=2.303	GT:AD:DP:GQ:PL	0/1:8,7:15:99:252,0,304
1	24301685	rs4649146	C	A	75.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.172;DB;DP=18;FS=5.297;MQ=60.00;MQRankSum=-0.281;QD=4.17;ReadPosRankSum=-1.588;SOR=0.033	GT:AD:DP:GQ:PL	0/1:14,4:18:99:106,0,513
1	24301721	rs145233262	T	C	4281.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.000;MQ=60.00;QD=26.15;SOR=7.844	GT:AD:DP:GQ:PL	1/1:0,15:15:45:660,45,0
1	24305397	rs34293328	T	C	4801.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=-0.323;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-0.718;QD=31.48;ReadPosRankSum=1.412;SOR=0.836	GT:AD:DP:GQ:PL	0/1:13,21:34:99:825,0,423
1	24382484	rs6424148	C	A	108.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=27.94;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
1	24383819	rs7540491	T	C	3599.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.153;ClippingRankSum=-0.033;DB;DP=52;FS=0.000;MQ=60.00;MQRankSum=0.630;QD=22.64;ReadPosRankSum=3.043;SOR=0.599	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2234,156,0
1	24387822	rs7553075	T	A	2539.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=1.026;DB;DP=50;FS=0.664;MQ=60.00;MQRankSum=-0.216;QD=18.81;ReadPosRankSum=-0.218;SOR=0.590	GT:AD:DP:GQ:PL	0/1:22,28:50:99:1038,0,742
1	24388371	rs4649168	T	C	8354.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=60.00;QD=33.20;SOR=3.716	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2186,156,0
1	24388417	rs11811060	A	G	2885.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;ClippingRankSum=-1.007;DB;DP=80;FS=7.896;MQ=60.00;MQRankSum=0.495;QD=15.51;ReadPosRankSum=1.677;SOR=1.201	GT:AD:DP:GQ:PL	0/1:39,41:80:99:1506,0,1423
1	24388679	rs3795303	T	C	2749.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=1.090;DB;DP=59;FS=1.461;MQ=59.93;MQRankSum=-0.525;QD=18.09;ReadPosRankSum=-2.144;SOR=0.534	GT:AD:DP:GQ:PL	0/1:30,29:59:99:1104,0,1031
1	24389509	rs67138023	GAA	G	1902.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;ClippingRankSum=0.376;DB;DP=25;FS=0.000;MQ=60.11;MQRankSum=0.155;QD=18.66;ReadPosRankSum=0.122;SOR=1.048	GT:AD:DP:GQ:PL	0/1:12,13:25:99:510,0,491
1	24390731	rs7555384	C	T	748.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.651;ClippingRankSum=-0.368;DB;DP=38;FS=3.927;MQ=60.00;MQRankSum=-0.750;QD=17.40;ReadPosRankSum=0.090;SOR=1.286	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1613
1	24392600	rs6682222	G	A	4542.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.369;DB;DP=92;FS=0.865;MQ=60.00;MQRankSum=-0.378;QD=19.25;ReadPosRankSum=-0.108;SOR=0.755	GT:AD:DP:GQ:PL	0/1:44,48:92:99:1807,0,1504
1	24392671	rs6699525	T	C	3951.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=-0.803;DB;DP=79;FS=2.840;MQ=60.00;MQRankSum=0.154;QD=19.09;ReadPosRankSum=1.498;SOR=0.884	GT:AD:DP:GQ:PL	0/1:34,45:79:99:1647,0,1247
1	24392796	rs10903076	C	T	1561.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.960;DB;DP=33;FS=3.282;MQ=60.00;MQRankSum=-0.940;QD=19.27;ReadPosRankSum=0.204;SOR=0.271	GT:AD:DP:GQ:PL	0/1:11,22:33:99:853,0,363
1	24393563	rs16829071	C	T	3424.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.275;ClippingRankSum=-0.249;DB;DP=91;FS=4.921;MQ=60.00;MQRankSum=-0.501;QD=14.09;ReadPosRankSum=2.098;SOR=0.477	GT:AD:DP:GQ:PL	0/1:53,38:91:99:1315,0,1947
1	24393656	rs12026723	G	A	1485.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.335;ClippingRankSum=1.444;DB;DP=82;FS=7.118;MQ=60.00;MQRankSum=-0.539;QD=20.34;ReadPosRankSum=1.594;SOR=0.316	GT:AD:DP:GQ:PL	0/0:82,0:82:99:0,245,3480
1	24393729	rs11249090	G	A	4314.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=-0.749;DB;DP=83;FS=1.646;MQ=59.82;MQRankSum=1.199;QD=18.44;ReadPosRankSum=1.082;SOR=0.336	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1514,0,1368
1	24394424	rs7542151	G	A	4128.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=2.009;DB;DP=115;FS=1.528;MQ=60.00;MQRankSum=0.285;QD=17.35;ReadPosRankSum=2.024;SOR=0.796	GT:AD:DP:GQ:PL	0/1:60,55:115:99:2042,0,2137
1	24394673	rs12125641	C	T	2206.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905;ClippingRankSum=-0.075;DB;DP=74;FS=1.770;MQ=60.00;MQRankSum=-1.855;QD=12.75;ReadPosRankSum=0.404;SOR=0.552	GT:AD:DP:GQ:PL	0/1:40,34:74:99:965,0,1403
1	24394811	rs12145360	A	G	3335.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=-0.917;DB;DP=95;FS=4.348;MQ=60.00;MQRankSum=2.155;QD=17.10;ReadPosRankSum=3.808;SOR=0.982	GT:AD:DP:GQ:PL	0/1:45,50:95:99:1894,0,1610
1	24395003	rs6660675	T	G	1877.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=-0.318;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=0.849;QD=16.62;ReadPosRankSum=0.505;SOR=0.558	GT:AD:DP:GQ:PL	0/1:21,18:39:99:666,0,793
1	24397473	rs34631595	G	GC	445.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.628;DB;DP=24;FS=0.000;MQ=60.00;MQRankSum=0.449;QD=18.55;ReadPosRankSum=-1.166;SOR=0.223	GT:AD:DP:GQ:PL	0/1:10,14:24:99:485,0,298
1	24400584	rs6660949	G	C	12508.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;FS=0.000;MQ=60.00;QD=30.39;SOR=2.153	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3768,267,0
1	24400633	rs10903083	C	G	13739.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;FS=0.000;MQ=60.00;QD=27.21;SOR=0.860	GT:AD:DP:GQ:PL	1/1:0,98:98:99:4121,294,0
1	24406535	rs35446243	G	A	1699.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=-0.192;DB;DP=94;FS=2.888;MQ=60.00;MQRankSum=0.711;QD=17.89;ReadPosRankSum=1.104;SOR=0.488	GT:AD:DP:GQ:PL	0/1:46,48:94:99:1730,0,1683
1	24406647	rs4649175	G	A	1384.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.821;ClippingRankSum=-0.177;DB;DP=99;FS=0.683;MQ=60.00;MQRankSum=1.509;QD=15.04;ReadPosRankSum=1.222;SOR=0.780	GT:AD:DP:GQ:PL	0/0:99,0:99:99:0,297,4158
1	24408015	rs10903090	C	G	668.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.128;DB;DP=69;FS=5.891;MQ=60.00;MQRankSum=1.031;QD=13.36;ReadPosRankSum=3.310;SOR=1.486	GT:AD:DP:GQ:PL	0/0:69,0:69:99:0,206,2880
1	24408414	rs4313343	C	T	15.26	LowQual;SNP_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=0.261;ClippingRankSum=-0.261;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=-1.338;QD=1.17;ReadPosRankSum=0.851;SOR=0.017	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1182
1	24408765	rs4333801	T	C	425.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.374;DB;DP=42;FS=1.710;MQ=60.00;MQRankSum=-2.390;QD=13.29;ReadPosRankSum=0.206;SOR=0.316	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1764
1	24409165	rs4320728	C	T	3137.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=-0.340;DB;DP=80;FS=2.198;MQ=59.96;MQRankSum=-0.169;QD=15.61;ReadPosRankSum=-0.455;SOR=0.558	GT:AD:DP:GQ:PL	0/1:45,35:80:99:1266,0,1733
1	24409191	rs4320729	C	T	1714.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.998;ClippingRankSum=-0.279;DB;DP=86;FS=5.725;MQ=60.00;MQRankSum=1.154;QD=17.49;ReadPosRankSum=1.458;SOR=0.389	GT:AD:DP:GQ:PL	0/0:86,0:86:99:0,259,3612
1	24410751	rs10903093	T	C	752.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.427;ClippingRankSum=-0.029;DB;DP=55;FS=2.684;MQ=60.00;MQRankSum=1.233;QD=13.93;ReadPosRankSum=0.662;SOR=0.307	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,165,2336
1	24413159	rs6424152	T	C	1730.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.318;ClippingRankSum=-1.684;DB;DP=100;FS=0.000;MQ=60.00;MQRankSum=-0.524;QD=17.30;ReadPosRankSum=1.612;SOR=0.679	GT:AD:DP:GQ:PL	0/0:99,1:100:99:0,290,4182
1	24413427	rs6686608	T	G	1113.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.071;ClippingRankSum=-0.757;DB;DP=59;FS=2.236;MQ=60.00;MQRankSum=-0.550;QD=17.13;ReadPosRankSum=0.383;SOR=1.201	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,178,2534
1	24416059	rs4393101	T	C	7940.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MQ=60.00;QD=28.02;SOR=2.820	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2039,141,0
1	24416070	rs7533060	G	C	2105.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=1.057;DB;DP=52;FS=2.409;MQ=60.00;MQRankSum=0.462;QD=18.97;ReadPosRankSum=-0.042;SOR=0.961	GT:AD:DP:GQ:PL	0/1:26,26:52:99:933,0,938
1	24416133	rs4276859	C	T	3040.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.072;DB;DP=82;FS=2.278;MQ=60.00;MQRankSum=0.807;QD=17.27;ReadPosRankSum=2.042;SOR=0.544	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1472,0,1558
1	24416628	rs72648548	T	C	3646.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.450;DB;DP=91;FS=0.955;MQ=60.00;MQRankSum=-1.365;QD=16.88;ReadPosRankSum=-1.731;SOR=0.755	GT:AD:DP:GQ:PL	0/0:91,0:91:99:0,272,3729
1	24417197	rs72648550	T	C	1942.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.832;ClippingRankSum=-0.610;DB;DP=106;FS=17.796;MQ=60.00;MQRankSum=0.528;QD=18.50;ReadPosRankSum=1.309;SOR=0.073	GT:AD:DP:GQ:PL	0/0:106,0:106:99:0,317,4483
1	24417415	rs6700245	T	C	2005.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.553;ClippingRankSum=1.233;DB;DP=133;FS=5.247;MQ=60.00;MQRankSum=0.929;QD=16.04;ReadPosRankSum=3.502;SOR=1.416	GT:AD:DP:GQ:PL	0/0:133,0:133:99:0,400,5650
1	24434595	rs11249170	T	C	14871.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;FS=0.000;MQ=60.00;QD=28.48;SOR=1.757	GT:AD:DP:GQ:PL	1/1:0,120:120:99:5088,360,0
1	24438424	rs141538053	GCA	G	29.53	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-0.720;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=-0.720;QD=9.84;ReadPosRankSum=0.720;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:29:67,0,29
1	24447214	rs3795300	G	A	9783.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.000;MQ=60.00;QD=26.58;SOR=5.348	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3127,222,0
1	24447468	rs3795299	G	C	3094.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.660;ClippingRankSum=-1.352;DB;DP=152;FS=1.507;MQ=60.00;MQRankSum=0.200;QD=20.36;ReadPosRankSum=1.646;SOR=0.743	GT:AD:DP:GQ:PL	0/1:69,83:152:99:3125,0,2493
1	24447943	rs34967816	G	A	6369.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.714;ClippingRankSum=-1.175;DB;DP=168;FS=0.000;MQ=60.00;MQRankSum=-0.541;QD=16.81;ReadPosRankSum=1.225;SOR=0.725	GT:AD:DP:GQ:PL	0/0:168,0:168:99:0,503,7075
1	24450205	rs12071691	C	T	3131.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.772;DB;DP=54;FS=9.840;MQ=60.00;MQRankSum=0.172;QD=17.50;ReadPosRankSum=0.281;SOR=1.473	GT:AD:DP:GQ:PL	0/1:27,27:54:99:1003,0,916
1	24450261	rs11249199	G	A	1975.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.348;ClippingRankSum=0.900;DB;DP=36;FS=1.186;MQ=60.00;MQRankSum=-1.185;QD=18.13;ReadPosRankSum=-0.736;SOR=0.518	GT:AD:DP:GQ:PL	0/1:19,17:36:99:631,0,655
1	24454688	rs16829204	C	T	3441.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.552;ClippingRankSum=1.105;DB;DP=71;FS=9.947;MQ=60.00;MQRankSum=-0.224;QD=19.01;ReadPosRankSum=0.464;SOR=1.247	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,213,3011
1	24460797	rs17852649	T	G	6615.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.118;ClippingRankSum=-1.030;DB;DP=58;FS=2.565;MQ=60.00;MQRankSum=0.457;QD=34.28;ReadPosRankSum=-0.094;SOR=0.477	GT:AD:DP:GQ:PL	0/1:30,28:58:99:1017,0,1043
1	24463563	rs4486393	C	T	2548.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;ClippingRankSum=0.453;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-1.179;QD=20.07;ReadPosRankSum=1.232;SOR=0.885	GT:AD:DP:GQ:PL	0/1:18,16:34:99:568,0,643
1	24463854	rs41268137	C	T	2847.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.529;ClippingRankSum=-0.338;DB;DP=62;FS=7.932;MQ=60.00;MQRankSum=-0.036;QD=19.11;ReadPosRankSum=0.132;SOR=1.227	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,186,2537
1	24464006	.	CT	C	108.90	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.294;ClippingRankSum=1.022;DP=10;FS=0.000;MQ=60.41;MQRankSum=-0.434;QD=1.24;ReadPosRankSum=0.938;SOR=0.693	GT:AD:DP:GQ:PL	0/0:9,1:10:1:0,1,129
1	24465113	rs10903022	C	T	1807.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=-2.138;DB;DP=99;FS=6.628;MQ=60.00;MQRankSum=0.543;QD=18.07;ReadPosRankSum=2.629;SOR=1.144	GT:AD:DP:GQ:PL	0/1:48,51:99:99:1838,0,1767
1	24484108	rs72648587	G	A	4438.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.459;ClippingRankSum=-0.804;DB;DP=136;FS=0.827;MQ=60.00;MQRankSum=-0.153;QD=17.68;ReadPosRankSum=-2.300;SOR=0.755	GT:AD:DP:GQ:PL	0/0:136,0:136:99:0,408,5865
1	24484441	rs946671	A	G	11446.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;FS=0.000;MQ=60.00;QD=31.53;SOR=1.881	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3726,264,0
1	24485518	rs10751769	T	C	6872.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=60.00;QD=32.12;SOR=7.403	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1752,126,0
1	24485813	rs4649194	T	C	12883.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;FS=0.000;MQ=60.00;QD=27.55;SOR=0.706	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3649,263,0
1	24485941	rs4649195	T	C	8043.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=-0.943;DB;DP=118;FS=0.904;MQ=60.00;MQRankSum=2.014;QD=21.17;ReadPosRankSum=0.417;SOR=0.626	GT:AD:DP:GQ:PL	0/1:42,76:118:99:2901,0,1366
1	24486216	rs34545094	GT	G	827.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.212;DB;DP=29;FS=0.000;MQ=60.28;MQRankSum=-1.239;QD=5.44;ReadPosRankSum=1.637;SOR=0.941	GT:AD:DP:GQ:PL	0/1:16,13:29:99:234,0,558
1	24487760	rs7552000	T	C	5608.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.00;QD=30.43;SOR=4.375	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1509,113,0
1	24495722	rs4649197	G	A	1781.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.665;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=0.941;QD=17.64;ReadPosRankSum=0.810;SOR=0.693	GT:AD:DP:GQ:PL	0/1:12,15:27:99:544,0,432
1	24495839	rs72648600	T	C	2187.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.066;ClippingRankSum=-0.608;DB;DP=40;FS=0.000;MQ=60.00;MQRankSum=-1.079;QD=16.70;ReadPosRankSum=2.220;SOR=0.653	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,120,1724
1	24496085	rs34654982	G	A	2683.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.254;ClippingRankSum=-0.812;DB;DP=67;FS=0.000;MQ=60.00;MQRankSum=1.081;QD=16.56;ReadPosRankSum=1.192;SOR=0.640	GT:AD:DP:GQ:PL	0/0:67,0:67:99:0,201,2860
1	24507433	rs6680101	A	G	4225.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.617;DB;DP=46;FS=6.784;MQ=60.00;MQRankSum=-2.366;QD=34.07;ReadPosRankSum=0.132;SOR=4.077	GT:AD:DP:GQ:PL	0/1:26,20:46:99:738,0,2015
1	24507437	rs6665649	G	A	4204.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=-0.788;DB;DP=42;FS=6.812;MQ=60.00;MQRankSum=0.982;QD=33.70;ReadPosRankSum=1.092;SOR=4.094	GT:AD:DP:GQ:PL	0/1:25,17:42:99:712,0,1986
1	24513608	rs12094257	C	T	144.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.466;DB;DP=3;FS=3.424;MQ=60.00;MQRankSum=0.717;QD=13.17;ReadPosRankSum=0.143;SOR=2.636	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
1	24513768	rs4090311	G	A	1409.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.000;MQ=60.00;QD=29.78;SOR=2.049	GT:AD:DP:GQ:PL	1/1:0,14:14:42:566,42,0
1	24513924	rs138889066	AGG	A	759.30	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.126;ClippingRankSum=-0.034;DB;DP=10;FS=0.000;MQ=60.39;MQRankSum=0.102;QD=27.12;ReadPosRankSum=0.375;SOR=1.839	GT:AD:DP:GQ:PL	1/1:0,10:10:30:354,30,0
1	24513928	.	G	GGGGGA	81.91	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.921;ClippingRankSum=-0.717;DP=10;FS=0.000;MQ=60.40;MQRankSum=1.194;QD=4.82;ReadPosRankSum=-0.444;SOR=0.173	GT:AD:DP:GQ:PL	0/0:10,0:10:30:0,30,450
1	24657860	rs2486669	A	G	2290.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=2.043;DB;DP=53;FS=8.292;MQ=60.00;MQRankSum=0.070;QD=18.03;ReadPosRankSum=2.547;SOR=1.467	GT:AD:DP:GQ:PL	0/1:25,28:53:99:1072,0,881
1	24658063	rs2486668	C	G	2103.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=-1.911;DB;DP=40;FS=0.000;MQ=60.00;MQRankSum=0.734;QD=18.29;ReadPosRankSum=2.452;SOR=0.683	GT:AD:DP:GQ:PL	0/1:16,24:40:99:934,0,541
1	24662903	rs12062028	G	C	3729.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.956;DB;DP=82;FS=4.238;MQ=60.00;MQRankSum=0.098;QD=19.52;ReadPosRankSum=0.348;SOR=0.087	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1414,0,1542
1	24668667	rs11576645	C	G	3708.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=-0.216;DB;DP=80;FS=2.054;MQ=60.00;MQRankSum=0.332;QD=17.57;ReadPosRankSum=3.076;SOR=0.564	GT:AD:DP:GQ:PL	0/1:42,38:80:99:1379,0,1562
1	24668842	rs4648974	T	C	4179.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=-0.829;DB;DP=68;FS=0.000;MQ=60.00;MQRankSum=-0.742;QD=19.53;ReadPosRankSum=-1.079;SOR=0.706	GT:AD:DP:GQ:PL	0/1:26,42:68:99:1507,0,882
1	24671464	.	ACCCTCCACACCTGTGCC	A	881.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;ClippingRankSum=0.821;DP=17;FS=7.064;MQ=59.05;MQRankSum=-1.055;QD=11.31;ReadPosRankSum=0.043;SOR=0.062	GT:AD:DP:GQ:PL	0/1:9,8:17:99:304,0,979
1	24673866	rs6691722	A	G	4330.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=1.043;DB;DP=64;FS=2.414;MQ=60.00;MQRankSum=-0.823;QD=18.59;ReadPosRankSum=1.940;SOR=0.476	GT:AD:DP:GQ:PL	0/1:24,40:64:99:1484,0,864
1	24680915	rs12030057	C	T	3213.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=-0.676;DB;DP=54;FS=7.385;MQ=60.00;MQRankSum=-0.305;QD=16.15;ReadPosRankSum=1.746;SOR=1.204	GT:AD:DP:GQ:PL	0/1:29,25:54:99:917,0,1095
1	24684101	rs56095151	C	T	2438.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.079;ClippingRankSum=0.148;DB;DP=61;FS=2.163;MQ=60.00;MQRankSum=-0.134;QD=19.35;ReadPosRankSum=0.256;SOR=1.016	GT:AD:DP:GQ:PL	0/0:61,0:61:99:0,183,2591
1	24687653	rs532147	T	C	2853.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.134;ClippingRankSum=1.632;DB;DP=48;FS=0.000;MQ=60.00;MQRankSum=0.708;QD=26.67;ReadPosRankSum=1.431;SOR=0.608	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,2088
1	24690414	rs542969	A	G	2485.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.804;ClippingRankSum=-1.284;DB;DP=36;FS=6.072;MQ=60.00;MQRankSum=-1.359;QD=30.32;ReadPosRankSum=1.354;SOR=0.072	GT:AD:DP:GQ:PL	0/0:36,0:36:99:0,107,1504
1	24690764	rs545809	T	A	8049.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.717;ClippingRankSum=1.389;DB;DP=131;FS=4.104;MQ=60.00;MQRankSum=2.067;QD=28.75;ReadPosRankSum=2.161;SOR=1.008	GT:AD:DP:GQ:PL	0/0:131,0:131:99:0,393,5595
1	24706329	rs41307808	C	A	2428.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.011;ClippingRankSum=-0.152;DB;DP=56;FS=7.973;MQ=60.00;MQRankSum=1.393;QD=16.63;ReadPosRankSum=-0.870;SOR=0.342	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,168,2434
1	24718079	rs560219	C	A	2281.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.312;ClippingRankSum=-0.934;DB;DP=93;FS=1.665;MQ=60.00;MQRankSum=-0.028;QD=16.77;ReadPosRankSum=-0.099;SOR=0.561	GT:AD:DP:GQ:PL	0/0:93,0:93:99:0,279,3860
1	24727678	rs2078445	C	T	2666.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.342;DB;DP=33;FS=4.368;MQ=60.00;MQRankSum=-1.727;QD=27.49;ReadPosRankSum=-0.068;SOR=0.261	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1443
1	24745704	rs760969	T	G	83.78	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.382;DB;DP=4;FS=3.090;MQ=60.00;MQRankSum=0.382;QD=20.94;ReadPosRankSum=0.382;SOR=0.889	GT:AD:DP:GQ:PL	0/0:4,0:4:12:0,12,179
1	24745917	rs72652555	G	A	695.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.275;ClippingRankSum=-0.705;DB;DP=49;FS=0.000;MQ=60.00;MQRankSum=1.148;QD=16.55;ReadPosRankSum=0.923;SOR=0.143	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2093
1	24766542	rs72652566	G	A	2180.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.106;ClippingRankSum=0.869;DB;DP=95;FS=1.789;MQ=60.00;MQRankSum=-1.752;QD=21.37;ReadPosRankSum=2.504;SOR=0.862	GT:AD:DP:GQ:PL	0/0:95,0:95:99:0,285,3997
1	24768616	rs72652567	G	A	2826.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=-0.608;DB;DP=58;FS=2.750;MQ=60.00;MQRankSum=0.808;QD=17.45;ReadPosRankSum=2.958;SOR=0.948	GT:AD:DP:GQ:PL	0/1:31,27:58:99:985,0,1134
