##fileformat=VCFv4.2
##FILTER=<ID=FAIL,Description="QD < 2.0 || FS > 60.0 || MQ < 40.0 || DP < 10 || MQRankSum < -12.5 || ReadPosRankSum < -8.0">
##FILTER=<ID=LOW_VQSLOD,Description="VQSLOD < 0.0">
##FILTER=<ID=LowQual,Description="Low quality">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##GATKCommandLine.ApplyRecalibration=<ID=ApplyRecalibration,Version=3.6-0-g89b7209,Date="Wed Mar 11 23:36:45 IST 2020",Epoch=1583950005541,CommandLineOptions="analysis_type=ApplyRecalibration input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data1/genomes/Hg19_genome/Homo_sapiens_sequence_hg19.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=20 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false input=[(RodBinding name=input source=vcf_files/PA_3_raw_variants.vcf)] recal_file=(RodBinding name=recal_file source=vcf_files/PA_3_recalibrate.recal) tranches_file=vcf_files/PA_3_recalibrate_SNP.tranches out=/data1/Data/DR_Arundhati_12_sample_mapping/GATK_snps/vcf_files/PA_3.recalibrated.filtered.vcf ts_filter_level=null useAlleleSpecificAnnotations=false lodCutoff=0.0 ignore_filter=null ignore_all_filters=false excludeFiltered=false mode=BOTH filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##GATKCommandLine.UnifiedGenotyper=<ID=UnifiedGenotyper,Version=3.6-0-g89b7209,Date="Wed Mar 11 22:13:28 IST 2020",Epoch=1583945008580,CommandLineOptions="analysis_type=UnifiedGenotyper input_file=[PA_3.sorted.rmdup.realigned.recal.bam] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data1/genomes/Hg19_genome/Homo_sapiens_sequence_hg19.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false genotype_likelihoods_model=BOTH pcr_error_rate=1.0E-4 computeSLOD=true pair_hmm_implementation=LOGLESS_CACHING min_base_quality_score=17 max_deletion_fraction=0.05 min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 annotateNDA=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false dbsnp=(RodBinding name=dbsnp source=/data1/genomes/Hg19_genome/Homo_sapiens_dbsnp_138_ensembl_final.vcf) comp=[] out=/data1/Data/DR_Arundhati_12_sample_mapping/GATK_snps/vcf_files/PA_3_raw_variants.vcf onlyEmitSamples=[] debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##GATKCommandLine.VariantFiltration=<ID=VariantFiltration,Version=3.6-0-g89b7209,Date="Wed Mar 11 23:37:41 IST 2020",Epoch=1583950061599,CommandLineOptions="analysis_type=VariantFiltration input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data1/genomes/Hg19_genome/Homo_sapiens_sequence_hg19.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=vcf_files/PA_3.recalibrated.filtered.vcf) mask=(RodBinding name= source=UNBOUND) out=/data1/Data/DR_Arundhati_12_sample_mapping/GATK_snps/vcf_files/PA_3_filt_10x.vcf filterExpression=[QD < 2.0 || FS > 60.0 || MQ < 40.0 || DP < 10 || MQRankSum < -12.5 || ReadPosRankSum < -8.0] filterName=[FAIL] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=0 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false invertFilterExpression=false invertGenotypeFilterExpression=false setFilteredGtToNocall=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=NEGATIVE_TRAIN_SITE,Number=0,Type=Flag,Description="This variant was used to build the negative training set of bad variants">
##INFO=<ID=POSITIVE_TRAIN_SITE,Number=0,Type=Flag,Description="This variant was used to build the positive training set of good variants">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=RPA,Number=.,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)">
##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SB,Number=1,Type=Float,Description="Strand Bias">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=STR,Number=0,Type=Flag,Description="Variant is a short tandem repeat">
##INFO=<ID=VQSLOD,Number=1,Type=Float,Description="Log odds of being a true variant versus being false under the trained gaussian mixture model">
##INFO=<ID=culprit,Number=1,Type=String,Description="The annotation which was the worst performing in the Gaussian mixture model, likely the reason why the variant was filtered out">
##contig=<ID=1,length=249250621,assembly=hg19>
##contig=<ID=2,length=243199373,assembly=hg19>
##contig=<ID=3,length=198022430,assembly=hg19>
##contig=<ID=4,length=191154276,assembly=hg19>
##contig=<ID=5,length=180915260,assembly=hg19>
##contig=<ID=6,length=171115067,assembly=hg19>
##contig=<ID=7,length=159138663,assembly=hg19>
##contig=<ID=8,length=146364022,assembly=hg19>
##contig=<ID=9,length=141213431,assembly=hg19>
##contig=<ID=10,length=135534747,assembly=hg19>
##contig=<ID=11,length=135006516,assembly=hg19>
##contig=<ID=12,length=133851895,assembly=hg19>
##contig=<ID=13,length=115169878,assembly=hg19>
##contig=<ID=14,length=107349540,assembly=hg19>
##contig=<ID=15,length=102531392,assembly=hg19>
##contig=<ID=16,length=90354753,assembly=hg19>
##contig=<ID=17,length=81195210,assembly=hg19>
##contig=<ID=18,length=78077248,assembly=hg19>
##contig=<ID=19,length=59128983,assembly=hg19>
##contig=<ID=20,length=63025520,assembly=hg19>
##contig=<ID=21,length=48129895,assembly=hg19>
##contig=<ID=22,length=51304566,assembly=hg19>
##contig=<ID=X,length=155270560,assembly=hg19>
##contig=<ID=Y,length=59373566,assembly=hg19>
##contig=<ID=MT,length=16569,assembly=hg19>
##reference=file:///data1/genomes/Hg19_genome/Homo_sapiens_sequence_hg19.fa
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	PA_3
1	14907	rs79585140	A	G	857.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=44.39;MQ0=2;MQRankSum=-1.224;QD=10.09;ReadPosRankSum=1.684;SB=-4.690e+02;SOR=0.569;VQSLOD=0.487;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,35:85:99:886,0,1185
1	14930	rs75454623	A	G	950.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.1879;MLEAC=1;MLEAF=0.500;MQ=46.22;MQ0=2;MQRankSum=-2.647;QD=11.88;ReadPosRankSum=0.145;SB=-4.450e+02;SOR=0.708;VQSLOD=0.151;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,38:80:99:979,0,993
1	234481	rs8179403	T	A	286.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=1;QD=28.68;SB=-7.997e+01;SOR=2.093;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:315,24,0
1	668374	rs138476838	G	A	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.71;MQ0=1;MQRankSum=-3.798;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=0.323;SB=-1.350e+02;SOR=0.591;VQSLOD=2.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,15:33:99:317,0,451
1	762273	rs3115849	G	A	2323.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=3;POSITIVE_TRAIN_SITE;QD=29.79;SB=-1.211e+03;SOR=0.719;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2352,181,0
1	792263	rs1044922	A	G	2227.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=10;POSITIVE_TRAIN_SITE;QD=24.75;SB=-7.550e+02;SOR=2.245;VQSLOD=3.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,88:90:99:2256,181,0
1	792480	rs2905036	C	T	1708.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-5.910e+02;SOR=2.001;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1737,135,0
1	808631	.	G	A	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.405;SB=-9.732e-01;SOR=2.303;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:135,0,139
1	808922	.	G	A	2077.77	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=32.98;SB=-1.012e+03;SOR=1.179;VQSLOD=4.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2106,154,0
1	824094	rs72890760	G	A	343.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.37;MQ0=1;MQRankSum=-0.795;QD=22.93;ReadPosRankSum=1.253;SB=-2.161e+02;SOR=0.283;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,14:15:5:371,0,5
1	824115	rs77649307	A	C	340.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=30.98;SB=-1.981e+02;SOR=0.859;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:369,30,0
1	866319	rs9988021	G	A	592.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-2.890e+02;SOR=1.292;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:621,45,0
1	871334	rs4072383	G	T	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.56;ReadPosRankSum=-0.568;SB=-4.076e+01;SOR=0.048;VQSLOD=6.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:119,0,270
1	874950	rs33939111	T	TCCCTGGAGGACC	1345.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.64;SB=-3.425e+02;SOR=1.609;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:1383,30,0
1	876499	rs4372192	A	G	374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-8.197e+01;SOR=1.981;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:403,30,0
1	879676	rs6605067	G	A	899.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=0.00;SOR=6.358;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:928,69,0
1	879687	rs2839	T	C	523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=0.00;SOR=5.421;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:552,42,0
1	880238	rs3748592	A	G	1314.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.97;SB=-9.070e+02;SOR=0.735;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:96:1343,96,0
1	881627	rs2272757	G	A	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=0.406;SB=-1.340e+02;SOR=0.593;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:31:99:367,0,513
1	883625	rs4970378	A	G	634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-3.950e+02;SOR=0.874;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:663,48,0
1	884091	.	C	G	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;DP=50;Dels=0.00;ExcessHet=3.0103;FS=17.296;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.38;ReadPosRankSum=2.793;SB=-6.389e-01;SOR=3.516;VQSLOD=1.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,15:50:99:247,0,806
1	884101	rs4970455	A	C	533.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.808;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=6.904;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.02;ReadPosRankSum=-2.726;SB=-2.191e+02;SOR=0.061;VQSLOD=5.20;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,25:41:99:562,0,274
1	886788	rs10465242	G	A	483.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.46;SB=-1.911e+02;SOR=1.739;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:36:512,36,0
1	886817	rs10465241	C	T	363.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-4.176e+01;SOR=3.442;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:392,30,0
1	887560	rs3748595	A	C	2319.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-1.436e+03;SOR=0.914;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2348,169,0
1	887801	rs3828047	A	G	2011.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.04;SB=-7.150e+02;SOR=1.567;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2040,154,0
1	888639	rs3748596	T	C	5304.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-3.318e+03;SOR=0.791;VQSLOD=4.29;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,170:170:99:5333,385,0
1	888659	rs3748597	T	C	4896.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-3.097e+03;SOR=0.719;VQSLOD=5.40;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,156:156:99:4925,358,0
1	889158	rs13303056	G	C	665.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-2.001e+02;SOR=2.093;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:694,51,0
1	889159	rs13302945	A	C	668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-2.061e+02;SOR=2.093;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:697,51,0
1	889638	rs13303206	G	C	382.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=0.00;SOR=4.804;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:411,30,0
1	894573	rs13303010	G	A	1694.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-5.830e+02;SOR=1.848;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1723,126,0
1	896986	.	C	T	1345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;DP=93;Dels=0.00;ExcessHet=3.0103;FS=10.049;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.47;ReadPosRankSum=0.050;SB=-5.890e+02;SOR=1.163;VQSLOD=4.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,50:93:99:1374,0,1169
1	897325	rs4970441	G	C	3513.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-1.773e+03;SOR=1.297;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3542,256,0
1	897564	rs13303229	T	C	2129.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-9.420e+02;SOR=1.341;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2158,157,0
1	898323	rs6605071	T	C	1156.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.76;SB=-5.940e+02;SOR=0.880;VQSLOD=4.73;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,33:33:87:1185,87,0
1	899928	rs6677386	G	C	405.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=-1.991e+02;SOR=1.329;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:434,33,0
1	899937	rs143296006	G	T	323.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.38;ReadPosRankSum=1.645;SB=-4.076e+01;SOR=1.802;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,9:10:27:352,27,0
1	899938	rs147467971	G	C	336.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-4.276e+01;SOR=3.258;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:365,27,0
1	899942	rs71509448	G	A	345.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-3.177e+01;SOR=3.258;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:374,27,0
1	900205	rs4970436	T	C	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.611;SB=0.00;SOR=0.551;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:173,0,198
1	900285	rs4970435	C	T	1086.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-3.200e+02;SOR=2.235;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1115,84,0
1	900286	rs4970434	A	G	1139.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-3.200e+02;SOR=2.235;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1168,84,0
1	900505	rs28705211	G	C	742.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.446;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=4.092;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.218;SB=-3.250e+02;SOR=0.319;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,29:58:99:771,0,892
1	907540	rs186774509	T	C	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.865;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.476;SB=-1.360e+02;SOR=1.022;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,16:44:99:457,0,723
1	908823	rs28687780	G	A	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.77;ReadPosRankSum=0.569;SB=-1.340e+02;SOR=0.287;VQSLOD=6.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,10:32:99:245,0,717
1	909073	rs3892467	C	T	606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.157;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=8.498;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=0.529;SB=-5.900e+01;SOR=3.164;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,21:31:99:635,0,254
1	909309	rs3829738	T	C	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=15.091;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.249;SB=-9.300e+01;SOR=0.820;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:213,0,211
1	909419	rs28548431	C	T	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=1.202;SB=-1.080e+02;SOR=0.569;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:279,0,115
1	909555	rs2340594	A	G	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.008;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=-0.226;SB=-1.790e+02;SOR=0.105;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:362,0,179
1	909768	rs2340593	A	G	2178.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-1.390e+03;SOR=0.774;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2207,160,0
1	911595	rs7417106	A	G	684.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.087;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.860;SB=-4.180e+02;SOR=0.306;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,25:37:99:713,0,374
1	911916	rs74045046	C	T	1073.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.805;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.021;SB=-6.990e+02;SOR=0.789;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,47:98:99:1102,0,1320
1	914876	rs13302983	T	C	959.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SB=-4.340e+02;SOR=1.179;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:29:78:988,78,0
1	915227	rs13303355	A	G	3567.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5483;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-1.582e+03;SOR=1.445;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,110:111:99:3596,259,0
1	916549	rs6660139	A	G	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.983;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.546;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-1.898;SB=-1.180e+02;SOR=0.364;VQSLOD=6.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,12:36:99:344,0,753
1	916662	rs56028034	A	C	97.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=-0.084;SB=0.00;SOR=0.330;VQSLOD=9.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:126,0,233
1	917492	rs28434575	C	T	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.312;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.956;SB=-2.260e+02;SOR=0.280;VQSLOD=7.38;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,16:30:99:436,0,417
1	917640	rs41285816	G	A	362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=1.059;SB=-1.290e+02;SOR=0.636;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:391,0,265
1	935046	rs113602214	G	A	496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.989;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=1.594;SB=-3.000e+02;SOR=0.648;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,23:49:99:525,0,649
1	948846	.	T	TA	454.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;RPA=1,2;RU=A;ReadPosRankSum=-1.958;SB=-1.200e+02;SOR=0.540;STR;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:492,0,541
1	948870	rs4615788	C	G	926.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-3.930e+02;SOR=1.681;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:955,72,0
1	948921	rs15842	T	C	1773.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-8.030e+02;SOR=1.118;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1802,135,0
1	949235	rs2465124	G	A	1233.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.64;SB=-4.580e+02;SOR=1.352;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1262,99,0
1	949608	rs1921	G	A	1194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.083;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=11.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-0.464;SB=-3.090e+02;SOR=1.811;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,41:87:99:1223,0,1293
1	949654	rs8997	A	G	794.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.933;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=6.452;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=0.914;SB=-2.490e+02;SOR=1.454;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,29:75:99:823,0,1266
1	949925	rs2799070	C	T	450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-8.297e+01;SOR=2.833;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:479,36,0
1	957898	rs2799064	G	T	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.290;SB=0.00;SOR=0.551;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:355,0,442
1	977330	rs2799066	T	C	1301.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-3.610e+02;SOR=2.362;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1330,96,0
1	977570	rs2710876	G	A	1494.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-1.603e+02;SOR=4.073;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1523,111,0
1	978603	rs35881187	CCT	C	745.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011;DB;DP=31;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.69;MQ0=0;MQRankSum=1.352;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=-0.854;SB=-2.580e+02;SOR=0.420;VQSLOD=0.145;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,17:31:99:783,0,674
1	981087	rs3128098	A	G	2023.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=-8.870e+02;SOR=1.160;VQSLOD=5.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2052,153,0
1	981931	rs2465128	A	G	1775.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.4498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-7.350e+02;SOR=1.609;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1804,141,0
1	982941	rs3128102	T	C	6100.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=192;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.77;SB=-3.415e+03;SOR=0.921;VQSLOD=1.76;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,192:192:99:6129,448,0
1	982994	rs10267	T	C	5946.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=194;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-3.364e+03;SOR=1.049;VQSLOD=3.95;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,194:194:99:5975,433,0
1	985266	rs2275813	C	T	546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.773;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=-2.510;SB=-3.430e+02;SOR=0.585;VQSLOD=7.15;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,21:36:99:575,0,316
1	985446	rs2275812	G	T	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=16.6719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=1.104;SB=-1.905e+01;SOR=0.016;VQSLOD=6.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:86:86,0,96
1	985449	rs2799067	G	A	59.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=12.3411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.47;ReadPosRankSum=1.699;SB=-1.611e+01;SOR=0.823;VQSLOD=6.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,3:11:49:88,0,49
1	985740	rs372388281	G	A	507.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.983;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.815;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.72;ReadPosRankSum=0.091;SB=-2.200e+02;SOR=1.034;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:536,0,471
1	986443	rs2710887	C	T	981.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-5.600e+02;SOR=0.957;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:1010,72,0
1	987200	rs9803031	C	T	1300.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-5.730e+02;SOR=1.292;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1329,99,0
1	988932	rs2710871	G	C	874.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-3.140e+02;SOR=1.781;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:903,66,0
1	1007203	rs4633229	A	G	795.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.28;SB=0.00;SOR=6.091;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:824,60,0
1	1007222	rs71628928	G	T	478.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.287;HaplotypeScore=3.3905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=-0.324;SB=-3.100e+01;SOR=1.609;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,17:26:99:507,0,223
1	1007432	rs4333796	G	A	485.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.612;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=1.468;SB=-2.830e+02;SOR=0.334;VQSLOD=7.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,22:49:99:514,0,739
1	1018144	rs9442395	T	C	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=1.233;SB=-1.980e+02;SOR=0.551;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:339,0,340
1	1018562	rs9442371	C	T	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=-1.434;SB=-1.765e+00;SOR=1.609;VQSLOD=8.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:99:121,0,190
1	1019175	rs2298215	C	G	703.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.027;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.235;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-1.240;SB=-2.360e+02;SOR=1.395;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:732,0,576
1	1019180	rs9442396	T	C	685.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.621;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-0.361;SB=-2.370e+02;SOR=1.314;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,24:49:99:714,0,570
1	1021415	rs3737728	A	G	751.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-1.851e+02;SOR=2.494;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:780,57,0
1	1026707	rs4074137	C	A	1274.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-4.960e+02;SOR=1.609;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1303,96,0
1	1026801	rs4562563	T	A	2074.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-1.237e+03;SOR=0.756;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2103,157,0
1	1115994	rs13376597	G	A	854.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.600;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.133;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=0.227;SB=-5.500e+02;SOR=0.487;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,33:51:99:883,0,414
1	1116231	rs13374146	T	C	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=4.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.55;ReadPosRankSum=2.346;SB=-1.766e+00;SOR=2.833;VQSLOD=5.84;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,9:14:99:316,0,116
1	1117398	rs12097586	A	G	484.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.667;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=1.611;SB=0.00;SOR=1.721;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,14:20:99:513,0,163
1	1118212	rs10907171	T	C	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.645;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=0.373;SB=-1.440e+02;SOR=0.756;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,21:53:99:565,0,879
1	1118275	rs61733845	C	T	729.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.164;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-0.821;SB=-4.050e+02;SOR=0.612;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,32:76:99:758,0,1135
1	1119657	rs4560982	G	C	283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=0.000;SB=0.00;SOR=1.329;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:312,0,164
1	1120431	rs1320571	G	A	1370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.585;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.765;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-0.846;SB=-9.150e+02;SOR=0.722;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,57:99:99:1399,0,1130
1	1147422	rs17568	C	T	486.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.129;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.290;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=0.468;SB=-2.640e+02;SOR=0.405;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:515,0,312
1	1154418	rs147936184	C	T	420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.859;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.157;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-0.396;SB=-2.170e+02;SOR=0.318;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,17:34:99:449,0,491
1	1156131	rs2887286	T	C	1651.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-8.130e+02;SOR=1.287;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1680,120,0
1	1158631	rs6603781	A	G	1499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-6.900e+02;SOR=1.426;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1528,117,0
1	1159517	rs6702268	T	C	368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SB=0.00;SOR=4.977;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:397,33,0
1	1163811	rs370690010	G	GGACA	1108.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;DB;DP=43;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.80;RPA=1,2;RU=GACA;ReadPosRankSum=-2.225;SB=-3.180e+02;SOR=1.140;STR;VQSLOD=5.41;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:24,18:43:99:1146,0,1538
1	1196863	rs6659787	T	C	1462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-1.981e+02;SOR=3.664;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1491,108,0
1	1198618	rs12563338	T	A	2342.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.00;SB=-6.050e+02;SOR=2.336;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2371,178,0
1	1216195	rs55834051	C	A	2030.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-1.026e+03;SOR=1.263;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2059,147,0
1	1220954	rs12751100	G	A	1293.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-4.530e+02;SOR=1.730;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1322,99,0
1	1221138	rs11260578	G	A	1173.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-2.311e+02;SOR=2.899;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1202,87,0
1	1221717	rs13306647	C	T	1313.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;SB=-3.210e+02;SOR=2.613;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1342,99,0
1	1222267	rs11260579	G	C	1639.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-6.740e+02;SOR=1.136;VQSLOD=3.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1668,126,0
1	1222739	rs2273273	C	G	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.791;SB=-1.460e+02;SOR=0.473;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:319,0,481
1	1223385	rs2228579	G	C	1012.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-3.710e+02;SOR=1.681;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1041,75,0
1	1225641	rs2748384	C	A	637.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.943;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-0.071;SB=-1.870e+02;SOR=1.445;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,22:39:99:666,0,397
1	1225959	rs1570867	C	G	1541.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-9.880e+02;SOR=0.732;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1570,114,0
1	1226102	rs2273274	G	A	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.284;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=0.528;SB=-1.650e+02;SOR=0.160;VQSLOD=6.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,12:31:99:266,0,583
1	1226221	rs2273275	A	G	557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-2.890e+02;SOR=0.914;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:586,45,0
1	1226292	rs2273276	G	A	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.091;SB=-1.600e+02;SOR=0.477;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:278,0,156
1	1226348	rs586965	C	G	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.889;SB=-1.950e+02;SOR=0.495;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:326,0,167
1	1227244	rs2239609	G	A	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.816;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.993;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.708;SB=-2.601e+01;SOR=2.336;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:345,0,330
1	1229114	rs2281459	C	A	56.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=0;MQRankSum=0.349;POSITIVE_TRAIN_SITE;QD=5.16;ReadPosRankSum=-0.381;SB=-1.765e+00;SOR=0.693;VQSLOD=3.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:85:85,0,290