1	24768778	rs4648863	G	C	781.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.042;ClippingRankSum=-0.602;DB;DP=39;FS=1.627;MQ=60.00;MQRankSum=0.757;QD=16.98;ReadPosRankSum=0.515;SOR=1.007	GT:AD:DP:GQ:PL	0/0:39,0:39:99:0,117,1695
1	24775967	rs4648989	G	A	1551.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.529;DB;DP=79;FS=1.291;MQ=60.00;MQRankSum=0.027;QD=19.15;ReadPosRankSum=0.051;SOR=0.581	GT:AD:DP:GQ:PL	0/0:79,0:79:99:0,238,3363
1	24779873	rs1883462	C	T	737.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.548;ClippingRankSum=1.874;DB;DP=35;FS=8.397;MQ=60.00;MQRankSum=0.600;QD=22.34;ReadPosRankSum=1.382;SOR=0.086	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1492
1	24780356	rs11249117	C	A	368.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.323;ClippingRankSum=-0.517;DB;DP=24;FS=1.418;MQ=60.00;MQRankSum=-0.920;QD=13.63;ReadPosRankSum=1.001;SOR=0.926	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,1015
1	24780521	.	CT	C	164.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.481;DP=9;FS=3.157;MQ=60.14;MQRankSum=-0.481;QD=4.10;ReadPosRankSum=0.137;SOR=0.606	GT:AD:DP:GQ:PL	0/1:4,5:9:73:87,0,73
1	24784197	rs195718	T	C	1439.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.125;DB;DP=64;FS=0.847;MQ=60.00;MQRankSum=-1.585;QD=16.93;ReadPosRankSum=1.368;SOR=0.806	GT:AD:DP:GQ:PL	0/0:64,0:64:99:0,192,2783
1	24792617	rs195725	T	A	1962.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.949;ClippingRankSum=1.492;DB;DP=85;FS=1.225;MQ=60.00;MQRankSum=-0.422;QD=18.17;ReadPosRankSum=2.410;SOR=0.571	GT:AD:DP:GQ:PL	0/0:85,0:85:99:0,254,3585
1	24857657	.	CT	C	61.96	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=-0.851;DP=19;FS=0.000;MQ=60.00;MQRankSum=0.089;QD=0.72;ReadPosRankSum=-0.203;SOR=0.039	GT:AD:DP:GQ:PL	0/1:15,4:19:38:38,0,332
1	24922129	rs10903095	G	A	4448.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.019;DB;DP=52;FS=0.000;MQ=60.00;MQRankSum=-1.181;QD=29.07;ReadPosRankSum=0.575;SOR=0.958	GT:AD:DP:GQ:PL	0/1:25,27:52:99:1011,0,886
1	24927561	rs4553122	T	C	7609.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-1.468;DB;DP=51;FS=8.428;MQ=60.00;MQRankSum=0.537;QD=30.80;ReadPosRankSum=0.353;SOR=1.334	GT:AD:DP:GQ:PL	0/1:27,24:51:99:902,0,1033
1	24927625	rs4378146	C	A	5328.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=2.063;DB;DP=53;FS=7.470;MQ=60.00;MQRankSum=-0.108;QD=28.80;ReadPosRankSum=0.860;SOR=1.464	GT:AD:DP:GQ:PL	0/1:21,32:53:99:1182,0,704
1	24927727	rs55691364	C	T	759.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.089;ClippingRankSum=-0.224;DB;DP=31;FS=7.873;MQ=60.00;MQRankSum=-0.706;QD=24.49;ReadPosRankSum=0.681;SOR=0.050	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,2462
1	24927731	rs56316061	G	A	689.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.056;ClippingRankSum=-0.596;DB;DP=26;FS=3.302;MQ=60.00;MQRankSum=0.615;QD=22.97;ReadPosRankSum=-0.164;SOR=0.116	GT:AD:DP:GQ:PL	0/0:26,0:26:81:0,81,2307
1	24969973	.	ACC	A	1431.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=-0.113;DP=10;FS=0.000;MQ=60.37;MQRankSum=0.113;QD=16.46;ReadPosRankSum=1.396;SOR=4.743	GT:AD:DP:GQ:PL	0/1:3,7:10:54:173,0,54
1	24973106	.	A	AT	423.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.018;ClippingRankSum=-0.722;DP=32;FS=0.000;MQ=60.00;MQRankSum=0.278;QD=9.84;ReadPosRankSum=-0.201;SOR=0.042	GT:AD:DP:GQ:PL	0/0:32,0:32:96:0,96,915
1	24978892	rs60568839	CA	C	72.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=2.069;DB;DP=5;FS=0.000;MQ=60.00;MQRankSum=-0.337;QD=2.70;ReadPosRankSum=0.144;SOR=0.593	GT:AD:DP:GQ:PL	0/1:3,2:5:34:34,0,59
1	24987792	rs41300132	A	G	841.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.368;ClippingRankSum=-0.079;DB;DP=61;FS=5.061;MQ=60.00;MQRankSum=-0.449;QD=14.02;ReadPosRankSum=0.477;SOR=0.291	GT:AD:DP:GQ:PL	0/0:61,0:61:99:0,184,2611
1	24989762	rs4649011	G	T	6089.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.00;QD=32.05;SOR=2.353	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1708,117,0
1	25098245	rs9332415	T	C	4129.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.305;DB;DP=35;FS=6.120;MQ=60.00;MQRankSum=-0.837;QD=22.81;ReadPosRankSum=0.759;SOR=0.151	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1501,105,0
1	25098335	rs77984282	CA	C	1326.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.813;ClippingRankSum=-0.164;DB;DP=88;FS=1.508;MQ=60.00;MQRankSum=0.035;QD=16.79;ReadPosRankSum=-1.045;SOR=0.528	GT:AD:DP:GQ:PL	0/0:88,0:88:99:0,265,3288
1	25098341	rs7548438	C	T	7513.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.863;DB;DP=89;FS=32.668;MQ=60.00;MQRankSum=2.776;QD=24.88;ReadPosRankSum=-0.375;SOR=2.024	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3762,267,0
1	25140825	rs3890756	A	G	2716.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.109;ClippingRankSum=-1.050;DB;DP=54;FS=0.000;MQ=60.00;MQRankSum=0.464;QD=17.52;ReadPosRankSum=1.952;SOR=0.734	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,163,2330
1	25153692	rs4649022	G	A	9585.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.000;MQ=60.00;QD=35.21;SOR=1.807	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3270,231,0
1	25254317	rs7517302	C	T	5382.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.005;ClippingRankSum=0.876;DB;DP=43;FS=0.000;MQ=60.00;MQRankSum=1.207;QD=33.64;ReadPosRankSum=0.583;SOR=0.894	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1776,129,0
1	25256444	rs71514255	G	A	3436.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;ClippingRankSum=-0.504;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=-2.355;QD=30.40;ReadPosRankSum=0.514;SOR=3.588	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1193,81,0
1	25291010	rs6672420	A	T	1436.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.844;ClippingRankSum=-1.478;DB;DP=80;FS=1.687;MQ=60.00;MQRankSum=-1.284;QD=15.12;ReadPosRankSum=2.197;SOR=0.859	GT:AD:DP:GQ:PL	0/0:80,0:80:99:0,240,3278
1	25554719	rs35324907	G	A	2676.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.101;ClippingRankSum=0.873;DB;DP=59;FS=1.447;MQ=59.89;MQRankSum=-0.609;QD=17.05;ReadPosRankSum=2.419;SOR=0.517	GT:AD:DP:GQ:PL	0/1:36,23:59:99:812,0,1302
1	25570081	rs1043879	T	C	1090.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=-2.025;DB;DP=58;FS=0.000;MQ=60.00;MQRankSum=0.106;QD=18.48;ReadPosRankSum=-0.418;SOR=0.706	GT:AD:DP:GQ:PL	0/1:27,31:58:99:1121,0,1011
1	25570550	rs5773124	A	AT	1596.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;ClippingRankSum=-0.215;DB;DP=22;FS=0.000;MQ=60.00;MQRankSum=-0.063;QD=19.24;ReadPosRankSum=-0.772;SOR=5.196	GT:AD:DP:GQ:PL	0/1:3,19:22:14:420,0,14
1	25573564	rs41303885	G	C	370.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.992;ClippingRankSum=-0.834;DB;DP=24;FS=0.000;MQ=60.00;MQRankSum=-0.393;QD=13.71;ReadPosRankSum=0.365;SOR=0.111	GT:AD:DP:GQ:PL	0/0:24,0:24:72:0,72,1048
1	25611035	rs2301153	G	C	28288.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=173;FS=0.000;MQ=47.89;QD=24.18;SOR=1.846	GT:AD:DP:GQ:PL	1/1:0,173:173:99:6954,520,0
1	25629766	rs201798270	TTCTC	T	5188.10	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.167;ClippingRankSum=0.255;DB;DP=49;FS=5.172;MQ=39.84;MQRankSum=-2.029;QD=32.65;ReadPosRankSum=-0.411;SOR=1.714	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2993
1	25634143	rs2427766	T	C	1586.14	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.302;ClippingRankSum=1.522;DB;DP=27;FS=1.918;MQ=40.59;MQRankSum=-5.620;QD=30.06;ReadPosRankSum=-1.759;SOR=0.314	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1101
1	25643553	rs199998930	T	C	560.02	SNP_MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MQ=28.74;QD=31.11;SOR=5.892	GT:AD:DP:GQ:PL	1/1:0,7:7:21:229,21,0
1	25678002	.	TA	T	1640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.177;ClippingRankSum=-0.341;DP=21;FS=0.000;MQ=60.49;MQRankSum=0.205;QD=18.64;ReadPosRankSum=1.080;SOR=5.042	GT:AD:DP:GQ:PL	1/1:2,19:21:10:411,10,0
1	25678238	rs3093616	T	A	6348.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.000;MQ=60.00;QD=32.84;SOR=3.767	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1524,105,0
1	25683092	rs3093653	G	A	2128.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.073;ClippingRankSum=-0.482;DB;DP=55;FS=4.746;MQ=60.00;MQRankSum=1.472;QD=18.35;ReadPosRankSum=-0.654;SOR=0.061	GT:AD:DP:GQ:PL	0/1:31,24:55:99:894,0,1091
1	25697212	rs71577762	C	CTATTT	340.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=-0.088;DB;DP=16;FS=2.521;MQ=57.86;MQRankSum=-0.791;QD=3.15;ReadPosRankSum=0.088;SOR=0.201	GT:AD:DP:GQ:PL	0/1:11,5:16:99:151,0,654
1	25717139	rs636889	C	T	2765.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=-1.520;DB;DP=72;FS=4.914;MQ=44.29;MQRankSum=-0.845;QD=16.08;ReadPosRankSum=0.279;SOR=1.736	GT:AD:DP:GQ:PL	0/1:39,33:72:99:1167,0,1349
1	25747230	rs586178	G	C	3490.16	SNP_MappingQuality	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.064;DB;DP=100;FS=8.245;MQ=39.92;MQRankSum=-10.103;QD=13.12;ReadPosRankSum=1.524;SOR=1.150	GT:AD:DP:GQ:PL	0/1:65,35:100:99:1073,0,2273
1	25780668	rs34006994	C	T	1911.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=-0.957;DB;DP=26;FS=6.073;MQ=60.00;MQRankSum=0.504;QD=25.48;ReadPosRankSum=0.323;SOR=0.151	GT:AD:DP:GQ:PL	0/1:12,14:26:99:539,0,459
1	25780889	rs141203814	A	ATG	1822.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.255;DB;DP=22;FS=0.000;MQ=61.64;MQRankSum=0.596;QD=23.36;ReadPosRankSum=0.119;SOR=1.257	GT:AD:DP:GQ:PL	0/1:14,8:22:99:288,0,552
1	25780893	rs61775167	A	G	1831.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.224;ClippingRankSum=0.630;DB;DP=22;FS=0.000;MQ=61.63;MQRankSum=-0.087;QD=25.43;ReadPosRankSum=0.064;SOR=1.226	GT:AD:DP:GQ:PL	0/1:14,8:22:99:288,0,552
1	25780929	rs146881778	ATGTG	A,ATG	604.87	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=5;FS=0.000;MQ=60.00;QD=15.12;SOR=5.784	GT:AD:DP:GQ:PL	1/2:0,2,3:5:51:169,84,78,65,0,51
1	25783066	rs35497030	A	G	3292.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.350;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=1.570;QD=31.06;ReadPosRankSum=0.670;SOR=2.393	GT:AD:DP:GQ:PL	0/1:11,16:27:99:613,0,361
1	25785451	rs35530120	A	G	3568.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=-1.956;DB;DP=27;FS=10.781;MQ=60.00;MQRankSum=0.109;QD=31.03;ReadPosRankSum=0.274;SOR=3.115	GT:AD:DP:GQ:PL	0/1:9,18:27:99:686,0,307
1	25880261	rs34367689	CA	C	46.55	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.340;ClippingRankSum=-1.791;DB;DP=5;FS=0.000;MQ=60.00;MQRankSum=0.340;QD=2.12;ReadPosRankSum=0.872;SOR=0.223	GT:AD:DP:GQ:PL	0/0:4,1:5:4:0,4,63
1	25889342	rs10687390	CAG	C	1591.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.469;ClippingRankSum=0.619;DB;DP=110;FS=4.922;MQ=60.00;MQRankSum=-0.419;QD=15.45;ReadPosRankSum=0.595;SOR=0.417	GT:AD:DP:GQ:PL	0/0:109,1:110:99:0,286,4851
1	25889422	rs12096438	C	T	2046.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.935;ClippingRankSum=-1.008;DB;DP=111;FS=4.108;MQ=60.00;MQRankSum=-0.859;QD=18.77;ReadPosRankSum=0.649;SOR=0.806	GT:AD:DP:GQ:PL	0/0:110,1:111:99:0,288,4675
1	25889632	rs6687605	T	C	1426.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.943;ClippingRankSum=-2.006;DB;DP=60;FS=6.074;MQ=60.00;MQRankSum=1.616;QD=18.76;ReadPosRankSum=1.256;SOR=1.389	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,180,2512
1	25889672	rs6688931	G	A	1106.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.547;ClippingRankSum=1.365;DB;DP=59;FS=8.557;MQ=60.00;MQRankSum=-0.142;QD=21.69;ReadPosRankSum=1.754;SOR=0.041	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,177,2483
1	25890050	rs6661159	A	G	972.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.294;ClippingRankSum=-0.268;DB;DP=65;FS=0.000;MQ=60.00;MQRankSum=0.881;QD=13.69;ReadPosRankSum=1.565;SOR=0.710	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,196,2820
1	25890189	rs28969504	A	G	1363.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.123;DB;DP=141;FS=2.059;MQ=60.00;MQRankSum=-0.160;QD=13.36;ReadPosRankSum=2.978;SOR=0.894	GT:AD:DP:GQ:PL	0/0:141,0:141:99:0,423,5992
1	25890247	rs41291058	C	T	1664.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.930;ClippingRankSum=0.905;DB;DP=136;FS=4.428;MQ=60.00;MQRankSum=0.115;QD=13.00;ReadPosRankSum=0.967;SOR=0.400	GT:AD:DP:GQ:PL	0/0:135,1:136:99:0,364,5715
1	25890835	rs4075184	G	A	99.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.727;DB;DP=1;FS=4.771;MQ=60.00;MQRankSum=0.727;QD=24.78;ReadPosRankSum=-0.727;SOR=2.788	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	25891174	rs3856239	G	A	314.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.751;DB;DP=4;FS=0.000;MQ=60.00;MQRankSum=0.751;QD=34.91;ReadPosRankSum=0.751;SOR=0.446	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
1	25893221	rs4523506	G	T	2329.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.051;DB;DP=18;FS=3.019;MQ=60.00;MQRankSum=-0.193;QD=34.13;ReadPosRankSum=0.802;SOR=2.082	GT:AD:DP:GQ:PL	1/1:0,18:18:54:788,54,0
1	25893242	rs4418583	T	C	2470.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.929;ClippingRankSum=1.126;DB;DP=20;FS=3.405;MQ=60.00;MQRankSum=-1.258;QD=30.22;ReadPosRankSum=-0.492;SOR=2.320	GT:AD:DP:GQ:PL	1/1:0,20:20:63:939,63,0
1	25893243	rs4603124	G	A	2470.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.903;DB;DP=21;FS=3.460;MQ=60.00;MQRankSum=-2.173;QD=28.44;ReadPosRankSum=-1.914;SOR=2.353	GT:AD:DP:GQ:PL	1/1:0,21:21:63:939,63,0
1	25895406	rs3924236	C	T	100.15	PASS	AC=0;AF=0.00;AN=0;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MQ=60.00;MQRankSum=-0.727;QD=25.04;ReadPosRankSum=0.727;SOR=2.788	GT	./.
1	26085048	rs11321223	AG	A	11036.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;FS=0.000;MQ=60.54;QD=30.83;SOR=6.079	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3404,322,0
1	26090072	rs807270	A	G	14390.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;FS=0.000;MQ=60.03;QD=33.29;SOR=1.345	GT:AD:DP:GQ:PL	1/1:0,102:102:99:4325,306,0
1	26098107	rs2072747	G	A	4532.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.030;ClippingRankSum=-1.828;DB;DP=35;FS=4.433;MQ=60.00;MQRankSum=-0.175;QD=28.21;ReadPosRankSum=-1.556;SOR=0.259	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1424,104,0
1	26098333	rs807264	G	A	4943.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.000;MQ=60.00;QD=24.55;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,33:33:98:1359,98,0
1	26098350	rs807263	G	A	597.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.910;DB;DP=25;FS=3.060;MQ=60.00;MQRankSum=-1.009;QD=15.31;ReadPosRankSum=0.033;SOR=0.131	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,1034
1	26107321	rs807274	A	C	3125.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=60.00;QD=30.18;SOR=4.323	GT:AD:DP:GQ:PL	1/1:0,22:22:66:920,66,0
1	26107688	rs807273	C	A	14045.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;FS=0.000;MQ=60.00;QD=32.28;SOR=0.724	GT:AD:DP:GQ:PL	1/1:0,101:101:99:4315,303,0
1	26109237	rs12567324	A	G	8771.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.050;ClippingRankSum=2.196;DB;DP=74;FS=0.000;MQ=60.00;MQRankSum=-0.144;QD=36.01;ReadPosRankSum=0.880;SOR=1.261	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3145,222,0
1	26110065	rs3820514	A	G	7812.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.648;ClippingRankSum=-0.332;DB;DP=67;FS=4.132;MQ=60.00;MQRankSum=0.557;QD=33.67;ReadPosRankSum=-0.837;SOR=0.299	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2704,199,0
1	26110143	rs3767877	G	A	10638.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.876;DB;DP=83;FS=1.182;MQ=60.00;MQRankSum=1.185;QD=34.54;ReadPosRankSum=-0.055;SOR=0.809	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3549,249,0
1	26127020	rs13373825	G	A	1007.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MQ=60.00;QD=27.82;SOR=3.014	GT:AD:DP:GQ:PL	1/1:0,7:7:21:293,21,0
1	26127425	rs6659086	G	A	8615.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.000;MQ=60.00;QD=30.06;SOR=4.439	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2608,183,0
1	26128307	rs10902683	C	T	5478.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.000;MQ=60.00;QD=32.87;SOR=6.043	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1395,96,0
1	26128484	.	CT	C	303.89	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.677;DP=39;FS=1.949;MQ=60.10;MQRankSum=-1.202;QD=1.50;ReadPosRankSum=0.174;SOR=1.008	GT:AD:DP:GQ:PL	0/1:33,6:39:25:25,0,630
1	26131459	rs11247735	G	A	816.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.952;DB;DP=10;FS=0.000;MQ=60.00;MQRankSum=-0.708;QD=28.14;ReadPosRankSum=-1.000;SOR=0.437	GT:AD:DP:GQ:PL	0/1:4,6:10:99:228,0,149
1	26131654	rs7349185	G	A	6700.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;FS=0.000;MQ=60.00;QD=36.63;SOR=5.191	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2191,154,0
1	26138136	rs760598	C	A	19874.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;FS=0.000;MQ=60.00;QD=30.46;SOR=0.706	GT:AD:DP:GQ:PL	1/1:0,137:137:99:5933,411,0
1	26138262	rs760597	T	C	13540.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;ClippingRankSum=1.318;DB;DP=89;FS=0.000;MQ=60.00;MQRankSum=1.445;QD=29.03;ReadPosRankSum=0.011;SOR=1.818	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3689,266,0
1	26138451	rs11247744	A	G	3867.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.000;MQ=60.00;QD=29.84;SOR=7.658	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1145,81,0
1	26139055	.	A	AACAC,AACACAC	595.92	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.868;DP=5;FS=0.000;MQ=59.87;MQRankSum=-0.434;QD=16.55;ReadPosRankSum=-0.868;SOR=4.174	GT:AD:DP:GQ:PL	1/2:1,2,2:5:15:150,15,37,19,0,62
1	26139137	rs10902685	C	T	3200.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=59.75;QD=31.32;SOR=4.281	GT:AD:DP:GQ:PL	1/1:0,22:22:66:910,66,0
1	26139392	rs3738451	A	G	5080.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.00;QD=28.81;SOR=4.039	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1674,117,0
1	26139444	rs10751726	G	A	4272.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=60.00;QD=30.23;SOR=9.230	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1347,93,0
1	26139879	rs6676413	C	G	4457.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.000;MQ=60.00;QD=29.98;SOR=5.689	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1409,104,0
1	26139919	rs6676509	C	T	5686.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.000;MQ=60.00;QD=36.81;SOR=5.861	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1676,122,0
1	26140573	rs2294228	C	A	12328.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;FS=0.000;MQ=60.00;QD=29.37;SOR=1.230	GT:AD:DP:GQ:PL	1/1:0,103:103:99:4355,309,0
1	26143107	.	G	T	23.89	LowQual	AC=0;AF=0.00;AN=0;DP=2;FS=0.000;MQ=60.00;QD=11.95;SOR=0.693	GT	./.
1	26146884	rs984412	C	G	11969.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.000;MQ=60.00;QD=29.77;SOR=1.644	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3621,257,0
1	26150023	rs11247758	C	T	12362.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;FS=0.000;MQ=60.00;QD=22.87;SOR=0.741	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3801,275,0
1	26152666	rs6598923	T	C	8243.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.000;MQ=60.00;QD=36.13;SOR=5.860	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2463,174,0
1	26152758	rs6598924	A	G	15596.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;FS=0.000;MQ=60.00;QD=31.53;SOR=1.211	GT:AD:DP:GQ:PL	1/1:0,113:113:99:4813,340,0
1	26158337	rs1961580	C	T	5750.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=60.00;QD=27.19;SOR=7.599	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1827,126,0
1	26197063	rs807067	C	T	104.42	PASS	AC=0;AF=0.00;AN=0;DB;DP=4;FS=0.000;MQ=60.00;QD=34.81;SOR=1.179	GT	./.
1	26227608	.	CA	C	284.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.474;DP=7;FS=11.335;MQ=60.00;MQRankSum=-0.158;QD=3.60;ReadPosRankSum=0.896;SOR=4.565	GT:AD:DP:GQ:PL	0/1:2,5:7:20:50,0,20
1	26232356	rs213641	C	A	395.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MQ=57.42;QD=30.41;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,5:5:15:217,15,0
1	26303505	.	CTTTTTTTTT	C	148.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=-0.361;DP=4;FS=0.000;MQ=58.11;MQRankSum=0.000;QD=5.69;ReadPosRankSum=0.922;SOR=0.892	GT:AD:DP:GQ:PL	0/1:1,3:4:75:125,0,75
1	26310213	rs2275101	T	C	1029.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=-0.555;DB;DP=41;FS=1.051;MQ=60.00;MQRankSum=1.113;QD=13.03;ReadPosRankSum=-0.205;SOR=0.477	GT:AD:DP:GQ:PL	0/1:21,20:41:99:701,0,799
1	26310394	rs2275102	A	G	2344.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=-0.692;DB;DP=81;FS=4.198;MQ=60.00;MQRankSum=-0.195;QD=15.03;ReadPosRankSum=3.599;SOR=0.985	GT:AD:DP:GQ:PL	0/1:42,39:81:99:1421,0,1524
1	26310836	rs3738458	G	T	1842.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=1.755;DB;DP=46;FS=6.746;MQ=60.00;MQRankSum=0.353;QD=18.42;ReadPosRankSum=-0.198;SOR=1.341	GT:AD:DP:GQ:PL	0/1:23,23:46:99:829,0,853
1	26314564	rs2245979	T	C	2859.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.818;ClippingRankSum=-0.192;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=1.731;QD=27.76;ReadPosRankSum=0.555;SOR=1.270	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1337,93,0
1	26314625	rs2257255	G	A	1550.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.333;DB;DP=47;FS=2.192;MQ=60.00;MQRankSum=0.220;QD=16.67;ReadPosRankSum=-1.112;SOR=0.432	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1931
1	26317383	rs2992056	G	A	2126.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.043;ClippingRankSum=-0.280;DB;DP=49;FS=1.479;MQ=60.00;MQRankSum=1.092;QD=22.15;ReadPosRankSum=0.966;SOR=0.927	GT:AD:DP:GQ:PL	0/1:19,30:49:99:1173,0,669
1	26349109	rs78022960	C	CT	2439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=-1.624;DB;DP=74;FS=3.563;MQ=60.12;MQRankSum=-0.188;QD=13.26;ReadPosRankSum=1.811;SOR=0.986	GT:AD:DP:GQ:PL	0/1:41,33:74:99:919,0,1242
1	26349967	rs1938405	C	T	1489.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=-0.753;DB;DP=48;FS=4.869;MQ=60.00;MQRankSum=0.956;QD=14.60;ReadPosRankSum=2.192;SOR=1.252	GT:AD:DP:GQ:PL	0/1:28,20:48:99:670,0,1046
1	26356821	.	CTT	C	34.36	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.988;DP=1;FS=0.000;MQ=60.00;MQRankSum=-0.406;QD=6.87;ReadPosRankSum=0.406;SOR=0.693	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,30
1	26357178	.	A	AC	224.10	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.556;DP=35;FS=1.145;MQ=60.00;MQRankSum=-1.276;QD=5.60;ReadPosRankSum=0.397;SOR=0.952	GT:AD:DP:GQ:PL	0/0:33,2:35:48:0,48,819
1	26357656	rs2736831	C	A	5305.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;ClippingRankSum=-0.395;DB;DP=190;FS=2.825;MQ=60.00;MQRankSum=0.278;QD=15.84;ReadPosRankSum=2.275;SOR=0.475	GT:AD:DP:GQ:PL	0/1:116,74:190:99:2491,0,4240
1	26357667	rs11247848	G	A	7996.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.126;DB;DP=187;FS=5.145;MQ=60.00;MQRankSum=-1.143;QD=19.65;ReadPosRankSum=2.373;SOR=1.059	GT:AD:DP:GQ:PL	0/1:73,114:187:99:4192,0,2487
1	26357855	rs2802321	A	G	13720.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;FS=0.000;MQ=60.00;QD=28.82;SOR=1.346	GT:AD:DP:GQ:PL	1/1:0,100:100:99:4223,299,0
1	26358752	rs5773143	T	TA	7548.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.221;ClippingRankSum=-0.116;DB;DP=116;FS=6.334;MQ=60.12;MQRankSum=-0.448;QD=21.32;ReadPosRankSum=-1.797;SOR=0.204	GT:AD:DP:GQ:PL	1/1:0,116:116:99:4233,358,0
1	26365374	rs4659404	T	G	1550.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=-0.010;DB;DP=51;FS=1.634;MQ=60.00;MQRankSum=1.825;QD=15.82;ReadPosRankSum=1.274;SOR=0.284	GT:AD:DP:GQ:PL	0/1:30,21:51:99:741,0,1118
1	26365549	rs2997452	C	T	2562.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.997;ClippingRankSum=1.845;DB;DP=82;FS=0.000;MQ=60.00;MQRankSum=-1.325;QD=15.82;ReadPosRankSum=0.546;SOR=0.689	GT:AD:DP:GQ:PL	0/1:46,36:82:99:1316,0,1655
1	26368787	rs6686468	C	T	824.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=-0.140;DB;DP=23;FS=0.000;MQ=60.00;MQRankSum=-1.218;QD=17.54;ReadPosRankSum=1.728;SOR=0.446	GT:AD:DP:GQ:PL	0/1:14,9:23:99:329,0,524
1	26369297	rs2997451	T	C	2349.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.158;ClippingRankSum=-0.018;DB;DP=35;FS=5.229;MQ=60.00;MQRankSum=0.625;QD=26.10;ReadPosRankSum=1.567;SOR=3.156	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1473,105,0
1	26371788	rs3121763	G	A	2066.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.353;DB;DP=29;FS=5.424;MQ=60.00;MQRankSum=1.016;QD=21.30;ReadPosRankSum=0.404;SOR=1.682	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1230,87,0
1	26372144	rs6686190	A	G	2585.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.792;ClippingRankSum=-0.269;DB;DP=24;FS=6.058;MQ=60.00;MQRankSum=-0.527;QD=26.38;ReadPosRankSum=0.875;SOR=2.416	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1017,72,0
1	26378002	rs1135251	C	T	127.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.365;DB;DP=6;FS=0.000;MQ=60.00;MQRankSum=0.365;QD=21.19;ReadPosRankSum=0.000;SOR=0.412	GT:AD:DP:GQ:PL	0/1:2,4:6:71:156,0,71
1	26383645	rs144384652	CCAGGGGT	C	1139.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.404;DB;DP=65;FS=2.014;MQ=60.00;MQRankSum=-0.407;QD=15.82;ReadPosRankSum=-1.715;SOR=0.446	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,195,5802
1	26383875	rs2275947	A	G	2082.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=1.522;DB;DP=55;FS=3.886;MQ=60.00;MQRankSum=0.156;QD=18.43;ReadPosRankSum=0.761;SOR=0.393	GT:AD:DP:GQ:PL	0/1:27,28:55:99:1013,0,1004
1	26384013	rs12059101	A	G	2262.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;ClippingRankSum=0.308;DB;DP=36;FS=1.398;MQ=60.00;MQRankSum=-0.351;QD=21.96;ReadPosRankSum=1.714;SOR=0.842	GT:AD:DP:GQ:PL	0/1:19,17:36:99:581,0,702
1	26384690	rs1317709	T	G	368.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=-0.858;DB;DP=10;FS=0.000;MQ=60.00;MQRankSum=-0.328;QD=16.73;ReadPosRankSum=0.140;SOR=0.551	GT:AD:DP:GQ:PL	0/1:6,4:10:99:142,0,210
1	26385003	rs2275950	T	C	5442.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;ClippingRankSum=1.135;DB;DP=125;FS=2.798;MQ=60.00;MQRankSum=0.443;QD=18.45;ReadPosRankSum=-0.092;SOR=0.932	GT:AD:DP:GQ:PL	0/1:64,61:125:99:2258,0,2395
1	26385150	rs2275949	G	C	4952.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=-0.181;DB;DP=128;FS=4.106;MQ=60.00;MQRankSum=0.641;QD=18.69;ReadPosRankSum=3.091;SOR=0.991	GT:AD:DP:GQ:PL	0/1:70,58:128:99:2146,0,2553
1	26392929	rs41284327	A	C	1583.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.250;ClippingRankSum=-1.353;DB;DP=83;FS=0.596;MQ=59.93;MQRankSum=0.663;QD=17.79;ReadPosRankSum=1.602;SOR=0.791	GT:AD:DP:GQ:PL	0/0:83,0:83:99:0,249,3562
1	26485517	rs3748854	G	C	86.60	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.550;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.550;QD=14.43;ReadPosRankSum=-0.550;SOR=0.446	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,43
1	26487940	rs3748856	A	G	8542.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.503;DB;DP=154;FS=1.741;MQ=60.00;MQRankSum=0.694;QD=28.96;ReadPosRankSum=-0.547;SOR=0.705	GT:AD:DP:GQ:PL	0/0:153,1:154:99:0,453,6542
1	26488019	rs3748857	G	A	8562.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;ClippingRankSum=-0.772;DB;DP=135;FS=3.436;MQ=60.00;MQRankSum=1.219;QD=29.33;ReadPosRankSum=1.997;SOR=0.989	GT:AD:DP:GQ:PL	1/1:0,135:135:99:5845,406,0
1	26496455	rs2232648	C	T	3038.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.413;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=1.066;QD=26.43;ReadPosRankSum=1.462;SOR=0.739	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,125,1731
1	26496651	rs7087	T	C	2638.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.016;ClippingRankSum=-0.336;DB;DP=41;FS=0.664;MQ=60.00;MQRankSum=-1.256;QD=25.87;ReadPosRankSum=1.728;SOR=0.580	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1690,122,0
1	26496870	rs2232654	A	G	4637.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;ClippingRankSum=-0.704;DB;DP=72;FS=6.281;MQ=60.00;MQRankSum=0.697;QD=31.55;ReadPosRankSum=-0.187;SOR=0.350	GT:AD:DP:GQ:PL	1/1:0,72:72:99:3037,216,0
1	26497340	rs79266459	A	C	1923.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;ClippingRankSum=1.299;DB;DP=17;FS=0.000;MQ=60.00;MQRankSum=-0.217;QD=32.06;ReadPosRankSum=0.505;SOR=6.358	GT:AD:DP:GQ:PL	1/1:0,17:17:51:699,51,0
1	26504196	rs2783707	C	G	3892.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.024;ClippingRankSum=-1.236;DB;DP=56;FS=2.928;MQ=60.00;MQRankSum=-1.609;QD=30.65;ReadPosRankSum=1.372;SOR=0.183	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2454,169,0
1	26506753	rs1889737	A	G	1577.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.486;DB;DP=18;FS=2.107;MQ=60.00;MQRankSum=0.335;QD=26.30;ReadPosRankSum=0.128;SOR=0.338	GT:AD:DP:GQ:PL	1/1:0,18:18:54:775,54,0
1	26506790	rs1889738	A	G	2089.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.492;ClippingRankSum=-0.730;DB;DP=28;FS=0.000;MQ=60.00;MQRankSum=-0.287;QD=27.87;ReadPosRankSum=1.265;SOR=0.562	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1171,84,0
1	26508293	rs3819033	G	A	5627.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.415;ClippingRankSum=-0.495;DB;DP=88;FS=4.274;MQ=60.00;MQRankSum=0.038;QD=28.14;ReadPosRankSum=2.023;SOR=1.038	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3687,263,0
1	26508480	rs2275945	T	C	5388.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.105;ClippingRankSum=2.301;DB;DP=83;FS=1.092;MQ=60.00;MQRankSum=-0.336;QD=28.36;ReadPosRankSum=0.722;SOR=0.970	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3459,249,0
1	26510439	rs12733981	G	A	311.75	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.298;ClippingRankSum=1.002;DB;DP=4;FS=9.249;MQ=60.00;MQRankSum=1.827;QD=28.34;ReadPosRankSum=1.002;SOR=1.155	GT:AD:DP:GQ:PL	0/0:4,0:4:12:0,12,158
1	26511700	rs2783680	A	G	11703.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;FS=0.000;MQ=60.00;QD=30.29;SOR=1.251	GT:AD:DP:GQ:PL	1/1:0,81:81:99:3488,244,0
1	26514111	.	CT	C	379.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=-0.230;DP=20;FS=0.000;MQ=59.87;MQRankSum=1.151;QD=2.79;ReadPosRankSum=1.151;SOR=0.379	GT:AD:DP:GQ:PL	0/1:5,15:20:25:178,0,25
1	26515529	rs141225811	ACCAGACT	A	4360.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.000;MQ=57.99;QD=26.35;SOR=2.400	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1568,106,0
1	26524706	rs9970046	A	G	8686.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0.489;DB;DP=130;FS=4.051;MQ=60.00;MQRankSum=-0.001;QD=29.95;ReadPosRankSum=1.707;SOR=0.725	GT:AD:DP:GQ:PL	0/0:129,1:130:99:0,351,5410
1	26527163	rs11247870	C	A	1698.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.266;ClippingRankSum=-1.711;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=0.028;QD=29.81;ReadPosRankSum=-0.028;SOR=1.118	GT:AD:DP:GQ:PL	0/0:33,1:34:92:0,92,1343
1	26527783	rs6703730	G	A	3935.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.642;ClippingRankSum=-0.386;DB;DP=68;FS=1.833;MQ=60.00;MQRankSum=-0.386;QD=30.05;ReadPosRankSum=2.200;SOR=0.568	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,204,2842
1	26528181	.	C	CTT	194.21	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.800;ClippingRankSum=1.467;DP=11;FS=0.000;MQ=60.12;MQRankSum=0.933;QD=7.77;ReadPosRankSum=0.667;SOR=0.307	GT:AD:DP:GQ:PL	0/0:11,0:11:32:0,32,263
1	26529121	rs6691747	G	C	3318.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.408;ClippingRankSum=0.034;DB;DP=59;FS=2.173;MQ=60.00;MQRankSum=-0.985;QD=28.37;ReadPosRankSum=-0.067;SOR=0.309	GT:AD:DP:GQ:PL	0/0:59,0:59:99:0,177,2515
1	26570482	rs58751883	CAAAAAAAAAAA	C	862.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.300;ClippingRankSum=-0.419;DB;DP=6;FS=0.000;MQ=59.63;MQRankSum=-0.180;QD=25.37;ReadPosRankSum=-0.539;SOR=2.400	GT:AD:DP:GQ:PL	1/1:0,6:6:19:272,19,0
1	26582091	rs3795686	G	A	16740.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=-0.205;DB;DP=192;FS=1.820;MQ=60.00;MQRankSum=1.321;QD=24.40;ReadPosRankSum=2.764;SOR=0.536	GT:AD:DP:GQ:PL	0/1:100,92:192:99:3361,0,3681
1	26583998	rs4659417	T	C	2385.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=1.001;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=0.048;QD=22.08;ReadPosRankSum=0.632;SOR=1.179	GT:AD:DP:GQ:PL	0/1:14,18:32:99:653,0,493
1	26597435	rs4659419	G	A	7782.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.423;DB;DP=86;FS=5.808;MQ=60.00;MQRankSum=-0.273;QD=26.47;ReadPosRankSum=-1.060;SOR=1.022	GT:AD:DP:GQ:PL	0/1:49,37:86:99:1313,0,1802
1	26597673	rs11247894	G	A	3973.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.232;DB;DP=54;FS=0.000;MQ=60.00;MQRankSum=0.422;QD=24.08;ReadPosRankSum=1.963;SOR=0.779	GT:AD:DP:GQ:PL	0/1:24,30:54:99:1090,0,849
1	26601385	rs3795685	G	A	5942.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.981;DB;DP=71;FS=0.000;MQ=60.00;MQRankSum=-0.494;QD=25.72;ReadPosRankSum=0.529;SOR=0.735	GT:AD:DP:GQ:PL	0/1:41,30:71:99:1105,0,1518
1	26601570	rs11577318	A	G	3090.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.639;ClippingRankSum=1.706;DB;DP=73;FS=0.497;MQ=60.00;MQRankSum=-0.108;QD=17.66;ReadPosRankSum=1.068;SOR=0.736	GT:AD:DP:GQ:PL	0/1:37,36:73:99:1326,0,1380
1	26608649	rs12750420	G	A	4225.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=1.356;DB;DP=60;FS=7.111;MQ=60.00;MQRankSum=-1.867;QD=24.14;ReadPosRankSum=0.880;SOR=0.323	GT:AD:DP:GQ:PL	0/1:32,28:60:99:1014,0,1160
1	26608782	rs34209692	C	T	7335.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.673;ClippingRankSum=1.171;DB;DP=106;FS=9.266;MQ=61.02;MQRankSum=0.677;QD=22.85;ReadPosRankSum=-1.774;SOR=0.351	GT:AD:DP:GQ:PL	0/1:55,51:106:99:1856,0,2084
1	26608814	rs6672357	A	G	5487.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.503;DB;DP=94;FS=2.285;MQ=61.24;MQRankSum=2.523;QD=18.05;ReadPosRankSum=1.303;SOR=0.848	GT:AD:DP:GQ:PL	0/1:64,30:94:99:1127,0,2635
1	26608819	rs66614970	AGGGACTGGGGCCGGGACCGGGACC	A	1492.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=-0.222;DB;DP=80;FS=0.000;MQ=61.12;MQRankSum=-2.992;QD=6.27;ReadPosRankSum=0.828;SOR=0.641	GT:AD:DP:GQ:PL	0/1:55,25:80:99:850,0,2106
1	26608825	.	TGGGGCCG	T	6316.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=-1.072;DP=100;FS=3.698;MQ=61.14;MQRankSum=1.790;QD=19.03;ReadPosRankSum=2.844;SOR=0.943	GT:AD:DP:GQ:PL	0/1:63,37:100:99:1255,0,2520
1	26608835	.	ACCGGGACCGGGACTGGG	A	6252.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=-0.772;DP=107;FS=8.046;MQ=61.08;MQRankSum=1.655;QD=18.45;ReadPosRankSum=1.349;SOR=1.133	GT:AD:DP:GQ:PL	0/1:71,36:107:99:1234,0,2837
1	26609259	rs7522905	C	T	15157.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.192;ClippingRankSum=0.604;DB;DP=174;FS=1.170;MQ=60.00;MQRankSum=-0.151;QD=26.00;ReadPosRankSum=0.347;SOR=0.586	GT:AD:DP:GQ:PL	0/1:84,90:174:99:3238,0,3026
1	26609307	rs6598952	G	T	11860.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.084;DB;DP=151;FS=1.177;MQ=60.00;MQRankSum=-0.405;QD=24.66;ReadPosRankSum=1.448;SOR=0.832	GT:AD:DP:GQ:PL	0/1:68,83:151:99:3009,0,2376
1	26610891	rs4332350	A	C	6926.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;ClippingRankSum=0.668;DB;DP=98;FS=13.237;MQ=60.00;MQRankSum=1.216;QD=22.93;ReadPosRankSum=0.992;SOR=1.316	GT:AD:DP:GQ:PL	0/1:48,50:98:99:1897,0,1836
1	26612042	rs11247898	A	G	3185.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=2.398;DB;DP=44;FS=7.543;MQ=60.00;MQRankSum=-1.641;QD=23.42;ReadPosRankSum=0.356;SOR=0.300	GT:AD:DP:GQ:PL	0/1:22,22:44:99:748,0,778
1	26620846	rs3832184	C	CA	3802.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=1.204;DB;DP=57;FS=3.399;MQ=60.17;MQRankSum=0.721;QD=20.01;ReadPosRankSum=1.853;SOR=0.374	GT:AD:DP:GQ:PL	0/1:37,20:57:99:614,0,1275
1	26627478	rs2276712	T	C	11611.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.604;DB;DP=158;FS=0.546;MQ=60.00;MQRankSum=-0.322;QD=23.84;ReadPosRankSum=3.058;SOR=0.771	GT:AD:DP:GQ:PL	0/1:72,86:158:99:3112,0,2582
1	26629465	rs11803933	G	C	3326.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=1.235;DB;DP=45;FS=1.484;MQ=60.00;MQRankSum=1.235;QD=24.28;ReadPosRankSum=1.178;SOR=1.288	GT:AD:DP:GQ:PL	0/1:25,20:45:99:746,0,923
1	26646611	rs111668601	TA	T	42.21	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=3.139;ClippingRankSum=0.130;DB;DP=20;FS=3.289;MQ=60.28;MQRankSum=-0.415;QD=0.90;ReadPosRankSum=-0.079;SOR=0.291	GT:AD:DP:GQ:PL	0/0:19,1:20:48:0,48,421
1	26646726	rs1071849	A	G	7997.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=2.374;DB;DP=101;FS=7.183;MQ=59.95;MQRankSum=0.469;QD=24.46;ReadPosRankSum=-0.150;SOR=0.426	GT:AD:DP:GQ:PL	0/1:47,54:101:99:2097,0,3722
1	26646730	rs17645	A	G	7812.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.569;DB;DP=95;FS=5.770;MQ=59.95;MQRankSum=-0.956;QD=25.45;ReadPosRankSum=1.366;SOR=0.439	GT:AD:DP:GQ:PL	0/1:46,49:95:99:2024,0,3728
1	26648328	rs12568163	G	A	2318.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.579;DB;DP=54;FS=2.785;MQ=60.00;MQRankSum=-0.041;QD=19.81;ReadPosRankSum=1.674;SOR=1.508	GT:AD:DP:GQ:PL	0/1:22,32:54:99:1183,0,804
1	26648551	rs11247913	G	C	11876.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.202;DB;DP=154;FS=6.224;MQ=60.00;MQRankSum=-1.121;QD=23.90;ReadPosRankSum=0.106;SOR=1.127	GT:AD:DP:GQ:PL	0/1:86,68:154:99:2461,0,3154
1	26654937	rs11589684	G	C	6382.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;ClippingRankSum=2.002;DB;DP=75;FS=3.249;MQ=60.00;MQRankSum=0.496;QD=24.45;ReadPosRankSum=2.045;SOR=0.455	GT:AD:DP:GQ:PL	0/1:33,42:75:99:1552,0,1193
1	26662774	rs7517559	C	T	9560.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=-1.382;DB;DP=109;FS=0.000;MQ=60.00;MQRankSum=-1.110;QD=26.05;ReadPosRankSum=2.072;SOR=0.687	GT:AD:DP:GQ:PL	0/1:52,57:109:99:2163,0,1828
1	26662904	rs72649360	C	T	12917.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.621;ClippingRankSum=-0.465;DB;DP=139;FS=2.696;MQ=60.00;MQRankSum=1.404;QD=26.97;ReadPosRankSum=2.684;SOR=0.963	GT:AD:DP:GQ:PL	0/1:64,75:139:99:2769,0,2317
1	26664219	rs4072445	T	C	3978.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=-0.424;DB;DP=54;FS=0.742;MQ=60.00;MQRankSum=-0.966;QD=22.73;ReadPosRankSum=0.415;SOR=0.805	GT:AD:DP:GQ:PL	0/1:27,27:54:99:913,0,959
1	26670401	rs41285435	G	A	3926.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;ClippingRankSum=-0.255;DB;DP=92;FS=5.268;MQ=60.00;MQRankSum=-1.003;QD=17.37;ReadPosRankSum=0.659;SOR=1.009	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1570,0,1789
1	26670444	rs36024412	G	T	9451.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.818;DB;DP=104;FS=3.903;MQ=60.00;MQRankSum=-1.131;QD=24.87;ReadPosRankSum=0.568;SOR=0.498	GT:AD:DP:GQ:PL	0/1:50,54:104:99:1964,0,1812
1	26670609	rs34370465	C	T	13054.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=-0.359;DB;DP=152;FS=1.823;MQ=60.08;MQRankSum=0.068;QD=24.87;ReadPosRankSum=-0.052;SOR=0.534	GT:AD:DP:GQ:PL	0/1:80,72:152:99:2619,0,3064
1	26670650	rs199784730	T	TTCC	5771.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=-0.475;DB;DP=105;FS=0.810;MQ=60.09;MQRankSum=1.209;QD=16.30;ReadPosRankSum=-1.681;SOR=0.763	GT:AD:DP:GQ:PL	0/1:51,54:105:99:2179,0,1974
1	26671522	.	GAAATGAGGCATCA	G	4603.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=-0.519;DP=171;FS=4.189;MQ=57.64;MQRankSum=-8.905;QD=6.90;ReadPosRankSum=3.275;SOR=0.954	GT:AD:DP:GQ:PL	0/1:134,37:171:99:734,0,5368
1	26671538	.	AGCAC	A	4954.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.774;DP=167;FS=7.121;MQ=57.62;MQRankSum=-6.161;QD=7.48;ReadPosRankSum=6.508;SOR=0.864	GT:AD:DP:GQ:PL	0/1:129,38:167:99:764,0,5548
1	26671544	.	GGGGCCCTTCACGACCTCTTTCCAGGTGGGGAACA	G	4820.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=2.101;DP=188;FS=4.240;MQ=57.79;MQRankSum=-4.811;QD=6.73;ReadPosRankSum=5.522;SOR=0.819	GT:AD:DP:GQ:PL	0/1:151,37:188:99:706,0,6209
1	26680263	rs4454539	A	C	184.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=60.00;QD=34.58;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,1:1:3:36,3,0
1	26688524	rs41285437	C	T	1950.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.072;DB;DP=150;FS=4.190;MQ=60.00;MQRankSum=-3.028;QD=14.03;ReadPosRankSum=0.064;SOR=1.127	GT:AD:DP:GQ:PL	0/0:150,0:150:99:0,450,6357
1	26689220	rs12030833	A	G	634.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.546;DB;DP=12;FS=0.000;MQ=60.00;MQRankSum=-0.826;QD=19.22;ReadPosRankSum=0.445;SOR=0.866	GT:AD:DP:GQ:PL	0/1:5,7:12:99:243,0,175
1	26689659	rs11247932	G	A	5138.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.406;DB;DP=46;FS=0.000;MQ=60.00;MQRankSum=-0.117;QD=26.08;ReadPosRankSum=-0.865;SOR=0.681	GT:AD:DP:GQ:PL	0/1:22,24:46:99:898,0,821
1	26691174	rs11247933	C	A	14314.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=-0.650;DB;DP=186;FS=5.322;MQ=60.00;MQRankSum=-0.270;QD=25.11;ReadPosRankSum=1.576;SOR=0.685	GT:AD:DP:GQ:PL	0/1:89,97:186:99:3438,0,3201
1	26694245	rs10794531	T	C	1524.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=-0.177;DB;DP=47;FS=7.068;MQ=60.00;MQRankSum=0.154;QD=13.98;ReadPosRankSum=-0.057;SOR=1.044	GT:AD:DP:GQ:PL	0/1:24,23:47:99:886,0,1661
1	26694260	rs10794532	T	C	1435.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.381;DB;DP=46;FS=16.042;MQ=60.00;MQRankSum=-1.365;QD=13.29;ReadPosRankSum=2.670;SOR=0.938	GT:AD:DP:GQ:PL	0/1:25,21:46:99:832,0,1784
1	26698884	rs11247936	T	C	4278.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.863;ClippingRankSum=-0.870;DB;DP=101;FS=6.708;MQ=60.00;MQRankSum=0.021;QD=18.13;ReadPosRankSum=2.164;SOR=1.054	GT:AD:DP:GQ:PL	0/1:50,51:101:99:1898,0,1808
1	26698938	rs6703878	A	G	4925.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.714;DB;DP=99;FS=21.422;MQ=60.00;MQRankSum=-1.924;QD=20.10;ReadPosRankSum=-0.070;SOR=1.551	GT:AD:DP:GQ:PL	0/1:45,54:99:99:2009,0,1595
1	26699103	rs11584185	T	C	3828.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;ClippingRankSum=-1.287;DB;DP=81;FS=7.414;MQ=60.00;MQRankSum=-0.541;QD=20.36;ReadPosRankSum=2.906;SOR=1.757	GT:AD:DP:GQ:PL	0/1:36,45:81:99:1693,0,1283
1	26699157	rs11247937	T	C	2166.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.157;DB;DP=52;FS=8.138;MQ=57.80;MQRankSum=-0.835;QD=19.17;ReadPosRankSum=0.503;SOR=0.044	GT:AD:DP:GQ:PL	0/1:22,30:52:99:1023,0,704
1	26700631	rs12079255	A	G	1992.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=-0.046;DB;DP=42;FS=1.398;MQ=60.00;MQRankSum=-0.556;QD=15.56;ReadPosRankSum=0.924;SOR=0.547	GT:AD:DP:GQ:PL	0/1:21,21:42:99:717,0,711
1	26700795	rs7520030	T	C	8327.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MQ=60.00;QD=30.97;SOR=1.871	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2045,155,0
1	26752992	rs4659441	T	C	13252.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.000;MQ=56.72;QD=24.56;SOR=5.981	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3504,246,0
1	26756174	rs11247957	G	A	167.57	PASS	AC=0;AF=0.00;AN=0;BaseQRankSum=-0.573;ClippingRankSum=-0.248;DB;DP=9;FS=13.222;MQ=59.14;MQRankSum=-0.248;QD=18.62;ReadPosRankSum=0.573;SOR=2.204	GT	./.
1	26756209	rs6697410	G	T	248.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MQ=59.72;QD=32.31;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
1	26758748	rs3828083	G	A	463.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MQ=60.00;QD=34.01;SOR=1.802	GT:AD:DP:GQ:PL	1/1:0,4:4:12:179,12,0
1	26758773	rs6656196	G	A	185.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.956;ClippingRankSum=-0.956;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=-0.956;QD=30.43;ReadPosRankSum=1.920;SOR=0.105	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
1	26769543	rs113377361	C	CTTTTTT	4807.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.000;MQ=60.27;QD=28.72;SOR=9.044	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1481,102,0
1	26786627	rs3816539	G	A	2675.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.771;DB;DP=37;FS=5.554;MQ=60.00;MQRankSum=-0.698;QD=23.89;ReadPosRankSum=1.922;SOR=1.090	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1610,111,0
1	26797654	rs1055323	C	T	102.55	PASS	AC=0;AF=0.00;AN=0;DB;DP=3;FS=0.000;MQ=60.00;QD=34.18;SOR=1.179	GT	./.