1	1229680	rs2477781	G	T	3167.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-1.599e+03;SOR=0.999;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3196,238,0
1	1229878	.	A	C	1001.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.308;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-0.518;SB=-2.980e+02;SOR=0.764;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,36:81:99:1030,0,1425
1	1233580	rs2297234	G	T	469.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.838;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-0.046;SB=-1.970e+02;SOR=0.871;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,16:28:99:498,0,369
1	1233672	rs2297233	C	A	840.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.634;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.281;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.066;SB=-4.750e+02;SOR=0.394;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,35:61:99:869,0,770
1	1233941	rs1739855	T	C	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=-0.154;SB=-7.101e+01;SOR=0.458;VQSLOD=10.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:315,0,169
1	1235710	rs640712	T	A	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-1.025;SB=0.00;SOR=0.446;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:151,0,232
1	1237538	rs2296476	G	A	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.203;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.32;ReadPosRankSum=-0.392;SB=-9.732e-01;SOR=1.179;VQSLOD=8.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:99:123,0,360
1	1238492	rs12408158	G	A	573.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.442;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=-0.248;SB=-2.440e+02;SOR=0.507;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:602,0,430
1	1239339	rs11260584	T	G	754.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-8.097e+01;SOR=3.442;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:783,63,0
1	1242468	rs2274264	G	A	1204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.702;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=6.600;HaplotypeScore=5.6359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=-0.140;SB=-2.920e+02;SOR=1.331;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:75,43:118:99:1233,0,1987
1	1242656	rs2274263	G	A	869.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.320;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.413;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.315;SB=-2.350e+02;SOR=0.342;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,30:68:99:898,0,1137
1	1242707	rs2274262	A	G	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.385;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.026;SB=-1.230e+02;SOR=1.007;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,19:41:99:541,0,668
1	1246004	rs2296474	A	G	2595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6853;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.295e+03;SOR=1.058;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:83:99:2624,190,0
1	1254136	rs4970432	G	A	712.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-2.351e+02;SOR=2.030;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:741,54,0
1	1254436	rs1886773	A	G	1241.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-5.170e+02;SOR=1.387;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1270,93,0
1	1254443	rs1886772	G	A	1320.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SB=-5.430e+02;SOR=1.387;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1349,99,0
1	1254841	rs10907179	C	G	2075.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-9.950e+02;SOR=1.329;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2104,150,0
1	1259947	rs373639298	C	A	437.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-0.824;SB=-1.960e+02;SOR=0.871;VQSLOD=7.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,20:49:99:466,0,743
1	1262591	rs2296472	C	T	1417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-3.150e+02;SOR=2.780;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1446,111,0
1	1262966	rs307349	C	T	1630.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-1.003e+03;SOR=0.765;VQSLOD=4.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1659,123,0
1	1263144	rs307350	G	A	887.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-2.700e+02;SOR=2.066;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:916,66,0
1	1268847	rs307378	T	G	1738.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.885;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.20;ReadPosRankSum=-0.257;SB=-9.740e+02;SOR=0.525;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1767,129,0
1	1269554	rs307377	T	C	882.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-3.920e+02;SOR=1.255;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:69:911,69,0
1	1273116	rs307371	A	G	634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.60;SB=-4.010e+02;SOR=0.776;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:663,48,0
1	1275291	rs11582808	G	A	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.441;HaplotypeScore=9.4257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=1.271;SB=-1.766e+00;SOR=2.245;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:15:52:163,0,52
1	1275617	rs200061154	G	A	1803.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=3.187;HaplotypeScore=27.8052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-1.204;SB=-9.320e+02;SOR=0.422;VQSLOD=6.92;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,66:147:99:1832,0,1752
1	1276930	rs75244934	GCA	G	2081.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;RPA=4,3;RU=CA;SB=-3.340e+02;SOR=3.209;STR;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:2119,135,0
1	1276973	rs36106731	G	GACAC	4238.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.54;RPA=2,4;RU=AC;SB=-1.059e+03;SOR=2.265;STR;VQSLOD=4.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:64:99:4276,184,0
1	1277533	rs307362	T	C	1721.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-9.070e+02;SOR=1.278;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1750,132,0
1	1278237	rs307361	T	C	1371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-2.850e+02;SOR=3.056;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1400,111,0
1	1284490	rs150789461	G	A	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-3.577e+01;SOR=3.442;VQSLOD=7.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:30:402,30,0
1	1288583	rs3845295	C	G	1432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-4.000e+02;SOR=2.461;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1461,114,0
1	1288823	.	A	G	1382.77	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.57;SB=-5.430e+02;SOR=1.445;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1411,105,0
1	1289367	rs140777846	CTG	C	3317.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=25.40;SB=-1.243e+03;SOR=1.255;VQSLOD=3.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:63:99:3355,181,0
1	1289911	rs4970365	G	A	542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-7.997e+01;SOR=3.258;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:571,42,0
1	1296691	rs2765025	C	G	2336.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-1.294e+03;SOR=1.193;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2365,169,0
1	1296818	rs2765024	C	G	675.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=0.00;SOR=5.892;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:704,54,0
1	1309885	rs35745967	A	G	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.64;SB=-1.205e+02;SOR=1.609;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
1	1310074	rs2765035	C	G	649.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.07;SB=-4.360e+02;SOR=0.859;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:48:678,48,0
1	1325493	.	CA	C	99.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=1.420;QD=6.23;RPA=20,19;RU=A;ReadPosRankSum=1.142;SB=-1.204e+01;SOR=0.412;STR;VQSLOD=1.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,10:16:99:137,0,105
1	1330726	rs1240746	A	G	464.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-1.155e+02;SOR=2.448;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:493,39,0
1	1333598	rs35242196	C	A	3392.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-1.170e+03;SOR=1.902;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3421,256,0
1	1335790	rs1240708	A	G	1077.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-5.320e+02;SOR=0.836;VQSLOD=3.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1106,81,0
1	1336136	rs34091023	GGA	G	2893.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-6.310e+02;SOR=2.604;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:63:99:2931,172,0
1	1337334	rs1171	G	T	832.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=0.00;SOR=6.273;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:861,66,0
1	1341124	rs144889917	A	T	1443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.591;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=6.028;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.868;SB=-8.880e+02;SOR=0.319;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,59:115:99:1472,0,1583
1	1342612	rs2275915	G	C	1463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-4.400e+02;SOR=2.352;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1492,117,0
1	1374286	rs2242392	C	T	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=-0.269;SB=-9.732e-01;SOR=1.981;VQSLOD=6.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:127,0,184
1	1374834	rs1892289	A	G	470.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-1.055e+02;SOR=2.147;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:499,39,0
1	1387348	rs1781143	C	T	2765.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-1.104e+03;SOR=1.718;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2794,211,0
1	1387667	rs1781144	C	G	2337.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-1.304e+03;SOR=0.904;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2366,175,0
1	1387726	rs9793066	A	G	540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.07;ReadPosRankSum=-0.793;SB=-2.910e+02;SOR=0.776;VQSLOD=8.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,23:67:99:569,0,1215
1	1387764	rs9793256	G	A	566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4105;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=1.078;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=-0.831;SB=-3.230e+02;SOR=0.776;VQSLOD=2.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,23:65:99:595,0,1079
1	1387891	rs1624483	A	G	967.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-2.840e+02;SOR=2.303;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:996,72,0
1	1387920	rs1625156	G	A	705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-8.097e+01;SOR=3.816;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:734,57,0
1	1390717	rs1695866	A	G	693.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=-4.340e+02;SOR=0.776;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:722,54,0
1	1390875	rs1781147	C	T	932.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-5.370e+02;SOR=0.693;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:961,72,0
1	1390997	rs1781148	T	G	1011.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=-5.670e+02;SOR=0.760;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:75:1040,75,0
1	1391304	rs1695873	T	C	1064.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;SB=-4.080e+02;SOR=2.073;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:84:1093,84,0
1	1392413	.	A	C	171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.27;ReadPosRankSum=0.375;SB=0.00;SOR=0.473;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:200,0,260
1	1392451	rs1781149	C	T	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-1.691;SB=-5.800e+01;SOR=0.473;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:265,0,311
1	1394388	rs144528634	C	T	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=-0.524;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=0.816;SB=0.00;SOR=1.085;VQSLOD=3.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:213,0,125
1	1395402	rs372710996	C	T	232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=-2.262;QD=11.08;ReadPosRankSum=0.000;SB=-3.200e+01;SOR=0.693;VQSLOD=1.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,8:21:99:261,0,423
1	1395403	rs375327545	A	G	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=0;MQRankSum=-2.082;QD=12.99;ReadPosRankSum=-0.743;SB=-3.200e+01;SOR=0.892;VQSLOD=1.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:275,0,339
1	1395404	rs369885742	G	C	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.661;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=0;MQRankSum=-2.082;QD=11.09;ReadPosRankSum=-0.661;SB=-3.200e+01;SOR=0.892;VQSLOD=1.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:239,0,322
1	1395983	rs2801372	T	C	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=0.00;SOR=4.804;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
1	1403814	rs146537972	C	T	845.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.426;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.573;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.189;SB=-5.500e+02;SOR=0.315;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,35:77:99:874,0,1154
1	1407538	rs78689788	C	G	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=0.473;QD=7.80;ReadPosRankSum=-0.179;SB=-1.765e+00;SOR=1.112;VQSLOD=2.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:114,0,208
1	1417696	rs819970	C	G	676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-2.061e+02;SOR=2.030;VQSLOD=4.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:705,57,0
1	1418439	.	C	T	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.83;ReadPosRankSum=1.221;SB=-3.300e+01;SOR=1.270;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:247,0,123
1	1421531	rs819976	C	A	953.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.834;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=4.383;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.140;SB=-4.150e+02;SOR=1.008;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,39:78:99:982,0,1041
1	1421752	rs146336885	G	A	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.748;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=0.985;SB=-2.580e+02;SOR=0.387;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,17:24:99:564,0,215
1	1423267	rs819977	A	G	610.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.658;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-0.482;SB=-4.160e+02;SOR=0.801;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,27:44:99:639,0,584
1	1425296	rs41285828	C	T	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.049;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.21;ReadPosRankSum=0.638;SB=-2.203e+01;SOR=0.892;VQSLOD=8.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:18:86:86,0,387
1	1425700	rs819980	T	C	1749.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=1.381;HaplotypeScore=3.6781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-0.169;SB=-1.123e+03;SOR=0.701;VQSLOD=7.90;culprit=DP	GT:AD:DP:GQ:PL	0/1:63,69:133:99:1778,0,1691
1	1425816	rs149187984	G	A	1143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.019;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=4.383;HaplotypeScore=8.0275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.909;SB=-5.410e+02;SOR=0.351;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,43:87:99:1172,0,1381
1	1430985	rs139902189	C	T	797.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.67;ReadPosRankSum=-0.611;SB=-4.130e+02;SOR=0.772;VQSLOD=7.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:57,35:93:99:826,0,1474
1	1453373	rs7531221	A	G	476.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=0.00;SOR=5.283;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:505,39,0
1	1460825	.	C	T	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.08;ReadPosRankSum=0.700;SB=0.00;SOR=0.693;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:169,0,154
1	1462532	.	C	T	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-0.728;QD=15.58;ReadPosRankSum=0.755;SB=-7.997e+01;SOR=0.223;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:61:184,0,61
1	1469546	rs3128344	G	A	1088.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3665;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-2.141e+02;SOR=2.362;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1117,87,0
1	1477244	rs7290	T	C	767.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-1.383e+02;SOR=2.833;VQSLOD=6.33;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,23:23:60:796,60,0
1	1479333	rs7533	A	G	1973.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=-1.018e+03;SOR=1.098;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2002,147,0
1	1509825	rs6666293	A	G	1116.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-4.310e+02;SOR=1.739;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1145,90,0
1	1510035	rs150737039	GGC	G	558.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=0.00;SOR=4.977;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:15:33:596,33,0
1	1510801	rs7519837	C	T	814.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-1.553e+02;SOR=3.014;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:843,66,0
1	1551927	rs7418389	T	C	794.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.889;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=10.467;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=1.892;SB=-2.302e+01;SOR=2.833;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:823,0,610
1	1559971	rs12748433	C	T	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=0.00;SOR=4.804;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:410,30,0
1	1560100	rs28441650	G	A	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.855;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=-0.383;SB=-2.070e+02;SOR=1.264;VQSLOD=7.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,23:56:99:565,0,880
1	1560103	rs28635343	C	T	831.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.927;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.855;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=0.441;SB=-4.810e+02;SOR=0.332;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,33:56:99:860,0,595
1	1562437	rs28510084	C	G	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.934;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.190;SB=-2.600e+02;SOR=0.478;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:465,0,575
1	1562895	rs12735861	C	T	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-1.542;SB=-3.200e+01;SOR=1.508;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:11:99:154,0,152
1	1563789	rs74892851	C	A	558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.381;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=0.161;SB=-3.490e+02;SOR=0.693;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,25:59:99:587,0,983
1	1564952	rs112177324	TG	T	352.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DB;DP=19;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.56;RPA=6,5;RU=G;ReadPosRankSum=0.634;SB=-1.930e+02;SOR=0.223;STR;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:390,0,210
1	1574019	rs9442412	A	G	460.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.505;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=46.03;MQ0=1;MQRankSum=-0.534;POSITIVE_TRAIN_SITE;QD=5.01;ReadPosRankSum=-0.923;SB=-1.070e+02;SOR=0.631;VQSLOD=1.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:69,23:92:99:489,0,1876
1	1574076	rs9442413	G	A	193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.511;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.12;MQ0=0;MQRankSum=0.115;POSITIVE_TRAIN_SITE;QD=3.95;ReadPosRankSum=1.124;SB=-9.732e-01;SOR=0.465;VQSLOD=2.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,9:49:99:222,0,1358
1	1575616	rs80012316	T	C	1137.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-3.377e+01;SOR=4.743;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1166,93,0
1	1581926	rs61774917	G	T	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.744;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=52.63;MQ0=1;MQRankSum=-3.041;QD=3.64;ReadPosRankSum=0.549;SB=-9.400e+01;SOR=0.661;VQSLOD=0.542;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,15:62:99:254,0,1385
1	1582106	rs79942991	T	C	3042.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=3;QD=28.71;SB=-7.510e+02;SOR=1.981;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3071,229,0
1	1583669	rs142625832	C	CT	653.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=28.82;SB=0.00;SOR=5.421;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:691,42,0
1	1585597	rs7531938	A	G	580.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.40;SB=-3.250e+02;SOR=1.230;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:45:609,45,0
1	1585642	rs3936009	G	T	625.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.21;SB=-4.120e+02;SOR=0.776;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:654,48,0
1	1586752	rs11486023	T	C	2920.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-5.400e+02;SOR=2.975;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2949,214,0
1	1595867	rs4443835	C	A	1411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-7.290e+02;SOR=1.022;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1440,108,0
1	1602787	rs4639697	G	T	1550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-3.880e+02;SOR=2.400;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1579,117,0
1	1635004	rs874516	T	C	3204.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=8;POSITIVE_TRAIN_SITE;QD=26.93;SB=-2.025e+03;SOR=0.711;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3235,238,0
1	1635565	rs11488591	C	T	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.441;HaplotypeScore=5.6518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=0.835;SB=-2.540e+02;SOR=0.368;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:457,0,296
1	1635619	rs2076329	T	C	587.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.72;SB=-3.140e+02;SOR=1.230;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:616,48,0
1	1636044	rs1059822	G	A	4432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=5;POSITIVE_TRAIN_SITE;QD=27.19;SB=-2.491e+03;SOR=0.884;VQSLOD=3.41;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,163:164:99:4461,331,0
1	1636274	rs2179381	C	T	1093.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=6.167;HaplotypeScore=3.4217;MLEAC=1;MLEAF=0.500;MQ=53.50;MQ0=6;MQRankSum=3.333;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=0.537;SB=-3.480e+02;SOR=1.696;VQSLOD=0.211;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,33:48:99:1122,0,199
1	1638780	rs374384253	C	T	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.228;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.99;MQ0=1;MQRankSum=-1.120;QD=10.79;ReadPosRankSum=-0.910;SB=-1.766e+00;SOR=1.302;VQSLOD=2.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,8:20:99:244,0,362
1	1638925	rs200982240	C	T	496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.13;MQ0=3;MQRankSum=-1.850;QD=6.81;ReadPosRankSum=0.739;SB=-2.400e+02;SOR=0.711;VQSLOD=0.428;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,30:73:99:525,0,924
1	1644908	rs2179383	C	T	366.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.624;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.22;MQ0=0;MQRankSum=-4.210;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.312;SB=-1.160e+02;SOR=1.152;VQSLOD=0.201;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,16:25:99:395,0,249
1	1646371	rs115815404	G	T	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.920;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=54.65;MQ0=0;MQRankSum=-0.483;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=-0.593;SB=-9.800e+01;SOR=1.492;VQSLOD=0.202;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,10:13:88:271,0,88
1	1647722	rs114460890	G	T	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.266;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.361;SB=-1.765e+00;SOR=1.148;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:326,0,499
1	1647725	rs368680882	G	A	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.389;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.39;ReadPosRankSum=0.445;SB=-1.765e+00;SOR=1.148;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:313,0,505
1	1647726	rs80025558	T	G	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.549;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.12;ReadPosRankSum=0.235;SB=-1.765e+00;SOR=1.244;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:25:99:343,0,438
1	1647729	.	C	T	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.75;ReadPosRankSum=0.527;SB=-1.765e+00;SOR=1.148;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:322,0,481
1	1647730	.	A	G	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.354;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.264;SB=-1.765e+00;SOR=1.244;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:338,0,449
1	1647745	rs72634830	G	A	538.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.607;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=6.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.39;ReadPosRankSum=-0.050;SB=-5.150e-01;SOR=3.056;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:567,0,501
1	1647753	rs74045984	C	T	617.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.639;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=6.388;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.26;ReadPosRankSum=0.234;SB=-5.150e-01;SOR=3.142;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:646,0,590
1	1647778	rs72901773	C	G	798.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.948;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.657;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.467;SB=-2.010e+02;SOR=1.317;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,32:60:99:827,0,768
1	1647814	rs72901775	T	C	1465.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.558;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=4.510;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.401;SB=-4.500e+02;SOR=1.313;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,52:91:99:1494,0,1010
1	1647871	rs72909014	T	C	1809.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.559;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=3.393;HaplotypeScore=2.7478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-0.153;SB=-1.056e+03;SOR=0.822;VQSLOD=7.75;culprit=DP	GT:AD:DP:GQ:PL	0/1:49,69:118:99:1838,0,1212
1	1647893	.	C	CTTTCTT	4610.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;DP=113;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.60;RPA=1,2;RU=TTTCTT;ReadPosRankSum=-1.568;SB=-2.227e+03;SOR=0.558;STR;VQSLOD=4.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,60:113:99:4648,0,3113
1	1647968	rs34259364	C	CAT	1888.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.162;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=0;MQRankSum=-1.873;QD=31.48;ReadPosRankSum=0.574;SB=-2.100e+02;SOR=0.892;VQSLOD=2.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,36:62:99:1926,0,1150
1	1647971	rs77394327	G	A	1029.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.959;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=0;MQRankSum=-1.908;QD=19.07;ReadPosRankSum=1.479;SB=-1.050e+02;SOR=0.765;VQSLOD=1.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,32:54:99:1058,0,644
1	1647983	rs74429813	T	A	941.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.624;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=-2.036;QD=19.22;ReadPosRankSum=0.421;SB=-1.000e+02;SOR=0.434;VQSLOD=2.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,30:49:99:970,0,581
1	1648002	rs77107184	C	T	732.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.414;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=-2.096;QD=19.80;ReadPosRankSum=-1.035;SB=-4.276e+01;SOR=0.551;VQSLOD=2.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,24:37:99:761,0,422
1	1648018	rs79409185	C	T	596.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.373;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=56.89;MQ0=0;MQRankSum=-2.277;POSITIVE_TRAIN_SITE;QD=20.58;ReadPosRankSum=-0.607;SB=0.00;SOR=1.255;VQSLOD=3.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,18:29:99:625,0,313
1	1648053	.	A	G	274.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.58;MQ0=0;MQRankSum=-3.113;QD=16.16;ReadPosRankSum=1.481;SB=0.00;SOR=0.804;VQSLOD=1.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:303,0,245
1	1648054	.	A	G	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.22;MQ0=0;MQRankSum=-3.390;QD=15.86;ReadPosRankSum=2.076;SB=0.00;SOR=0.693;VQSLOD=1.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:282,0,254
1	1648058	rs77653063	G	T	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.82;MQ0=0;MQRankSum=-3.229;QD=16.05;ReadPosRankSum=1.798;SB=0.00;SOR=0.818;VQSLOD=1.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:269,0,235
1	1650787	.	T	C	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.14;ReadPosRankSum=0.366;SB=-1.610e+02;SOR=0.765;VQSLOD=7.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,15:41:99:362,0,730
1	1650797	.	A	G	381.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.9962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.867;SB=-1.930e+02;SOR=0.802;VQSLOD=7.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,16:43:99:410,0,761
1	1650801	.	T	C	411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.165;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.9949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.80;ReadPosRankSum=0.855;SB=-1.960e+02;SOR=0.871;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,16:42:99:440,0,756
1	1650807	rs1137005	T	C	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.264;HaplotypeScore=12.9962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=-1.182;SB=-1.970e+02;SOR=0.399;VQSLOD=6.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,14:46:99:354,0,879
1	1650832	rs72909030	A	G	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.804;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.555;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=1.044;SB=-1.870e+02;SOR=1.200;VQSLOD=7.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,19:48:99:480,0,790
1	1650845	rs1059831	G	A	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.75;ReadPosRankSum=0.408;SB=-1.740e+02;SOR=0.618;VQSLOD=8.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,13:49:99:359,0,999