1	26797905	rs11590999	G	A	92.04	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.406;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.406;QD=23.01;ReadPosRankSum=1.537;SOR=0.693	GT:AD:DP:GQ:PL	0/0:2,0:2:6:0,6,88
1	26801229	rs72651510	C	A	4804.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.422;DB;DP=75;FS=0.511;MQ=60.00;MQRankSum=-0.239;QD=28.10;ReadPosRankSum=0.311;SOR=0.655	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,224,3130
1	26801737	.	C	CT	11.42	INDEL_LowQualityDepth;LowQual	AC=0;AF=0.00;AN=2;BaseQRankSum=0.693;ClippingRankSum=-0.147;DP=15;FS=0.000;MQ=53.87;MQRankSum=-3.298;QD=0.82;ReadPosRankSum=-2.373;SOR=0.117	GT:AD:DP:GQ:PL	0/0:14,1:15:31:0,31,418
1	26856462	rs11800553	T	G	1344.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MQ=60.00;QD=27.96;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,6:6:18:269,18,0
1	26869610	rs921893	G	A	13390.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;FS=0.000;MQ=60.00;QD=25.38;SOR=4.058	GT:AD:DP:GQ:PL	1/1:0,95:95:99:4085,285,0
1	26870730	rs1466286	C	G	6449.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.380;DB;DP=96;FS=9.575;MQ=60.00;MQRankSum=1.038;QD=27.33;ReadPosRankSum=-1.312;SOR=0.816	GT:AD:DP:GQ:PL	1/1:0,96:96:99:4066,274,0
1	26872554	rs12723936	A	G	684.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=-1.369;DB;DP=46;FS=14.240;MQ=60.00;MQRankSum=0.346;QD=14.87;ReadPosRankSum=-0.971;SOR=2.083	GT:AD:DP:GQ:PL	0/1:25,21:46:99:715,0,866
1	26879376	rs7543005	T	C	1100.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.319;DB;DP=55;FS=0.000;MQ=60.00;MQRankSum=-1.870;QD=20.00;ReadPosRankSum=-0.554;SOR=0.712	GT:AD:DP:GQ:PL	0/1:24,31:55:99:1131,0,788
1	26879792	rs4970489	T	C	6788.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MQ=60.00;QD=30.14;SOR=4.589	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2137,150,0
1	26879920	rs4970490	T	C	10302.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MQ=60.00;QD=27.26;SOR=2.150	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2960,208,0
1	26880288	rs2290589	C	T	635.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.368;DB;DP=33;FS=0.000;MQ=60.00;MQRankSum=1.093;QD=19.25;ReadPosRankSum=-0.123;SOR=0.978	GT:AD:DP:GQ:PL	0/1:15,18:33:99:666,0,547
1	26880989	rs873151	T	C	1557.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=-0.033;DB;DP=107;FS=0.000;MQ=60.00;MQRankSum=1.792;QD=14.55;ReadPosRankSum=0.133;SOR=0.650	GT:AD:DP:GQ:PL	0/1:61,46:107:99:1588,0,2312
1	26881565	rs67600391	AG	A	3671.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=-1.271;DB;DP=37;FS=1.799;MQ=60.08;MQRankSum=0.161;QD=27.19;ReadPosRankSum=3.251;SOR=1.392	GT:AD:DP:GQ:PL	0/1:17,20:37:99:577,0,458
1	26881806	rs897641	C	A	2024.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.426;ClippingRankSum=1.518;DB;DP=98;FS=4.363;MQ=59.95;MQRankSum=0.517;QD=20.65;ReadPosRankSum=-1.354;SOR=1.026	GT:AD:DP:GQ:PL	0/1:44,54:98:99:2055,0,1629
1	26882136	rs41286647	G	A	630.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.135;ClippingRankSum=-0.676;DB;DP=74;FS=3.206;MQ=60.00;MQRankSum=0.323;QD=11.67;ReadPosRankSum=-0.002;SOR=1.201	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,222,3187
1	26887150	rs34062688	A	G	1292.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;ClippingRankSum=1.166;DB;DP=65;FS=1.720;MQ=60.00;MQRankSum=0.990;QD=19.58;ReadPosRankSum=0.920;SOR=0.311	GT:AD:DP:GQ:PL	0/1:30,35:65:99:1323,0,1101
1	26887592	rs1064196	T	C	1740.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=1.156;DB;DP=93;FS=3.766;MQ=60.00;MQRankSum=-1.370;QD=18.51;ReadPosRankSum=-3.151;SOR=1.025	GT:AD:DP:GQ:PL	0/1:45,48:93:99:1771,0,1673
1	26898142	rs188158	A	G	2397.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=1.432;DB;DP=113;FS=5.872;MQ=60.00;MQRankSum=-0.942;QD=21.21;ReadPosRankSum=1.469;SOR=0.411	GT:AD:DP:GQ:PL	0/1:49,64:113:99:2428,0,1736
1	26898956	rs282176	T	C	1279.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=1.034;DB;DP=67;FS=14.787;MQ=60.00;MQRankSum=0.344;QD=19.09;ReadPosRankSum=1.596;SOR=2.368	GT:AD:DP:GQ:PL	0/1:31,36:67:99:1310,0,1110
1	26899687	rs282178	C	A	843.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.905;DB;DP=55;FS=6.483;MQ=60.00;MQRankSum=0.801;QD=15.06;ReadPosRankSum=1.919;SOR=1.881	GT:AD:DP:GQ:PL	0/1:31,24:55:99:874,0,1182
1	26900735	rs282179	C	G	10611.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.000;MQ=60.00;QD=32.91;SOR=1.534	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3566,247,0
1	26901090	rs11113	C	T	4008.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MQ=60.00;QD=27.97;SOR=6.847	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1266,87,0
1	27179062	rs10902645	G	T	4181.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.290;ClippingRankSum=-0.295;DB;DP=62;FS=0.000;MQ=60.00;MQRankSum=-1.251;QD=30.09;ReadPosRankSum=2.085;SOR=0.446	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2726,187,0
1	27190821	rs57297594	GGTGT	G	79.81	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.322;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=1.221;QD=8.87;ReadPosRankSum=-1.221;SOR=0.368	GT:AD:DP:GQ:PL	0/0:2,0:2:6:0,6,89
1	27210721	rs3170660	T	C	7409.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.712;DB;DP=58;FS=6.321;MQ=60.00;MQRankSum=-0.297;QD=34.62;ReadPosRankSum=-1.749;SOR=1.345	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2461,174,0
1	27237460	rs200723643	G	GT	1687.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.867;ClippingRankSum=-0.832;DB;DP=31;FS=1.111;MQ=60.00;MQRankSum=-0.560;QD=21.09;ReadPosRankSum=0.318;SOR=0.496	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,3880
1	27237461	.	G	T	1768.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.434;DP=31;FS=1.112;MQ=60.00;MQRankSum=0.486;QD=21.30;ReadPosRankSum=0.358;SOR=0.491	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,3880
1	27237463	rs201740546	AGG	A	1753.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.030;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=-0.941;QD=20.15;ReadPosRankSum=-0.172;SOR=0.608	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,3880
1	27238150	rs7504	A	G	1918.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.257;ClippingRankSum=-0.614;DB;DP=28;FS=6.148;MQ=60.00;MQRankSum=0.086;QD=28.64;ReadPosRankSum=1.627;SOR=0.061	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,1195
1	27278521	rs3010110	G	A	4551.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.794;DB;DP=121;FS=13.278;MQ=60.00;MQRankSum=0.978;QD=18.50;ReadPosRankSum=2.757;SOR=0.778	GT:AD:DP:GQ:PL	0/0:120,1:121:99:0,318,5010
1	27278553	rs3010109	G	A	4841.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.647;ClippingRankSum=-0.206;DB;DP=111;FS=9.113;MQ=60.00;MQRankSum=-0.739;QD=20.69;ReadPosRankSum=1.718;SOR=0.888	GT:AD:DP:GQ:PL	0/0:110,1:111:99:0,323,4696
1	27320356	rs6689941	T	C	1680.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.000;MQ=60.00;QD=28.05;SOR=1.501	GT:AD:DP:GQ:PL	1/1:0,15:15:45:649,45,0
1	27339103	rs4970471	G	T	2089.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.611;ClippingRankSum=-1.409;DB;DP=37;FS=1.301;MQ=60.00;MQRankSum=-0.204;QD=32.15;ReadPosRankSum=1.506;SOR=1.031	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1594,111,0
1	27425097	rs67011529	CTGG	C	295.52	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.289;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.289;QD=26.87;ReadPosRankSum=0.536;SOR=0.446	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,57
1	27426796	rs4266911	T	C	9739.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.000;MQ=60.00;QD=32.33;SOR=2.093	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2833,199,0
1	27427041	rs4418629	T	C	13366.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;FS=0.000;MQ=59.94;QD=37.12;SOR=1.212	GT:AD:DP:GQ:PL	1/1:0,94:94:99:4057,282,0
1	27428321	rs6598870	T	C	4427.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.014;ClippingRankSum=-0.242;DB;DP=96;FS=0.000;MQ=60.00;MQRankSum=0.697;QD=18.60;ReadPosRankSum=1.946;SOR=0.671	GT:AD:DP:GQ:PL	0/0:96,0:96:99:0,288,4029
1	27435976	rs3738689	C	G	2734.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.570;ClippingRankSum=-1.321;DB;DP=68;FS=10.916;MQ=60.00;MQRankSum=-0.201;QD=19.12;ReadPosRankSum=-0.816;SOR=1.744	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,204,2789
1	27480227	rs6696950	G	A	466.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.307;DB;DP=13;FS=0.000;MQ=60.00;MQRankSum=0.132;QD=17.93;ReadPosRankSum=-0.307;SOR=0.287	GT:AD:DP:GQ:PL	0/0:13,0:13:38:0,38,467
1	27480293	rs6697059	G	C	1027.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0.180;DB;DP=43;FS=0.000;MQ=60.00;MQRankSum=-0.546;QD=15.56;ReadPosRankSum=-1.659;SOR=0.140	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1777
1	27480757	rs34306208	A	G	6042.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.479;ClippingRankSum=1.451;DB;DP=114;FS=0.000;MQ=60.00;MQRankSum=-0.198;QD=17.77;ReadPosRankSum=1.684;SOR=0.688	GT:AD:DP:GQ:PL	0/0:114,0:114:99:0,343,4929
1	27561359	rs7514133	T	C	106.42	PASS	AC=0;AF=0.00;AN=0;DB;DP=3;FS=0.000;MQ=60.00;QD=32.31;SOR=1.179	GT	./.
1	27609980	rs6670124	T	G	11886.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.000;MQ=60.00;QD=31.43;SOR=2.189	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2986,212,0
1	27610069	rs10902656	C	T	8442.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.00;QD=26.60;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1860,134,0
1	27635249	rs4463695	T	G	154.02	PASS	AC=0;AF=0.00;AN=0;DB;DP=4;FS=0.000;MQ=60.00;QD=28.09;SOR=1.609	GT	./.
1	27659965	rs6687283	C	T	3479.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=60.00;QD=29.91;SOR=8.885	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1602,113,0
1	27659989	rs35397588	G	A	409.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=-0.204;DB;DP=29;FS=0.000;MQ=60.00;MQRankSum=0.098;QD=14.11;ReadPosRankSum=1.564;SOR=0.044	GT:AD:DP:GQ:PL	0/1:17,12:29:99:440,0,603
1	27660340	rs12758154	T	C	356.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;ClippingRankSum=-0.894;DB;DP=37;FS=0.000;MQ=60.00;MQRankSum=0.687;QD=9.63;ReadPosRankSum=-1.280;SOR=0.060	GT:AD:DP:GQ:PL	0/1:25,12:37:99:387,0,853
1	27660568	rs35771571	G	A	2452.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=-0.831;DB;DP=157;FS=0.000;MQ=60.00;MQRankSum=0.480;QD=15.42;ReadPosRankSum=0.674;SOR=0.618	GT:AD:DP:GQ:PL	0/1:89,68:157:99:2483,0,3326
1	27661037	rs12565684	T	C	1460.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.260;ClippingRankSum=0.203;DB;DP=62;FS=11.675;MQ=60.00;MQRankSum=-0.547;QD=23.55;ReadPosRankSum=1.944;SOR=1.620	GT:AD:DP:GQ:PL	0/1:23,39:62:99:1491,0,821
1	27661755	rs71294466	T	TGTA	537.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.096;DB;DP=29;FS=4.883;MQ=60.00;MQRankSum=0.520;QD=18.52;ReadPosRankSum=0.456;SOR=0.045	GT:AD:DP:GQ:PL	0/1:15,14:29:99:577,0,773
1	27676026	rs199866369	G	A	914.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;ClippingRankSum=-0.371;DB;DP=44;FS=0.000;MQ=60.00;MQRankSum=0.988;QD=20.78;ReadPosRankSum=0.610;SOR=0.506	GT:AD:DP:GQ:PL	0/1:18,26:44:99:945,0,663
1	27676125	rs12122380	C	T	2902.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.145;ClippingRankSum=0.404;DB;DP=70;FS=7.203;MQ=60.00;MQRankSum=0.267;QD=15.95;ReadPosRankSum=1.781;SOR=0.384	GT:AD:DP:GQ:PL	0/0:70,0:70:99:0,210,3014
1	27676289	.	G	T	1398.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.076;DP=79;FS=4.213;MQ=59.93;MQRankSum=0.023;QD=17.48;ReadPosRankSum=2.792;SOR=0.426	GT:AD:DP:GQ:PL	0/1:39,40:79:99:1429,0,1411
1	27676925	rs6702341	G	A	3702.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=-2.159;DB;DP=190;FS=1.839;MQ=59.99;MQRankSum=0.129;QD=19.38;ReadPosRankSum=4.012;SOR=0.914	GT:AD:DP:GQ:PL	0/1:89,101:190:99:3733,0,3185
1	27677233	rs41291094	A	G	1771.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.069;DB;DP=74;FS=0.604;MQ=60.00;MQRankSum=-0.402;QD=14.88;ReadPosRankSum=-0.226;SOR=0.597	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,223,3218
1	27679692	rs11247639	A	G	3594.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.343;ClippingRankSum=-0.983;DB;DP=44;FS=13.167;MQ=60.00;MQRankSum=0.541;QD=25.31;ReadPosRankSum=1.661;SOR=3.279	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1922,132,0
1	27679797	rs3813795	A	G	6734.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.076;ClippingRankSum=1.352;DB;DP=77;FS=10.716;MQ=60.00;MQRankSum=-0.179;QD=25.51;ReadPosRankSum=1.614;SOR=1.284	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3323,232,0
1	27679954	rs1128918	G	A	1264.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=1.095;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=-0.327;QD=22.57;ReadPosRankSum=1.449;SOR=0.567	GT:AD:DP:GQ:PL	0/1:22,34:56:99:1295,0,712
1	27680292	rs8533	A	G	3879.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;ClippingRankSum=1.110;DB;DP=49;FS=0.638;MQ=60.00;MQRankSum=-0.120;QD=24.87;ReadPosRankSum=2.119;SOR=0.610	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2061,147,0
1	27681534	rs35448284	A	G	80.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=-0.191;DB;DP=6;FS=0.000;MQ=55.82;MQRankSum=0.670;QD=13.36;ReadPosRankSum=0.096;SOR=0.307	GT:AD:DP:GQ:PL	0/1:3,3:6:99:111,0,117
1	27681538	rs6690107	T	C	491.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;ClippingRankSum=-0.850;DB;DP=6;FS=1.918;MQ=56.01;MQRankSum=-0.472;QD=21.39;ReadPosRankSum=-0.220;SOR=1.371	GT:AD:DP:GQ:PL	0/1:3,3:6:99:114,0,117
1	27682126	rs12742921	T	C	920.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.506;DB;DP=60;FS=0.772;MQ=60.00;MQRankSum=-0.152;QD=15.34;ReadPosRankSum=1.470;SOR=0.806	GT:AD:DP:GQ:PL	0/1:32,28:60:99:951,0,1224
1	27682440	.	T	TG	4978.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0.335;DP=91;FS=3.171;MQ=59.91;MQRankSum=0.152;QD=16.27;ReadPosRankSum=0.102;SOR=0.878	GT:AD:DP:GQ:PL	0/1:40,51:91:99:1854,0,1339
1	27682481	rs12569127	G	A	5562.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.416;DB;DP=81;FS=0.458;MQ=60.08;MQRankSum=0.252;QD=20.23;ReadPosRankSum=-0.410;SOR=0.742	GT:AD:DP:GQ:PL	0/1:31,50:81:99:1922,0,1037
1	27686063	rs7521552	G	C	11129.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;FS=0.000;MQ=60.00;QD=33.23;SOR=1.288	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2606,188,0
1	27687366	rs35733093	C	G	1419.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=1.304;DB;DP=76;FS=0.000;MQ=60.00;MQRankSum=-0.757;QD=18.67;ReadPosRankSum=0.986;SOR=0.654	GT:AD:DP:GQ:PL	0/1:36,40:76:99:1450,0,1280
1	27687466	rs35659744	G	T	5070.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.924;DB;DP=74;FS=1.053;MQ=60.00;MQRankSum=-0.372;QD=19.81;ReadPosRankSum=1.441;SOR=0.783	GT:AD:DP:GQ:PL	0/1:46,28:74:99:993,0,1737
1	27688633	rs1138294	G	A	2078.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=-0.337;DB;DP=111;FS=2.440;MQ=60.00;MQRankSum=1.367;QD=18.55;ReadPosRankSum=3.021;SOR=0.535	GT:AD:DP:GQ:PL	0/1:53,58:111:99:2109,0,1960
1	27689763	rs4525067	C	T	4108.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.889;DB;DP=46;FS=0.000;MQ=60.00;MQRankSum=0.429;QD=21.18;ReadPosRankSum=-0.742;SOR=0.656	GT:AD:DP:GQ:PL	0/1:23,23:46:99:803,0,754
1	27690359	rs4307592	T	C	1586.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=1.026;DB;DP=27;FS=1.239;MQ=60.00;MQRankSum=0.174;QD=15.71;ReadPosRankSum=0.113;SOR=0.896	GT:AD:DP:GQ:PL	0/1:16,11:27:99:385,0,605
1	27690644	rs12727507	A	G	6913.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.303;DB;DP=79;FS=7.558;MQ=60.00;MQRankSum=0.675;QD=21.01;ReadPosRankSum=-0.075;SOR=0.424	GT:AD:DP:GQ:PL	0/1:43,36:79:99:1327,0,1638
1	27696011	rs10218730	C	T	14856.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;FS=0.000;MQ=60.00;QD=26.10;SOR=8.915	GT:AD:DP:GQ:PL	1/1:0,98:98:99:4212,295,0
1	27709138	rs79961070	A	G	3363.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=-0.088;DB;DP=43;FS=9.989;MQ=60.00;MQRankSum=-0.511;QD=17.61;ReadPosRankSum=0.582;SOR=0.214	GT:AD:DP:GQ:PL	0/1:20,23:43:99:859,0,661
1	27720353	rs11586015	C	A	2387.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;ClippingRankSum=-0.175;DB;DP=124;FS=4.032;MQ=59.95;MQRankSum=-0.041;QD=19.25;ReadPosRankSum=2.408;SOR=1.168	GT:AD:DP:GQ:PL	0/1:58,66:124:99:2418,0,2116
1	27875363	rs149242867	G	A	2788.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.334;ClippingRankSum=-0.321;DB;DP=134;FS=0.000;MQ=60.02;MQRankSum=-0.762;QD=17.87;ReadPosRankSum=0.834;SOR=0.611	GT:AD:DP:GQ:PL	0/0:134,0:134:99:0,403,5800
1	27875824	rs4908364	C	T	21003.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;FS=0.000;MQ=60.00;QD=28.38;SOR=0.709	GT:AD:DP:GQ:PL	1/1:0,151:151:99:6455,453,0
1	27876482	rs2076457	C	A	9610.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=1.327;DB;DP=122;FS=2.645;MQ=60.00;MQRankSum=1.602;QD=23.85;ReadPosRankSum=1.408;SOR=0.968	GT:AD:DP:GQ:PL	0/1:69,53:122:99:1798,0,2557
1	27944000	rs1292089	T	A	7728.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=-0.598;DB;DP=86;FS=4.865;MQ=60.00;MQRankSum=0.663;QD=33.60;ReadPosRankSum=1.136;SOR=1.666	GT:AD:DP:GQ:PL	0/1:46,40:86:99:1467,0,1685
1	27992800	.	C	CA	216.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.747;DP=2;FS=3.680;MQ=60.51;MQRankSum=-0.747;QD=5.17;ReadPosRankSum=0.747;SOR=1.447	GT:AD:DP:GQ:PL	1/1:0,2:2:5:29,5,0
1	27995077	rs56015130	G	T	7791.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.000;MQ=60.00;QD=27.70;SOR=2.419	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2465,175,0
1	28056766	rs1933886	C	T	59.87	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.736;QD=29.94;ReadPosRankSum=-0.736;SOR=1.179	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,45
1	28086955	rs10902671	C	A	8312.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.854;DB;DP=65;FS=0.730;MQ=60.00;MQRankSum=-0.914;QD=34.35;ReadPosRankSum=-0.414;SOR=0.613	GT:AD:DP:GQ:PL	0/1:30,35:65:99:1225,0,1073
1	28115993	rs72655053	G	C	903.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.678;ClippingRankSum=-0.876;DB;DP=29;FS=2.892;MQ=60.00;MQRankSum=0.468;QD=19.63;ReadPosRankSum=0.487;SOR=0.154	GT:AD:DP:GQ:PL	0/0:29,0:29:87:0,87,1221
1	28157446	rs41284290	T	G	2868.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.871;ClippingRankSum=-1.214;DB;DP=82;FS=5.562;MQ=60.00;MQRankSum=-0.211;QD=16.68;ReadPosRankSum=0.866;SOR=0.434	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1474,0,1464
1	28209305	rs3766398	A	G	11706.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=1.047;DB;DP=109;FS=0.000;MQ=60.00;MQRankSum=-0.534;QD=33.74;ReadPosRankSum=0.211;SOR=0.657	GT:AD:DP:GQ:PL	0/1:60,49:109:99:1690,0,2274
1	28209362	rs3766399	T	C	13165.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;ClippingRankSum=-0.090;DB;DP=114;FS=1.130;MQ=60.00;MQRankSum=0.237;QD=29.29;ReadPosRankSum=0.445;SOR=0.685	GT:AD:DP:GQ:PL	0/1:56,58:114:99:2248,0,3034
1	28209366	rs3766400	A	G	12824.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.228;DB;DP=107;FS=0.547;MQ=60.00;MQRankSum=1.497;QD=34.07;ReadPosRankSum=-0.354;SOR=0.686	GT:AD:DP:GQ:PL	0/1:53,54:107:99:2155,0,2975
1	28223981	rs55902224	TA	T	104.11	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=-0.385;DB;DP=19;FS=0.000;MQ=60.00;MQRankSum=1.449;QD=1.27;ReadPosRankSum=-0.677;SOR=0.381	GT:AD:DP:GQ:PL	0/1:15,4:19:48:48,0,369
1	28223996	rs199876864	G	A	27.43	LowQual;SNP_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.809;ClippingRankSum=0.485;DB;DP=28;FS=9.367;MQ=60.00;MQRankSum=-0.207;QD=0.50;ReadPosRankSum=0.341;SOR=2.560	GT:AD:DP:GQ:PL	0/1:23,5:28:13:13,0,644
1	28261593	rs3737809	T	C	7614.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=-0.176;DB;DP=64;FS=0.872;MQ=60.05;MQRankSum=0.633;QD=27.99;ReadPosRankSum=-0.682;SOR=0.926	GT:AD:DP:GQ:PL	0/1:31,33:64:99:1290,0,1201
1	28261600	rs3737808	A	C	7686.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=1.234;DB;DP=63;FS=4.184;MQ=60.05;MQRankSum=-1.162;QD=32.72;ReadPosRankSum=0.270;SOR=1.171	GT:AD:DP:GQ:PL	0/1:32,31:63:99:1247,0,1240
1	28261658	rs3831926	T	TG	6513.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=-0.592;DB;DP=63;FS=3.628;MQ=60.05;MQRankSum=-0.621;QD=29.88;ReadPosRankSum=-3.185;SOR=0.424	GT:AD:DP:GQ:PL	0/1:35,28:63:99:886,0,1119
1	28261902	rs3737807	C	A	5012.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.283;DB;DP=49;FS=0.000;MQ=60.00;MQRankSum=-0.756;QD=27.00;ReadPosRankSum=1.547;SOR=0.667	GT:AD:DP:GQ:PL	0/1:23,26:49:99:949,0,852
1	28268573	rs10902678	C	T	4955.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.152;DB;DP=40;FS=0.000;MQ=60.00;MQRankSum=0.679;QD=31.93;ReadPosRankSum=1.261;SOR=3.767	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1528,119,0
1	28268706	rs4908341	G	A	5697.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.590;ClippingRankSum=1.808;DB;DP=55;FS=0.744;MQ=60.00;MQRankSum=-0.981;QD=33.71;ReadPosRankSum=-0.599;SOR=0.785	GT:AD:DP:GQ:PL	0/1:30,25:55:99:873,0,1087
1	28268829	.	T	TC	603.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.428;ClippingRankSum=-1.072;DP=47;FS=4.485;MQ=60.42;MQRankSum=0.824;QD=12.31;ReadPosRankSum=1.044;SOR=0.327	GT:AD:DP:GQ:PL	0/1:21,26:47:99:643,0,728
1	28268833	rs11386058	C	CG	4387.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=-1.266;DB;DP=48;FS=4.430;MQ=60.44;MQRankSum=-0.441;QD=29.64;ReadPosRankSum=-0.286;SOR=1.277	GT:AD:DP:GQ:PL	0/1:27,21:48:99:678,0,959
1	28268835	rs76053317	A	C	6458.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MQ=60.38;QD=28.15;SOR=1.660	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2192,150,0
1	28280012	rs11577165	G	C	877.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;ClippingRankSum=0.349;DB;DP=48;FS=0.000;MQ=59.96;MQRankSum=1.753;QD=18.27;ReadPosRankSum=-1.219;SOR=0.144	GT:AD:DP:GQ:PL	0/1:24,24:48:99:908,0,921
1	28282206	rs3813804	C	T	1040.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=-0.451;DB;DP=68;FS=5.459;MQ=60.00;MQRankSum=-1.720;QD=15.30;ReadPosRankSum=1.613;SOR=0.329	GT:AD:DP:GQ:PL	0/1:37,31:68:99:1071,0,1339
1	28282819	rs4908381	T	C	8285.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MQ=60.00;QD=28.24;SOR=3.867	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2290,162,0
1	28285534	rs12402958	T	C	1255.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.000;MQ=60.00;QD=24.14;SOR=3.981	GT:AD:DP:GQ:PL	1/1:0,12:12:36:502,36,0
1	28285632	rs12402686	A	T	451.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MQ=60.00;QD=27.08;SOR=3.442	GT:AD:DP:GQ:PL	1/1:0,6:6:18:268,18,0
1	28290231	rs4373781	C	G	5665.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.000;MQ=60.00;QD=29.55;SOR=3.031	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1705,123,0
1	28293712	rs6673064	G	A	3673.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.251;ClippingRankSum=-0.102;DB;DP=74;FS=0.000;MQ=59.90;MQRankSum=0.538;QD=20.64;ReadPosRankSum=0.444;SOR=0.653	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,223,3221
1	28301217	rs12406483	C	T	3774.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;ClippingRankSum=0.523;DB;DP=61;FS=0.000;MQ=60.00;MQRankSum=-1.140;QD=26.77;ReadPosRankSum=2.885;SOR=0.633	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2627,183,0
1	28303971	rs41284301	A	G	2166.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.943;DB;DP=54;FS=5.847;MQ=60.00;MQRankSum=0.674;QD=20.63;ReadPosRankSum=-0.728;SOR=1.483	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,163,2337
1	28304785	rs72656546	T	C	1759.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.834;ClippingRankSum=-0.155;DB;DP=45;FS=0.000;MQ=60.00;MQRankSum=1.319;QD=19.55;ReadPosRankSum=2.432;SOR=0.255	GT:AD:DP:GQ:PL	0/0:45,0:45:99:0,135,1956
1	28316407	rs72656569	A	T	1076.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.997;ClippingRankSum=-0.362;DB;DP=30;FS=0.000;MQ=60.00;MQRankSum=-1.182;QD=16.82;ReadPosRankSum=-0.402;SOR=0.217	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1292
1	28319867	rs12140716	C	A	2569.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.878;DB;DP=57;FS=2.156;MQ=60.00;MQRankSum=-1.335;QD=18.22;ReadPosRankSum=0.982;SOR=1.016	GT:AD:DP:GQ:PL	0/0:57,0:57:99:0,171,2447
1	28331013	rs12139076	G	A	1089.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.494;ClippingRankSum=-1.709;DB;DP=33;FS=0.000;MQ=60.00;MQRankSum=-0.366;QD=16.50;ReadPosRankSum=1.483;SOR=0.195	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1422
1	28339933	rs6683268	A	T	1443.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.350;ClippingRankSum=-0.820;DB;DP=24;FS=0.000;MQ=60.00;MQRankSum=-1.059;QD=24.47;ReadPosRankSum=1.147;SOR=0.379	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1018,72,0