1	1650920	rs36191908	G	A	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.184;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=0.000;SB=-1.750e+02;SOR=0.929;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,17:46:99:472,0,677
1	1650939	rs201741924	G	A	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-0.084;SB=-1.240e+02;SOR=0.892;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,15:40:99:375,0,625
1	1650940	rs74345479	G	A	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.181;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.274;SB=-1.270e+02;SOR=0.760;VQSLOD=7.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,15:39:99:375,0,637
1	1650942	rs75972011	A	G	354.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.920;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.217;SB=-1.320e+02;SOR=0.760;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,15:39:99:383,0,624
1	1650960	.	G	A	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.305;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-0.546;SB=-8.700e+01;SOR=0.631;VQSLOD=7.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,12:33:99:302,0,564
1	1650967	.	T	C	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.490;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.654;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-0.097;SB=-6.100e+01;SOR=1.061;VQSLOD=6.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,12:32:99:338,0,543
1	1650996	rs74223875	T	C	277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.585;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.57;ReadPosRankSum=0.205;SB=-3.200e+01;SOR=0.846;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:306,0,410
1	1651003	rs76941027	G	A	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.305;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.368;SB=-2.701e+01;SOR=0.818;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:268,0,403
1	1661704	rs710322	A	G	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.321;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.26;MQ0=2;MQRankSum=-5.901;POSITIVE_TRAIN_SITE;QD=8.53;ReadPosRankSum=-0.012;SB=-1.490e+02;SOR=0.671;VQSLOD=0.563;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,20:47:99:429,0,738
1	1663831	rs3817856	C	T	699.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.051;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-1.040;SB=-4.280e+02;SOR=0.583;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,30:50:99:728,0,638
1	1663851	rs2294486	G	C	713.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.798;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.324;SB=-2.900e+02;SOR=1.143;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,23:54:99:742,0,771
1	1663861	rs2294487	G	A	730.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.449;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-0.008;SB=-3.640e+02;SOR=0.946;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,26:57:99:759,0,782
1	1664019	rs2294488	T	C	1739.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-1.014e+03;SOR=1.034;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1768,132,0
1	1664124	rs2294489	T	C	1153.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.93;SB=-5.770e+02;SOR=1.085;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1182,87,0
1	1666447	rs35516110	G	GGTTT	465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=32.16;SB=-8.076e+01;SOR=2.584;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:503,21,0
1	1669734	rs80140081	G	T	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.903;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=56.00;MQ0=0;MQRankSum=4.215;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=1.066;SB=-1.240e+02;SOR=0.608;VQSLOD=2.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:272,0,277
1	1669748	rs115554296	A	G	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.551;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.79;MQ0=0;MQRankSum=-4.388;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=-0.709;SB=-9.000e+01;SOR=0.941;VQSLOD=1.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,11:23:99:246,0,356
1	1684347	rs139135464	C	CCCT	651.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;DB;DP=24;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.03;RPA=9,10;RU=CCT;ReadPosRankSum=-0.598;SB=-3.360e+02;SOR=0.223;STR;VQSLOD=3.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:24:99:689,0,300
1	1684472	rs7407	C	T	256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.94;ReadPosRankSum=-0.383;SB=-1.050e+02;SOR=0.892;VQSLOD=7.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,11:37:99:285,0,659
1	1685213	rs2072928	C	G	1415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.67;SB=-8.097e+01;SOR=4.921;VQSLOD=4.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1444,105,0
1	1686040	rs4751	G	T	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-0.488;SB=-2.330e+02;SOR=0.536;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,20:37:99:559,0,462
1	1686943	rs2072929	T	C	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.989;SB=-9.800e+01;SOR=1.420;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:534,0,359
1	1686962	rs2076327	C	T	394.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.874;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-1.930;SB=-6.700e+01;SOR=1.387;VQSLOD=7.21;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,14:26:99:423,0,320
1	1687625	rs34306661	T	C	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-0.286;SB=-5.100e+01;SOR=0.582;VQSLOD=10.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:274,0,197
1	1688192	rs2281173	A	G	1785.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-6.140e+02;SOR=2.024;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1814,141,0
1	1688469	rs4648623	C	G	1332.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-1.095e+02;SOR=4.235;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1361,105,0
1	1688513	rs4648624	G	T	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.452;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=-0.338;SB=-6.800e+01;SOR=0.110;VQSLOD=7.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:178,0,435
1	1689762	rs2235537	T	C	213.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=-1.521;SB=-4.276e+01;SOR=0.175;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:242,0,233
1	1690126	rs35357728	A	AAC	477.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.65;RPA=1,2;RU=AC;SB=0.00;SOR=4.804;STR;VQSLOD=6.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:12:30:515,30,0
1	1696659	rs5021859	A	G	410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.23;SB=-4.176e+01;SOR=3.611;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:439,36,0
1	1823524	rs3806168	G	C	432.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=-1.493;SB=-1.760e+02;SOR=1.179;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,13:19:99:461,0,177
1	1823922	rs6688000	A	G	2614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-1.499e+03;SOR=0.902;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2643,202,0
1	1846582	rs2748987	A	G	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.036;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=-1.333;SB=-4.276e+01;SOR=0.069;VQSLOD=7.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,8:22:99:211,0,474
1	1846765	rs2247560	G	A	983.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.955;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.121;SB=-6.470e+02;SOR=0.493;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,39:82:99:1012,0,1237
1	1847856	rs2748986	G	T	1126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.104;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=-0.207;SB=-4.760e+02;SOR=0.690;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,43:72:99:1155,0,732
1	1848109	rs2803296	G	C	1739.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.592;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=9.166;HaplotypeScore=5.5564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=1.038;SB=-9.050e+02;SOR=0.311;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,57:109:99:1768,0,1563
1	1849529	rs28640257	A	G	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=-1.004;SB=-2.420e+02;SOR=0.569;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,20:36:99:589,0,533
1	1850428	rs2295363	A	G	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-1.864;SB=-6.600e+01;SOR=0.527;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:167,0,179
1	1853615	rs148711182	T	TCTGA	769.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.33;SB=-7.576e+01;SOR=3.442;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:807,33,0
1	1854109	rs2803348	A	G	806.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.936;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=1.620;SB=-3.830e+02;SOR=0.939;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,28:69:99:835,0,1012
1	1854321	rs2250833	A	G	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=1.870;SB=-3.876e+01;SOR=0.593;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:309,0,121
1	1855450	rs28423370	A	G	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=2.920;SB=-4.276e+01;SOR=0.223;VQSLOD=8.45;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:177,0,186
1	1857131	.	C	T	347.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.966;DP=53;Dels=0.00;ExcessHet=3.0103;FS=4.096;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.56;ReadPosRankSum=-0.514;SB=-9.900e+01;SOR=0.195;VQSLOD=5.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,15:53:99:376,0,1243
1	1858309	rs941530	T	C	1601.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.049;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=4.196;HaplotypeScore=6.0092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-0.110;SB=-7.050e+02;SOR=1.087;VQSLOD=7.42;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,60:132:99:1630,0,1948
1	1859296	rs2748984	T	C	1008.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.311;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=-1.309;SB=0.00;SOR=0.693;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,30:60:99:1037,0,1005
1	1860087	rs2748983	C	T	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.770;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-0.176;SB=-1.020e+02;SOR=1.179;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:417,0,267
1	1861582	rs2803295	C	T	831.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.914;HaplotypeScore=2.9459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=2.307;SB=-4.300e+02;SOR=0.559;VQSLOD=7.00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:39,33:72:99:860,0,982
1	1870210	rs2803323	G	A	356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.744;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.590;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=0.741;SB=-7.300e+01;SOR=0.157;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,14:35:99:385,0,674
1	1871979	rs2748982	G	A	924.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.255;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=0.516;SB=-2.980e+02;SOR=1.058;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,32:63:99:953,0,791
1	1873453	rs2748981	G	A	765.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=5.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=0.070;SB=-1.270e+02;SOR=1.738;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,26:49:99:794,0,648
1	1873514	rs2803326	A	G	1046.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.070;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-1.053;SB=-5.640e+02;SOR=0.733;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,42:83:99:1075,0,1077
1	1873525	rs2803327	T	C	1149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-0.255;SB=-6.250e+02;SOR=0.725;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,45:88:99:1178,0,1030
1	1873697	rs2748980	G	A	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.014;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=1.126;SB=-1.090e+02;SOR=1.353;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,19:44:99:545,0,635
1	1873699	rs2748979	G	C	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.432;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.626;SB=-8.900e+01;SOR=1.911;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:565,0,599
1	1875655	rs2803335	C	T	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-1.098;SB=0.00;SOR=0.399;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:186,0,323
1	1875858	rs2803336	C	G	1630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=2.181;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.146;SB=-7.150e+02;SOR=0.899;VQSLOD=7.12;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,61:142:99:1659,0,2169
1	1875859	rs2803337	A	G	1597.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.156;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=1.375;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.459;SB=-7.290e+02;SOR=0.846;VQSLOD=7.51;culprit=DP	GT:AD:DP:GQ:PL	0/1:82,60:142:99:1626,0,2175
1	1876114	rs2803338	C	T	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.543;SB=-1.766e+00;SOR=1.085;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:192,0,259
1	1878071	rs2803340	C	T	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=-1.056;SB=0.00;SOR=1.371;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:375,0,170
1	1878628	rs2803341	C	T	542.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.859;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=9.739;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-0.808;SB=-2.657e-01;SOR=3.486;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:571,0,544
1	1887019	rs28548017	A	G	541.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.931;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.027;SB=-2.490e+02;SOR=0.323;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:570,0,722
1	1888369	rs2803285	A	G	567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.298;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=-0.466;SB=0.00;SOR=0.811;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:596,0,551
1	1891263	rs2474454	A	T	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=-0.148;SB=-4.176e+01;SOR=0.368;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:251,0,120
1	1896333	rs61734005	G	A	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.527;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.491;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=0.256;SB=-2.060e+02;SOR=1.287;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,22:35:99:610,0,336
1	1900350	rs78208385	G	T	322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.297;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=-0.754;SB=-1.490e+02;SOR=0.593;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:351,0,330
1	1916782	rs3795282	C	A	552.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.992;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.267;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-0.972;SB=-2.720e+02;SOR=0.426;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,22:43:99:581,0,577
1	1916806	rs3795281	C	T	662.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.265;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-1.364;SB=-3.370e+02;SOR=0.577;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:691,0,574
1	1916890	rs3795280	C	T	584.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.850;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.594;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.183;SB=-3.710e+02;SOR=0.494;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,25:45:99:613,0,504
1	1918191	rs4233028	A	G	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.52;ReadPosRankSum=-2.128;SB=-2.701e+01;SOR=0.693;VQSLOD=8.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:89:89,0,185
1	1918296	rs74887383	C	T	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.971;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.141;SB=-6.200e+01;SOR=1.508;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:331,0,363
1	1918488	rs4350140	A	G	783.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.905;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=0.840;SB=-4.780e+02;SOR=0.688;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,32:80:99:812,0,1191
1	1922303	rs13303195	C	T	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.783;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=-0.338;SB=-1.720e+02;SOR=0.212;VQSLOD=7.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,11:26:99:241,0,455
1	1956362	rs2376805	G	A	2005.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-7.810e+02;SOR=1.765;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2034,150,0
1	1957037	rs2229110	T	C	3001.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=11.411;DB;DP=233;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-1.435;SB=-1.515e+03;SOR=0.714;VQSLOD=4.40;culprit=DP	GT:AD:DP:GQ:PL	0/1:124,109:233:99:3030,0,3333
1	1957299	rs3820007	C	T	600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.264;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.0855;MLEAC=1;MLEAF=0.500;MQ=60.31;MQ0=0;MQRankSum=-1.210;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=-0.390;SB=0.00;SOR=1.244;VQSLOD=3.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,21:35:99:629,0,372
1	1959121	rs3795279	T	C	465.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.523;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.080;SB=-2.420e+02;SOR=0.735;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:494,0,541
1	1959186	rs6688232	C	T	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.328;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.800;SB=-2.601e+01;SOR=1.609;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:304,0,296
1	1959261	rs28574670	A	G	441.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=0.00;SOR=5.136;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:470,36,0
1	1960926	rs28581504	T	C	1037.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.59;SB=-2.710e+02;SOR=2.303;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1066,78,0
1	1960964	rs116197762	A	G	496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.393;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.410;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-0.068;SB=-1.790e+02;SOR=0.257;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,17:40:99:525,0,736
1	1987803	rs2803309	G	A	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-0.352;SB=0.00;SOR=0.859;VQSLOD=10.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:207,0,173
1	1987993	rs12184	T	C	1275.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-7.330e+02;SOR=0.836;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:96:1304,96,0
1	1988044	rs3820005	G	C	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.159;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.004;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=1.210;SB=-1.580e+02;SOR=1.329;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:407,0,446
1	1991014	rs1878745	A	G	1245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=1.749;SB=-7.470e+02;SOR=0.763;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,50:109:99:1274,0,1533
1	1991123	rs1878746	G	A	1087.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.411;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.964;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=0.447;SB=-4.820e+02;SOR=0.428;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,40:83:99:1116,0,1181
1	1991162	rs1878747	G	A	851.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.258;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=1.050;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.006;SB=-1.560e+02;SOR=0.914;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,32:66:99:880,0,923
1	1991173	rs2247923	A	G	1893.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-5.120e+02;SOR=2.342;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1922,141,0
1	1991241	rs1105100	C	G	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.493;SB=-1.765e+00;SOR=1.609;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:363,0,344
1	2005740	rs2459986	T	C	551.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3004;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.08;SB=-2.431e+02;SOR=1.721;VQSLOD=3.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:23:45:580,45,0
1	2005805	rs28694018	C	G	108.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=0.349;SB=-3.277e+01;SOR=0.120;VQSLOD=7.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:99:137,0,212
1	2075525	.	C	T	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.918;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.45;ReadPosRankSum=1.347;SB=0.00;SOR=1.473;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:365,0,153
1	2075560	rs427811	T	G	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.600;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.11;ReadPosRankSum=1.938;SB=-9.732e-01;SOR=1.022;VQSLOD=8.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,7:26:99:213,0,643
1	2075570	rs377283	T	C	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.566;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.47;ReadPosRankSum=1.929;SB=-2.302e+01;SOR=0.804;VQSLOD=8.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,8:29:99:216,0,595
1	2077409	rs385039	A	G	877.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=6.421;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.230;SB=-2.510e+02;SOR=1.503;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,36:78:99:906,0,1124
1	2082458	rs262670	C	T	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.716;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=-1.065;SB=-1.170e+02;SOR=0.239;VQSLOD=7.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,16:38:99:402,0,645
1	2082489	rs262669	G	A	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.926;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=-0.224;SB=-2.601e+01;SOR=0.502;VQSLOD=9.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:193,0,456
1	2113565	rs262688	T	G	1132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.790;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.741;SB=-6.450e+02;SOR=0.556;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,40:92:99:1161,0,1494
1	2118539	rs2503699	T	C	1573.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-4.540e+02;SOR=2.124;VQSLOD=6.66;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1602,114,0
1	2121118	rs2503701	C	T	1721.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-5.950e+02;SOR=1.791;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1750,126,0
1	2144982	rs2480714	G	T	697.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-2.401e+02;SOR=1.931;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:726,54,0
1	2234251	rs1496555	A	G	332.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-4.276e+01;SOR=3.258;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:361,27,0
1	2234903	rs2256178	C	T	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=4.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.65;ReadPosRankSum=-0.346;SB=-1.807e+01;SOR=1.656;VQSLOD=6.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,10:32:99:273,0,647
1	2235662	rs2645073	G	A	74.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=1.834;SB=-2.801e+01;SOR=1.609;VQSLOD=6.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:99:103,0,168
1	2235672	rs2843159	C	T	70.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=1.368;SB=-2.901e+01;SOR=1.609;VQSLOD=6.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:99:99,0,181
1	2268040	rs78290236	T	A	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-0.836;SB=-2.800e+02;SOR=0.619;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,17:26:99:411,0,268
1	2286947	rs1039100	A	G	1438.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.21;SB=-9.810e+02;SOR=0.813;VQSLOD=6.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1467,105,0
1	2304198	rs199779538	GA	G	144.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-0.691;SB=0.00;SOR=0.836;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:15:99:182,0,261
1	2304200	rs77654900	C	T	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.37;ReadPosRankSum=-0.622;SB=0.00;SOR=0.836;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:241,0,199
1	2304201	rs186678329	C	G	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=-0.484;SB=0.00;SOR=0.836;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:245,0,207
1	2310470	rs903902	A	T	495.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=6.139;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-0.451;SB=-8.600e+01;SOR=2.288;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:524,0,435
1	2317069	rs16825089	A	C	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=1.124;SB=0.00;SOR=0.569;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:199,0,230
1	2327075	rs3736330	C	T	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-0.449;SB=-1.765e+00;SOR=1.609;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:240,0,237
1	2328714	rs2645081	A	G	1143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.836;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=1.146;SB=-1.090e+02;SOR=0.468;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,36:58:99:1172,0,670
1	2333794	rs374919458	C	G	968.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=2.765;HaplotypeScore=4.3406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-0.670;SB=-5.030e+02;SOR=0.916;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,39:93:99:997,0,1345
1	2333944	.	T	TC	261.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.46;RPA=3,4;RU=C;ReadPosRankSum=-0.427;SB=0.00;SOR=0.465;STR;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:22:99:299,0,409
1	2337032	rs1129171	C	T	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=2.076;SB=-3.401e+01;SOR=0.412;VQSLOD=8.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:99:130,0,221
1	2340056	rs368273118	C	T	726.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.468;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.83;ReadPosRankSum=-1.488;SB=-4.010e+02;SOR=0.321;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,27:49:99:755,0,589
1	2340200	rs2494598	T	C	553.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.112;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.342;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=-0.598;SB=-2.200e+02;SOR=1.089;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,23:55:99:582,0,875
1	2399119	rs2494632	A	G	424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-2.401e+02;SOR=0.836;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:453,33,0
1	2399149	rs2494631	A	G	311.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.98;SB=-2.061e+02;SOR=1.022;VQSLOD=4.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:340,24,0
1	2409892	rs12727342	A	G	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.803;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-1.108;SB=-1.020e+02;SOR=0.874;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:418,0,398
1	2411451	rs10797428	A	G	1095.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.104;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=1.815;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=1.186;SB=-5.840e+02;SOR=0.452;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,42:84:99:1124,0,1096
1	2418625	rs7512269	C	T	517.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.129;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-0.085;SB=-1.970e+02;SOR=0.640;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,21:56:99:546,0,966
1	2420590	rs10752744	T	C	2672.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-3.670e+02;SOR=3.855;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2701,202,0
1	2420913	rs6668720	A	G	859.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.023;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=6.227;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=0.970;SB=-5.150e-01;SOR=2.833;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:888,0,945
1	2422614	rs2477699	G	A	1213.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-3.050e+02;SOR=2.670;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1242,93,0
1	2426149	rs2182177	C	A	448.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.6433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=0.894;SB=-1.165e+02;SOR=0.569;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,16:20:59:477,0,59
1	2428874	rs2477706	T	C	1982.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6823;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.33;SB=0.00;SOR=7.824;VQSLOD=3.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:52:99:2011,147,0
1	2430617	rs2296442	C	T	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.473;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=1.562;SB=-8.400e+01;SOR=1.460;VQSLOD=7.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,10:29:99:237,0,454
1	2431057	rs2477707	C	T	855.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.772;SB=-4.370e+02;SOR=0.989;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,33:74:99:884,0,1022
1	2433900	rs12736998	C	T	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.215;SB=-1.210e+02;SOR=0.758;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:247,0,264
1	2434460	.	G	T	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.292;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.56;ReadPosRankSum=0.800;SB=-1.990e+02;SOR=0.551;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:386,0,293
1	2441358	rs2494620	T	C	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.217;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.824;SB=-9.300e+01;SOR=0.829;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:340,0,429
1	2441392	rs2494619	T	C	362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.082;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.038;SB=-1.550e+02;SOR=0.540;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:391,0,451
1	2442374	rs7543665	G	A	154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.15;ReadPosRankSum=-0.296;SB=-1.765e+00;SOR=1.022;VQSLOD=9.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:183,0,405
1	2442953	rs2236397	C	A	1745.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.291;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.596;SB=-8.040e+02;SOR=0.710;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,61:119:99:1774,0,1627
1	2443212	rs2236396	G	A	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.357;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=-2.618;SB=-1.765e+00;SOR=0.892;VQSLOD=8.30;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,8:23:99:245,0,493
1	2445406	rs2247308	A	G	862.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=1.189;SB=-5.560e+02;SOR=0.731;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,34:59:99:891,0,630
1	2446880	rs2236395	A	G	968.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.965;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.784;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=1.247;SB=-1.660e+02;SOR=1.218;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,32:72:99:997,0,1189
1	2446960	rs2236394	T	C	348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=1.385;SB=-7.100e+01;SOR=0.430;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:377,0,332
1	2452357	rs2494636	G	A	656.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.744;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-0.261;SB=-2.040e+02;SOR=0.859;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,26:49:99:685,0,633
1	2452444	rs4648643	A	G	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=1.540;SB=-1.210e+02;SOR=1.218;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:409,0,365
1	2452569	rs2985862	T	C	1831.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-5.300e+02;SOR=2.387;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1860,138,0
1	2487663	rs2227312	C	A	2712.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.563e+03;SOR=0.761;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2741,202,0
1	2487766	.	T	C	2264.77	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7960;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.90;SB=-9.240e+02;SOR=1.643;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2293,178,0
1	2488066	.	C	T	479.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.362;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.114;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.801;SB=-2.840e+02;SOR=0.434;VQSLOD=6.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,20:51:99:508,0,715
1	2488153	rs4870	A	G	669.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-4.376e+01;SOR=4.407;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:698,51,0
1	2490898	rs2257763	C	A	1362.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.574;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.4093;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.07;ReadPosRankSum=-0.478;SB=-5.850e+02;SOR=0.580;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:3,37:45:99:1391,108,0
1	2490942	rs2281852	C	A	1349.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-8.900e+02;SOR=0.735;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1378,99,0
1	2491205	rs2234161	C	T	2431.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.30;SB=-8.770e+02;SOR=1.542;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2460,181,0
1	2494645	rs371087831	C	T	1543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.419;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.54;ReadPosRankSum=0.026;SB=-7.040e+02;SOR=0.747;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,58:114:99:1572,0,1414
1	2494785	.	G	A	730.77	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.48;SB=-4.076e+01;SOR=4.615;VQSLOD=4.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:759,57,0
1	2520302	rs6667564	T	C	507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-1.791e+02;SOR=1.739;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:536,39,0
1	2520500	rs6701238	G	A	616.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.82;SB=-3.200e+02;SOR=1.179;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:645,48,0
1	2520527	rs6670198	T	C	504.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-1.603e+02;SOR=2.049;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:533,39,0
1	2523212	rs876938	G	C	654.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.03;SB=-3.240e+02;SOR=0.914;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:683,51,0
1	2524205	rs745368	C	T	1395.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-7.280e+02;SOR=1.051;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1424,102,0
1	2525660	rs3748818	G	A	529.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-1.085e+02;SOR=2.448;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:558,42,0
1	2525665	rs3748817	T	C	501.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-1.105e+02;SOR=2.303;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:530,39,0
1	2526746	rs3748816	A	G	732.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-4.050e+02;SOR=0.776;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:761,57,0
1	2535612	.	G	A	384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.754;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.39;ReadPosRankSum=-1.124;SB=-1.760e+02;SOR=0.437;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:413,0,378
1	2535613	rs4648562	C	A	894.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7880;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.88;SB=-3.200e+02;SOR=1.609;VQSLOD=4.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:923,69,0
1	2535758	rs4648652	A	G	1456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-5.080e+02;SOR=1.863;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1485,108,0
1	2537095	rs78506337	G	A	957.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-3.790e+02;SOR=1.460;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:986,72,0
1	2537838	rs41300092	C	T	2224.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-9.640e+02;SOR=1.394;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2253,169,0
1	2538349	rs10797436	G	A	463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=0.00;SOR=5.283;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:492,39,0
1	2541269	rs10797440	A	G	3345.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-1.543e+03;SOR=1.232;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3374,250,0
1	2542653	rs10910111	A	G	386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.19;SB=-1.653e+02;SOR=1.270;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:415,30,0
1	2573199	rs4648662	A	G	1957.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-1.067e+03;SOR=1.057;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1986,141,0
1	2700372	rs4648390	C	T	1372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-4.420e+02;SOR=2.038;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1401,108,0
1	2938265	rs4576609	C	T	718.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-2.229;SB=-3.460e+02;SOR=0.730;VQSLOD=9.35;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,28:50:99:747,0,615
1	2938407	rs4013154	CAGA	C	1695.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DB;DP=74;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.55;RPA=2,1;RU=AGA;ReadPosRankSum=1.780;SB=-6.830e+02;SOR=0.559;STR;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,33:74:99:1733,0,2150
1	2938697	rs3795262	T	G	1358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.858;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-0.956;SB=-5.620e+02;SOR=0.631;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,48:98:99:1387,0,1566
1	2983963	rs2297828	G	A	2564.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-1.378e+03;SOR=1.116;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2593,190,0
1	3301721	rs2282198	C	T	1133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.326;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=7.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-1.073;SB=-4.090e+02;SOR=0.171;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1162,0,1033
1	3312664	rs56378103	C	T	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.223;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.138;SB=0.00;SOR=0.569;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:203,0,239
1	3312914	rs871822	T	G	1034.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.883;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.737;SB=-6.430e+02;SOR=0.765;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,41:81:99:1063,0,1042
1	3312963	rs12726710	C	T	975.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.009;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.577;SB=-6.280e+02;SOR=0.385;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,43:81:99:1004,0,984
1	3327621	rs3036506	CAT	C	219.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=0.605;QD=19.98;RPA=2,1;RU=AT;ReadPosRankSum=0.522;SB=0.00;SOR=0.859;STR;VQSLOD=2.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:257,0,198
1	3328358	rs870124	T	C	1515.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-5.160e+02;SOR=1.931;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1544,114,0
1	3328659	rs2493292	C	T	1611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.691;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-0.799;SB=-9.430e+02;SOR=0.596;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,63:118:99:1640,0,1744
1	3329384	rs2493291	C	T	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=1.833;SB=-1.205e+02;SOR=0.368;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,10:12:49:256,0,49
1	3342804	rs870171	G	T	871.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.440;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-0.260;SB=-5.450e+02;SOR=1.121;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,37:55:99:900,0,416
1	3350134	rs10752734	T	C	69.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=57.45;MQ0=1;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.81;ReadPosRankSum=-1.489;SB=-2.602e+01;SOR=0.283;VQSLOD=9.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:98:98,0,210
1	3350173	rs2493271	T	C	370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=4.6791;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=1;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-0.928;SB=-5.600e+01;SOR=1.204;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:399,0,381
1	3383593	rs3893316	G	T	547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.24;SB=-3.777e+01;SOR=4.174;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:576,45,0
1	3383665	rs7550948	G	A	1731.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-4.910e+02;SOR=2.480;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1760,129,0
1	3383898	rs6424078	A	G	2252.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-5.470e+02;SOR=2.584;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2281,169,0
1	3385250	rs1417897	C	A	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.163;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=0.368;SB=0.00;SOR=1.473;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:324,0,161
1	3385256	rs1891143	A	G	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.607;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-0.503;SB=0.00;SOR=0.293;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:196,0,369
1	3385330	rs2493249	T	C	941.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-3.570e+02;SOR=1.536;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:970,72,0
1	3389727	rs2185639	C	T	2479.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-1.386e+03;SOR=0.987;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2508,187,0
1	3390238	rs2493323	T	A	852.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.65;SB=-4.390e+02;SOR=1.473;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:63:881,63,0
1	3394456	rs4638054	T	C	2391.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-6.960e+02;SOR=2.147;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2420,181,0
1	3394640	rs4422946	A	G	3711.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;SB=-1.596e+03;SOR=1.329;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3740,271,0
1	3394674	rs4534324	T	C	2661.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-1.146e+03;SOR=1.637;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2690,205,0
1	3395039	rs10797395	G	A	3730.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-2.363e+03;SOR=0.795;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3759,277,0
1	3395229	rs4553117	T	C	1060.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-3.777e+01;SOR=5.421;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1089,90,0
1	3395973	rs70938094	ACC	A	1891.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;RPA=5,3;RU=C;SB=-7.050e+02;SOR=1.445;STR;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:41:99:1929,120,0
1	3396609	rs881978	C	T	1104.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=0.00;SOR=6.804;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1133,87,0
1	3397188	rs2487677	T	C	725.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.205e+02;SOR=3.258;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:754,57,0
1	3406840	rs370010954	G	A	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.08;ReadPosRankSum=0.984;SB=0.00;SOR=0.223;VQSLOD=7.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:89:89,0,228
1	3414105	rs10909951	C	T	1000.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=-4.350e+02;SOR=1.402;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1029,75,0
1	3416449	rs7553399	C	A	1705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-1.074e+03;SOR=0.693;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1734,126,0
1	3417131	rs2821031	A	G	1955.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-1.022e+03;SOR=1.214;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1984,150,0
1	3417960	rs4648507	G	A	967.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-4.710e+02;SOR=1.214;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:996,72,0
1	3418565	rs2821030	T	C	451.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-8.297e+01;SOR=3.126;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:480,39,0
1	3431168	rs199566066	G	A	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.650;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.738;HaplotypeScore=3.3599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.312;SB=-1.709e+01;SOR=2.093;VQSLOD=4.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,6:22:99:160,0,370
1	3440647	rs2794322	T	C	452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=-7.497e+01;SOR=2.833;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:481,36,0
1	3477393	.	G	A	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.20;ReadPosRankSum=0.029;SB=-2.701e+01;SOR=0.914;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:345,0,283
1	3496479	rs2794340	T	C	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-0.350;SB=-2.440e+02;SOR=0.818;VQSLOD=10.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,15:19:84:394,0,84
1	3511934	rs7513275	A	G	546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.257;HaplotypeScore=19.3322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.260;SB=-2.030e+02;SOR=0.425;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,22:50:99:575,0,740
1	3518944	rs7521546	T	C	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=0.873;SB=-3.876e+01;SOR=0.293;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:212,0,163
1	3519179	rs2794330	C	T	1270.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-4.800e+02;SOR=1.900;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:96:1299,96,0
1	3527944	rs10797402	C	G	1098.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-6.740e+02;SOR=0.859;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:81:1127,81,0
1	3528082	rs10797403	T	C	340.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-8.097e+01;SOR=2.670;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:369,27,0
1	3543951	rs16823922	G	A	927.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.050;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.296;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.817;SB=-2.690e+02;SOR=1.031;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,36:68:99:956,0,908
1	3544235	rs5772111	TA	T	1735.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;DB;DP=100;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=1.321;POSITIVE_TRAIN_SITE;QD=18.47;RPA=3,2;RU=A;ReadPosRankSum=-0.520;SB=-5.710e+02;SOR=0.976;STR;VQSLOD=0.371;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,51:100:99:1773,0,1369
1	3544346	rs4276857	T	C	459.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.913;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-0.391;SB=0.00;SOR=0.922;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:488,0,377
1	3544868	rs16823926	C	T	270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.780;SB=-9.200e+01;SOR=0.693;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:299,0,366
1	3545175	rs147637374	GTTCTGGGAGCTCCTCCCCC	G	4245.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;RPA=2,1;RU=TTCTGGGAGCTCCTCCCCC;SB=-2.148e+02;SOR=4.712;STR;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:39:63:4283,63,0
1	3548136	rs2760321	T	C	3297.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-1.666e+03;SOR=1.222;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:106:99:3326,253,0
1	3548342	rs2181485	G	A	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.487;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.022;SB=-1.240e+02;SOR=0.990;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:438,0,339
1	3549852	rs2273954	G	A	335.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=-1.613e+02;SOR=1.445;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:364,27,0
1	3551792	rs2296034	G	A	1028.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.814;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.800;SB=-5.650e+02;SOR=0.469;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,38:85:99:1057,0,1507
1	3555428	rs3818330	G	T	768.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.008;SB=-3.270e+02;SOR=0.680;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,28:59:99:797,0,797
1	3564231	rs12086552	C	G	658.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.783;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=-0.227;SB=-7.497e+01;SOR=0.246;VQSLOD=6.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,20:31:99:687,0,362
1	3566433	rs1004649	T	G	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.103;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=-1.159;SB=-5.900e+01;SOR=1.402;VQSLOD=7.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,8:20:99:214,0,331
1	3607520	rs3765730	G	A	1216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-0.466;SB=-7.550e+02;SOR=0.631;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,49:91:99:1245,0,1098
1	3638674	rs1801174	C	T	2677.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-1.547e+03;SOR=0.911;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2706,196,0
1	3638834	rs12737840	C	T	723.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-8.097e+01;SOR=3.716;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:752,57,0
1	3640085	rs6424091	C	G	213.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.732;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=5.478;HaplotypeScore=9.3354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.22;ReadPosRankSum=-1.752;SB=-1.050e+02;SOR=0.068;VQSLOD=6.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,8:26:99:242,0,515
1	3644349	rs2181486	A	G	572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.228;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=6.914;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=0.249;SB=-3.034e+02;SOR=0.080;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,21:30:99:601,0,259
1	3644374	rs2146657	A	G	501.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.555;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.050;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=0.000;SB=-1.770e+02;SOR=0.257;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,17:25:99:530,0,224
1	3644594	.	G	A	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.85;ReadPosRankSum=0.527;SB=-4.176e+01;SOR=0.191;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:333,0,337
1	3645835	rs2254530	C	A	96.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=2.8912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.44;ReadPosRankSum=-0.518;SB=-9.732e-01;SOR=2.215;VQSLOD=6.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:125,0,212
1	3645844	rs2096224	G	A	67.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=3.7233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.65;ReadPosRankSum=-0.163;SB=-5.150e-01;SOR=2.494;VQSLOD=5.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:13:96:96,0,184
1	3646137	rs11589885	C	T	752.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.294;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.043;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-1.395;SB=-4.580e+02;SOR=0.316;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,28:49:99:781,0,619
1	3646192	rs1885867	G	A	707.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.973;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=8.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=1.075;SB=-3.810e+02;SOR=0.442;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:736,0,562
1	3646214	rs1885866	T	C	730.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.395;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-0.194;SB=-4.360e+02;SOR=0.391;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,29:46:99:759,0,394
1	3646291	rs1885865	G	A	527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=1.013;SB=-3.110e+02;SOR=0.569;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,22:33:99:556,0,302
1	3647962	rs1745813	T	C	2925.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-1.092e+03;SOR=1.661;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2954,217,0
1	3659657	rs2298222	G	A	576.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.524;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-0.655;SB=-1.990e+02;SOR=0.786;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,21:53:99:605,0,794
1	3662845	rs3737589	A	G	597.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.750;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.165;SB=-3.460e+02;SOR=0.794;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:44:99:626,0,457
1	3669201	rs10797410	A	G	2215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;DB;DP=187;Dels=0.00;ExcessHet=3.0103;FS=4.328;HaplotypeScore=2.5778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=2.155;SB=-1.320e+03;SOR=0.446;VQSLOD=6.01;culprit=DP	GT:AD:DP:GQ:PL	0/1:98,89:187:99:2244,0,2721
1	3669205	rs10910021	C	G	2335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=5.317;HaplotypeScore=2.5778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=2.095;SB=-1.346e+03;SOR=0.424;VQSLOD=5.64;culprit=DP	GT:AD:DP:GQ:PL	0/1:96,88:184:99:2364,0,2788
1	3672156	rs4648555	C	A	521.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.756;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.328;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-2.217;SB=-1.190e+02;SOR=0.985;VQSLOD=7.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,20:47:99:550,0,749
1	3673149	rs35440871	CAA	C	304.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.615;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=0.902;SB=-5.876e+01;SOR=0.223;VQSLOD=3.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:342,0,299
1	3673496	rs4648405	T	G	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.329;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=0.599;SB=0.00;SOR=0.784;VQSLOD=9.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:390,0,322
1	3677933	rs1181883	T	C	647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=3.229;HaplotypeScore=1.8937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.30;ReadPosRankSum=0.461;SB=-2.970e+02;SOR=1.118;VQSLOD=7.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,26:78:99:676,0,1441
1	3697663	rs11547615	C	T	449.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.408;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-0.406;SB=-5.000e+01;SOR=0.978;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,18:43:99:478,0,760
1	3701557	.	C	CA	47.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;DP=17;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.81;RPA=13,14;RU=A;ReadPosRankSum=-0.369;SB=-6.392e-01;SOR=1.911;STR;VQSLOD=4.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:85:85,0,178
1	3703337	rs2368537	G	C	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.933;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=2.156;SB=-1.115e+02;SOR=0.132;VQSLOD=6.58;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,11:16:99:331,0,162
1	3731965	rs12728401	G	A	1658.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.674;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-0.195;SB=-9.330e+02;SOR=0.761;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,63:122:99:1687,0,1448
1	3732103	rs4648409	T	C	2295.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-8.390e+02;SOR=1.949;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2324,181,0
1	3732172	rs4233019	C	T	1039.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-3.090e+02;SOR=2.432;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1068,81,0
1	3732496	rs4648411	C	T	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-0.707;SB=0.00;SOR=0.368;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:167,0,268
1	3732596	rs6662706	G	T	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.410;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.452;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.28;ReadPosRankSum=-1.432;SB=-1.150e+02;SOR=0.399;VQSLOD=6.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,13:38:99:305,0,776
1	3732639	rs6702916	T	A	1726.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-8.390e+02;SOR=1.220;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1755,132,0
1	3732707	rs6702935	T	C	2193.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=-1.090e+03;SOR=0.941;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2222,166,0
1	3732782	rs6703035	T	C	2164.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-1.270e+03;SOR=0.818;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2193,157,0
1	3742257	rs12759497	C	T	199.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.750;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=1.014;SB=-7.201e+01;SOR=0.121;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,8:21:99:228,0,428
1	3742560	rs2275835	G	A	625.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.371;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=6.884;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-0.423;SB=-2.630e+02;SOR=1.052;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,21:39:99:654,0,520
1	3743109	rs2275834	A	G	1085.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-5.260e+02;SOR=0.976;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:87:1114,87,0
1	3743132	rs4648344	T	C	593.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.185;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=0.529;SB=-2.090e+02;SOR=1.402;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,22:35:99:622,0,326
1	3743151	rs4648345	G	A	546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=0.975;SB=-2.440e+02;SOR=0.941;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,21:34:99:575,0,367
1	3743319	rs6663840	G	A	2000.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-1.298e+03;SOR=0.750;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2029,147,0
1	3743391	rs6688969	C	T	612.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.702;SB=-2.750e+02;SOR=0.582;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,24:47:99:641,0,574
1	3743433	.	T	TG	1244.73	PASS	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;RPA=2,3;RU=G;SB=-3.520e+02;SOR=2.019;STR;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:32:90:1282,90,0
1	3745787	rs2275832	T	C	1838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=-1.097e+03;SOR=0.976;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1867,132,0
1	3745924	rs2275831	G	A	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=1.355;SB=-7.201e+01;SOR=0.368;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:338,0,353
1	3746254	rs2275830	T	C	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=1.602;SB=0.00;SOR=2.494;VQSLOD=8.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:47:324,0,47
1	3746589	rs2275826	C	G	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=1.987;SB=-1.350e+02;SOR=0.627;VQSLOD=8.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,15:38:99:371,0,692
1	3747603	rs6413779	T	C	322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.603;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=-1.390;SB=-6.600e+01;SOR=0.610;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:351,0,274
1	3751728	.	G	GT	150.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=0.502;QD=11.59;RPA=10,11;RU=T;ReadPosRankSum=-0.564;SB=0.00;SOR=1.179;STR;VQSLOD=2.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:14:88:188,0,88
1	3753013	rs12746541	G	C	317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.5900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-0.680;SB=-1.320e+02;SOR=1.304;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:346,0,213
1	3755675	rs1891941	T	C	1641.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.438;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=3.497;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-0.517;SB=-6.850e+02;SOR=1.080;VQSLOD=8.25;culprit=DP	GT:AD:DP:GQ:PL	0/1:58,60:118:99:1670,0,1535
1	3755869	rs1891940	T	C	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:162,0,162
1	3759784	rs10797347	A	G	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.838;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=1.550;SB=-3.460e+02;SOR=0.512;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:416,0,403
1	3761650	rs2275821	A	G	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.040;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-0.739;SB=-9.800e+01;SOR=0.941;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:451,0,532
1	3765055	rs12239253	C	T	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.667;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=7.104;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.231;SB=-6.997e+01;SOR=0.052;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:309,0,408