1	28369213	rs111559121	TA	T	1602.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.471;ClippingRankSum=-0.033;DB;DP=47;FS=0.862;MQ=60.00;MQRankSum=-0.509;QD=13.13;ReadPosRankSum=0.567;SOR=0.865	GT:AD:DP:GQ:PL	0/0:47,0:47:99:0,141,1532
1	28369279	rs2476547	G	A	4681.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;ClippingRankSum=1.814;DB;DP=41;FS=4.586;MQ=60.00;MQRankSum=-1.166;QD=30.47;ReadPosRankSum=-0.700;SOR=2.993	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1773,123,0
1	28369294	rs72658322	T	C	1606.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.326;ClippingRankSum=-1.023;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=0.252;QD=20.59;ReadPosRankSum=0.102;SOR=0.897	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1654
1	28374815	rs7541031	C	T	3994.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.110;ClippingRankSum=-0.385;DB;DP=63;FS=5.639;MQ=60.00;MQRankSum=0.571;QD=24.51;ReadPosRankSum=-0.995;SOR=1.066	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2674,189,0
1	28422847	rs2989472	C	T	18559.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.933;ClippingRankSum=1.565;DB;DP=133;FS=0.785;MQ=54.40;MQRankSum=-1.529;QD=28.81;ReadPosRankSum=3.231;SOR=0.783	GT:AD:DP:GQ:PL	1/1:0,133:133:99:5702,400,0
1	28527011	rs1049504	A	G	3008.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.130;DB;DP=68;FS=0.000;MQ=60.00;MQRankSum=-0.351;QD=15.27;ReadPosRankSum=1.906;SOR=0.680	GT:AD:DP:GQ:PL	0/1:41,27:68:99:974,0,1555
1	28555426	rs567086	G	A	3387.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;ClippingRankSum=-0.992;DB;DP=49;FS=3.191;MQ=60.00;MQRankSum=-0.662;QD=17.29;ReadPosRankSum=0.775;SOR=0.189	GT:AD:DP:GQ:PL	0/1:23,26:49:99:900,0,822
1	28555579	rs3753863	C	A	1295.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.983;ClippingRankSum=-0.793;DB;DP=89;FS=3.287;MQ=60.00;MQRankSum=-2.101;QD=14.55;ReadPosRankSum=3.304;SOR=0.985	GT:AD:DP:GQ:PL	0/1:52,37:89:99:1326,0,1846
1	28559574	rs510803	C	G	4489.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=1.673;DB;DP=81;FS=3.013;MQ=60.00;MQRankSum=1.144;QD=16.51;ReadPosRankSum=2.984;SOR=0.518	GT:AD:DP:GQ:PL	0/1:48,33:81:99:1146,0,1824
1	28559694	rs474597	A	G	2917.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=-0.080;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=0.158;QD=18.59;ReadPosRankSum=0.562;SOR=0.239	GT:AD:DP:GQ:PL	0/1:21,17:38:99:629,0,781
1	28562676	rs12154	A	G	6283.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.041;DB;DP=116;FS=6.181;MQ=60.00;MQRankSum=0.595;QD=16.49;ReadPosRankSum=1.741;SOR=1.412	GT:AD:DP:GQ:PL	0/1:60,56:116:99:2075,0,2284
1	28563008	rs2232720	G	T	1842.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.692;ClippingRankSum=-0.497;DB;DP=120;FS=0.000;MQ=60.00;MQRankSum=1.860;QD=16.45;ReadPosRankSum=3.312;SOR=0.718	GT:AD:DP:GQ:PL	0/0:120,0:120:99:0,360,5149
1	28563084	rs2078348	C	T	914.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;ClippingRankSum=1.458;DB;DP=58;FS=1.311;MQ=60.00;MQRankSum=0.423;QD=15.76;ReadPosRankSum=1.084;SOR=0.417	GT:AD:DP:GQ:PL	0/1:29,29:58:99:945,0,1031
1	28564252	rs8559	A	G	2684.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=-1.125;DB;DP=44;FS=3.015;MQ=60.00;MQRankSum=0.315;QD=15.26;ReadPosRankSum=0.420;SOR=1.110	GT:AD:DP:GQ:PL	0/1:24,20:44:99:747,0,911
1	28564279	rs9508	A	G	2847.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.327;DB;DP=48;FS=1.363;MQ=60.00;MQRankSum=-1.112;QD=15.15;ReadPosRankSum=1.202;SOR=0.857	GT:AD:DP:GQ:PL	0/1:28,20:48:99:721,0,1033
1	28564765	rs59375744	CACAG	C	75.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.684;DB;DP=2;FS=3.979;MQ=60.00;MQRankSum=-1.920;QD=10.79;ReadPosRankSum=0.956;SOR=0.307	GT:AD:DP:GQ:PL	0/1:1,1:2:31:39,0,31
1	28573293	.	G	GA	2075.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.095;DP=64;FS=2.973;MQ=60.08;MQRankSum=-0.317;QD=7.39;ReadPosRankSum=-1.188;SOR=1.931	GT:AD:DP:GQ:PL	0/1:40,24:64:99:451,0,869
1	28586376	rs34315986	C	G	424.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.508;DB;DP=29;FS=0.000;MQ=60.00;MQRankSum=-0.649;QD=14.63;ReadPosRankSum=1.585;SOR=0.750	GT:AD:DP:GQ:PL	0/1:16,13:29:99:455,0,605
1	28598020	rs487437	T	C	1767.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.853;DB;DP=22;FS=3.496;MQ=60.00;MQRankSum=-1.268;QD=20.80;ReadPosRankSum=-0.694;SOR=1.999	GT:AD:DP:GQ:PL	0/1:11,11:22:99:418,0,416
1	28598110	rs67068635	C	G	1901.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.707;DB;DP=50;FS=2.695;MQ=60.00;MQRankSum=-1.977;QD=16.25;ReadPosRankSum=-0.152;SOR=0.460	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,150,2135
1	28696392	rs6703793	C	G	2020.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.856;ClippingRankSum=0.067;DB;DP=54;FS=6.259;MQ=60.00;MQRankSum=-1.728;QD=14.13;ReadPosRankSum=0.696;SOR=1.224	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,160,2099
1	28733775	rs146400683	A	AG	828.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.320;DB;DP=33;FS=0.000;MQ=61.37;MQRankSum=-0.434;QD=13.58;ReadPosRankSum=2.013;SOR=0.063	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1298
1	28733993	rs12091029	G	T	3973.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.594;ClippingRankSum=-1.375;DB;DP=71;FS=0.480;MQ=60.00;MQRankSum=0.703;QD=20.69;ReadPosRankSum=2.357;SOR=0.643	GT:AD:DP:GQ:PL	0/0:71,0:71:99:0,213,3042
1	28800380	rs61785974	C	A	5494.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.322;ClippingRankSum=-0.651;DB;DP=133;FS=0.550;MQ=59.91;MQRankSum=1.022;QD=17.55;ReadPosRankSum=-2.516;SOR=0.727	GT:AD:DP:GQ:PL	0/0:133,0:133:99:0,400,5730
1	28806965	rs72661785	G	C	582.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.244;ClippingRankSum=-0.703;DB;DP=55;FS=0.000;MQ=60.00;MQRankSum=-0.307;QD=13.54;ReadPosRankSum=-0.462;SOR=0.407	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,165,2279
1	28817597	rs10915235	A	G	2162.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.266;ClippingRankSum=1.646;DB;DP=55;FS=15.776;MQ=60.00;MQRankSum=0.139;QD=17.87;ReadPosRankSum=1.499;SOR=0.093	GT:AD:DP:GQ:PL	0/0:55,0:55:99:0,166,2377
1	28834112	.	CT	C	127.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=-0.361;DP=6;FS=0.000;MQ=60.54;MQRankSum=2.219;QD=2.13;ReadPosRankSum=-0.729;SOR=0.892	GT:AD:DP:GQ:PL	0/1:2,4:6:23:23,0,24
1	28834586	rs41270839	G	A	3289.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.529;ClippingRankSum=0.360;DB;DP=60;FS=2.996;MQ=60.00;MQRankSum=-0.217;QD=17.59;ReadPosRankSum=0.251;SOR=0.515	GT:AD:DP:GQ:PL	0/0:60,0:60:99:0,180,2551
1	28856675	rs75050531	A	C	318.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=0.509;ClippingRankSum=-1.056;DB;DP=14;FS=1.222;MQ=60.00;MQRankSum=0.211;QD=10.61;ReadPosRankSum=2.421;SOR=0.976	GT:AD:DP:GQ:PL	0/0:14,0:14:48:0,48,695
1	28856676	.	A	C	10.54	LowQual;SNP_LowQualityDepth;SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.296;ClippingRankSum=-0.330;DP=12;FS=0.000;MQ=60.00;MQRankSum=-0.066;QD=0.55;ReadPosRankSum=-0.347;SOR=0.941	GT:AD:DP:GQ:PL	0/0:12,0:12:42:0,42,630
1	28856677	rs80055855	A	C	336.16	SnpCluster	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-1.395;DB;DP=11;FS=0.000;MQ=60.00;MQRankSum=-0.274;QD=11.21;ReadPosRankSum=2.599;SOR=0.501	GT:AD:DP:GQ:PL	0/0:11,0:11:45:0,45,656
1	28861636	rs2066726	G	A	7977.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.962;ClippingRankSum=1.353;DB;DP=154;FS=1.205;MQ=60.00;MQRankSum=1.197;QD=16.90;ReadPosRankSum=2.222;SOR=0.795	GT:AD:DP:GQ:PL	0/0:154,0:154:99:0,462,6549
1	28863075	rs4654325	A	G	3049.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.924;ClippingRankSum=-0.429;DB;DP=91;FS=9.114;MQ=60.00;MQRankSum=0.022;QD=16.05;ReadPosRankSum=2.205;SOR=1.289	GT:AD:DP:GQ:PL	0/0:91,0:91:99:0,274,3921
1	28879557	rs78405969	C	A	683.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.196;ClippingRankSum=-1.541;DB;DP=43;FS=2.263;MQ=60.00;MQRankSum=-1.277;QD=15.89;ReadPosRankSum=2.648;SOR=1.103	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1802
1	28887031	rs10915245	A	G	1363.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.807;DB;DP=25;FS=0.000;MQ=60.00;MQRankSum=0.376;QD=16.42;ReadPosRankSum=1.727;SOR=0.258	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,1034
1	28898298	.	A	AAAAAAAAAAAATAAAAT	978.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.236;ClippingRankSum=1.123;DP=38;FS=2.256;MQ=60.00;MQRankSum=0.606;QD=16.86;ReadPosRankSum=-3.457;SOR=1.392	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,115,4103
1	28904895	rs140527979	G	GACTT	97.14	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.512;ClippingRankSum=1.058;DB;DP=13;FS=0.000;MQ=60.00;MQRankSum=0.648;QD=6.48;ReadPosRankSum=0.990;SOR=0.042	GT:AD:DP:GQ:PL	0/0:13,0:13:39:0,39,770
1	28905888	.	CA	C	148.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=-0.033;DP=10;FS=0.000;MQ=60.00;MQRankSum=-0.768;QD=5.11;ReadPosRankSum=0.493;SOR=0.200	GT:AD:DP:GQ:PL	0/1:4,6:10:55:55,0,55
1	29018316	rs200962078	TTTTA	T	829.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-1.201;DB;DP=17;FS=3.761;MQ=59.83;MQRankSum=-0.491;QD=6.48;ReadPosRankSum=0.021;SOR=0.093	GT:AD:DP:GQ:PL	0/1:6,11:17:99:446,0,221
1	29019724	rs4654365	G	A	1708.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=1.234;DB;DP=43;FS=0.000;MQ=60.23;MQRankSum=-1.214;QD=17.98;ReadPosRankSum=2.941;SOR=0.879	GT:AD:DP:GQ:PL	0/1:18,25:43:99:779,0,543
1	29019731	.	AT	A,ATT	370.88	PASS	AC=1,0;AF=0.500,0.00;AN=2;BaseQRankSum=1.735;ClippingRankSum=-0.076;DP=23;FS=4.041;MQ=60.27;MQRankSum=-0.465;QD=3.04;ReadPosRankSum=-1.300;SOR=0.096	GT:AD:DP:GQ:PL	0/1:15,6,2:23:47:47,0,385,63,317,469
1	29023674	.	CATATATATATATATATAT	C	368.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.540;ClippingRankSum=-0.694;DP=9;FS=0.000;MQ=59.39;MQRankSum=-0.849;QD=24.55;ReadPosRankSum=1.157;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,9:9:30:410,30,0
1	29028867	rs79545566	T	C	1875.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.963;ClippingRankSum=-0.121;DB;DP=52;FS=1.770;MQ=60.00;MQRankSum=0.358;QD=16.17;ReadPosRankSum=0.671;SOR=1.153	GT:AD:DP:GQ:PL	0/0:52,0:52:99:0,156,2170
1	29037240	rs11415888	C	CT	587.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.774;DB;DP=25;FS=0.000;MQ=60.11;MQRankSum=0.275;QD=7.62;ReadPosRankSum=-0.444;SOR=1.089	GT:AD:DP:GQ:PL	0/1:14,11:25:99:215,0,301
1	29063559	rs6697540	A	C	5891.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;FS=0.000;MQ=60.00;QD=34.81;SOR=0.926	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1447,105,0
1	29064036	rs61787567	C	T	2082.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.143;DB;DP=71;FS=3.082;MQ=60.00;MQRankSum=1.698;QD=16.02;ReadPosRankSum=0.460;SOR=0.982	GT:AD:DP:GQ:PL	0/1:32,39:71:99:1321,0,1154
1	29064941	rs72663860	A	T	1530.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.131;ClippingRankSum=-0.021;DB;DP=34;FS=1.194;MQ=60.00;MQRankSum=0.723;QD=18.00;ReadPosRankSum=-0.168;SOR=0.942	GT:AD:DP:GQ:PL	0/0:34,0:34:99:0,101,1368
1	29070609	rs3835537	A	AG	936.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;ClippingRankSum=0.984;DB;DP=25;FS=0.000;MQ=60.15;MQRankSum=-0.324;QD=18.36;ReadPosRankSum=1.228;SOR=1.099	GT:AD:DP:GQ:PL	0/1:12,13:25:99:450,0,407
1	29070613	rs12084540	A	G	692.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.254;ClippingRankSum=0.887;DB;DP=25;FS=0.000;MQ=60.00;MQRankSum=1.954;QD=14.13;ReadPosRankSum=-1.091;SOR=0.524	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,1113
1	29138975	rs1042114	G	T	3497.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;ClippingRankSum=-0.379;DB;DP=52;FS=4.303;MQ=60.00;MQRankSum=0.503;QD=20.82;ReadPosRankSum=-0.404;SOR=1.414	GT:AD:DP:GQ:PL	0/1:21,31:52:99:1203,0,697
1	29139140	rs12133192	C	G	1918.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.663;ClippingRankSum=-0.545;DB;DP=74;FS=4.485;MQ=60.00;MQRankSum=-0.479;QD=20.63;ReadPosRankSum=4.197;SOR=1.029	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,222,3061
1	29189597	rs2234918	C	T	12534.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=-1.110;DB;DP=143;FS=4.456;MQ=60.00;MQRankSum=0.318;QD=26.56;ReadPosRankSum=-0.527;SOR=1.032	GT:AD:DP:GQ:PL	0/1:71,72:143:99:2697,0,2529
1	29213316	rs77118543	A	C	1811.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.000;MQ=60.00;QD=29.06;SOR=3.516	GT:AD:DP:GQ:PL	1/1:0,13:13:39:559,39,0
1	29320169	rs57725313	C	CT	100.92	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.365;ClippingRankSum=1.447;DB;DP=0;FS=0.000;MQ=59.68;MQRankSum=-0.365;QD=1.94;ReadPosRankSum=-1.447;SOR=1.085	GT:AD:DP:GQ:PL	0/0:0,0:0:0:0,0,1
1	29338633	rs56172343	G	C	1088.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.561;ClippingRankSum=-0.707;DB;DP=22;FS=0.000;MQ=60.35;MQRankSum=0.095;QD=23.17;ReadPosRankSum=1.057;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,22:22:64:729,64,0
1	29342090	.	G	GA	1693.30	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.058;DP=53;FS=3.604;MQ=60.25;MQRankSum=0.256;QD=11.84;ReadPosRankSum=-1.184;SOR=0.273	GT:AD:DP:GQ:PL	1/1:6,47:53:15:1077,15,0
1	29345009	rs5773229	C	CTT	5697.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;FS=0.000;MQ=60.25;QD=33.46;SOR=6.885	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1690,114,0
1	29345027	rs2985334	T	G	4675.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MQ=60.00;QD=27.92;SOR=6.556	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1279,87,0
1	29379992	rs2788888	G	A	2257.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;ClippingRankSum=-0.508;DB;DP=32;FS=3.310;MQ=60.00;MQRankSum=-0.886;QD=28.58;ReadPosRankSum=0.949;SOR=0.170	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1402,96,0
1	29385486	rs2153165	G	C	3958.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.232;ClippingRankSum=1.423;DB;DP=54;FS=1.108;MQ=60.00;MQRankSum=-0.694;QD=29.33;ReadPosRankSum=0.811;SOR=0.493	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2330,162,0
1	29391396	rs12070152	A	G	1365.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.990;ClippingRankSum=-0.656;DB;DP=25;FS=0.000;MQ=60.00;MQRankSum=-0.522;QD=25.77;ReadPosRankSum=2.340;SOR=0.426	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1088,75,0
1	29439016	rs4654390	T	A	7779.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.853;ClippingRankSum=0.101;DB;DP=128;FS=1.848;MQ=60.00;MQRankSum=-1.214;QD=28.09;ReadPosRankSum=-0.906;SOR=0.844	GT:AD:DP:GQ:PL	0/0:128,0:128:99:0,385,5520
1	29450284	rs71682700	CGAGG	C	251.71	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.752;ClippingRankSum=1.562;DB;DP=6;FS=2.158;MQ=59.37;MQRankSum=0.405;QD=25.17;ReadPosRankSum=0.068;SOR=1.609	GT:AD:DP:GQ:PL	0/0:6,0:6:18:0,18,336
1	29450446	.	G	GGCCCCA	112.32	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.636;ClippingRankSum=-0.636;DP=5;FS=6.892;MQ=60.00;MQRankSum=-0.495;QD=11.23;ReadPosRankSum=-0.071;SOR=1.609	GT:AD:DP:GQ:PL	0/0:5,0:5:15:0,15,314
1	29474134	rs2452782	A	C	54.98	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.358;ClippingRankSum=-0.358;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=-0.358;QD=27.49;ReadPosRankSum=-0.358;SOR=1.609	GT:AD:DP:GQ:PL	0/0:2,0:2:6:0,6,81
1	29475341	rs2230678	C	T	5277.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.241;ClippingRankSum=-0.162;DB;DP=104;FS=16.266;MQ=60.00;MQRankSum=0.587;QD=29.32;ReadPosRankSum=0.464;SOR=0.824	GT:AD:DP:GQ:PL	0/0:104,0:104:99:0,312,4432
1	29475394	rs2230677	C	G	6009.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.048;ClippingRankSum=0.598;DB;DP=105;FS=5.683;MQ=60.00;MQRankSum=0.182;QD=30.66;ReadPosRankSum=1.050;SOR=0.999	GT:AD:DP:GQ:PL	0/0:105,0:105:99:0,315,4430
1	29475648	rs2230679	T	G	5881.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.714;ClippingRankSum=0.654;DB;DP=78;FS=10.956;MQ=60.00;MQRankSum=-0.823;QD=28.01;ReadPosRankSum=1.049;SOR=1.327	GT:AD:DP:GQ:PL	0/0:78,0:78:99:0,232,3177
1	29486011	rs72649257	C	T	2866.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.128;ClippingRankSum=-0.299;DB;DP=42;FS=2.129;MQ=60.00;MQRankSum=1.621;QD=20.62;ReadPosRankSum=3.927;SOR=0.998	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,126,1749
1	29529699	rs1062924	T	C	5042.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.340;ClippingRankSum=-1.077;DB;DP=81;FS=5.007;MQ=60.00;MQRankSum=-0.196;QD=27.41;ReadPosRankSum=1.546;SOR=0.993	GT:AD:DP:GQ:PL	0/0:81,0:81:99:0,244,3453
1	29529943	rs12032476	C	T	1721.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.441;DB;DP=35;FS=0.000;MQ=60.00;MQRankSum=0.024;QD=26.09;ReadPosRankSum=0.580;SOR=0.892	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,105,1470
1	29542435	rs2640469	C	G	10658.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.000;MQ=60.00;QD=28.29;SOR=3.385	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3217,244,0
1	29542637	rs1128400	A	G	5807.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.086;ClippingRankSum=-0.980;DB;DP=89;FS=0.479;MQ=60.00;MQRankSum=0.377;QD=31.23;ReadPosRankSum=0.194;SOR=0.639	GT:AD:DP:GQ:PL	0/0:89,0:89:99:0,266,3672
1	29542926	rs3003636	A	T	2574.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.728;ClippingRankSum=1.363;DB;DP=43;FS=6.434;MQ=60.00;MQRankSum=-0.933;QD=31.79;ReadPosRankSum=-1.523;SOR=0.265	GT:AD:DP:GQ:PL	0/0:43,0:43:99:0,129,1810
1	29557224	rs2640466	C	T	6260.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.826;ClippingRankSum=-0.131;DB;DP=109;FS=0.810;MQ=60.00;MQRankSum=1.003;QD=25.77;ReadPosRankSum=0.325;SOR=0.753	GT:AD:DP:GQ:PL	0/0:109,0:109:99:0,327,4601
1	29563015	rs3103883	G	C	1450.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MQ=60.00;QD=34.36;SOR=3.737	GT:AD:DP:GQ:PL	1/1:0,7:7:21:291,21,0
1	29563059	rs75011501	C	T	1277.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.295;DB;DP=18;FS=0.000;MQ=60.00;MQRankSum=-1.526;QD=26.62;ReadPosRankSum=-0.705;SOR=0.693	GT:AD:DP:GQ:PL	0/0:18,0:18:54:0,54,790
1	29586188	rs72649289	C	T	443.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;ClippingRankSum=-0.202;DB;DP=17;FS=5.482;MQ=60.00;MQRankSum=0.560;QD=26.07;ReadPosRankSum=0.426;SOR=0.111	GT:AD:DP:GQ:PL	0/1:6,11:17:99:474,0,424
1	29586213	rs72649290	G	T	242.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=-1.268;DB;DP=14;FS=2.290;MQ=60.00;MQRankSum=1.268;QD=17.30;ReadPosRankSum=1.425;SOR=0.165	GT:AD:DP:GQ:PL	0/1:7,7:14:99:273,0,485
1	29587407	rs72649292	A	C	1739.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.124;ClippingRankSum=1.299;DB;DP=75;FS=1.208;MQ=60.00;MQRankSum=0.569;QD=18.90;ReadPosRankSum=1.776;SOR=0.397	GT:AD:DP:GQ:PL	0/0:74,1:75:99:0,182,3154
1	29605646	rs72651203	C	T	1351.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;ClippingRankSum=-0.718;DB;DP=75;FS=6.706;MQ=60.00;MQRankSum=-0.077;QD=17.78;ReadPosRankSum=2.117;SOR=1.293	GT:AD:DP:GQ:PL	0/1:38,37:75:99:1382,0,1364
1	29609502	rs111595207	TG	T	670.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.688;DB;DP=60;FS=0.000;MQ=60.06;MQRankSum=-0.380;QD=10.99;ReadPosRankSum=-0.524;SOR=0.581	GT:AD:DP:GQ:PL	0/1:32,28:60:99:710,0,831
1	29616318	rs2076620	C	A	3300.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=-0.324;DB;DP=80;FS=5.782;MQ=60.00;MQRankSum=-0.659;QD=16.34;ReadPosRankSum=1.954;SOR=1.231	GT:AD:DP:GQ:PL	0/1:46,34:80:99:1246,0,1707
1	29618387	rs116098859	G	A	2832.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.238;ClippingRankSum=-1.319;DB;DP=149;FS=2.645;MQ=60.00;MQRankSum=-0.089;QD=18.76;ReadPosRankSum=2.345;SOR=1.034	GT:AD:DP:GQ:PL	0/1:72,77:149:99:2863,0,2577
1	29630554	rs61733825	T	C	518.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=-1.467;DB;DP=37;FS=0.000;MQ=59.19;MQRankSum=-1.538;QD=14.00;ReadPosRankSum=1.789;SOR=0.190	GT:AD:DP:GQ:PL	0/1:22,15:37:99:549,0,816
1	29631236	rs3831903	C	CTA	10504.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.081;ClippingRankSum=-0.959;DB;DP=139;FS=1.113;MQ=60.02;MQRankSum=-0.246;QD=29.26;ReadPosRankSum=0.188;SOR=0.805	GT:AD:DP:GQ:PL	1/1:0,139:139:99:6311,424,0
1	29631782	rs2235935	C	T	1202.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=1.195;DB;DP=65;FS=1.406;MQ=60.00;MQRankSum=-0.237;QD=18.49;ReadPosRankSum=0.300;SOR=0.395	GT:AD:DP:GQ:PL	0/1:31,34:65:99:1233,0,1132
1	29633491	rs3835409	T	TCAGCC	1043.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=1.039;DB;DP=37;FS=4.230;MQ=60.19;MQRankSum=0.106;QD=15.12;ReadPosRankSum=-0.903;SOR=0.173	GT:AD:DP:GQ:PL	0/1:23,14:37:99:549,0,1432
1	29637136	rs2235939	T	C	1708.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=-0.436;DB;DP=45;FS=0.000;MQ=60.00;MQRankSum=0.247;QD=18.98;ReadPosRankSum=0.439;SOR=0.434	GT:AD:DP:GQ:PL	0/1:21,24:45:99:873,0,757
1	29649874	rs10915252	T	C	1853.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;ClippingRankSum=1.252;DB;DP=74;FS=2.001;MQ=60.00;MQRankSum=0.817;QD=14.48;ReadPosRankSum=1.753;SOR=0.939	GT:AD:DP:GQ:PL	0/1:44,30:74:99:1088,0,1705
1	29651995	rs35787885	C	T	2003.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.748;DB;DP=99;FS=7.238;MQ=60.00;MQRankSum=0.916;QD=20.23;ReadPosRankSum=2.488;SOR=1.177	GT:AD:DP:GQ:PL	0/1:42,57:99:99:2034,0,1492
1	29652068	rs2076618	T	C	3932.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.286;DB;DP=121;FS=0.859;MQ=60.00;MQRankSum=0.865;QD=18.04;ReadPosRankSum=2.677;SOR=0.634	GT:AD:DP:GQ:PL	0/1:57,64:121:99:2264,0,1977
1	29652327	rs68078224	T	C	470.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=-0.430;DB;DP=22;FS=0.000;MQ=60.00;MQRankSum=-0.853;QD=21.37;ReadPosRankSum=0.522;SOR=0.043	GT:AD:DP:GQ:PL	0/1:9,13:22:99:501,0,330
1	29674996	rs12079023	C	T	434.61	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.557;ClippingRankSum=-0.778;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=-0.156;QD=33.43;ReadPosRankSum=1.868;SOR=1.061	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,40
1	29675102	rs34208132	CTTTT	C	542.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.819;DB;DP=7;FS=0.000;MQ=61.26;MQRankSum=-1.449;QD=31.91;ReadPosRankSum=1.701;SOR=0.368	GT:AD:DP:GQ:PL	0/1:1,6:7:24:249,0,24
1	29696060	rs56203706	T	C	4995.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=-0.415;DB;DP=69;FS=1.577;MQ=60.00;MQRankSum=0.396;QD=23.79;ReadPosRankSum=0.625;SOR=0.921	GT:AD:DP:GQ:PL	0/1:39,30:69:99:1079,0,1427
1	29842261	rs10915168	A	T	4037.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.000;MQ=59.71;QD=29.12;SOR=2.880	GT:AD:DP:GQ:PL	1/1:0,28:28:83:1151,83,0
1	31186254	rs1188405	A	G	2018.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.289;ClippingRankSum=-0.689;DB;DP=20;FS=0.000;MQ=60.00;MQRankSum=0.404;QD=25.88;ReadPosRankSum=1.204;SOR=0.914	GT:AD:DP:GQ:PL	0/0:20,0:20:60:0,60,827
1	31186387	rs1746059	C	T	4715.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.629;ClippingRankSum=-0.957;DB;DP=62;FS=0.000;MQ=60.00;MQRankSum=0.397;QD=28.93;ReadPosRankSum=1.228;SOR=0.719	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,186,2583
1	31188901	rs20566	A	G	9317.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=4.590;ClippingRankSum=1.299;DB;DP=141;FS=4.991;MQ=60.00;MQRankSum=0.969;QD=28.76;ReadPosRankSum=2.637;SOR=1.059	GT:AD:DP:GQ:PL	0/0:140,1:141:99:0,386,5880
1	31196255	rs45601237	G	A	1218.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.127;ClippingRankSum=-1.211;DB;DP=17;FS=3.718;MQ=60.00;MQRankSum=0.507;QD=29.02;ReadPosRankSum=-0.788;SOR=1.781	GT:AD:DP:GQ:PL	1/1:0,17:17:51:724,51,0
1	31206806	rs3795437	T	C	2260.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.797;DB;DP=93;FS=3.541;MQ=60.00;MQRankSum=1.261;QD=21.94;ReadPosRankSum=0.100;SOR=0.991	GT:AD:DP:GQ:PL	0/0:93,0:93:99:0,279,3999
1	31206957	rs12404920	T	C	871.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.791;DB;DP=56;FS=0.000;MQ=60.00;MQRankSum=-0.220;QD=15.28;ReadPosRankSum=-0.205;SOR=0.024	GT:AD:DP:GQ:PL	0/0:56,0:56:99:0,168,2381
1	31207781	rs10914189	C	T	2320.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.506;ClippingRankSum=-1.066;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=-1.131;QD=26.99;ReadPosRankSum=1.538;SOR=0.593	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1655,114,0
1	31210656	rs56296001	G	A	1217.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=1.298;DB;DP=32;FS=9.100;MQ=60.00;MQRankSum=0.318;QD=17.64;ReadPosRankSum=0.709;SOR=0.030	GT:AD:DP:GQ:PL	0/1:14,18:32:99:659,0,487
1	31215364	rs1050663	T	C	7663.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.201;DB;DP=121;FS=0.000;MQ=60.00;MQRankSum=-0.961;QD=26.89;ReadPosRankSum=0.049;SOR=0.703	GT:AD:DP:GQ:PL	0/0:121,0:121:99:0,366,5186
1	31230195	rs1407882	T	C	2008.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=1.091;DB;DP=34;FS=0.000;MQ=60.00;MQRankSum=-0.251;QD=23.63;ReadPosRankSum=-1.986;SOR=1.395	GT:AD:DP:GQ:PL	0/1:20,14:34:99:469,0,759
1	31342403	.	A	AAAAAAC	36.84	PASS	AC=0;AF=0.00;AN=0;DP=1;FS=0.000;MQ=60.00;QD=31.70;SOR=1.609	GT	./.