1	3765095	rs371141201	CA	C	141.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=1.302;QD=3.46;RPA=16,15;RU=A;ReadPosRankSum=1.236;SB=-5.300e+01;SOR=0.503;STR;VQSLOD=1.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,13:41:99:179,0,511
1	3765424	rs10492943	G	T	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.418;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.029;SB=-1.330e+02;SOR=0.941;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:323,0,282
1	3769033	rs3819006	A	T	1168.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.192;SB=-3.630e+02;SOR=0.745;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,43:89:99:1197,0,1274
1	3769034	rs3819007	A	T	1187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.757;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-0.225;SB=-4.100e+02;SOR=0.674;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,45:88:99:1216,0,1134
1	3774130	rs34891610	A	G	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.99;ReadPosRankSum=-1.013;SB=-8.900e+01;SOR=0.465;VQSLOD=8.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,7:26:99:184,0,459
1	3774138	rs12723005	T	C	165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=-0.752;SB=-4.700e+01;SOR=0.922;VQSLOD=8.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,7:26:99:194,0,417
1	3774296	rs12722891	A	G	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.141;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-0.071;SB=-1.090e+02;SOR=0.205;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:240,0,364
1	3774312	rs12726906	T	C	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-1.401;SB=-1.245e+02;SOR=0.030;VQSLOD=7.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,9:18:99:208,0,303
1	3775454	rs4376673	C	G	483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.388;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-0.144;SB=-1.905e+01;SOR=1.714;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:512,0,445
1	3776989	rs12129902	C	T	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.827;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.965;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=1.083;SB=-9.732e-01;SOR=1.802;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:362,0,544
1	3800242	rs3205087	A	G	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=0.145;SB=-3.540e+02;SOR=0.719;VQSLOD=8.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,26:75:99:589,0,1396
1	3800480	rs7555538	G	T	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=0.816;SB=0.00;SOR=1.085;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:208,0,132
1	3807593	rs4274008	G	C	2659.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-1.303e+03;SOR=1.206;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2688,196,0
1	3809299	rs79308453	T	A	767.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.781;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.036;SB=-3.960e+02;SOR=0.631;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,30:53:99:796,0,658
1	4772053	rs1061968	T	C	889.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=-0.068;SB=-5.560e+02;SOR=0.693;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,34:48:99:918,0,303
1	4829881	rs2072902	G	A	189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.125;SB=-1.120e+02;SOR=0.223;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:218,0,146
1	4834420	rs12747519	C	T	526.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.117;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.627;SB=-3.100e+01;SOR=1.179;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:555,0,565
1	4847845	rs4654460	G	A	1071.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.040;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.785;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.116;SB=-5.540e+02;SOR=1.075;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,41:91:99:1100,0,1269
1	4847990	rs117150412	C	T	488.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.880;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.264;HaplotypeScore=1.9258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=0.775;SB=-2.460e+02;SOR=0.368;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:517,0,698
1	4848048	rs118072248	A	G	289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=0.417;SB=-1.170e+02;SOR=0.465;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:318,0,428
1	5623965	rs9439613	C	T	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=1.065;SB=-1.780e+02;SOR=0.815;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,16:38:99:378,0,689
1	5925371	rs1287634	G	A	289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=0.734;SB=-5.150e-01;SOR=3.516;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:318,0,243
1	5926507	rs555164	T	C	1639.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.546;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=2.252;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.046;SB=-9.560e+02;SOR=0.817;VQSLOD=8.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:66,61:128:99:1668,0,1539
1	5928133	rs78598342	C	T	755.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.835;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.809;SB=-1.980e+02;SOR=1.670;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:784,0,448
1	5934236	rs868162	C	T	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.344;SB=-1.765e+00;SOR=1.609;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:204,0,211
1	5934380	rs112284157	C	T	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.012;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.751;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-0.874;SB=-2.310e+02;SOR=1.477;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:680,0,486
1	5934490	rs868163	A	G	598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.315;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.232;SB=-3.900e+02;SOR=0.556;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,25:53:99:627,0,876
1	5934500	rs905467	T	C	541.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.127;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=0.650;SB=-3.580e+02;SOR=0.441;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,23:48:99:570,0,827
1	5935162	rs1287637	A	T	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.648;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-1.849;SB=-3.100e+01;SOR=0.919;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:262,0,399
1	5937091	rs1622955	T	C	354.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.560;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.139;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=-0.951;SB=-7.497e+01;SOR=0.129;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:383,0,262
1	5937168	rs3747992	G	A	1066.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=0.195;SB=-2.970e+02;SOR=0.773;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1095,0,823
1	5937391	rs3747989	C	T	1563.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.261;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=2.421;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-1.243;SB=-8.920e+02;SOR=0.475;VQSLOD=7.30;culprit=DP	GT:AD:DP:GQ:PL	0/1:57,65:122:99:1592,0,1368
1	5937413	rs3747988	A	C	1135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.887;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=4.295;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.284;SB=-6.070e+02;SOR=0.343;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,47:93:99:1164,0,1269
1	5939544	rs11121915	T	G	890.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.088;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-1.605;SB=-6.490e+02;SOR=0.521;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,37:60:99:919,0,673
1	5948677	rs2282281	G	A	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.49;ReadPosRankSum=0.034;SB=-9.400e+01;SOR=1.179;VQSLOD=7.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,8:22:99:193,0,403
1	5964991	rs3737234	T	C	545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.491;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-0.314;SB=-1.710e+02;SOR=0.569;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,22:51:99:574,0,848
1	6027167	rs875574	C	A	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.113;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-0.436;SB=-1.020e+02;SOR=0.602;VQSLOD=10.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:339,0,360
1	6027252	rs875573	A	G	623.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.527;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.202;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.131;SB=-3.430e+02;SOR=0.963;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,23:41:99:652,0,486
1	6029086	rs34702999	CA	C	154.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.212;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.87;RPA=15,14;RU=A;ReadPosRankSum=-1.336;SB=-4.664e+01;SOR=0.941;STR;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:13:9:191,9,0
1	6038583	rs4908639	G	C	701.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.222;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.177;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=-0.308;SB=-1.350e+02;SOR=0.214;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,25:43:99:730,0,545
1	6100458	rs12566866	G	A	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.973;SB=-4.176e+01;SOR=0.223;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:209,0,181
1	6100855	rs4908494	G	A	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.099;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-0.874;SB=0.00;SOR=0.693;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:246,0,275
1	6142308	rs2227911	T	C	2112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.064;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=3.677;HaplotypeScore=5.2014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-1.060;SB=-1.314e+03;SOR=0.668;VQSLOD=7.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,80:156:99:2141,0,1842
1	6142439	rs34308142	C	T	905.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.972;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.111;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.044;SB=-9.300e+01;SOR=1.303;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,31:67:99:934,0,1073
1	6156227	rs80278227	C	T	421.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.310;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.530;SB=-1.370e+02;SOR=0.507;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:35:99:450,0,495
1	6170424	rs78789357	CG	C	4887.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-1.971e+03;SOR=1.365;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,109:110:99:4925,328,0
1	6171992	rs59788818	C	A	1425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-4.350e+02;SOR=2.147;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1454,105,0
1	6172875	rs4908515	G	A	454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-3.876e+01;SOR=3.767;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:483,36,0
1	6184092	rs2843493	A	G	513.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-2.471e+02;SOR=1.371;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:542,39,0
1	6184192	rs2273041	A	G	270.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.62;SB=-1.205e+02;SOR=1.802;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:299,21,0
1	6184920	rs2273038	C	G	450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-1.195e+02;SOR=2.303;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:479,39,0
1	6185064	rs55930553	G	A	1146.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-4.500e+02;SOR=1.675;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1175,87,0
1	6185532	rs2273037	G	A	1707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=-6.500e+02;SOR=1.390;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1736,132,0
1	6188044	rs3215558	TG	T	394.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;RPA=6,5;RU=G;SB=0.00;SOR=5.136;STR;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:432,36,0
1	6188377	rs72632513	G	A	1119.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-3.050e+02;SOR=2.115;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1148,90,0
1	6188546	rs2273034	G	A	1891.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;SB=-7.320e+02;SOR=1.733;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1920,141,0
1	6188779	rs2273033	G	C	1740.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-6.550e+02;SOR=1.747;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1769,138,0
1	6195024	rs2746067	C	T	457.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.589;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-0.249;SB=-1.765e+00;SOR=1.714;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:486,0,517
1	6195493	rs2250504	G	A	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.06;ReadPosRankSum=0.148;SB=-3.000e+01;SOR=0.446;VQSLOD=9.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:94:94,0,261
1	6196869	rs2250358	A	G	1190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.130;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=1.404;SB=-7.000e+02;SOR=0.566;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,42:75:99:1219,0,803
1	6196943	rs2746066	A	G	952.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-1.610;SB=-4.940e+02;SOR=0.640;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,38:70:99:981,0,841
1	6196951	rs2785582	T	A	900.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-1.728;SB=-3.850e+02;SOR=0.788;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,37:67:99:929,0,790
1	6197092	rs17436753	A	G	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=-1.442;SB=0.00;SOR=1.179;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:275,0,164
1	6197107	rs58155258	G	A	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-1.434;SB=0.00;SOR=0.859;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:201,0,172
1	6204161	rs17436816	G	A	2217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=3.853;HaplotypeScore=2.4304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-0.871;SB=-1.421e+03;SOR=0.446;VQSLOD=7.66;culprit=DP	GT:AD:DP:GQ:PL	0/1:66,85:151:99:2246,0,1807
1	6204222	rs17489787	C	G	1755.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.441;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-1.496;SB=-1.133e+03;SOR=0.703;VQSLOD=7.64;culprit=DP	GT:AD:DP:GQ:PL	0/1:82,74:156:99:1784,0,2305
1	6204266	rs9435102	A	G	3900.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-1.788e+03;SOR=1.284;VQSLOD=3.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3929,286,0
1	6204411	rs57172726	G	A	410.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.82;ReadPosRankSum=-0.148;SB=0.00;SOR=1.863;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,13:18:99:439,0,109
1	6209363	rs12565328	T	C	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.042;SB=-1.060e+02;SOR=0.693;VQSLOD=10.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:248,0,276
1	6210970	rs12564469	G	A	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.571;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.984;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.620;SB=-5.800e+01;SOR=1.609;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:247,0,222
1	6211183	rs9434711	G	A	542.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.566;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-1.258;SB=-2.490e+02;SOR=0.352;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:571,0,337
1	6212843	rs2311388	T	C	151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=-2.114;SB=-4.076e+01;SOR=0.141;VQSLOD=7.40;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:180,0,277
1	6212870	rs1883604	G	A	59.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.98;ReadPosRankSum=-0.536;SB=0.00;SOR=0.223;VQSLOD=9.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:88:88,0,258
1	6215736	rs12074369	C	G	1834.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=1.392;SB=-1.031e+03;SOR=0.706;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,69:123:99:1863,0,1320
1	6228180	rs58385986	A	C	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.348;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=1.956;SB=-7.000e+01;SOR=2.303;VQSLOD=6.06;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,16:22:99:511,0,113
1	6241291	rs57677893	C	T	406.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.829;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=0.902;SB=-4.076e+01;SOR=0.352;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:435,0,295
1	6241321	rs80007835	G	A	469.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.448;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=2.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=1.496;SB=-2.801e+01;SOR=1.714;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:498,0,548
1	6247066	rs4908863	C	T	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=-0.618;SB=0.00;SOR=0.859;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:196,0,152
1	6253295	rs2311385	C	T	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=0.640;SB=0.00;SOR=0.368;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:154,0,290
1	6257826	rs2294714	T	C	114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.947;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.298;SB=-7.000e+01;SOR=0.693;VQSLOD=9.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:143,0,134
1	6257856	rs2294713	G	A	70.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=1.940;SB=-2.801e+01;SOR=0.693;VQSLOD=8.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:99:99,0,141
1	6272137	rs709208	A	G	421.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.531;SB=-1.580e+02;SOR=0.804;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,16:42:99:450,0,776
1	6278414	rs709209	A	G	926.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.230;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-0.572;SB=-5.100e+02;SOR=0.724;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,35:83:99:955,0,1251
1	6279370	rs846111	G	C	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=-1.357;SB=-1.340e+02;SOR=0.511;VQSLOD=8.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:27:99:269,0,465
1	6313938	rs12735670	C	T	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=4.925;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.617;SB=-3.230e+02;SOR=0.563;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,22:36:99:628,0,452
1	6314349	rs6696630	A	G	856.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-1.115e+02;SOR=3.442;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:885,66,0
1	6314479	rs12740426	C	T	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.251;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.516;SB=-8.097e+01;SOR=0.084;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:317,0,263
1	6314822	rs11590458	T	C	868.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.494;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-0.296;SB=-4.550e+02;SOR=1.141;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,33:62:99:897,0,687
1	6530965	.	C	CG	924.73	PASS	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=28.08;RPA=3,4;RU=G;SB=-3.660e+02;SOR=1.270;STR;VQSLOD=4.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:962,72,0
1	6579607	rs1556035	C	T	1568.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-4.850e+02;SOR=2.348;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1597,117,0
1	6585804	rs13513	C	T	300.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=0.00;SOR=4.804;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:329,27,0
1	6586070	rs7548042	C	T	1799.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-8.580e+02;SOR=1.392;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1828,132,0
1	6591937	rs932112	T	C	1003.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.05;SB=-8.297e+01;SOR=4.332;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:1032,75,0
1	6602223	rs5772238	AT	A	146.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;QD=16.30;RPA=16,15;RU=T;SB=0.00;SOR=4.615;STR;VQSLOD=2.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:10:26:184,26,0
1	6609559	rs11122091	C	A	591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-7.597e+01;SOR=3.383;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:620,48,0
1	6609851	rs10864622	A	G	1365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-5.330e+02;SOR=1.559;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1394,102,0
1	6609896	rs11579888	G	A	813.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.91;SB=-1.603e+02;SOR=2.925;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:842,63,0
1	6609958	rs11581831	C	T	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=0.00;SOR=4.977;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:399,30,0
1	6610366	rs2063805	T	C	670.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.46;SB=-8.297e+01;SOR=3.611;VQSLOD=4.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:699,51,0
1	6610382	rs2063806	C	T	823.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-8.097e+01;SOR=4.174;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:852,66,0
1	6614391	rs6693391	A	C	354.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.29;SB=-2.351e+02;SOR=0.836;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:383,27,0
1	6614415	rs6693400	A	G	404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-2.471e+02;SOR=0.836;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:433,33,0
1	6614535	rs4908923	G	A	290.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.08;SB=-1.603e+02;SOR=1.085;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:319,24,0
1	6615690	rs925745	A	G	668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-1.115e+02;SOR=3.056;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:697,51,0
1	6615695	rs925744	C	T	604.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-1.205e+02;SOR=2.948;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:633,48,0
1	6631319	rs11122096	G	A	640.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=0.00;SOR=5.784;VQSLOD=8.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:669,51,0
1	6635231	rs10864628	A	G	2388.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-9.740e+02;SOR=1.577;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2417,178,0
1	6636461	rs17492553	C	T	1006.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-0.838;SB=-4.860e+02;SOR=0.776;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,40:88:99:1035,0,1302
1	6637313	rs4908931	A	G	546.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-3.876e+01;SOR=4.047;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:575,42,0
1	6645867	rs6682920	G	A	1157.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-4.276e+01;SOR=5.610;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1186,93,0
1	6646959	rs3833475	GCCTGCCTTC	G	3435.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;RPA=2,1;RU=CCTGCCTTC;SB=-1.596e+03;SOR=1.022;STR;VQSLOD=6.42;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,33:51:99:3473,99,0
1	6659505	rs2232460	G	A	1537.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-5.850e+02;SOR=1.802;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1566,111,0
1	6661732	rs12028517	C	A	667.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=0.00;SOR=5.892;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:696,54,0
1	6677064	rs10779795	A	G	1077.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.70;SB=0.00;SOR=6.804;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:81:1106,81,0
1	6681263	.	A	G	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.34;ReadPosRankSum=1.834;SB=0.00;SOR=0.180;VQSLOD=7.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:87:87,0,275
1	6681275	rs12034227	A	C	518.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=0.00;SOR=5.549;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:547,42,0
1	6681744	rs3747994	C	T	1501.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-2.970e+02;SOR=2.935;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1530,114,0
1	6688639	rs138429240	C	T	764.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.116;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-0.632;SB=-2.850e+02;SOR=1.060;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,29:70:99:793,0,1201
1	6693097	rs3174820	A	G	1650.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-5.470e+02;SOR=1.848;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1679,126,0
1	6694207	rs12727844	A	G	3150.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-1.166e+03;SOR=1.839;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3179,232,0
1	6694257	rs146601847	A	C	403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=3.921;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.24;ReadPosRankSum=-0.599;SB=-1.020e+02;SOR=0.223;VQSLOD=7.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,17:49:99:432,0,1101
1	6694574	rs6804	G	A	1475.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-4.140e+02;SOR=2.303;VQSLOD=5.44;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1504,111,0
1	6695802	rs6577583	A	G	1793.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-8.030e+02;SOR=1.199;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1822,135,0
1	6700131	.	C	A	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;DP=28;Dels=0.00;ExcessHet=3.0103;FS=5.764;HaplotypeScore=23.1988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.21;ReadPosRankSum=1.032;SB=-2.657e-01;SOR=2.670;VQSLOD=4.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:28:99:258,0,257
1	6704635	rs200458	A	G	2426.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-1.317e+03;SOR=0.908;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2455,181,0
1	6711146	rs12145525	T	C	2499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=-1.608e+03;SOR=0.788;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2528,187,0
1	6712772	rs17365584	C	T	1581.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-2.401e+02;SOR=3.365;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1610,117,0
1	6761702	rs3761925	C	T	632.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-1.205e+02;SOR=2.948;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:661,51,0
1	7151505	rs45517936	G	A	894.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.824;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=5.863;HaplotypeScore=3.5261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.437;SB=-6.060e+02;SOR=0.289;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,39:82:99:923,0,1325
1	7202190	rs970973	T	C	861.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.013;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=1.237;SB=-3.960e+02;SOR=0.708;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,33:58:99:890,0,630
1	7289777	rs4243824	G	A	274.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.787;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.971;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.460;SB=-6.400e+01;SOR=1.675;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:303,0,271
1	7527996	rs1201529	T	C	301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.166;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=0.742;SB=-1.590e+02;SOR=1.473;VQSLOD=7.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,15:33:99:330,0,502
1	7737799	rs3011926	A	G	2891.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-9.530e+02;SOR=2.049;VQSLOD=7.06;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2920,211,0
1	7796553	rs140139043	C	T	542.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.363;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=5.840;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-0.515;SB=-2.960e+02;SOR=0.544;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,22:53:99:571,0,829
1	7798572	rs145943085	G	A	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.222;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-0.952;SB=-3.400e+01;SOR=0.340;VQSLOD=9.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:190,0,363
1	7826347	rs697672	C	T	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.946;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.489;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.443;SB=-2.370e+02;SOR=0.382;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,21:34:99:545,0,340
1	7833370	.	G	A	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.71;ReadPosRankSum=0.456;SB=0.00;SOR=1.270;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:89:245,0,89
1	7833485	rs11576572	G	A	548.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.966;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-0.102;SB=-1.930e+02;SOR=0.922;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:577,0,432
1	7845695	rs228729	T	C	538.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.945;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.418;HaplotypeScore=2.6159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=1.583;SB=-3.200e+01;SOR=2.093;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:567,0,339
1	7847362	.	C	CT	543.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;DP=45;ExcessHet=3.0103;FS=7.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.36;RPA=6,7;RU=T;ReadPosRankSum=0.787;SB=-1.172e+02;SOR=0.113;STR;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,22:45:99:581,0,505
1	7854209	rs11807683	C	T	570.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.015;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.960;SB=-6.800e+01;SOR=0.512;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,19:42:99:599,0,694
1	7861153	.	C	CT	287.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.22;RPA=3,4;RU=T;ReadPosRankSum=-0.469;SB=-8.300e+01;SOR=0.484;STR;VQSLOD=6.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,12:38:99:325,0,692
1	7861345	rs488728	G	A	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.056;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-2.195;SB=-4.076e+01;SOR=0.193;VQSLOD=8.82;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,12:24:99:374,0,408
1	7863293	rs228642	C	T	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-0.391;SB=-1.765e+00;SOR=0.446;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:249,0,380
1	7869915	rs228668	G	C	648.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.455;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.361;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-1.456;SB=-1.270e+02;SOR=1.123;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,21:47:99:677,0,684