1	31347399	rs4949184	C	T	4130.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.923;ClippingRankSum=-1.015;DB;DP=115;FS=6.251;MQ=60.00;MQRankSum=0.002;QD=17.80;ReadPosRankSum=-0.061;SOR=1.085	GT:AD:DP:GQ:PL	0/0:115,0:115:99:0,343,4698
1	31349647	rs2491132	C	T	3973.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.325;ClippingRankSum=-1.114;DB;DP=104;FS=1.912;MQ=60.00;MQRankSum=-0.339;QD=15.89;ReadPosRankSum=2.279;SOR=0.571	GT:AD:DP:GQ:PL	0/0:104,0:104:99:0,313,4373
1	31351513	rs1891419	G	A	3956.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.478;ClippingRankSum=-0.270;DB;DP=105;FS=0.885;MQ=60.00;MQRankSum=0.825;QD=17.82;ReadPosRankSum=-1.385;SOR=0.752	GT:AD:DP:GQ:PL	0/0:105,0:105:99:0,314,4384
1	31406286	rs71826076	TAC	T	209.88	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.293;ClippingRankSum=1.244;DB;DP=12;FS=0.000;MQ=60.31;MQRankSum=-0.268;QD=2.84;ReadPosRankSum=0.171;SOR=0.922	GT:AD:DP:GQ:PL	0/0:10,2:12:15:0,15,181
1	31409726	rs141120088	CCT	C	5534.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.892;ClippingRankSum=-0.455;DB;DP=60;FS=0.814;MQ=60.17;MQRankSum=-0.409;QD=28.53;ReadPosRankSum=-0.063;SOR=0.618	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2694,181,0
1	31413972	rs3795433	T	C	2251.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.524;ClippingRankSum=-1.088;DB;DP=48;FS=12.741;MQ=60.00;MQRankSum=0.661;QD=17.05;ReadPosRankSum=1.546;SOR=0.146	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,2067
1	31415039	rs4949187	TA	T	3347.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.000;MQ=59.75;QD=33.47;SOR=4.778	GT:AD:DP:GQ:PL	1/1:0,17:17:51:660,51,0
1	31415041	.	TATATATATATATATA	T,TTA	3129.86	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=3;FS=0.000;MQ=59.75;QD=28.42;SOR=5.486	GT:AD:DP:GQ:PL	1/2:0,1,2:3:25:573,78,32,73,0,25
1	31418119	rs12142833	C	T	2921.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.914;DB;DP=32;FS=0.000;MQ=60.00;MQRankSum=-3.124;QD=22.30;ReadPosRankSum=1.505;SOR=0.574	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1392,96,0
1	31426815	rs2275741	A	G	7477.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.00;QD=31.87;SOR=6.678	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1653,116,0
1	31439280	rs61778255	G	C	838.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.361;ClippingRankSum=0.630;DB;DP=22;FS=0.000;MQ=60.00;MQRankSum=-1.839;QD=17.83;ReadPosRankSum=0.414;SOR=0.232	GT:AD:DP:GQ:PL	0/0:22,0:22:66:0,66,923
1	31439292	rs56272895	T	C	617.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.606;DB;DP=16;FS=0.000;MQ=60.00;MQRankSum=-0.069;QD=15.43;ReadPosRankSum=-1.540;SOR=0.245	GT:AD:DP:GQ:PL	0/0:15,1:16:38:0,38,637
1	31440921	rs4317854	G	A	3551.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MQ=60.00;QD=32.55;SOR=7.476	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1224,87,0
1	31445932	rs2491135	C	G	5053.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.00;QD=31.43;SOR=4.668	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1630,117,0
1	31446069	rs147089646	TG	T	1963.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.649;ClippingRankSum=-1.759;DB;DP=37;FS=1.590;MQ=60.00;MQRankSum=-0.304;QD=14.33;ReadPosRankSum=1.193;SOR=0.929	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1079,114,0
1	31446071	.	T	A	1969.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.760;DP=38;FS=0.753;MQ=60.00;MQRankSum=0.346;QD=14.70;ReadPosRankSum=0.542;SOR=0.836	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1079,114,0
1	31446099	.	T	TA	444.88	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.324;ClippingRankSum=-0.635;DP=23;FS=0.000;MQ=60.00;MQRankSum=0.161;QD=6.01;ReadPosRankSum=-2.464;SOR=0.776	GT:AD:DP:GQ:PL	0/0:21,2:23:10:0,10,367
1	31465631	rs72657295	A	G	504.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=-0.309;DB;DP=23;FS=0.000;MQ=60.00;MQRankSum=1.260;QD=21.92;ReadPosRankSum=1.718;SOR=0.093	GT:AD:DP:GQ:PL	0/1:9,14:23:99:535,0,302
1	31478638	.	AAGAGAG	A	3810.86	PASS	AC=2;AF=1.00;AN=2;DP=33;FS=0.000;MQ=58.40;QD=27.61;SOR=3.690	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1413,100,0
1	31479005	rs1337046	C	T	2798.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.243;ClippingRankSum=1.230;DB;DP=33;FS=10.246;MQ=60.00;MQRankSum=-0.293;QD=26.15;ReadPosRankSum=1.157;SOR=0.094	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1405,99,0
1	31501755	rs4949331	T	C	3986.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.848;ClippingRankSum=-0.952;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=0.145;QD=22.52;ReadPosRankSum=-0.842;SOR=0.703	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1702,117,0
1	31654940	rs2297959	C	T	5778.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0.688;DB;DP=61;FS=3.648;MQ=60.00;MQRankSum=-0.328;QD=33.99;ReadPosRankSum=0.036;SOR=1.604	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2457,182,0
1	31712314	rs12025507	C	T	978.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.996;ClippingRankSum=-0.090;DB;DP=27;FS=3.953;MQ=60.00;MQRankSum=-0.090;QD=16.86;ReadPosRankSum=1.723;SOR=1.270	GT:AD:DP:GQ:PL	0/0:27,0:27:81:0,81,1057
1	31732390	rs6425725	G	A	5228.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MQ=60.00;QD=31.57;SOR=8.395	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1510,116,0
1	31732602	.	CA	C	1495.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=1.077;DP=58;FS=11.460;MQ=60.19;MQRankSum=0.285;QD=6.62;ReadPosRankSum=1.356;SOR=0.236	GT:AD:DP:GQ:PL	0/1:12,46:58:99:638,0,137
1	31732892	rs2292165	G	A	2307.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.463;ClippingRankSum=0.665;DB;DP=96;FS=0.000;MQ=60.00;MQRankSum=-0.782;QD=18.91;ReadPosRankSum=2.475;SOR=0.662	GT:AD:DP:GQ:PL	0/0:96,0:96:99:0,288,4116
1	31733674	rs36125997	C	A	238.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.305;DB;DP=35;FS=0.000;MQ=58.84;MQRankSum=0.156;QD=14.01;ReadPosRankSum=-0.230;SOR=0.116	GT:AD:DP:GQ:PL	0/0:35,0:35:99:0,104,1370
1	31733710	.	C	CA	47.11	INDEL_LowQualityDepth	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.551;ClippingRankSum=-1.367;DP=39;FS=0.000;MQ=59.38;MQRankSum=0.755;QD=1.96;ReadPosRankSum=-0.329;SOR=0.061	GT:AD:DP:GQ:PL	0/0:38,1:39:99:0,119,1642
1	31733721	rs71028752	A	AAAG	2648.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;ClippingRankSum=0.395;DB;DP=59;FS=0.000;MQ=61.68;MQRankSum=-0.909;QD=19.62;ReadPosRankSum=4.696;SOR=0.966	GT:AD:DP:GQ:PL	1/1:6,53:59:67:1584,67,0
1	31733782	rs10914338	T	A	7231.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.433;ClippingRankSum=-1.954;DB;DP=99;FS=9.762;MQ=61.16;MQRankSum=2.439;QD=26.98;ReadPosRankSum=-0.402;SOR=0.187	GT:AD:DP:GQ:PL	1/1:0,99:99:99:4182,290,0
1	31733926	rs12121460	A	G	9704.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.886;ClippingRankSum=-0.110;DB;DP=100;FS=6.032;MQ=59.82;MQRankSum=-2.160;QD=23.96;ReadPosRankSum=-0.138;SOR=0.457	GT:AD:DP:GQ:PL	1/1:0,100:100:99:4053,299,0
1	31734033	.	CA	C	2108.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.815;ClippingRankSum=-1.049;DP=53;FS=1.661;MQ=59.96;MQRankSum=0.421;QD=8.43;ReadPosRankSum=0.456;SOR=0.519	GT:AD:DP:GQ:PL	1/1:3,50:53:83:1105,83,0
1	31734353	rs41303429	C	T	2949.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=1.404;DB;DP=78;FS=1.574;MQ=60.00;MQRankSum=0.170;QD=16.03;ReadPosRankSum=2.727;SOR=0.709	GT:AD:DP:GQ:PL	0/1:37,41:78:99:1456,0,1276
1	31740668	rs3753374	C	T	2058.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;ClippingRankSum=-0.852;DB;DP=35;FS=0.914;MQ=60.00;MQRankSum=0.268;QD=29.84;ReadPosRankSum=0.778;SOR=0.567	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1535,105,0
1	31740706	rs3753373	A	G	1841.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.295;ClippingRankSum=-0.237;DB;DP=40;FS=4.433;MQ=60.00;MQRankSum=-1.562;QD=19.18;ReadPosRankSum=-0.761;SOR=1.097	GT:AD:DP:GQ:PL	0/0:40,0:40:99:0,119,1662
1	31744168	rs3737755	G	A	2190.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.040;DB;DP=32;FS=3.275;MQ=60.00;MQRankSum=-1.198;QD=25.48;ReadPosRankSum=-0.964;SOR=1.184	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1394,96,0
1	31744505	rs144833510	A	AT	700.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.636;ClippingRankSum=-1.484;DB;DP=15;FS=5.607;MQ=60.39;MQRankSum=0.727;QD=12.73;ReadPosRankSum=0.363;SOR=3.426	GT:AD:DP:GQ:PL	1/1:0,15:15:45:420,45,0
1	31754367	rs7513215	T	C	1594.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.476;ClippingRankSum=-0.302;DB;DP=66;FS=2.128;MQ=60.00;MQRankSum=0.931;QD=16.78;ReadPosRankSum=0.114;SOR=0.522	GT:AD:DP:GQ:PL	0/0:66,0:66:99:0,199,2873
1	31754511	rs4949374	G	C	2351.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;ClippingRankSum=1.233;DB;DP=37;FS=3.375;MQ=60.00;MQRankSum=0.667;QD=30.54;ReadPosRankSum=0.918;SOR=0.162	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1631,111,0
1	31761989	rs1532859	G	A	7758.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MQ=60.00;QD=27.49;SOR=7.179	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2066,144,0
1	31762374	rs1532858	C	T	4139.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.846;ClippingRankSum=2.089;DB;DP=44;FS=1.401;MQ=60.00;MQRankSum=1.235;QD=26.36;ReadPosRankSum=-0.397;SOR=0.839	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1903,132,0
1	31764693	rs12135540	G	A	2634.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.387;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=0.517;QD=29.28;ReadPosRankSum=-1.109;SOR=0.756	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1774,126,0
1	31764713	rs111660652	C	CAAG	2823.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.422;ClippingRankSum=1.910;DB;DP=42;FS=12.490;MQ=60.00;MQRankSum=-0.732;QD=30.36;ReadPosRankSum=0.074;SOR=2.858	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1889,126,0
1	31764930	rs10733007	T	C	6015.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MQ=59.39;QD=34.75;SOR=5.226	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2028,144,0
1	31765968	rs1546375	C	T	3226.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.633;ClippingRankSum=0.124;DB;DP=47;FS=4.068;MQ=60.00;MQRankSum=-0.378;QD=27.12;ReadPosRankSum=-1.050;SOR=1.037	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2057,141,0
1	31792141	rs4949384	A	G	1461.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.758;ClippingRankSum=-1.486;DB;DP=27;FS=0.000;MQ=60.00;MQRankSum=-1.068;QD=24.37;ReadPosRankSum=0.828;SOR=0.357	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1159,81,0
1	31819407	rs34746219	A	C	513.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-3.368;ClippingRankSum=-1.015;DB;DP=25;FS=0.000;MQ=60.00;MQRankSum=1.004;QD=16.04;ReadPosRankSum=-0.560;SOR=0.056	GT:AD:DP:GQ:PL	0/0:25,0:25:75:0,75,1050
1	31821932	rs34282779	TA	T	927.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.714;DB;DP=31;FS=1.880;MQ=59.99;MQRankSum=1.048;QD=14.49;ReadPosRankSum=1.154;SOR=0.278	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1159
1	31837089	rs12139997	T	C	1384.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.261;ClippingRankSum=1.779;DB;DP=46;FS=2.008;MQ=60.00;MQRankSum=0.803;QD=22.32;ReadPosRankSum=0.429;SOR=0.934	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1965
1	31838551	.	T	TA	130.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.400;DP=3;FS=0.000;MQ=60.20;MQRankSum=0.133;QD=3.83;ReadPosRankSum=1.381;SOR=1.329	GT:AD:DP:GQ:PL	0/1:1,2:3:1:20,0,1
1	31840426	rs2271072	C	G	2916.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.872;ClippingRankSum=0.483;DB;DP=43;FS=3.787;MQ=60.00;MQRankSum=1.295;QD=24.72;ReadPosRankSum=-0.376;SOR=0.119	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1860,129,0
1	31882330	rs1018164	T	G	3172.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MQ=60.00;QD=25.84;SOR=5.784	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1017,69,0
1	31882582	rs113179499	G	GGCCTCA	4401.86	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.625;ClippingRankSum=-1.533;DB;DP=81;FS=1.033;MQ=60.04;MQRankSum=0.760;QD=24.05;ReadPosRankSum=-1.550;SOR=0.797	GT:AD:DP:GQ:PL	0/0:81,0:81:99:0,244,5318
1	31883295	rs6701521	T	C	3611.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.070;ClippingRankSum=-0.107;DB;DP=48;FS=0.000;MQ=60.00;MQRankSum=1.569;QD=31.96;ReadPosRankSum=4.969;SOR=0.708	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,144,2032
1	31886163	rs12042883	C	T	3025.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.154;DB;DP=65;FS=0.568;MQ=60.00;MQRankSum=0.734;QD=17.49;ReadPosRankSum=1.350;SOR=0.774	GT:AD:DP:GQ:PL	0/0:65,0:65:99:0,196,2781
1	31886564	rs10914376	C	G	1200.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.708;ClippingRankSum=-1.448;DB;DP=28;FS=6.740;MQ=60.00;MQRankSum=0.296;QD=25.02;ReadPosRankSum=-0.254;SOR=1.561	GT:AD:DP:GQ:PL	0/0:28,0:28:84:0,84,1179
1	31886833	rs10914377	T	C	3689.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.879;DB;DP=63;FS=0.000;MQ=60.00;MQRankSum=0.607;QD=25.62;ReadPosRankSum=0.891;SOR=0.711	GT:AD:DP:GQ:PL	0/0:63,0:63:99:0,188,2602
1	31896608	rs78029434	C	T	2974.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.434;ClippingRankSum=-4.117;DB;DP=74;FS=0.000;MQ=60.00;MQRankSum=-0.828;QD=18.36;ReadPosRankSum=0.519;SOR=0.649	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,222,3230
1	31897493	rs1320585	A	G	8530.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;FS=0.000;MQ=60.00;QD=29.88;SOR=7.368	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2495,180,0
1	31897773	rs12145995	C	T	1626.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.167;ClippingRankSum=-1.772;DB;DP=63;FS=2.620;MQ=60.00;MQRankSum=-0.879;QD=19.83;ReadPosRankSum=3.283;SOR=0.310	GT:AD:DP:GQ:PL	0/0:63,0:63:99:0,189,2621
1	31898132	rs4949400	T	C	6489.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;ClippingRankSum=1.423;DB;DP=114;FS=0.000;MQ=60.00;MQRankSum=1.470;QD=28.09;ReadPosRankSum=2.036;SOR=0.719	GT:AD:DP:GQ:PL	1/1:1,113:114:99:4753,298,0
1	31898162	rs4949401	C	T	8268.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.345;ClippingRankSum=-0.518;DB;DP=137;FS=1.766;MQ=60.00;MQRankSum=1.159;QD=29.96;ReadPosRankSum=-0.130;SOR=0.850	GT:AD:DP:GQ:PL	1/1:0,137:137:99:5851,412,0
1	31898234	rs4949402	T	C	8320.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.778;ClippingRankSum=-0.004;DB;DP=135;FS=0.539;MQ=60.00;MQRankSum=-0.007;QD=28.21;ReadPosRankSum=-0.731;SOR=0.632	GT:AD:DP:GQ:PL	1/1:1,134:135:99:5734,361,0
1	31898279	rs4949403	A	C	6238.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.485;ClippingRankSum=-0.451;DB;DP=108;FS=0.499;MQ=60.00;MQRankSum=1.854;QD=27.61;ReadPosRankSum=-0.963;SOR=0.751	GT:AD:DP:GQ:PL	1/1:1,107:108:99:4436,279,0
1	31898463	rs2275436	C	T	2759.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;ClippingRankSum=1.920;DB;DP=50;FS=9.177;MQ=60.00;MQRankSum=1.717;QD=24.64;ReadPosRankSum=-2.028;SOR=1.307	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2109,150,0
1	31898536	rs2275435	C	T	3384.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.594;ClippingRankSum=1.123;DB;DP=56;FS=4.840;MQ=60.00;MQRankSum=-0.594;QD=28.69;ReadPosRankSum=-0.604;SOR=0.408	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2287,168,0
1	31899684	rs10454445	A	T	5854.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;ClippingRankSum=-0.545;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=-0.618;QD=31.72;ReadPosRankSum=-1.441;SOR=4.294	GT:AD:DP:GQ:PL	1/1:1,37:38:99:1501,103,0
1	31899704	rs10454446	C	T	4835.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;ClippingRankSum=-1.018;DB;DP=41;FS=4.947;MQ=60.00;MQRankSum=0.646;QD=33.58;ReadPosRankSum=-0.423;SOR=3.148	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1733,123,0
1	31902279	rs34728687	G	A	2609.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.412;ClippingRankSum=-0.665;DB;DP=168;FS=5.106;MQ=60.00;MQRankSum=-1.258;QD=18.12;ReadPosRankSum=-1.313;SOR=1.145	GT:AD:DP:GQ:PL	0/0:168,0:168:99:0,502,6887
1	31902418	rs10047085	A	G	5477.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.180;DB;DP=92;FS=5.686;MQ=59.95;MQRankSum=-0.203;QD=25.84;ReadPosRankSum=1.634;SOR=0.362	GT:AD:DP:GQ:PL	0/0:92,0:92:99:0,277,3979
1	31905730	rs7547845	T	C	6154.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=60.00;QD=23.72;SOR=5.742	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1837,126,0
1	31905889	rs3050461	A	ACAG	10476.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.376;DB;DP=78;FS=11.500;MQ=60.27;MQRankSum=-1.987;QD=31.12;ReadPosRankSum=1.871;SOR=1.941	GT:AD:DP:GQ:PL	1/1:1,77:78:99:3500,198,0
1	31906882	rs11587589	A	G	9636.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.000;MQ=60.00;QD=31.85;SOR=1.219	GT:AD:DP:GQ:PL	1/1:0,72:72:99:3063,217,0
1	31907102	rs7417775	A	G	5385.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.000;MQ=60.00;QD=31.67;SOR=5.186	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1558,108,0