1	7870048	rs228669	T	C	1281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=2.362;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.033;SB=-9.720e+02;SOR=0.615;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,61:118:99:1310,0,1404
1	7870144	rs228670	A	C	793.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.122;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=10.167;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=-0.449;SB=-1.080e+02;SOR=2.143;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,27:69:99:822,0,1119
1	7879685	rs17374230	T	C	256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=-1.053;SB=0.00;SOR=1.609;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:285,0,110
1	7880469	rs228691	A	G	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.730;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-0.836;SB=-1.750e+02;SOR=0.741;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:407,0,286
1	7880683	rs10462020	T	G	1054.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.083;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.894;HaplotypeScore=2.4787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.021;SB=-5.640e+02;SOR=0.683;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,36:75:99:1083,0,1088
1	7887493	rs228696	T	C	926.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.528;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=1.145;SB=-4.270e+02;SOR=0.645;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,34:74:99:955,0,1010
1	7889804	rs228701	C	G	704.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.158;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.211;SB=-1.340e+02;SOR=0.840;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:733,0,811
1	7890264	rs1773135	A	G	1181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.859;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.915;HaplotypeScore=3.7877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.532;SB=-4.020e+02;SOR=0.517;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1210,0,1357
1	7897133	rs10462021	A	G	793.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=0.561;SB=-4.850e+02;SOR=0.649;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,31:48:99:822,0,383
1	7906476	rs172932	G	T	1357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.418;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.381;SB=-7.230e+02;SOR=0.677;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,57:112:99:1386,0,1384
1	7906859	rs370036202	T	TAAGA	2469.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.37;RPA=1,2;RU=AAGA;ReadPosRankSum=-1.173;SB=-1.228e+03;SOR=0.691;STR;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,41:79:99:2507,0,1935
1	7909737	rs2890565	C	T	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.936;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=1.049;SB=-2.260e+02;SOR=1.051;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:504,0,539
1	7913184	rs34962249	CA	C	275.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=1.113;QD=7.66;RPA=16,15;RU=A;ReadPosRankSum=0.492;SB=-4.000e+01;SOR=0.826;STR;VQSLOD=1.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,19:44:99:313,0,325
1	7998963	rs226476	T	G	2653.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-8.450e+02;SOR=2.038;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2682,193,0
1	8022772	rs144768319	CAG	C	721.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.07;ReadPosRankSum=-0.508;SB=-5.976e+01;SOR=0.446;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:759,0,460
1	8384268	rs6702047	T	C	837.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-3.540e+02;SOR=1.382;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:866,63,0
1	8390246	rs12565834	T	C	1157.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-6.660e+02;SOR=0.850;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1186,87,0
1	8390888	rs2289731	G	A	2103.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-1.255e+03;SOR=0.814;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2132,160,0
1	8395441	rs2305016	T	C	1377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-3.230e+02;SOR=2.476;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1406,105,0
1	8415235	rs1889854	C	T	828.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.032;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-1.754;SB=-4.540e+02;SOR=0.484;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,33:60:99:857,0,697
1	8415290	rs1889853	C	A	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.569;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-0.561;SB=-1.690e+02;SOR=0.317;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:436,0,539
1	8415418	rs2289733	G	A	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.272;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=0.000;SB=-6.100e+01;SOR=0.941;VQSLOD=8.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,6:18:99:156,0,372
1	8418644	rs11121172	C	A	1063.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-6.380e+02;SOR=0.693;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1092,81,0
1	8418650	rs1058766	T	C	1069.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;SB=-6.970e+02;SOR=0.746;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:81:1098,81,0
1	8421092	rs2784735	C	T	168.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-0.748;SB=-5.600e+01;SOR=1.245;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:197,0,248
1	8421203	rs13596	T	C	526.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.11;SB=-2.590e+02;SOR=0.818;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:555,42,0
1	8422676	rs2252865	T	C	1580.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-5.320e+02;SOR=1.880;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1609,117,0
1	8424039	rs9628991	C	G	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.629;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=-0.151;SB=0.00;SOR=1.371;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:341,0,189
1	8425798	rs3765972	C	T	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=8.921;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.75;ReadPosRankSum=-1.679;SB=-8.097e+01;SOR=0.022;VQSLOD=5.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:129,0,289
1	8425900	rs3753275	T	C	367.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.435;SB=-2.090e+02;SOR=0.804;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:396,0,378
1	8526142	rs4908760	G	A	721.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.525;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=2.747;SB=-2.660e+02;SOR=1.528;VQSLOD=6.60;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,26:44:99:750,0,414
1	8555372	.	A	AT	80.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=0.549;QD=6.73;RPA=15,16;RU=T;ReadPosRankSum=0.547;SB=-3.077e+01;SOR=0.293;STR;VQSLOD=1.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,7:16:70:118,0,70
1	8557320	rs7518608	C	G	426.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.438;SB=-4.276e+01;SOR=0.255;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:455,0,413
1	8557691	rs7530745	A	C	628.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.884;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=0.590;SB=-7.000e+01;SOR=1.214;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,21:35:99:657,0,402
1	8926752	rs2781065	T	C	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.476;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=-0.990;SB=0.00;SOR=0.756;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:560,0,505
1	8928125	rs2071412	G	T	660.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.348;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.776;SB=-4.460e+02;SOR=0.701;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,29:62:99:689,0,875
1	8930369	rs2781060	T	C	768.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.492;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=-0.616;SB=-1.820e+02;SOR=1.112;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,25:38:99:797,0,318
1	8930385	rs2765511	G	A	877.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.376;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=-0.391;SB=-2.440e+02;SOR=1.121;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,29:45:99:906,0,365
1	8935149	rs2038904	A	G	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=-1.459;SB=-3.677e+01;SOR=0.346;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:282,0,200
1	9009214	rs2274326	C	T	571.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.401;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=-1.087;SB=-7.101e+01;SOR=0.407;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:600,0,529
1	9009406	rs2274327	C	T	1417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=4.989;HaplotypeScore=2.3869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=0.249;SB=-8.960e+02;SOR=0.359;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,53:100:99:1446,0,1179
1	9009444	rs2274328	A	C	2706.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-1.291e+03;SOR=1.329;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2735,196,0
1	9009451	rs2274329	G	C	955.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.984;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=3.315;HaplotypeScore=1.9557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.373;SB=-2.920e+02;SOR=1.201;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,34:78:99:984,0,1230
1	9009470	rs2274330	G	C	754.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.583;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.247;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-0.515;SB=-2.170e+02;SOR=1.167;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,29:71:99:783,0,1207
1	9009547	rs2274331	C	A	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.908;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.46;ReadPosRankSum=-0.687;SB=-9.100e+01;SOR=0.531;VQSLOD=7.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,13:41:99:334,0,891
1	9011537	rs7540307	G	A	1303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-0.796;SB=-8.440e+02;SOR=0.629;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,53:108:99:1332,0,1433
1	9011586	rs3765968	T	G	3252.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-1.763e+03;SOR=0.916;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3281,244,0
1	9011627	rs3765967	G	A	1154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-0.629;SB=-6.610e+02;SOR=0.675;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,49:101:99:1183,0,1392
1	9011722	rs3765966	G	T	1614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-7.340e+02;SOR=1.480;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1643,120,0
1	9017204	rs2274333	A	G	1250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.373;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=1.577;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-0.868;SB=-6.370e+02;SOR=0.511;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,53:117:99:1279,0,1905
1	9030964	rs3737665	C	T	1281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.517;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.910;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=0.764;SB=-4.700e+02;SOR=1.080;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,43:87:99:1310,0,1100
1	9034301	rs72641578	T	C	576.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.989;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.807;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.860;SB=-3.800e+02;SOR=0.293;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:605,0,476
1	9034421	rs3765964	G	A	616.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.364;SB=-4.280e+02;SOR=0.751;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,26:47:99:645,0,593
1	9034598	rs3765963	A	G	732.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.949;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.092;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.872;SB=-3.800e+02;SOR=0.922;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,26:49:99:761,0,591
1	9034815	rs3831911	C	CAGA	376.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DB;DP=26;ExcessHet=3.0103;FS=6.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.07;RPA=1,2;RU=AGA;ReadPosRankSum=0.730;SB=-3.900e+01;SOR=2.247;STR;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,8:26:99:414,0,898
1	9063602	rs4908804	G	C	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-2.317;SB=-3.500e+01;SOR=0.836;VQSLOD=8.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:249,0,197
1	9070178	rs67090552	A	G	571.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=23.1733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-0.798;SB=-2.170e+02;SOR=0.974;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,23:39:99:600,0,207
1	9073801	rs7537425	C	T	835.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.752;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.113;SB=-2.000e+02;SOR=0.881;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,31:62:99:864,0,890
1	9074932	rs1556757	G	A	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.930;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-0.318;SB=-9.732e-01;SOR=1.609;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,7:20:99:233,0,391
1	9079154	rs12031065	C	T	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.34;ReadPosRankSum=0.980;SB=0.00;SOR=0.180;VQSLOD=9.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:87:87,0,292
1	9079365	rs10864379	G	A	808.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.867;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.040;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-1.144;SB=-4.840e+02;SOR=0.538;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,32:55:99:837,0,636
1	9084924	rs2027222	T	C	1251.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=-1.851e+02;SOR=3.383;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1280,93,0
1	9085006	.	G	GGCCCACCTTGT	2677.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;DP=74;ExcessHet=3.0103;FS=5.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.04;RPA=3,4;RU=GCCCACCTTGT;ReadPosRankSum=1.494;SB=-5.840e+02;SOR=1.536;STR;VQSLOD=5.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,22:74:99:2715,0,3890
1	9085279	rs12072306	C	T	352.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.135;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.60;ReadPosRankSum=0.951;SB=0.00;SOR=1.179;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:381,0,205
1	9098742	rs11121306	G	A	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.926;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=0.491;SB=-1.370e+02;SOR=0.454;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:718,0,626
1	9118423	rs17842190	C	T	943.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.630;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=0.940;SB=-4.200e+02;SOR=0.954;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,34:56:99:972,0,565
1	9188989	rs114206792	A	G	64.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.89;ReadPosRankSum=0.980;SB=-1.765e+00;SOR=0.693;VQSLOD=9.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:93:93,0,237
1	9299947	rs2268176	T	G	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.963;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=-0.710;SB=-8.097e+01;SOR=0.257;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:430,0,228
1	9304978	rs139855605	CCCCAGGCA	C	1719.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQ0=0;MQRankSum=0.853;POSITIVE_TRAIN_SITE;QD=22.24;RPA=2,1;RU=CCCAGGCA;ReadPosRankSum=1.619;SB=-3.380e+02;SOR=0.593;STR;VQSLOD=3.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,18:29:99:1757,0,1100
1	9306849	rs2310925	T	C	2104.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-2.390e+02;SOR=3.804;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2133,157,0
1	9307033	rs7524046	G	A	2579.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;DB;DP=207;Dels=0.00;ExcessHet=3.0103;FS=1.691;HaplotypeScore=4.0162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.565;SB=-1.546e+03;SOR=0.610;VQSLOD=6.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:106,101:207:99:2608,0,2712
1	9307138	rs11121350	T	C	1666.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.111;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=2.306;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-0.351;SB=-8.120e+02;SOR=0.474;VQSLOD=7.57;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,69:141:99:1695,0,2042
1	9307230	rs12032814	T	A	819.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.647;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=1.624;SB=-1.765e+00;SOR=2.139;VQSLOD=6.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,25:44:99:848,0,619
1	9323463	.	C	CTGAGGCAG	1090.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.73;RPA=1,2;RU=TGAGGCAG;ReadPosRankSum=0.260;SB=0.00;SOR=0.446;STR;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:1128,0,1497
1	9323910	rs6688832	G	A	1304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.636;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.765;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-0.640;SB=-7.180e+02;SOR=0.740;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,48:95:99:1333,0,1214
1	9324213	rs17368528	C	T	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=14.179;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.70;ReadPosRankSum=-1.624;SB=-6.600e+01;SOR=2.074;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,13:37:99:350,0,682
1	9324571	rs9434742	T	C	1643.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-9.400e+02;SOR=0.841;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1672,123,0
1	9324670	rs9434743	A	G	1834.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-1.019e+03;SOR=0.922;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1863,141,0
1	9416151	rs9435243	G	A	2842.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-11.428;DB;DP=213;Dels=0.00;ExcessHet=3.0103;FS=9.995;HaplotypeScore=1.8939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-1.222;SB=-1.363e+03;SOR=1.005;VQSLOD=1.75;culprit=DP	GT:AD:DP:GQ:PL	0/1:107,106:213:99:2871,0,3045
1	9416747	rs11591181	A	T	1293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.365;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-0.524;SB=-6.530e+02;SOR=0.616;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,50:100:99:1322,0,1427
1	9416852	rs12760778	A	G	732.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.937;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.937;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=-2.327;SB=-2.940e+02;SOR=0.326;VQSLOD=7.77;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,26:46:99:761,0,574
1	9658465	rs9430181	T	G	3409.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.94;SB=-7.770e+02;SOR=2.761;VQSLOD=2.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3438,250,0
1	9658707	rs9430182	G	A	3963.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.97;SB=-2.750e+02;SOR=5.038;VQSLOD=3.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:106:99:3992,298,0
1	9658809	rs9430183	A	G	604.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=0.00;SOR=5.670;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:633,48,0
1	9661061	rs9430184	A	G	265.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.58;SB=-1.115e+02;SOR=1.609;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:294,21,0
1	9670483	rs4244632	T	A	756.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-3.680e+02;SOR=1.358;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:57:785,57,0
1	9670834	rs4926472	C	T	1365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-7.950e+02;SOR=1.022;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1394,99,0
1	9672091	rs4073293	G	A	581.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=0.00;SOR=5.670;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:610,48,0
1	9714177	rs7511971	G	A	1662.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.532;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.717;HaplotypeScore=4.1141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=0.597;SB=-8.810e+02;SOR=0.904;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,64:117:99:1691,0,1410
1	9714247	rs9430611	A	G	1255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=0.832;SB=-7.440e+02;SOR=0.646;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:85,51:136:99:1284,0,2252
1	9714538	.	GT	G	532.73	PASS	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.34;SB=0.00;SOR=5.784;VQSLOD=4.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:27:51:570,51,0
1	9714540	.	G	GAGGCCAGACC	2031.73	PASS	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.85;SB=0.00;SOR=5.784;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:2069,51,0
1	9714542	rs201016347	G	C	666.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.46;SB=0.00;SOR=5.784;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:695,51,0
1	9714544	rs201683448	A	G	667.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.02;SB=0.00;SOR=5.784;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:696,51,0
1	9775460	rs72633866	G	A	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-0.051;SB=0.00;SOR=0.693;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:266,0,275
1	9779871	rs9430220	T	C	578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=0.00;SOR=5.549;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:607,45,0
1	9781643	rs140468930	C	T	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=6.690;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.176;SB=-1.205e+02;SOR=0.041;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:300,0,340
1	9782766	rs10864435	C	T	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.651;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.786;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=-1.649;SB=-1.030e+02;SOR=1.930;VQSLOD=6.85;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,12:19:99:355,0,210
1	9784423	rs11121484	C	T	981.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.413;SB=-4.970e+02;SOR=0.653;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,39:79:99:1010,0,1047
1	9786845	rs12037599	G	C	532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-0.648;SB=-2.000e+02;SOR=0.752;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:561,0,660
1	9792105	.	G	GA	477.73	PASS	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.10;RPA=9,10;RU=A;SB=0.00;SOR=5.784;STR;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:21:51:515,51,0
1	9794305	rs12568720	C	T	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.244;SB=-1.765e+00;SOR=2.387;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:334,0,199
1	9794982	rs11121485	C	T	1102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.982;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.555;HaplotypeScore=1.9984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-2.680;SB=-4.880e+02;SOR=0.368;VQSLOD=7.08;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,43:73:99:1131,0,799
1	9795250	rs11121486	G	A	630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-0.253;SB=-2.870e+02;SOR=0.603;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,22:53:99:659,0,877
1	9795719	rs12569008	C	T	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.895;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=0.087;SB=0.00;SOR=0.223;VQSLOD=9.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,8:25:99:244,0,553
1	9801341	rs10864436	G	A	1012.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.976;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.804;SB=-3.960e+02;SOR=0.459;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,40:89:99:1041,0,1398
1	9804693	rs7550295	C	T	791.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.017;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=11.050;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.404;SB=-5.150e-01;SOR=3.572;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,24:43:99:820,0,510
1	9811541	rs11674	A	G	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.631;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=-0.217;SB=-1.370e+02;SOR=0.283;VQSLOD=7.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,15:39:99:363,0,702
1	9815372	rs78589157	G	A	375.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.452;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.88;ReadPosRankSum=-0.234;SB=-6.000e+01;SOR=1.765;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:404,0,124
1	9816620	rs6680090	T	C	1659.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-4.960e+02;SOR=2.004;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1688,126,0
1	9833292	rs376794747	C	T	935.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.896;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.857;SB=-3.880e+02;SOR=0.763;VQSLOD=7.67;culprit=SOR	GT:AD:DP:GQ:PL	0/1:48,38:86:99:964,0,1346
1	10036009	rs12082318	G	A	129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=2.260;SB=0.00;SOR=0.693;VQSLOD=9.35;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:158,0,168
1	10068111	rs372996268	CA	C	105.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=1.447;QD=4.60;RPA=14,13;RU=A;ReadPosRankSum=1.078;SB=-5.468e+00;SOR=0.610;STR;VQSLOD=1.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,11:23:99:143,0,231
1	10190924	.	A	G	410.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.384;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.67;ReadPosRankSum=-0.369;SB=-2.070e+02;SOR=0.941;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:439,0,330
1	10228023	.	G	T	767.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.214;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.59;ReadPosRankSum=0.779;SB=-2.520e+02;SOR=0.793;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,30:61:99:796,0,933
1	10332156	.	G	C	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.80;ReadPosRankSum=0.976;SB=0.00;SOR=0.551;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:169,0,213
1	10335315	rs6685773	G	A	515.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-1.871e+02;SOR=1.609;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:544,42,0
1	10342629	rs3748576	G	A	459.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.041;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=0.089;SB=-1.010e+02;SOR=0.716;VQSLOD=10.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:488,0,371
1	10357206	rs199617049	AT	A	130.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.04;RPA=17,16;RU=T;ReadPosRankSum=-2.673;SB=-8.200e+01;SOR=0.486;STR;VQSLOD=4.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,13:48:99:168,0,543
1	10384176	.	C	CTTGAAA	2040.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=0.818;QD=26.85;ReadPosRankSum=-0.651;SB=-6.710e+02;SOR=0.552;VQSLOD=2.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,24:38:99:2078,0,1209
1	10394536	rs2276100	C	G	1512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.327;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=-0.355;SB=-4.320e+02;SOR=0.846;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,53:89:99:1541,0,989
1	10402009	rs33942183	CA	C	64.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.47;RPA=17,16;RU=A;ReadPosRankSum=0.755;SB=0.00;SOR=1.609;STR;VQSLOD=8.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,7:10:48:102,0,48
1	10403482	rs1556916	G	A	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.89;ReadPosRankSum=1.704;SB=-9.732e-01;SOR=0.976;VQSLOD=8.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:146,0,467
1	10420742	.	CA	C	96.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=1.054;QD=5.09;RPA=18,17;RU=A;ReadPosRankSum=-0.817;SB=0.00;SOR=0.793;STR;VQSLOD=1.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,10:19:99:134,0,118
1	10420918	rs3748578	G	A	1143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.094;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=1.507;HaplotypeScore=2.9322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-0.306;SB=-6.980e+02;SOR=0.842;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,48:115:99:1172,0,2006
1	10420937	rs3748579	C	T	1266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-0.227;SB=-8.520e+02;SOR=0.680;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:69,54:123:99:1295,0,2017
1	10425117	rs34161257	AT	A	245.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;DB;DP=19;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=0.079;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.93;RPA=8,7;RU=T;ReadPosRankSum=0.169;SB=-8.551e+01;SOR=0.093;STR;VQSLOD=0.023;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,12:19:99:283,0,162
1	10428452	rs12130563	G	A	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.546;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-2.775;SB=0.00;SOR=0.693;VQSLOD=8.67;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:300,0,279
1	10431158	rs17411502	T	C	610.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.079;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.046;SB=-2.300e+02;SOR=1.030;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,23:52:99:639,0,722
1	10435170	rs11121551	T	C	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-0.566;SB=-8.500e+01;SOR=0.941;VQSLOD=10.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:216,0,271
1	10435324	rs11121552	C	A	455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.042;HaplotypeScore=3.5332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.01;ReadPosRankSum=-0.076;SB=-2.460e+02;SOR=0.468;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,22:67:99:484,0,1123
1	10459779	rs3737155	G	A	842.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=5.264;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.634;SB=-4.330e+02;SOR=0.247;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,32:67:99:871,0,1026
1	10460485	rs1049887	T	C	515.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.795;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-0.422;SB=-8.700e+01;SOR=0.495;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:544,0,663
1	10460716	.	A	AT	234.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;DP=26;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.21;RPA=11,12;RU=T;ReadPosRankSum=1.539;SB=-1.769e+00;SOR=1.885;STR;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:26:99:272,0,202