1	31907457	rs4233	A	C	314.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MQ=60.00;QD=29.37;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
1	31971684	rs1316427	C	G	2717.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.883;ClippingRankSum=-1.236;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=0.981;QD=29.87;ReadPosRankSum=-0.002;SOR=0.862	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1797,126,0
1	31971701	rs201612393	GC	G	917.09	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.091;ClippingRankSum=-0.006;DB;DP=48;FS=0.000;MQ=60.00;MQRankSum=-0.434;QD=24.13;ReadPosRankSum=-1.257;SOR=0.042	GT:AD:DP:GQ:PL	0/0:48,0:48:99:0,147,2188
1	31971707	rs35567548	G	A	959.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.955;ClippingRankSum=0.568;DB;DP=50;FS=0.000;MQ=60.00;MQRankSum=0.144;QD=23.98;ReadPosRankSum=-1.740;SOR=0.045	GT:AD:DP:GQ:PL	0/0:50,0:50:99:0,153,2263
1	31973122	rs112889748	GTGGAGTCTGTC	G	4675.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;ClippingRankSum=0.675;DB;DP=64;FS=0.445;MQ=60.22;MQRankSum=0.143;QD=23.86;ReadPosRankSum=-1.445;SOR=0.743	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2994,202,0
1	31973138	rs56235358	T	C	4878.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.683;ClippingRankSum=-0.356;DB;DP=67;FS=3.986;MQ=60.15;MQRankSum=-0.460;QD=25.28;ReadPosRankSum=0.617;SOR=0.925	GT:AD:DP:GQ:PL	1/1:0,67:67:99:3071,208,0
1	31973215	rs1320577	G	A	4416.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;ClippingRankSum=-1.185;DB;DP=69;FS=3.500;MQ=60.15;MQRankSum=0.898;QD=23.49;ReadPosRankSum=1.948;SOR=0.921	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2973,207,0
1	31973266	rs10753250	G	A	4518.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.659;ClippingRankSum=0.687;DB;DP=65;FS=0.938;MQ=60.00;MQRankSum=0.272;QD=25.53;ReadPosRankSum=1.276;SOR=0.759	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2849,196,0
1	31973348	rs1574106	A	C	5223.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.240;ClippingRankSum=-0.647;DB;DP=83;FS=0.416;MQ=60.00;MQRankSum=-0.456;QD=25.86;ReadPosRankSum=2.907;SOR=0.656	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3500,248,0
1	31973409	rs1574105	G	A	5605.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.687;ClippingRankSum=-0.748;DB;DP=87;FS=5.492;MQ=60.00;MQRankSum=0.972;QD=28.31;ReadPosRankSum=-1.528;SOR=0.994	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3769,262,0
1	31973440	rs1574104	G	A	4694.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.681;ClippingRankSum=-0.609;DB;DP=69;FS=3.655;MQ=60.00;MQRankSum=-0.692;QD=26.68;ReadPosRankSum=2.456;SOR=0.933	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2928,207,0
1	31973481	rs1573837	C	T	3994.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.937;ClippingRankSum=-0.984;DB;DP=52;FS=1.171;MQ=60.00;MQRankSum=-1.302;QD=27.55;ReadPosRankSum=0.491;SOR=0.791	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2220,156,0
1	31973703	rs1320578	T	C	869.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;ClippingRankSum=-0.779;DB;DP=14;FS=0.000;MQ=60.00;MQRankSum=1.270;QD=26.36;ReadPosRankSum=-0.189;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,14:14:42:608,42,0
1	32042540	rs7544140	G	A	1054.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MQ=60.00;QD=32.86;SOR=3.528	GT:AD:DP:GQ:PL	1/1:0,9:9:27:387,27,0
1	32045800	.	C	CTG	23.90	INDEL_LowQualityDepth;LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=-1.006;DP=4;FS=0.000;MQ=55.68;MQRankSum=-0.857;QD=0.54;ReadPosRankSum=0.261;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,1:4:13:13,0,93
1	32045802	.	C	CTCTCTCTG	496.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=-0.113;DP=5;FS=0.000;MQ=55.68;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-1.473;SOR=0.784	GT:AD:DP:GQ:PL	0/1:3,2:5:74:74,0,81
1	32045814	rs61778628	G	C	631.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=-0.559;DB;DP=5;FS=4.357;MQ=55.88;MQRankSum=-0.818;QD=13.74;ReadPosRankSum=-3.486;SOR=2.655	GT:AD:DP:GQ:PL	0/1:1,4:5:33:127,0,33
1	32045838	.	G	GTCTCTCTCTC	930.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=-0.554;DP=11;FS=0.000;MQ=56.86;MQRankSum=-1.332;QD=16.05;ReadPosRankSum=0.426;SOR=1.402	GT:AD:DP:GQ:PL	0/1:7,4:11:99:216,0,208
1	32084904	rs1056526	C	T	20619.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;FS=0.000;MQ=60.00;QD=33.64;SOR=0.891	GT:AD:DP:GQ:PL	1/1:0,144:144:99:6112,432,0
1	32085485	rs11575883	G	A	4620.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.535;ClippingRankSum=1.575;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=-0.756;QD=25.82;ReadPosRankSum=0.126;SOR=1.162	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1665,117,0
1	32086912	rs2280386	A	C	7569.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.000;MQ=60.00;QD=31.91;SOR=2.438	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2600,184,0
1	32090874	rs56017663	C	T	1085.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.118;ClippingRankSum=1.182;DB;DP=31;FS=4.670;MQ=60.00;MQRankSum=-2.081;QD=20.10;ReadPosRankSum=1.627;SOR=0.063	GT:AD:DP:GQ:PL	0/0:31,0:31:93:0,93,1358
1	32092525	rs2271933	A	G	8710.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MQ=60.00;QD=33.21;SOR=1.575	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2109,150,0
1	32092735	rs2176807	T	G	9141.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.000;MQ=60.00;QD=32.45;SOR=2.184	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2630,184,0
1	32092918	rs141988488	T	TTCC	14300.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;FS=0.000;MQ=60.36;QD=30.55;SOR=0.744	GT:AD:DP:GQ:PL	1/1:0,102:102:99:4589,310,0
1	32096265	rs1061770	A	G	8861.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.000;MQ=60.00;QD=32.49;SOR=7.092	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2754,198,0
1	32096746	rs10914458	T	C	4015.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MQ=60.00;QD=28.03;SOR=9.108	GT:AD:DP:GQ:PL	1/1:0,22:22:66:954,66,0
1	32100551	rs3835520	GA	G	6267.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.000;MQ=60.26;QD=30.43;SOR=0.800	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1993,186,0
1	32117779	rs2139539	C	T	376.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MQ=60.00;QD=26.22;SOR=1.402	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
1	32118160	rs1061392	C	A	6077.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.204;DB;DP=76;FS=19.331;MQ=60.00;MQRankSum=-0.844;QD=22.76;ReadPosRankSum=-0.187;SOR=3.066	GT:AD:DP:GQ:PL	1/1:4,72:76:99:1902,138,0
1	32119347	.	AACAC	A	3690.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=-1.405;DP=42;FS=1.042;MQ=60.35;MQRankSum=-0.984;QD=21.45;ReadPosRankSum=1.983;SOR=0.564	GT:AD:DP:GQ:PL	0/1:17,25:42:99:753,0,697
1	32119431	rs3817398	T	C	7425.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=-0.705;DB;DP=65;FS=1.610;MQ=60.10;MQRankSum=1.254;QD=29.15;ReadPosRankSum=0.132;SOR=0.520	GT:AD:DP:GQ:PL	0/1:30,35:65:99:1288,0,1053
1	32122164	rs7545321	A	G	3728.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.000;MQ=60.00;QD=25.61;SOR=4.688	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1424,102,0
1	32122424	.	TA	T	263.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.262;DP=22;FS=1.955;MQ=60.44;MQRankSum=-0.538;QD=3.61;ReadPosRankSum=-0.235;SOR=1.136	GT:AD:DP:GQ:PL	0/1:12,10:22:99:135,0,177
1	32127953	rs2271928	G	A	1534.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=-1.223;DB;DP=88;FS=14.043;MQ=60.00;MQRankSum=0.424;QD=17.43;ReadPosRankSum=2.110;SOR=1.664	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1565,0,1593
1	32128167	rs114016347	G	A	716.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;ClippingRankSum=-1.716;DB;DP=48;FS=4.633;MQ=60.00;MQRankSum=-1.253;QD=14.92;ReadPosRankSum=1.244;SOR=0.334	GT:AD:DP:GQ:PL	0/1:27,21:48:99:747,0,935
1	32128283	rs1568396	C	G	238.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=-0.859;DB;DP=17;FS=7.782;MQ=60.00;MQRankSum=0.186;QD=13.23;ReadPosRankSum=1.718;SOR=0.010	GT:AD:DP:GQ:PL	0/1:8,9:17:99:269,0,285
1	32131163	rs1356803	C	G	15572.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;FS=0.000;MQ=60.00;QD=29.41;SOR=1.135	GT:AD:DP:GQ:PL	1/1:0,111:111:99:4726,334,0
1	32134491	rs2271929	C	G	3837.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=-0.235;DB;DP=32;FS=5.414;MQ=60.00;MQRankSum=0.041;QD=34.26;ReadPosRankSum=1.038;SOR=1.702	GT:AD:DP:GQ:PL	0/1:17,15:32:99:524,0,617
1	32136168	rs2292990	G	C	9715.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.000;MQ=60.00;QD=34.31;SOR=3.564	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3132,225,0
1	32136398	rs1474182	G	A	7377.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=-0.483;DB;DP=79;FS=3.570;MQ=60.00;MQRankSum=-2.180;QD=33.53;ReadPosRankSum=-2.102;SOR=1.275	GT:AD:DP:GQ:PL	0/1:39,40:79:99:1468,0,1431
1	32138693	rs72662988	A	G	312.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=-1.320;DB;DP=20;FS=0.000;MQ=60.00;MQRankSum=0.513;QD=15.61;ReadPosRankSum=-0.185;SOR=0.716	GT:AD:DP:GQ:PL	0/1:10,10:20:99:343,0,368
1	32140733	rs2292993	C	T	10867.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.382;ClippingRankSum=2.244;DB;DP=93;FS=0.622;MQ=60.00;MQRankSum=-1.133;QD=28.81;ReadPosRankSum=0.314;SOR=0.795	GT:AD:DP:GQ:PL	0/1:44,49:93:99:1692,0,1581
1	32145009	rs4949461	C	T	9634.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;FS=0.000;MQ=60.00;QD=35.57;SOR=1.262	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3267,231,0
1	32146425	rs11590964	C	T	4101.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=-0.220;DB;DP=37;FS=11.295;MQ=60.00;MQRankSum=-1.237;QD=33.89;ReadPosRankSum=0.742;SOR=2.682	GT:AD:DP:GQ:PL	0/1:21,16:37:99:565,0,809
1	32146764	rs2297684	C	T	3100.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.530;DB;DP=30;FS=0.000;MQ=59.87;MQRankSum=0.747;QD=30.60;ReadPosRankSum=0.017;SOR=1.958	GT:AD:DP:GQ:PL	0/1:14,16:30:99:607,0,493
1	32148571	rs10737358	A	G	11354.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.000;MQ=60.00;QD=26.68;SOR=2.329	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3675,258,0
1	32149982	rs10914466	A	T	2637.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.002;ClippingRankSum=-1.943;DB;DP=50;FS=2.836;MQ=60.00;MQRankSum=0.038;QD=17.02;ReadPosRankSum=-0.518;SOR=0.908	GT:AD:DP:GQ:PL	0/1:21,29:50:99:1123,0,763
1	32155284	rs2297682	T	C	5069.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=-0.821;DB;DP=79;FS=0.888;MQ=60.00;MQRankSum=-1.228;QD=16.96;ReadPosRankSum=1.558;SOR=0.775	GT:AD:DP:GQ:PL	0/1:41,38:79:99:1391,0,1533
1	32155911	rs6425780	G	T	1719.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=-0.123;DB;DP=29;FS=0.000;MQ=60.00;MQRankSum=-0.067;QD=17.37;ReadPosRankSum=-1.158;SOR=0.498	GT:AD:DP:GQ:PL	0/1:14,15:29:99:584,0,1086
1	32155929	rs2297681	G	A	1880.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=-0.568;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=0.026;QD=16.65;ReadPosRankSum=0.793;SOR=0.945	GT:AD:DP:GQ:PL	0/1:16,15:31:99:581,0,1128
1	32156722	rs10914467	G	A	3395.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=-1.296;DB;DP=74;FS=3.752;MQ=59.95;MQRankSum=-0.361;QD=16.17;ReadPosRankSum=1.954;SOR=1.335	GT:AD:DP:GQ:PL	0/1:44,30:74:99:1023,0,1554
1	32156869	rs10798884	A	T	16884.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;FS=0.000;MQ=60.00;QD=28.93;SOR=1.059	GT:AD:DP:GQ:PL	1/1:0,134:134:99:5649,402,0
1	32156940	rs2297680	C	A	5105.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.687;ClippingRankSum=-0.958;DB;DP=156;FS=0.000;MQ=60.00;MQRankSum=-0.517;QD=17.60;ReadPosRankSum=0.632;SOR=0.715	GT:AD:DP:GQ:PL	0/0:156,0:156:99:0,468,6627
1	32157009	rs2297679	G	T	4650.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.069;ClippingRankSum=-0.670;DB;DP=158;FS=4.530;MQ=60.00;MQRankSum=-0.254;QD=17.03;ReadPosRankSum=0.438;SOR=1.018	GT:AD:DP:GQ:PL	0/0:158,0:158:99:0,474,6664
1	32157531	rs2297676	T	C	6887.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;ClippingRankSum=-0.591;DB;DP=117;FS=7.969;MQ=60.00;MQRankSum=-0.106;QD=18.32;ReadPosRankSum=0.405;SOR=1.144	GT:AD:DP:GQ:PL	0/1:50,67:117:99:2391,0,1818
1	32158304	rs2297675	A	G	6950.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.057;ClippingRankSum=0.589;DB;DP=157;FS=8.620;MQ=60.00;MQRankSum=1.118;QD=18.89;ReadPosRankSum=0.075;SOR=1.248	GT:AD:DP:GQ:PL	0/0:157,0:157:99:0,471,6619
1	32158374	rs3818788	T	C	15933.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.582;ClippingRankSum=-0.381;DB;DP=112;FS=1.023;MQ=60.00;MQRankSum=-1.405;QD=28.67;ReadPosRankSum=1.334;SOR=0.526	GT:AD:DP:GQ:PL	0/1:50,62:112:99:2331,0,1624
1	32159588	rs2275097	A	C	11465.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.240;ClippingRankSum=1.504;DB;DP=117;FS=5.681;MQ=60.00;MQRankSum=1.000;QD=33.43;ReadPosRankSum=-0.016;SOR=0.394	GT:AD:DP:GQ:PL	0/1:62,55:117:99:1918,0,2257
1	32160918	rs6656079	A	G	7835.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;ClippingRankSum=0.743;DB;DP=60;FS=9.964;MQ=60.00;MQRankSum=-1.312;QD=30.65;ReadPosRankSum=0.588;SOR=1.670	GT:AD:DP:GQ:PL	0/1:29,31:60:99:1141,0,1054
1	32163950	rs2297674	G	C	11749.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.735;DB;DP=105;FS=1.761;MQ=59.99;MQRankSum=0.322;QD=33.57;ReadPosRankSum=-1.127;SOR=0.560	GT:AD:DP:GQ:PL	0/1:62,43:105:99:1461,0,2241
1	32164206	rs2228550	T	G	6874.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.242;ClippingRankSum=-0.316;DB;DP=56;FS=0.884;MQ=60.00;MQRankSum=0.435;QD=34.37;ReadPosRankSum=0.614;SOR=0.860	GT:AD:DP:GQ:PL	0/1:33,23:56:99:832,0,1260
1	32165495	rs2228552	G	T	14076.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.728;ClippingRankSum=1.326;DB;DP=123;FS=0.000;MQ=60.00;MQRankSum=-0.510;QD=34.67;ReadPosRankSum=0.961;SOR=0.850	GT:AD:DP:GQ:PL	0/1:66,57:123:99:2052,0,2376
1	32167526	rs1815465	G	C	11315.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.000;MQ=60.00;QD=28.87;SOR=2.470	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2746,192,0
1	32193572	rs55637976	G	A	1566.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.966;DB;DP=40;FS=4.791;MQ=60.00;MQRankSum=0.360;QD=19.82;ReadPosRankSum=-0.088;SOR=0.230	GT:AD:DP:GQ:PL	0/1:20,20:40:99:728,0,694
1	32193647	rs1127100	T	C	7745.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;ClippingRankSum=1.094;DB;DP=60;FS=0.000;MQ=59.90;MQRankSum=-0.864;QD=38.27;ReadPosRankSum=0.867;SOR=0.647	GT:AD:DP:GQ:PL	0/1:29,31:60:99:1173,0,964
1	32194000	rs56137619	C	CAAGA	3160.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.108;ClippingRankSum=-2.477;DB;DP=70;FS=3.122;MQ=60.04;MQRankSum=-0.109;QD=17.27;ReadPosRankSum=0.240;SOR=0.504	GT:AD:DP:GQ:PL	0/0:70,0:70:99:0,211,4357
1	32194404	rs71006321	A	AACAC	690.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.000;MQ=59.27;QD=9.46;SOR=5.283	GT:AD:DP:GQ:PL	1/1:0,10:10:29:413,29,0
1	32196647	rs909001	C	G	2845.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.242;DB;DP=68;FS=27.861;MQ=60.00;MQRankSum=0.388;QD=17.67;ReadPosRankSum=0.534;SOR=2.012	GT:AD:DP:GQ:PL	0/0:68,0:68:99:0,205,2917
1	32203163	rs2271931	C	G	4223.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.696;ClippingRankSum=-0.342;DB;DP=90;FS=0.919;MQ=60.00;MQRankSum=1.426;QD=19.28;ReadPosRankSum=1.682;SOR=0.766	GT:AD:DP:GQ:PL	0/0:90,0:90:99:0,270,3807
1	32203218	rs2271932	C	A	2982.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.376;ClippingRankSum=-1.407;DB;DP=93;FS=1.075;MQ=60.00;MQRankSum=0.216;QD=14.34;ReadPosRankSum=-1.096;SOR=0.590	GT:AD:DP:GQ:PL	0/0:93,0:93:99:0,279,3925
1	32207581	rs2297600	T	G	5617.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.103;DB;DP=138;FS=1.864;MQ=60.00;MQRankSum=-2.238;QD=19.24;ReadPosRankSum=-0.286;SOR=0.853	GT:AD:DP:GQ:PL	0/0:138,0:138:99:0,415,5976
1	32221913	rs4949223	G	A	8513.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.308;DB;DP=216;FS=1.992;MQ=60.00;MQRankSum=-1.940;QD=16.86;ReadPosRankSum=-2.510;SOR=0.897	GT:AD:DP:GQ:PL	0/0:216,0:216:99:0,649,9230
1	32256086	rs13426	T	C	4042.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.201;DB;DP=55;FS=0.000;MQ=60.00;MQRankSum=-0.435;QD=23.78;ReadPosRankSum=0.791;SOR=0.543	GT:AD:DP:GQ:PL	0/1:28,27:55:99:914,0,996
1	32266026	rs552124	A	G	14614.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;FS=0.000;MQ=60.00;QD=29.25;SOR=1.645	GT:AD:DP:GQ:PL	1/1:0,100:100:99:4353,301,0
1	32280610	rs6664445	T	C	10786.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.342;DB;DP=132;FS=2.672;MQ=60.00;MQRankSum=-0.943;QD=25.56;ReadPosRankSum=-1.103;SOR=0.914	GT:AD:DP:GQ:PL	1/1:0,132:132:99:5579,396,0
1	32281404	rs12737935	A	G	90.36	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=-0.358;DB;DP=2;FS=0.000;MQ=60.00;MQRankSum=0.358;QD=22.59;ReadPosRankSum=-1.231;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,1:2:32:32,0,39
1	32371887	rs58880674	TG	T	89.11	PASS	AC=0;AF=0.00;AN=0;BaseQRankSum=1.380;ClippingRankSum=-0.720;DB;DP=6;FS=0.000;MQ=60.00;MQRankSum=-0.720;QD=14.85;ReadPosRankSum=1.380;SOR=1.609	GT	./.