1	10471789	rs2236678	A	T	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=-0.977;SB=0.00;SOR=0.836;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:239,0,208
1	10473196	rs2229687	C	T	920.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.978;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.035;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-0.141;SB=-2.190e+02;SOR=0.853;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,33:74:99:949,0,1222
1	10478830	rs370777082	CA	C	63.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.759;QD=2.06;RPA=17,16;RU=A;ReadPosRankSum=0.909;SB=-9.732e-01;SOR=1.314;STR;VQSLOD=1.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,10:34:99:101,0,358
1	10479635	rs2298570	C	G	1722.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.108;SB=-9.610e+02;SOR=0.739;VQSLOD=7.89;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,67:139:99:1751,0,2012
1	10479678	rs1889309	G	A	1688.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=1.326;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.440;SB=-1.051e+03;SOR=0.728;VQSLOD=7.50;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,68:144:99:1717,0,2082
1	10490599	.	G	A	150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.0769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.71;ReadPosRankSum=0.618;SB=-6.300e+01;SOR=1.206;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:179,0,102
1	10502307	rs33919161	AT	A	316.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;RPA=10,9;RU=T;SB=-5.597e+01;SOR=2.833;STR;VQSLOD=3.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:354,39,0
1	10511544	rs628462	C	T	827.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-3.710e+02;SOR=1.609;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:856,63,0
1	10511589	rs666103	T	C	653.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-1.553e+02;SOR=2.636;VQSLOD=4.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:682,54,0
1	10529194	rs2781233	T	C	1601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-3.230e+02;SOR=3.033;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1630,117,0
1	10555257	rs622623	C	T	768.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=-3.190e+02;SOR=1.781;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:57:797,57,0
1	10596388	rs2480779	A	G	1492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-6.180e+02;SOR=1.659;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1521,108,0
1	10659240	rs199609849	A	G	985.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.510;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=6.440;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.29;ReadPosRankSum=0.528;SB=-3.460e+02;SOR=1.393;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,34:69:99:1014,0,924
1	10678488	rs284238	A	T	772.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=10.045;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-0.145;SB=-3.120e+02;SOR=1.635;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,32:73:99:801,0,1068
1	10678610	rs284237	G	A	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.07;ReadPosRankSum=1.053;SB=-9.732e-01;SOR=0.641;VQSLOD=8.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,5:25:99:130,0,667
1	10703203	rs371904621	G	GC	530.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQ0=0;MQRankSum=0.967;QD=21.23;ReadPosRankSum=-0.849;SB=-1.280e+02;SOR=0.593;VQSLOD=2.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,14:25:99:568,0,405
1	10706091	rs284242	G	C	558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.832;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.088;SB=-4.176e+01;SOR=0.203;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:587,0,650
1	10708142	rs778228	A	G	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.117;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.640;HaplotypeScore=1.7876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=2.032;SB=-2.210e+02;SOR=0.320;VQSLOD=7.61;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,24:36:99:660,0,315
1	10709267	rs12143134	C	T	714.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-0.418;SB=-3.430e+02;SOR=0.542;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,23:46:99:743,0,604
1	10709309	rs284300	C	G	733.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.698;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.215;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.473;SB=-4.370e+02;SOR=0.434;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,26:58:99:762,0,866
1	10709441	rs284299	C	T	570.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.507;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=1.131;SB=-3.170e+02;SOR=0.641;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,26:53:99:599,0,766
1	10710849	.	G	GC	420.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;DP=31;ExcessHet=3.0103;FS=6.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.02;RPA=2,3;RU=C;ReadPosRankSum=0.084;SB=-5.800e+01;SOR=2.247;STR;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:31:99:458,0,615
1	10713765	rs284294	T	C	438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.050;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=0.396;SB=-2.650e+02;SOR=0.269;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:37:99:467,0,587
1	10714330	.	A	AC	1530.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;DP=112;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.04;RPA=1,2;RU=C;ReadPosRankSum=1.548;SB=-4.830e+02;SOR=0.985;STR;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,42:112:99:1568,0,2527
1	10718731	rs150195305	CCTCTG	C	943.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.27;RPA=3,2;RU=CTCTG;ReadPosRankSum=1.550;SB=-2.070e+02;SOR=0.765;STR;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:38:99:981,0,1218
1	10725498	rs284322	G	A	706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=9.971;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=3.097;SB=-2.740e+02;SOR=1.319;VQSLOD=5.30;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,26:53:99:735,0,719
1	11008497	rs1281017	G	C	1181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.717;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-0.055;SB=-6.760e+02;SOR=0.725;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,45:87:99:1210,0,1136
1	11008695	rs17036032	T	C	554.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.011;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.146;SB=-2.570e+02;SOR=0.793;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,19:51:99:583,0,1029
1	11014118	rs45537241	C	T	662.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.351;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-0.144;SB=-3.090e+02;SOR=1.293;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,28:59:99:691,0,1017
1	11015165	rs75130475	A	G	1164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.456;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.942;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=0.310;SB=-7.390e+02;SOR=0.612;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,43:69:99:1193,0,633
1	11015325	rs41274492	C	T	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.928;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.42;ReadPosRankSum=0.258;SB=-3.500e+01;SOR=1.508;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,15:23:99:475,0,229
1	11017022	rs373422493	C	CAG	931.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;DB;DP=60;ExcessHet=3.0103;FS=3.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.79;RPA=1,2;RU=AG;ReadPosRankSum=0.141;SB=-4.270e+02;SOR=0.690;STR;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,22:60:99:969,0,1706
1	11017609	rs7511959	T	C	485.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=1.160;SB=-3.400e+01;SOR=1.136;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:514,0,332
1	11017617	rs34691090	G	C	543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.595;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=1.425;SB=-3.200e+01;SOR=1.670;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:572,0,397
1	11017634	rs35950437	C	T	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.639;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.709;SB=-6.700e+01;SOR=0.746;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,21:41:99:628,0,628
1	11018723	rs60676743	A	G	1878.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.186;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.120;SB=-1.013e+03;SOR=0.638;VQSLOD=7.92;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,71:142:99:1907,0,2064
1	11024353	rs6659231	A	G	1237.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-6.530e+02;SOR=1.206;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:90:1266,90,0
1	11024381	rs6659326	A	G	901.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.18;SB=-4.540e+02;SOR=1.473;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:66:930,66,0
1	11024395	rs11121663	T	C	769.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-3.160e+02;SOR=1.697;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:798,57,0
1	11073654	.	C	A	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=1.157;QD=12.14;ReadPosRankSum=0.643;SB=-1.030e+02;SOR=0.829;VQSLOD=2.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,12:26:99:344,0,382
1	11079077	rs2273348	A	G	458.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-3.377e+01;SOR=3.767;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:487,36,0
1	11080723	rs70977536	T	TG	885.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.29;MQ0=0;QD=32.61;RPA=2,3;RU=G;SB=-1.295e+02;SOR=3.352;STR;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:25:69:923,69,0
1	11086097	.	A	AT	1869.73	PASS	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.81;RPA=1,2;RU=T;SB=-4.130e+02;SOR=2.531;STR;VQSLOD=5.92;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1907,126,0
1	11086179	rs77582207	T	C	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.776;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-2.082;SB=-7.697e+01;SOR=0.223;VQSLOD=7.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,10:15:99:260,0,160
1	11087524	rs1782455	G	A	4051.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-1.859e+03;SOR=0.874;VQSLOD=5.48;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,142:146:99:4080,304,0
1	11090916	rs12711521	C	A	1827.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-6.780e+02;SOR=1.649;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1856,138,0
1	11095039	rs6695096	C	T	413.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-1.931e+02;SOR=1.329;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:442,33,0
1	11105106	rs2273345	C	T	993.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.59;SB=-3.010e+02;SOR=1.863;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1022,81,0
1	11105122	rs2273344	C	T	1031.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-3.040e+02;SOR=1.863;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1060,78,0
1	11106666	MASP2base_D0056	T	C	1336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.554;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=3.619;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.288;SB=-6.900e+02;SOR=1.051;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,50:103:99:1365,0,1322
1	11119135	rs743577	G	A	351.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-7.497e+01;SOR=2.494;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:380,30,0
1	11126569	rs2791659	C	A	474.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=0.00;SOR=5.283;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:503,39,0
1	11126941	rs6701726	C	T	741.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-1.503e+02;SOR=2.833;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:770,57,0
1	11128001	rs2791657	A	G	621.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-1.245e+02;SOR=3.056;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:650,51,0
1	11128654	rs2791655	G	A	1500.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-6.770e+02;SOR=1.519;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1529,111,0
1	11129848	rs2791653	A	G	577.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.14;SB=-3.876e+01;SOR=4.047;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:606,45,0
1	11132217	rs1130683	G	A	1010.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-5.300e+02;SOR=1.022;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1039,78,0
1	11134157	rs2748876	T	G	1223.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.96;SB=-5.810e+02;SOR=0.869;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:96:1252,96,0
1	11137778	rs2259886	C	T	481.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-7.797e+01;SOR=3.126;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:510,39,0
1	11141187	rs2258621	C	G	2993.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-1.303e+03;SOR=1.514;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3022,232,0
1	11187893	rs1770344	T	C	1336.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-3.630e+02;SOR=2.303;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1365,102,0
1	11205058	rs1057079	C	T	2070.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-8.800e+02;SOR=1.609;VQSLOD=7.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,67:68:99:2099,154,0
1	11288618	rs4845985	G	A	1062.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.08;SB=-1.653e+02;SOR=3.334;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1091,87,0
1	11288633	rs4845986	G	C	1349.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-2.471e+02;SOR=3.026;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1378,102,0
1	11288758	rs1064261	G	A	3721.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-1.759e+03;SOR=1.342;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3750,277,0
1	11292666	rs10864495	T	A	685.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=0.00;SOR=5.994;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:714,57,0
1	11293577	rs28730690	G	A	1105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.661;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.049;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=-0.682;SB=-3.170e+02;SOR=0.988;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,39:69:99:1134,0,765
1	11294474	rs718206	T	A	731.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.46;SB=-7.197e+01;SOR=3.716;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:760,57,0
1	11297762	rs7524202	T	C	1756.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-8.470e+02;SOR=1.382;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1785,129,0
1	11298790	rs2024627	T	C	339.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-4.276e+01;SOR=3.258;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:368,27,0
1	11301714	rs1135172	A	G	3699.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-1.844e+03;SOR=0.984;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3728,277,0
1	11317320	rs2092642	C	T	1285.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-1.145e+02;SOR=4.235;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1314,99,0
1	11318763	rs2076657	C	G	581.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=0.00;SOR=5.549;VQSLOD=8.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:45:610,45,0
1	11319587	rs4845988	A	G	1044.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-2.221e+02;SOR=2.694;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1073,81,0
1	11561164	rs41274528	G	A	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.512;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.749;SB=-3.290e+02;SOR=1.220;VQSLOD=7.52;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,26:48:99:694,0,662
1	11561593	rs2817580	G	A	1536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.263;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=4.742;HaplotypeScore=1.9053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.426;SB=-9.690e+02;SOR=0.431;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,63:110:99:1565,0,1270
1	11561937	rs12144924	C	T	2790.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-11.532;DB;DP=213;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.9119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-0.395;SB=-1.351e+03;SOR=0.646;VQSLOD=6.07;culprit=DP	GT:AD:DP:GQ:PL	0/1:105,107:213:99:2819,0,2915
1	11562913	rs60362998	C	T	764.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=1.170;SB=-5.450e+02;SOR=0.518;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,33:63:99:793,0,782
1	11575375	rs2594318	T	A	711.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.514;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.819;SB=-2.420e+02;SOR=0.793;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,28:54:99:740,0,679
1	11575398	rs12135502	G	A	726.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.269;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.178;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.465;SB=-3.350e+02;SOR=0.449;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,29:68:99:755,0,960
1	11579470	rs2072994	G	A	1122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.477;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.908;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-0.227;SB=-5.300e+02;SOR=0.460;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,41:83:99:1151,0,1032
1	11584164	rs2076469	A	G	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.56;ReadPosRankSum=-1.606;SB=-9.700e+01;SOR=0.665;VQSLOD=9.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:166,0,379
1	11593793	.	T	TGCACACACGCAC	9002.73	PASS	AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.32;MQ0=0;QD=27.83;SB=-2.617e+03;SOR=1.926;VQSLOD=4.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:65:99:9040,190,0
1	11594400	rs2235663	T	C	375.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.336;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-0.649;SB=-1.370e+02;SOR=0.418;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:404,0,329
1	11596455	rs2594310	C	T	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.019;HaplotypeScore=1.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.60;ReadPosRankSum=1.328;SB=-1.764e+00;SOR=1.480;VQSLOD=5.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,5:36:99:122,0,803
1	11596762	rs2235666	C	T	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.056;SB=-1.010e+02;SOR=0.446;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:16:99:209,0,204
1	11708736	rs1055547	T	C	471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=-0.083;SB=-1.850e+02;SOR=0.636;VQSLOD=10.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:500,0,273
1	11709052	rs4397658	C	G	278.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.784;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=-1.426;SB=-1.235e+02;SOR=0.693;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,10:11:24:307,24,0
1	11714368	rs2272983	T	G	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.981;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.874;SB=-9.700e+01;SOR=0.693;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:184,0,207
1	11716066	rs145432128	T	C	1255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=56.44;MQ0=0;MQRankSum=-4.823;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=0.180;SB=-6.800e+02;SOR=0.737;VQSLOD=1.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,43:85:99:1284,0,1169
1	11716067	rs150648343	G	A	1229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.663;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=56.48;MQ0=0;MQRankSum=-4.761;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.009;SB=-6.480e+02;SOR=0.780;VQSLOD=0.960;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1258,0,1185
1	11731927	rs3215521	AG	A	839.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;DB;DP=52;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.79;RPA=9,8;RU=G;ReadPosRankSum=-0.188;SB=-1.180e+02;SOR=1.259;STR;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,30:52:99:877,0,568
1	11735377	rs2272982	G	C	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=0.008;SB=-4.176e+01;SOR=0.693;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:90:275,0,90
1	11737051	rs2294638	G	C	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.583;HaplotypeScore=4.2604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.96;ReadPosRankSum=0.041;SB=-1.460e+02;SOR=0.223;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,10:33:99:258,0,626
1	11740329	rs151210857	AGGCGTGAGCCAC	A	1816.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.793;SB=-7.170e+02;SOR=0.551;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,13:35:99:1854,0,2940
1	11740358	rs7417320	A	G	612.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.459;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-0.406;SB=-3.130e+02;SOR=0.892;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,26:44:99:641,0,441
1	11766424	rs11121804	C	T	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.35;ReadPosRankSum=-0.230;SB=-1.560e+02;SOR=0.426;VQSLOD=9.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,11:22:99:212,0,364
1	11771988	rs17037327	A	G	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.589;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.019;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=-1.057;SB=-3.310e+02;SOR=0.898;VQSLOD=7.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,23:58:99:529,0,879
1	11772303	rs1883574	A	G	1803.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=-6.620e+02;SOR=1.609;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1832,138,0
1	11772340	rs2336034	G	A	988.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.668;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.400;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-0.918;SB=-5.600e+02;SOR=0.373;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1017,0,744
1	11772526	rs1883573	A	G	562.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.673;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-1.052;SB=-2.860e+02;SOR=0.458;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,23:41:99:591,0,504
1	11779499	rs4846028	T	C	463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-2.001e+02;SOR=1.329;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:492,36,0
1	11779762	rs12117076	C	T	471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=0.515;SB=-2.770e+02;SOR=0.603;VQSLOD=8.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,22:53:99:500,0,875
1	11782506	rs34219540	T	C	743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.198;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-1.803;SB=-3.630e+02;SOR=1.002;VQSLOD=7.60;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:28,28:56:99:772,0,798
1	11782781	rs7533583	G	C	845.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.059;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.229;SB=-5.810e+02;SOR=0.648;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,38:77:99:874,0,967
1	11782814	rs7414943	G	A	910.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.112;SB=-4.980e+02;SOR=0.559;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,38:77:99:939,0,874
1	11782886	rs6540990	C	T	726.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.538;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=1.029;SB=-1.523e+02;SOR=2.179;VQSLOD=7.76;culprit=QD	GT:AD:DP:GQ:PL	1/1:1,31:32:26:755,26,0
1	11807426	rs12752700	C	T	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=-2.283;SB=-1.590e+02;SOR=0.693;VQSLOD=8.90;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,13:31:99:304,0,505
1	11827180	rs6540995	A	G	1248.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8901;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-6.300e+02;SOR=0.984;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:93:1277,93,0
1	11827304	rs6540996	A	G	1417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-7.390e+02;SOR=0.929;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1446,108,0
1	11832289	rs61773952	C	A	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.257;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=5.087;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=1.123;SB=-8.200e+01;SOR=1.728;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,24:54:99:690,0,799
1	11832368	rs112234774	G	C	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-1.113;SB=0.00;SOR=0.693;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:164,0,175
1	11836441	rs6699669	T	C	410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-2.221e+02;SOR=0.976;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:439,33,0
1	11836450	rs12132479	A	G	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.164;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-1.436;SB=-6.200e+01;SOR=1.806;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:231,0,176
1	11838646	rs12134663	A	C	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.733;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.832;SB=-2.004e+01;SOR=1.981;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:323,0,266
1	11839033	rs55668272	G	T	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.485;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;ReadPosRankSum=0.667;SB=-1.600e+02;SOR=0.439;VQSLOD=7.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,11:27:99:237,0,474
1	11839850	rs140897322	CT	C	239.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;RPA=3,2;RU=T;ReadPosRankSum=-1.351;SB=-1.050e+02;SOR=0.693;STR;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:277,0,258
1	11844214	rs12135232	A	T	667.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-1.939;SB=-4.180e+02;SOR=0.888;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,30:48:99:696,0,438
1	11847740	rs35562212	CCT	C	489.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;DB;DP=22;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.26;ReadPosRankSum=1.775;SB=-2.420e+02;SOR=0.740;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:527,0,538
1	11848139	rs11559040	G	A	1172.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-6.640e+02;SOR=0.749;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1201,90,0
1	11848879	rs2077360	A	G	737.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-2.221e+02;SOR=1.721;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:766,57,0
1	11849447	rs868014	A	G	1573.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-7.600e+02;SOR=0.952;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1602,120,0
1	11851003	rs3818762	G	C	694.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=0.053;SB=-3.777e+01;SOR=0.446;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,21:34:99:723,0,425
1	11851118	rs7518348	A	G	1076.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-8.197e+01;SOR=4.548;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1105,90,0
1	11852300	rs1476413	C	T	1019.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=1.933;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.179;SB=-5.220e+02;SOR=0.431;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,42:84:99:1048,0,1175
1	11854457	rs4846051	G	A	2229.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-1.031e+03;SOR=1.263;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2258,166,0
1	11854476	rs1801131	T	G	2555.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-1.108e+03;SOR=1.371;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2584,187,0
1	11854671	rs12121543	C	A	808.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.619;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.146;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-0.176;SB=-4.250e+02;SOR=0.399;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,30:62:99:837,0,1022
1	11860458	rs2066471	C	T	520.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.421;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=0.058;SB=-3.130e+02;SOR=0.610;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,23:50:99:549,0,768
1	11860465	rs13306567	C	G	796.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=-0.332;SB=-2.960e+02;SOR=0.861;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,27:49:99:825,0,553
1	11867044	rs3737964	T	C	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.508;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=1.012;SB=-5.150e-01;SOR=2.030;VQSLOD=6.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,8:24:99:254,0,516
1	11875709	rs111650969	C	G	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-0.993;SB=0.00;SOR=0.593;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:240,0,312
1	11879363	rs139473956	TG	T	295.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.40;RPA=3,2;RU=G;ReadPosRankSum=-1.089;SB=0.00;SOR=0.804;STR;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:333,0,288
1	11879468	rs78366115	C	T	977.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.896;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.116;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.700;SB=-4.060e+02;SOR=0.420;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,38:61:99:1006,0,711
1	11879685	rs198393	C	T	1568.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-6.230e+02;SOR=1.562;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1597,117,0
1	11879699	rs2050265	A	G	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.298;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-0.873;SB=-2.860e+02;SOR=0.407;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,24:44:99:636,0,598
1	11883731	rs12567136	C	T	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.473;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=-0.787;SB=-6.800e+01;SOR=0.399;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,15:36:99:419,0,723
1	11884555	rs198400	A	G	2850.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-1.861e+03;SOR=0.756;VQSLOD=3.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2879,208,0
1	11884619	rs41275474	G	A	1320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=1.919;HaplotypeScore=3.4062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-0.112;SB=-6.750e+02;SOR=0.410;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,50:84:99:1349,0,904
1	11886124	.	C	CT	116.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.30;RPA=12,13;RU=T;ReadPosRankSum=0.723;SB=-1.779e+00;SOR=1.426;STR;VQSLOD=7.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,7:16:99:154,0,147
1	11887125	rs41275476	C	T	553.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-1.345;SB=-1.820e+02;SOR=0.602;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,19:49:99:582,0,801
1	11887373	rs372917466	T	TG	886.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;RPA=6,7;RU=G;SB=-4.450e+02;SOR=0.770;STR;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:28:75:924,75,0
1	11887382	rs56190030	A	G	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-1.212;SB=-8.100e+01;SOR=0.716;VQSLOD=7.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,7:25:99:185,0,482
1	11888384	rs198401	A	G	995.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-5.280e+02;SOR=1.044;VQSLOD=7.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1024,75,0
1	11889213	rs41275482	T	G	1410.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.653;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=13.603;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=1.117;SB=-7.750e+02;SOR=0.173;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,53:114:99:1439,0,1802
1	11889468	rs535107	A	G	2907.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-1.021e+03;SOR=1.809;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2936,217,0
1	11889568	rs76219075	G	C	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.392;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-1.899;SB=-1.430e+02;SOR=0.385;VQSLOD=7.43;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,15:31:99:495,0,493
1	11893830	rs74771026	T	A	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=0.321;SB=-7.300e+01;SOR=0.084;VQSLOD=7.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:99:159,0,277
1	11893869	rs76337233	C	T	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.027;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-0.501;SB=-6.300e+01;SOR=0.368;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:275,0,382
1	11894171	.	G	A	766.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;DP=51;Dels=0.00;ExcessHet=3.0103;FS=10.821;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.03;ReadPosRankSum=1.018;SB=-1.850e+02;SOR=2.170;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,26:51:99:795,0,760
1	11895966	rs41275496	G	C	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.136;SB=-3.100e+01;SOR=1.421;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:429,0,376
1	11896236	rs201347187	G	A	549.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.212;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.648;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-1.007;SB=-6.200e+01;SOR=1.051;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,19:44:99:578,0,752
1	11897271	rs198405	T	C	770.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-1.249;SB=-3.890e+02;SOR=0.616;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,27:60:99:799,0,1019
1	11897592	rs198406	A	G	2325.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-1.040e+03;SOR=1.394;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2354,172,0
1	11898849	rs198409	T	G	1189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.116;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.837;HaplotypeScore=4.2572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=0.308;SB=-6.680e+02;SOR=0.495;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1218,0,984
1	11899033	rs1023252	G	T	1165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.030;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.225;SB=-5.360e+02;SOR=0.757;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,47:100:99:1194,0,1433
1	11900035	rs198410	G	A	1051.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.50;SB=-8.097e+01;SOR=3.912;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1080,81,0
1	11900142	rs77785799	C	T	1155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.102;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=4.145;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-0.597;SB=-4.450e+02;SOR=1.162;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1184,0,1154
1	11900385	rs198411	C	T	405.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.342;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=-0.310;SB=-1.765e+00;SOR=2.179;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:434,0,307
1	11905981	rs5067	A	G	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.578;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.998;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=0.300;SB=-1.020e+02;SOR=0.234;VQSLOD=7.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,15:35:99:371,0,637
1	11905995	rs5066	C	A	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.339;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=6.529;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-0.380;SB=-1.680e+02;SOR=0.127;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:468,0,644
1	11906068	rs5065	A	G	774.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.411;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.969;SB=-5.230e+02;SOR=0.687;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,34:66:99:803,0,826
1	11917620	rs35207557	T	TA	1062.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=30.36;RPA=7,8;RU=A;SB=-4.820e+02;SOR=1.002;STR;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1100,105,0
1	11938866	rs2008113	A	G	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.816;SB=-9.000e+01;SOR=0.039;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:173,0,132
1	11940266	rs4846067	G	A	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.325;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=6.008;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=1.595;SB=-4.700e+01;SOR=0.636;VQSLOD=6.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:124,0,301
1	11982544	rs2639453	T	C	1806.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-5.060e+02;SOR=2.049;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1835,135,0
1	11982676	rs186176129	A	C	881.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.677;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.861;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-1.320;SB=-4.270e+02;SOR=0.872;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,33:80:99:910,0,1267
1	11995176	rs1208984	A	G	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.924;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=-1.004;SB=-1.300e+02;SOR=0.693;VQSLOD=9.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,8:20:99:207,0,293
1	12009955	rs7529452	C	T	946.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.926;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.597;SB=-6.060e+02;SOR=0.761;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,39:73:99:975,0,876
1	12024235	rs1130529	C	T	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.860;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=-1.419;SB=-3.470e+02;SOR=0.604;VQSLOD=7.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,24:54:99:564,0,791
1	12026090	rs6678553	A	G	150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.100;SB=0.00;SOR=0.693;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:179,0,127
1	12027204	rs2273293	C	T	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-0.552;SB=-1.765e+00;SOR=1.609;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:198,0,193
1	12030995	rs59235751	A	G	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-1.626;SB=0.00;SOR=0.859;VQSLOD=9.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,6:12:99:198,0,172
1	12033113	rs3737961	A	G	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.265;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.675;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-1.000;SB=-5.150e-01;SOR=1.828;VQSLOD=6.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,15:45:99:456,0,986
1	12033120	rs3820190	G	C	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.881;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=-0.763;SB=-1.765e+00;SOR=0.733;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,12:37:99:371,0,874
1	12056440	rs2236056	C	T	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.304;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=0.507;SB=0.00;SOR=1.292;VQSLOD=9.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,12:19:99:416,0,201
1	12062205	rs2236057	A	G	1226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.677;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.918;HaplotypeScore=4.5115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=1.112;SB=-3.660e+02;SOR=0.481;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,47:91:99:1255,0,1209
1	12064768	rs369656161	A	C	1042.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.861;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.270;SB=-4.400e+02;SOR=0.693;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,40:80:99:1071,0,1299
1	12067044	rs7550536	T	G	385.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.344;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-0.462;SB=-6.900e+01;SOR=0.430;VQSLOD=10.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:414,0,283
1	12071680	rs1042842	A	G	256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.457;SB=-6.200e+01;SOR=1.270;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:285,0,165
1	12082926	rs2295283	A	G	948.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.906;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=-0.806;SB=-5.060e+02;SOR=0.843;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,36:55:99:977,0,422
1	12082982	.	G	A	563.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.716;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.19;ReadPosRankSum=0.310;SB=-1.205e+02;SOR=0.132;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,20:31:99:592,0,341
1	12091210	rs946461	T	C	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=0.984;SB=-4.276e+01;SOR=0.275;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:278,0,218
1	12144662	rs11569821	T	A	751.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.101;HaplotypeScore=4.0705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=1.489;SB=-2.550e+02;SOR=0.965;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,25:53:99:780,0,567
1	12144667	rs11569822	C	T	721.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=1.527;SB=-2.930e+02;SOR=0.929;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,26:51:99:750,0,595
1	12144801	rs137907825	CTG	C	153.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;DB;DP=12;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.08;RPA=2,1;RU=TG;ReadPosRankSum=1.180;SB=-9.732e-01;SOR=3.611;STR;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,5:12:99:191,0,183
1	12175729	rs1763642	C	T	3051.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.711e+03;SOR=1.007;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3080,220,0
1	12198635	rs6419481	T	C	1858.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=-9.930e+02;SOR=1.034;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1887,135,0
1	12252333	.	C	CTG	352.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.76;RPA=15,16;RU=TG;ReadPosRankSum=-0.381;SB=-3.300e+01;SOR=1.179;STR;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,12:33:99:390,0,529
1	12316584	rs235246	A	G	1404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.050;SB=-6.540e+02;SOR=0.778;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:70,54:124:99:1433,0,1835
1	12321247	rs74819464	G	T	575.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.235;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.420;SB=-2.300e+02;SOR=1.445;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,24:49:99:604,0,633
1	12328002	rs140817403	T	A	638.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.006;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.025;SB=-1.370e+02;SOR=0.368;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,23:42:99:667,0,558
1	12342681	rs12565969	G	A	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;ReadPosRankSum=0.651;SB=-9.732e-01;SOR=1.721;VQSLOD=7.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:121,0,258
1	12379789	rs72866658	A	C	527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.007;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.576;SB=-1.060e+02;SOR=0.544;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,19:41:99:556,0,661
1	12381796	rs17037982	C	T	794.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.042;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=1.248;SB=-3.350e+02;SOR=0.584;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,30:50:99:823,0,615
1	12382751	rs35102018	C	T	1865.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.797;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-0.617;SB=-9.480e+02;SOR=0.686;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,73:130:99:1894,0,1372
1	12398413	rs76314308	T	G	945.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.571;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=1.722;SB=-3.180e+02;SOR=0.666;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,35:57:99:974,0,528
1	12401868	rs28551666	A	C	2535.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-9.810e+02;SOR=1.609;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2564,190,0
1	12403186	rs150984164	C	G	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=0.695;SB=0.00;SOR=0.976;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:274,0,200
1	12414414	rs75977924	C	G	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=-0.980;SB=0.00;SOR=0.260;VQSLOD=9.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:154,0,361
1	12416169	rs117334668	G	T	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.686;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.19;ReadPosRankSum=-2.084;SB=-6.500e+01;SOR=0.746;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,13:35:99:350,0,642
1	12418700	rs10864552	T	C	852.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-4.176e+01;SOR=4.977;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:881,72,0
1	12438713	rs72868236	A	C	703.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.897;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.208;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.107;SB=-2.790e+02;SOR=0.473;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:732,0,640
1	12443360	rs74374454	C	T	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.702;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=2.007;SB=0.00;SOR=0.425;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:227,0,361
1	12516288	rs140358707	G	C	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.974;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.764;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.84;ReadPosRankSum=0.270;SB=-9.732e-01;SOR=1.508;VQSLOD=7.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,9:26:99:258,0,565
1	12516295	rs143531591	C	A	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.023;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.917;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-0.597;SB=-9.732e-01;SOR=1.721;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:280,0,499
1	12567232	rs7554257	A	G	777.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.877;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.413;SB=-3.990e+02;SOR=0.956;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,28:61:99:806,0,924
1	12569090	rs78839159	T	C	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.836;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.998;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=1.748;SB=-6.200e+01;SOR=1.650;VQSLOD=6.70;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,17:33:99:519,0,415
1	12628637	rs4240900	G	A	629.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=0.00;SOR=5.784;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:658,51,0
1	12638964	rs2275875	T	C	3931.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-2.408e+03;SOR=0.941;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3960,295,0
1	12639018	rs2275874	C	T	3250.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-1.260e+03;SOR=1.683;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3279,241,0
1	12639168	rs3128461	A	G	2071.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.53;SB=-9.810e+02;SOR=1.071;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2100,154,0
1	12677524	rs376688959	AG	A	51.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=-1.162;QD=3.23;ReadPosRankSum=1.413;SB=0.00;SOR=0.340;VQSLOD=1.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:17:89:89,0,237
1	12776134	rs3010874	C	A	516.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.45;SB=-4.076e+01;SOR=4.047;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:16:42:545,42,0
1	12776218	rs3000860	A	C	1522.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-4.680e+02;SOR=2.078;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1551,111,0
1	12776344	rs3000859	A	T	2525.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-1.329e+03;SOR=1.068;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2554,187,0
1	12779560	rs3010876	T	C	3074.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=-2.103e+03;SOR=0.730;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3103,223,0
1	12779618	rs3010877	T	C	2475.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-1.003e+03;SOR=1.759;VQSLOD=4.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:82:99:2504,184,0
1	12785093	rs4361998	T	G	1694.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-8.720e+02;SOR=1.047;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1723,126,0
1	12785494	rs7513079	G	T	1045.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.469;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.085;HaplotypeScore=2.9154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.707;SB=-4.190e+02;SOR=1.303;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,37:81:99:1074,0,1156
1	12785749	rs11121969	C	T	1548.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.235;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.698;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=1.271;SB=-7.700e+02;SOR=0.818;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,56:115:99:1577,0,1506
1	12785989	.	C	T	806.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.030;DP=51;Dels=0.00;ExcessHet=3.0103;FS=16.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.82;ReadPosRankSum=0.175;SB=-3.771e+02;SOR=0.037;VQSLOD=3.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,32:51:99:835,0,547
1	12786070	rs3000930	A	G	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=-0.538;SB=0.00;SOR=2.670;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,10:12:46:355,0,46
1	12820870	rs1132185	T	C	2352.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-5.280e+02;SOR=2.833;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2381,175,0
1	12835868	rs1812242	T	C	2597.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-1.612e+03;SOR=0.839;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2626,196,0
1	12837634	rs848578	T	A	2396.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-1.144e+03;SOR=1.236;VQSLOD=4.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2425,187,0
1	12837840	rs848577	G	C	1872.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.21;SB=-5.600e+02;SOR=2.381;VQSLOD=7.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1901,147,0
1	12853403	rs1737157	A	C	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.680;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.05;MQ0=0;MQRankSum=-1.888;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-0.106;SB=-1.000e+02;SOR=0.446;VQSLOD=2.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,11:21:99:313,0,296
1	12853975	rs72472661	G	T	66.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3361;MLEAC=1;MLEAF=0.500;MQ=43.92;MQ0=0;MQRankSum=-2.776;QD=2.30;ReadPosRankSum=-1.050;SB=-5.150e-01;SOR=1.022;VQSLOD=0.881;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,6:29:95:95,0,735
1	12853998	rs201383196	C	G	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.376;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.38;MQ0=0;MQRankSum=-1.611;QD=6.15;ReadPosRankSum=-0.730;SB=-2.901e+01;SOR=0.465;VQSLOD=1.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,10:38:99:262,0,854
1	12854530	rs1063776	C	G	2276.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-1.005e+03;SOR=1.257;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2305,172,0
1	12854713	rs11121979	G	T	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=0.605;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-0.349;SB=-1.765e+00;SOR=1.609;VQSLOD=3.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:167,0,207
1	12854716	rs1737150	A	G	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-0.605;QD=15.71;ReadPosRankSum=0.618;SB=-3.876e+01;SOR=0.223;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:201,0,166
1	12855835	rs1063795	C	G	2123.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=1;POSITIVE_TRAIN_SITE;QD=30.78;SB=-9.960e+02;SOR=1.179;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2152,163,0
1	12855845	rs1063797	G	C	2136.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=2;POSITIVE_TRAIN_SITE;QD=30.53;SB=-9.790e+02;SOR=1.263;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2165,163,0
1	12887549	rs2994114	T	C	5036.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4822;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-3.133e+03;SOR=0.808;VQSLOD=5.83;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5065,367,0
1	12887852	rs35409208	GT	G	117.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.95;MQ0=0;MQRankSum=0.887;POSITIVE_TRAIN_SITE;QD=14.71;RPA=11,10;RU=T;ReadPosRankSum=-0.489;SB=0.00;SOR=2.833;STR;VQSLOD=1.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:12:6:154,0,6
1	12888601	.	G	GC	807.73	PASS	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=30.49;RPA=3,4;RU=C;SB=-4.030e+02;SOR=0.784;STR;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:845,63,0
1	12888629	rs76312011	A	G	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.826;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=52.84;MQ0=0;MQRankSum=-3.313;QD=5.85;ReadPosRankSum=-0.560;SB=-1.280e+02;SOR=1.132;VQSLOD=0.859;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,13:36:99:239,0,567
1	12888840	rs2982099	C	G	820.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-6.597e+01;SOR=3.912;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:849,63,0
1	12888867	rs61777008	A	G	66.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.50;MQ0=0;MQRankSum=-0.519;QD=4.17;ReadPosRankSum=1.275;SB=0.00;SOR=0.138;VQSLOD=1.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:95:95,0,435
1	12888878	rs61777009	C	A	69.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9987;MLEAC=1;MLEAF=0.500;MQ=41.07;MQ0=0;MQRankSum=-0.284;QD=4.65;ReadPosRankSum=0.981;SB=0.00;SOR=0.160;VQSLOD=1.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:98:98,0,391
1	12898378	rs57957396	C	G	408.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.127;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.054;HaplotypeScore=3.6983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-1.014;SB=-5.700e+01;SOR=1.550;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:437,0,265
1	12898445	rs11121996	C	A	1496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-5.680e+02;SOR=1.755;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1525,114,0
1	12898472	rs4301642	C	T	1988.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-6.640e+02;SOR=2.019;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2017,144,0
1	12898673	rs4453052	G	T	2633.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-1.186e+03;SOR=1.085;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:83:99:2662,208,0
1	12907316	rs112607517	T	C	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.34;MQ0=2;MQRankSum=-3.751;QD=6.51;ReadPosRankSum=0.410;SB=-5.400e+01;SOR=0.904;VQSLOD=0.867;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,11:25:99:191,0,417
1	12908333	rs61775391	T	C	866.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.902;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=53.49;MQ0=0;MQRankSum=-2.696;QD=18.06;ReadPosRankSum=0.775;SB=0.00;SOR=1.378;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,31:48:99:895,0,529
1	12908349	rs148082633	A	AT	1002.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.628;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=0;MQRankSum=-1.893;QD=27.85;ReadPosRankSum=0.420;SB=0.00;SOR=1.547;VQSLOD=1.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,24:36:99:1040,0,410
1	12908375	rs61775392	T	C	477.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.516;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.8294;MLEAC=1;MLEAF=0.500;MQ=56.73;MQ0=0;MQRankSum=-1.574;QD=20.77;ReadPosRankSum=0.301;SB=0.00;SOR=1.708;VQSLOD=2.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,16:23:99:506,0,217
1	12908384	rs144125074	G	GA	276.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.58;MQ0=0;MQRankSum=-1.347;QD=16.28;RPA=8,9;RU=A;ReadPosRankSum=-0.369;SB=0.00;SOR=1.739;STR;VQSLOD=1.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,12:21:85:314,0,85
1	12919350	rs61775399	A	G	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9963;MLEAC=1;MLEAF=0.500;MQ=57.89;MQ0=0;MQRankSum=1.807;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=-0.786;SB=-3.501e+01;SOR=0.412;VQSLOD=3.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:170,0,231
1	12919456	rs377648386	A	ACATG	622.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.01;MQ0=0;MQRankSum=-2.958;QD=10.86;ReadPosRankSum=1.295;SB=-1.780e+02;SOR=0.769;VQSLOD=1.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,11:43:99:660,0,2021
1	12919459	rs139219724	G	T	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.771;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9955;MLEAC=1;MLEAF=0.500;MQ=55.13;MQ0=0;MQRankSum=-3.131;QD=5.60;ReadPosRankSum=0.500;SB=-1.200e+02;SOR=0.495;VQSLOD=1.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,13:46:99:286,0,834
1	12942862	rs61778465	G	C	281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.012;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.67;MQ0=0;MQRankSum=-1.683;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=0.688;SB=0.00;SOR=1.112;VQSLOD=3.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:310,0,177
1	12979729	rs146836223	G	A	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.300;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=41.70;MQ0=0;MQRankSum=-0.754;POSITIVE_TRAIN_SITE;QD=4.68;ReadPosRankSum=-0.410;SB=-2.030e+02;SOR=0.569;VQSLOD=1.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:55,18:73:99:370,0,1422
1	12987327	rs142575927	G	A	120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.64;MQ0=0;MQRankSum=-1.829;QD=12.08;ReadPosRankSum=-0.497;SB=0.00;SOR=0.693;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:149,0,166
1	12987349	rs201380147	G	A	36.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.40;MQ0=0;MQRankSum=-1.088;QD=2.45;ReadPosRankSum=-0.144;SB=0.00;SOR=0.090;VQSLOD=2.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:15:65:65,0,394
1	12987350	rs199692075	A	T	37.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.030;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.40;MQ0=0;MQRankSum=-1.088;QD=2.52;ReadPosRankSum=-0.072;SB=0.00;SOR=0.090;VQSLOD=2.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:15:66:66,0,389
1	13052589	rs71225489	A	T	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.61;MQ0=0;MQRankSum=-2.126;QD=10.94;ReadPosRankSum=-0.145;SB=0.00;SOR=0.346;VQSLOD=1.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,8:21:99:258,0,431
1	13141835	rs79437155	C	T	606.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=28.89;SB=-1.543e+02;SOR=2.636;VQSLOD=4.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:635,48,0
1	13173016	rs1852947	A	G	458.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-1.851e+02;SOR=1.473;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:487,36,0
1	13183439	rs28713604	T	C	8067.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5245;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;NEGATIVE_TRAIN_SITE;QD=32.27;SB=-4.263e+03;SOR=0.794;VQSLOD=0.379;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,250:250:99:8096,611,0
1	13839382	rs2990682	C	G	67.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=1.4725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.16;ReadPosRankSum=-1.393;SB=-5.300e+01;SOR=0.078;VQSLOD=6.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:96:96,0,210
1	13910417	rs355025	C	T	2587.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-7.420e+02;SOR=2.242;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2616,193,0
1	13910741	rs150088145	CGGA	C	1389.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;RPA=3,2;RU=GGA;SB=0.00;SOR=6.593;STR;VQSLOD=3.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:33:78:1427,78,0
1	13936822	rs404658	G	T	1094.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;SB=-2.650e+02;SOR=2.448;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:87:1123,87,0
1	13937089	rs2487643	G	T	1524.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-7.070e+02;SOR=1.298;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1553,117,0
1	13937281	rs4391657	T	C	357.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-4.176e+01;SOR=3.442;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:386,30,0
1	13940864	rs2486188	C	G	3821.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-2.290e+03;SOR=0.899;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3850,277,0
1	14042309	rs7411176	G	A	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.928;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=-0.915;SB=-7.597e+01;SOR=0.914;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,12:14:45:373,0,45
1	14057258	rs2277	G	A	292.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.983;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=8.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-0.834;SB=-1.483e+02;SOR=0.048;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:321,0,274
1	14059395	rs33969518	T	C	448.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.297;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.192;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=1.076;SB=-1.240e+02;SOR=1.127;VQSLOD=7.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,20:55:99:477,0,854
1	14096821	rs1210110	T	C	626.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.045;SB=-2.350e+02;SOR=0.711;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,25:53:99:655,0,734
1	14099763