1	32378540	rs10493050	G	T	3984.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=1.131;DB;DP=46;FS=0.532;MQ=60.17;MQRankSum=-1.030;QD=20.86;ReadPosRankSum=-0.639;SOR=0.638	GT:AD:DP:GQ:PL	0/1:24,22:46:99:831,0,879
1	32378545	rs144710236	TAG	T	2220.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.444;DB;DP=43;FS=0.000;MQ=60.22;MQRankSum=-0.300;QD=18.35;ReadPosRankSum=-0.831;SOR=0.682	GT:AD:DP:GQ:PL	0/1:23,20:43:99:720,0,1204
1	32379996	rs150609317	CTATT	C	3257.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;ClippingRankSum=-0.777;DB;DP=44;FS=0.000;MQ=60.39;MQRankSum=1.406;QD=16.71;ReadPosRankSum=0.425;SOR=0.676	GT:AD:DP:GQ:PL	0/1:28,16:44:99:580,0,1704
1	32502430	rs3738002	T	A	2382.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.834;DB;DP=39;FS=0.000;MQ=60.00;MQRankSum=1.946;QD=22.26;ReadPosRankSum=1.405;SOR=0.638	GT:AD:DP:GQ:PL	0/1:16,23:39:99:893,0,571
1	32538835	rs148773271	GGGACATT	G	972.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.210;DB;DP=27;FS=2.552;MQ=60.00;MQRankSum=-1.168;QD=13.32;ReadPosRankSum=-1.782;SOR=1.356	GT:AD:DP:GQ:PL	0/1:18,9:27:99:324,0,1544
1	32541440	.	G	GGT	326.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=-0.579;DP=16;FS=0.000;MQ=60.16;MQRankSum=0.715;QD=6.66;ReadPosRankSum=-0.502;SOR=0.515	GT:AD:DP:GQ:PL	0/1:12,4:16:86:86,0,354
1	32542507	rs4317856	C	A	3380.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.096;ClippingRankSum=-0.993;DB;DP=71;FS=1.866;MQ=60.00;MQRankSum=0.439;QD=20.74;ReadPosRankSum=1.258;SOR=0.906	GT:AD:DP:GQ:PL	0/1:31,40:71:99:1481,0,1013
1	32557486	rs744455	A	G	5333.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;ClippingRankSum=1.095;DB;DP=127;FS=2.738;MQ=60.00;MQRankSum=0.253;QD=16.67;ReadPosRankSum=-1.289;SOR=0.917	GT:AD:DP:GQ:PL	0/1:70,57:127:99:2090,0,2608
1	32557673	rs744454	C	T	3003.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.983;ClippingRankSum=-1.066;DB;DP=80;FS=4.394;MQ=60.00;MQRankSum=-0.581;QD=13.97;ReadPosRankSum=2.274;SOR=1.013	GT:AD:DP:GQ:PL	0/1:46,34:80:99:1269,0,1699
1	32568598	rs72666741	G	A	149.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=-0.324;DB;DP=7;FS=5.651;MQ=60.00;MQRankSum=-1.065;QD=12.43;ReadPosRankSum=-1.250;SOR=0.090	GT:AD:DP:GQ:PL	0/1:4,3:7:99:108,0,157
1	32623108	rs41311207	A	G	2512.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=-0.578;DB;DP=49;FS=2.435;MQ=60.00;MQRankSum=-0.828;QD=22.43;ReadPosRankSum=0.690;SOR=0.352	GT:AD:DP:GQ:PL	0/1:15,34:49:99:1314,0,498
1	32631609	.	AC	A	171.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=2.035;DP=32;FS=0.000;MQ=59.98;MQRankSum=-0.354;QD=2.38;ReadPosRankSum=-2.157;SOR=0.077	GT:AD:DP:GQ:PL	0/1:27,5:32:63:63,0,828
1	32646186	rs2273164	C	G	1216.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.158;DB;DP=50;FS=3.070;MQ=60.00;MQRankSum=-0.170;QD=13.66;ReadPosRankSum=1.460;SOR=0.150	GT:AD:DP:GQ:PL	0/1:30,20:50:99:722,0,1139
1	32647307	rs72666776	T	G	832.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=-0.062;DB;DP=29;FS=1.210;MQ=60.00;MQRankSum=-0.103;QD=13.21;ReadPosRankSum=2.449;SOR=0.387	GT:AD:DP:GQ:PL	0/1:20,9:29:99:313,0,695
1	32655957	rs72199915	TTCC	T	1097.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=-0.681;DB;DP=39;FS=6.363;MQ=60.13;MQRankSum=-0.036;QD=9.97;ReadPosRankSum=0.721;SOR=0.137	GT:AD:DP:GQ:PL	0/1:30,9:39:99:288,0,1326
1	32658062	rs55879873	G	GGT	12345.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MQ=60.56;QD=30.13;SOR=1.653	GT:AD:DP:GQ:PL	1/1:0,69:69:99:3086,213,0
1	32658447	rs16834916	G	A	1680.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.495;DB;DP=46;FS=4.985;MQ=60.00;MQRankSum=1.082;QD=18.46;ReadPosRankSum=0.888;SOR=1.241	GT:AD:DP:GQ:PL	0/1:18,28:46:99:978,0,652
1	32661059	rs16834922	T	C	2785.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.007;DB;DP=59;FS=5.889;MQ=60.00;MQRankSum=-0.653;QD=21.42;ReadPosRankSum=0.239;SOR=1.272	GT:AD:DP:GQ:PL	0/1:24,35:59:99:1300,0,845
1	32671030	rs2295116	C	T	2035.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=3.008;DB;DP=41;FS=3.800;MQ=60.00;MQRankSum=-0.840;QD=18.01;ReadPosRankSum=0.279;SOR=1.156	GT:AD:DP:GQ:PL	0/1:24,17:41:99:620,0,904
1	32671065	rs2295117	A	C	2505.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=1.852;DB;DP=49;FS=10.860;MQ=60.00;MQRankSum=-0.522;QD=20.70;ReadPosRankSum=0.203;SOR=1.516	GT:AD:DP:GQ:PL	0/1:23,26:49:99:987,0,863
1	32672784	rs56663136	G	C	6567.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;ClippingRankSum=0.606;DB;DP=139;FS=0.565;MQ=59.98;MQRankSum=-0.053;QD=19.26;ReadPosRankSum=2.096;SOR=0.618	GT:AD:DP:GQ:PL	0/1:63,76:139:99:3032,0,3154
1	32672785	rs60559680	A	T	6567.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=-0.122;DB;DP=140;FS=0.560;MQ=59.98;MQRankSum=0.556;QD=19.20;ReadPosRankSum=2.000;SOR=0.647	GT:AD:DP:GQ:PL	0/1:63,77:140:99:3032,0,3154
1	32672908	rs3903683	T	G	6775.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=1.678;DB;DP=155;FS=2.672;MQ=60.00;MQRankSum=0.122;QD=18.36;ReadPosRankSum=0.230;SOR=0.936	GT:AD:DP:GQ:PL	0/1:76,79:155:99:2902,0,2794
1	32680551	rs72666785	C	T	2168.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.791;DB;DP=45;FS=1.118;MQ=60.00;MQRankSum=-1.965;QD=17.77;ReadPosRankSum=-0.455;SOR=0.430	GT:AD:DP:GQ:PL	0/1:24,21:45:99:702,0,916
1	32680606	rs72666786	T	C	2009.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.186;DB;DP=38;FS=0.000;MQ=60.00;MQRankSum=-0.426;QD=19.51;ReadPosRankSum=0.346;SOR=0.394	GT:AD:DP:GQ:PL	0/0:38,0:38:99:0,114,1611
1	32682384	rs479014	G	A	3477.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.080;ClippingRankSum=-0.697;DB;DP=92;FS=3.259;MQ=60.00;MQRankSum=0.356;QD=19.00;ReadPosRankSum=2.177;SOR=0.934	GT:AD:DP:GQ:PL	0/0:92,0:92:99:0,277,4031
1	32682962	rs41311189	C	A	4747.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=-1.084;DB;DP=105;FS=2.472;MQ=60.00;MQRankSum=-1.429;QD=19.78;ReadPosRankSum=-0.538;SOR=0.560	GT:AD:DP:GQ:PL	0/1:48,57:105:99:2079,0,1740
1	32686594	rs3738001	A	G	1189.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=-1.375;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=1.562;QD=16.75;ReadPosRankSum=1.154;SOR=0.336	GT:AD:DP:GQ:PL	0/1:16,15:31:99:470,0,577
1	32687777	rs17523023	A	G	2375.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=-1.394;DB;DP=55;FS=0.000;MQ=60.00;MQRankSum=-0.507;QD=21.02;ReadPosRankSum=0.700;SOR=0.720	GT:AD:DP:GQ:PL	0/1:28,27:55:99:1008,0,1057
1	32689521	rs16834931	A	G	2093.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.732;ClippingRankSum=-0.836;DB;DP=43;FS=4.877;MQ=60.00;MQRankSum=0.520;QD=18.69;ReadPosRankSum=0.926;SOR=1.298	GT:AD:DP:GQ:PL	0/1:23,20:43:99:749,0,854
1	32689857	rs589034	A	G	7835.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=1.329;DB;DP=56;FS=0.691;MQ=60.00;MQRankSum=0.171;QD=30.71;ReadPosRankSum=0.671;SOR=0.628	GT:AD:DP:GQ:PL	0/1:33,23:56:99:829,0,1257
1	32691617	rs72666791	G	C	2066.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=-0.057;DB;DP=47;FS=4.173;MQ=60.00;MQRankSum=1.002;QD=19.31;ReadPosRankSum=0.291;SOR=0.090	GT:AD:DP:GQ:PL	0/1:21,26:47:99:978,0,733
1	32692168	.	AT	A	694.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.760;DP=27;FS=0.000;MQ=60.33;MQRankSum=0.621;QD=4.29;ReadPosRankSum=-0.651;SOR=1.068	GT:AD:DP:GQ:PL	0/1:11,16:27:99:235,0,165
1	32694819	rs72666792	A	G	1919.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=1.465;DB;DP=36;FS=2.371;MQ=60.00;MQRankSum=2.092;QD=19.79;ReadPosRankSum=1.119;SOR=0.464	GT:AD:DP:GQ:PL	0/1:12,24:36:99:868,0,408
1	32696628	rs72666795	A	C	3961.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;ClippingRankSum=0.315;DB;DP=95;FS=3.833;MQ=60.00;MQRankSum=0.155;QD=16.71;ReadPosRankSum=1.900;SOR=0.508	GT:AD:DP:GQ:PL	0/1:48,47:95:99:1703,0,1809
1	32697063	rs1137921	T	C	44.24	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.216;ClippingRankSum=0.300;DB;DP=5;FS=0.000;MQ=59.41;MQRankSum=-2.336;QD=8.85;ReadPosRankSum=0.060;SOR=0.022	GT:AD:DP:GQ:PL	0/0:5,0:5:15:0,15,297
1	32697071	rs1137947	C	A	110.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750;ClippingRankSum=0.350;DB;DP=4;FS=0.000;MQ=59.35;MQRankSum=-0.850;QD=12.24;ReadPosRankSum=-2.350;SOR=0.093	GT:AD:DP:GQ:PL	0/1:3,1:4:27:27,0,211
1	32713199	rs2291063	A	G	3070.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;ClippingRankSum=1.792;DB;DP=73;FS=2.499;MQ=60.00;MQRankSum=-1.189;QD=18.72;ReadPosRankSum=1.996;SOR=0.535	GT:AD:DP:GQ:PL	0/1:32,41:73:99:1525,0,1151
1	32860161	rs547329	T	C	10400.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.000;MQ=60.00;QD=27.64;SOR=6.552	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2499,177,0
1	33001662	rs12133233	C	A	771.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.897;ClippingRankSum=-0.336;DB;DP=12;FS=2.174;MQ=60.00;MQRankSum=-0.363;QD=11.69;ReadPosRankSum=0.834;SOR=0.242	GT:AD:DP:GQ:PL	0/1:11,1:12:9:9,0,424
1	33002066	.	C	T	879.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=0.232;DP=32;FS=21.705;MQ=60.00;MQRankSum=-0.332;QD=9.78;ReadPosRankSum=-3.167;SOR=0.967	GT:AD:DP:GQ:PL	0/1:18,14:32:99:373,0,588
1	33019254	rs12134736	A	G	129.60	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.937;ClippingRankSum=-0.550;DB;DP=1;FS=6.021;MQ=60.00;MQRankSum=-0.550;QD=21.60;ReadPosRankSum=0.550;SOR=3.221	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,45
1	33060834	rs11327743	AT	A	3185.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.077;DB;DP=83;FS=2.961;MQ=60.00;MQRankSum=1.106;QD=9.86;ReadPosRankSum=0.942;SOR=1.284	GT:AD:DP:GQ:PL	0/1:43,40:83:99:973,0,1061
1	33065947	rs704886	G	C	19647.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;FS=0.000;MQ=60.00;QD=24.40;SOR=2.457	GT:AD:DP:GQ:PL	1/1:0,134:134:99:5765,403,0
1	33087567	.	GA	G	110.89	INDEL_LowQualityDepth	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;ClippingRankSum=-0.260;DP=25;FS=0.000;MQ=59.88;MQRankSum=-0.863;QD=0.96;ReadPosRankSum=0.595;SOR=0.681	GT:AD:DP:GQ:PL	0/1:20,5:25:28:28,0,371
1	33099798	rs704877	A	G	2456.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.806;DB;DP=49;FS=1.534;MQ=60.00;MQRankSum=1.845;QD=28.90;ReadPosRankSum=0.598;SOR=0.364	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2118
1	33116206	rs41265851	A	T	1635.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.390;ClippingRankSum=0.744;DB;DP=112;FS=8.161;MQ=60.00;MQRankSum=-0.776;QD=16.86;ReadPosRankSum=-1.340;SOR=0.312	GT:AD:DP:GQ:PL	0/0:112,0:112:99:0,337,4695
1	33117071	rs583114	T	G	4795.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MQ=60.00;QD=29.41;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1653,124,0
1	33127730	rs1085416	T	C	3457.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.000;MQ=60.00;QD=35.95;SOR=4.514	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1023,72,0
1	33127764	rs138948889	C	T	1114.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.136;DB;DP=30;FS=7.949;MQ=60.00;MQRankSum=-0.519;QD=15.69;ReadPosRankSum=-0.328;SOR=1.590	GT:AD:DP:GQ:PL	0/0:30,0:30:90:0,90,1277
1	33133968	rs2762904	T	C	8537.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;FS=0.000;MQ=57.91;QD=28.66;SOR=0.849	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2082,147,0
1	33134774	rs359955	A	C	5246.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.721;ClippingRankSum=-0.017;DB;DP=70;FS=3.769;MQ=60.00;MQRankSum=0.447;QD=26.10;ReadPosRankSum=-0.477;SOR=0.519	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2950,210,0
1	33134989	rs359956	A	G	10437.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;FS=0.000;MQ=60.00;QD=29.01;SOR=1.809	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2925,215,0
1	33138516	rs607202	A	C	14856.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;FS=0.000;MQ=59.81;QD=32.87;SOR=1.262	GT:AD:DP:GQ:PL	1/1:0,105:105:99:4414,316,0
1	33138605	rs1320511	T	C	8489.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.000;MQ=60.00;QD=31.68;SOR=3.062	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2250,159,0
1	33139043	rs55707864	C	T	5538.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=62.53;QD=28.80;SOR=1.262	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1634,114,0
1	33139044	rs11373803	T	TC	5529.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MQ=62.53;QD=27.44;SOR=1.262	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1634,114,0
1	33147143	rs360510	C	T	3629.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.000;MQ=60.00;QD=36.01;SOR=8.885	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1232,84,0
1	33160878	rs360042	C	T	20881.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;FS=0.000;MQ=60.00;QD=32.14;SOR=1.158	GT:AD:DP:GQ:PL	1/1:0,157:157:99:6725,471,0
1	33161212	rs360041	T	C	33157.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=253;FS=0.000;MQ=60.00;QD=23.34;SOR=1.567	GT:AD:DP:GQ:PL	1/1:0,253:253:99:10767,759,0
1	33233323	rs360523	A	G	12803.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;FS=0.000;MQ=60.00;QD=32.07;SOR=4.928	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3854,276,0
1	33234110	rs111335810	C	T	518.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.379;DB;DP=33;FS=5.666;MQ=60.00;MQRankSum=1.258;QD=15.70;ReadPosRankSum=1.753;SOR=0.029	GT:AD:DP:GQ:PL	0/1:18,15:33:99:549,0,658
1	33234136	rs360522	T	C	5072.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.000;MQ=60.00;QD=33.65;SOR=4.768	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1806,123,0
1	33234153	rs3737993	G	A	2413.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;ClippingRankSum=-0.690;DB;DP=42;FS=5.916;MQ=60.00;MQRankSum=-0.151;QD=19.01;ReadPosRankSum=0.329;SOR=1.630	GT:AD:DP:GQ:PL	0/1:21,21:42:99:772,0,765
1	33234190	rs55919953	A	T	1848.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.272;ClippingRankSum=1.480;DB;DP=62;FS=5.588;MQ=60.00;MQRankSum=-0.539;QD=17.11;ReadPosRankSum=1.172;SOR=0.371	GT:AD:DP:GQ:PL	0/0:62,0:62:99:0,187,2617
1	33235626	rs3737995	G	A	4402.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.387;ClippingRankSum=0.458;DB;DP=106;FS=0.423;MQ=59.94;MQRankSum=-1.186;QD=19.65;ReadPosRankSum=0.949;SOR=0.657	GT:AD:DP:GQ:PL	0/1:55,51:106:99:1904,0,1956
1	33235651	rs12730560	A	G	4228.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.635;ClippingRankSum=-0.455;DB;DP=117;FS=6.843;MQ=59.94;MQRankSum=-1.398;QD=17.54;ReadPosRankSum=0.593;SOR=0.440	GT:AD:DP:GQ:PL	0/0:117,0:117:99:0,352,5134
1	33245802	rs699005	C	G	3611.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.339;DB;DP=99;FS=1.444;MQ=60.00;MQRankSum=0.297;QD=16.72;ReadPosRankSum=-0.708;SOR=0.810	GT:AD:DP:GQ:PL	0/0:99,0:99:99:0,297,4150
1	33247797	rs699004	G	T	299.17	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.361;ClippingRankSum=-0.915;DB;DP=11;FS=0.000;MQ=60.00;MQRankSum=0.804;QD=21.37;ReadPosRankSum=0.361;SOR=1.148	GT:AD:DP:GQ:PL	0/0:11,0:11:33:0,33,460
1	33256645	rs881393	G	C	1302.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.152;ClippingRankSum=-0.576;DB;DP=42;FS=0.000;MQ=60.00;MQRankSum=0.178;QD=15.14;ReadPosRankSum=1.785;SOR=0.161	GT:AD:DP:GQ:PL	0/0:42,0:42:99:0,125,1725
1	33256884	rs1765223	C	A	2192.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.825;ClippingRankSum=1.649;DB;DP=63;FS=6.465;MQ=60.00;MQRankSum=1.041;QD=15.55;ReadPosRankSum=1.682;SOR=0.351	GT:AD:DP:GQ:PL	0/0:63,0:63:99:0,189,2625
1	33276424	rs4951787	G	A	12719.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.000;MQ=60.00;QD=30.44;SOR=1.163	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3433,246,0
1	33282775	rs72654020	C	A	6198.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-4.143;ClippingRankSum=0.727;DB;DP=166;FS=1.198;MQ=60.00;MQRankSum=-0.420;QD=15.65;ReadPosRankSum=1.130;SOR=0.544	GT:AD:DP:GQ:PL	0/0:166,0:166:99:0,498,7067
1	33293748	rs10753266	T	C	3700.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;FS=0.000;MQ=60.00;QD=28.22;SOR=8.955	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1402,99,0
1	33299816	rs4951773	A	T	11099.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.000;MQ=60.00;QD=35.10;SOR=11.098	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3385,235,0
1	33318561	rs702836	T	C	5271.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.000;MQ=60.00;QD=31.62;SOR=6.374	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1315,90,0
1	33318634	rs785274	G	A	7696.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.000;MQ=60.00;QD=28.15;SOR=1.731	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2288,159,0
1	33330432	rs1284368	A	G	9213.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.000;MQ=60.00;QD=32.12;SOR=3.663	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2912,210,0
1	33333104	rs726344	G	A	2537.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.773;ClippingRankSum=-1.330;DB;DP=46;FS=6.052;MQ=60.00;MQRankSum=0.503;QD=16.48;ReadPosRankSum=2.484;SOR=0.168	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1993
1	33360234	rs1053542	C	T	2309.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.899;DB;DP=49;FS=1.747;MQ=60.00;MQRankSum=-0.844;QD=17.23;ReadPosRankSum=0.243;SOR=0.270	GT:AD:DP:GQ:PL	0/0:49,0:49:99:0,147,2054
1	33360343	rs1053522	G	A	2683.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=3.185;ClippingRankSum=0.335;DB;DP=75;FS=1.219;MQ=60.00;MQRankSum=1.247;QD=17.77;ReadPosRankSum=1.266;SOR=0.804	GT:AD:DP:GQ:PL	0/0:75,0:75:99:0,225,3100
1	33366704	rs114172030	T	A	2000.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.065;ClippingRankSum=-0.570;DB;DP=33;FS=7.871;MQ=60.00;MQRankSum=-0.822;QD=19.80;ReadPosRankSum=0.712;SOR=0.750	GT:AD:DP:GQ:PL	0/0:33,0:33:99:0,99,1391
1	33402172	rs8040	C	T	604.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=-0.265;DB;DP=17;FS=18.284;MQ=60.00;MQRankSum=-0.772;QD=13.15;ReadPosRankSum=0.794;SOR=0.012	GT:AD:DP:GQ:PL	0/1:9,8:17:99:233,0,320
1	33402334	.	G	GA	486.88	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-2.567;ClippingRankSum=0.096;DP=31;FS=6.504;MQ=60.07;MQRankSum=-1.428;QD=4.35;ReadPosRankSum=-1.930;SOR=0.139	GT:AD:DP:GQ:PL	0/0:29,2:31:45:0,45,510
1	33402515	rs35462688	C	T	4919.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.257;DB;DP=89;FS=0.397;MQ=60.00;MQRankSum=1.160;QD=17.95;ReadPosRankSum=2.936;SOR=0.655	GT:AD:DP:GQ:PL	0/0:89,0:89:99:0,266,3662
1	33402542	rs35756506	G	C	5484.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=2.675;ClippingRankSum=-0.519;DB;DP=115;FS=1.150;MQ=60.00;MQRankSum=-0.141;QD=18.16;ReadPosRankSum=0.219;SOR=0.572	GT:AD:DP:GQ:PL	0/0:115,0:115:99:0,344,4660
1	33408138	rs1149128	T	G	2154.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.947;ClippingRankSum=-0.932;DB;DP=74;FS=1.714;MQ=60.00;MQRankSum=-0.655;QD=15.96;ReadPosRankSum=2.044;SOR=0.961	GT:AD:DP:GQ:PL	0/0:74,0:74:99:0,222,3174
1	33409551	rs194644	C	T	5329.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=-0.128;DB;DP=45;FS=2.006;MQ=60.00;MQRankSum=2.038;QD=34.60;ReadPosRankSum=2.043;SOR=1.618	GT:AD:DP:GQ:PL	0/1:27,18:45:99:639,0,1002
1	33409693	rs194645	G	A	3570.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.338;DB;DP=48;FS=10.658;MQ=60.00;MQRankSum=-0.557;QD=16.92;ReadPosRankSum=1.247;SOR=0.311	GT:AD:DP:GQ:PL	0/1:25,23:48:99:871,0,950
1	33415409	rs11408991	G	GT	2245.12	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.672;ClippingRankSum=-0.699;DB;DP=77;FS=13.119;MQ=60.33;MQRankSum=0.982;QD=14.77;ReadPosRankSum=-2.286;SOR=0.190	GT:AD:DP:GQ:PL	0/0:77,0:77:99:0,232,2881
1	33415466	rs7545739	T	C	1971.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.413;DB;DP=54;FS=0.000;MQ=60.07;MQRankSum=-0.945;QD=19.91;ReadPosRankSum=1.089;SOR=0.533	GT:AD:DP:GQ:PL	0/0:54,0:54:99:0,163,2376
1	33430102	rs113840389	T	G	553.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MQ=60.00;QD=29.17;SOR=5.421	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
1	33476385	rs76881767	C	G	59.13	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=-0.093;DB;DP=43;FS=13.451;MQ=58.90;MQRankSum=-4.359;QD=1.38;ReadPosRankSum=4.099;SOR=0.067	GT:AD:DP:GQ:PL	0/1:38,5:43:90:90,0,2484
1	33476387	rs201842558	C	T	50.13	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=-0.048;DB;DP=44;FS=13.566;MQ=58.90;MQRankSum=-4.499;QD=1.14;ReadPosRankSum=3.894;SOR=0.066	GT:AD:DP:GQ:PL	0/1:39,5:44:81:81,0,2610
1	33476396	rs79824855	G	A	37.13	SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=-0.145;DB;DP=51;FS=8.834;MQ=59.04;MQRankSum=-5.249;QD=0.73;ReadPosRankSum=3.288;SOR=0.107	GT:AD:DP:GQ:PL	0/1:46,5:51:68:68,0,2733
1	33476404	rs76230073	T	G	22.16	LowQual;SNP_LowQualityDepth;SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0.869;DB;DP=57;FS=7.798;MQ=59.07;MQRankSum=-5.076;QD=0.39;ReadPosRankSum=2.852;SOR=0.152	GT:AD:DP:GQ:PL	0/1:52,5:57:53:53,0,2811
1	33485789	.	AACACACAC	A	1625.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=-1.826;DP=12;FS=0.000;MQ=58.67;MQRankSum=-0.155;QD=16.58;ReadPosRankSum=1.325;SOR=1.765	GT:AD:DP:GQ:PL	0/1:10,2:12:50:50,0,489
1	33497070	rs1012884	G	A	7167.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.000;MQ=60.00;QD=31.01;SOR=7.403	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2338,160,0
1	33502184	rs11591185	G	A	599.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.116;ClippingRankSum=-0.568;DB;DP=15;FS=3.798;MQ=60.00;MQRankSum=-0.434;QD=23.04;ReadPosRankSum=0.910;SOR=0.327	GT:AD:DP:GQ:PL	0/0:15,0:15:45:0,45,662
1	33547768	rs1871322	T	C	2991.90	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.071;DB;DP=58;FS=9.422;MQ=60.00;MQRankSum=0.976;QD=26.95;ReadPosRankSum=2.337;SOR=2.222	GT:AD:DP:GQ:PL	0/0:58,0:58:99:0,174,2505
1	33559332	.	C	CT	26.69	INDEL_LowQualityDepth;LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.278;DP=5;FS=0.000;MQ=60.00;MQRankSum=-0.278;QD=1.21;ReadPosRankSum=0.278;SOR=1.112	GT:AD:DP:GQ:PL	0/1:2,3:5:31:51,0,31
1	33560338	rs804428	A	G	10031.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.000;MQ=60.00;QD=34.52;SOR=3.209	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2724,192,0
1	33562175	rs72656216	C	A	1011.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=-0.780;DB;DP=55;FS=3.955;MQ=60.00;MQRankSum=-0.689;QD=18.38;ReadPosRankSum=1.063;SOR=0.076	GT:AD:DP:GQ:PL	0/1:26,29:55:99:1042,0,963
1	33586199	rs2075985	T	G	56.87	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=1;FS=0.000;MQ=60.00;MQRankSum=0.736;QD=28.44;ReadPosRankSum=0.736;SOR=1.179	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,45
1	33631069	rs2306257	C	A	428.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.365;DB;DP=23;FS=1.771;MQ=60.00;MQRankSum=-0.915;QD=22.53;ReadPosRankSum=0.960;SOR=0.317	GT:AD:DP:GQ:PL	0/0:23,0:23:69:0,69,923
1	33641932	rs604941	A	G	8841.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;FS=0.000;MQ=60.00;QD=31.48;SOR=1.125	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2457,174,0
1	33642152	rs643402	C	T	2863.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.074;DB;DP=23;FS=2.435;MQ=60.00;MQRankSum=-2.482;QD=31.81;ReadPosRankSum=-0.280;SOR=0.333	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1008,69,0
1	33646950	rs622407	A	G	13118.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.203;DB;DP=91;FS=1.923;MQ=60.00;MQRankSum=0.915;QD=30.52;ReadPosRankSum=2.553;SOR=0.863	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3842,273,0
1	33741587	rs6692274	C	T	1553.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=1.953;ClippingRankSum=-1.296;DB;DP=31;FS=0.000;MQ=60.00;MQRankSum=0.441;QD=17.65;ReadPosRankSum=-0.177;SOR=0.824	GT:AD:DP:GQ:PL	0/0:31,0:31:92:0,92,1278
1	33741615	rs7514338	T	A	728.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.454;DB;DP=44;FS=1.677;MQ=60.00;MQRankSum=-0.753;QD=16.55;ReadPosRankSum=2.540;SOR=0.330	GT:AD:DP:GQ:PL	0/1:22,22:44:99:759,0,839
1	33741787	rs12743549	G	A	1098.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=-0.230;ClippingRankSum=1.379;DB;DP=91;FS=3.347;MQ=60.00;MQRankSum=-0.241;QD=13.23;ReadPosRankSum=1.671;SOR=0.428	GT:AD:DP:GQ:PL	0/0:91,0:91:99:0,273,3872
1	33741895	rs12743740	G	A	2028.13	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.355;ClippingRankSum=1.421;DB;DP=78;FS=1.188;MQ=60.00;MQRankSum=-0.693;QD=21.58;ReadPosRankSum=0.994;SOR=0.578	GT:AD:DP:GQ:PL	0/0:78,0:78:99:0,234,3302
1	33742228	rs4475712	T	C	3217.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;FS=0.000;MQ=60.00;QD=30.87;SOR=3.967	GT:AD:DP:GQ:PL	1/1:0,31:31:92:1287,92,0
1	33746163	rs10914676	T	C	4533.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;FS=0.000;MQ=60.00;QD=28.04;SOR=7.186	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1351,96,0
1	33760743	rs4641276	T	C	9843.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.753;ClippingRankSum=1.629;DB;DP=87;FS=2.629;MQ=59.94;MQRankSum=-1.572;QD=32.92;ReadPosRankSum=0.462;SOR=0.521	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3589,260,0
1	33766410	rs142704801	TGGAGAA	T	223.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.742;DB;DP=3;FS=0.000;MQ=60.00;MQRankSum=-0.742;QD=31.87;ReadPosRankSum=0.742;SOR=1.108	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
1	33777524	rs6679416	T	C	6080.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MQ=60.00;QD=31.44;SOR=6.651	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1915,135,0
1	33778063	rs60103055	G	A	2248.16	PASS	AC=0;AF=0.00;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.066;DB;DP=46;FS=3.782;MQ=60.00;MQRankSum=-0.351;QD=18.73;ReadPosRankSum=2.535;SOR=1.041	GT:AD:DP:GQ:PL	0/0:46,0:46:99:0,138,1909
1	33778226	rs12563102	G	A	3099.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;ClippingRankSum=-2.043;DB;DP=44;FS=0.000;MQ=60.00;MQRankSum=-0.059;QD=17.71;ReadPosRankSum=2.534;SOR=0.689	GT:AD:DP:GQ:PL	0/1: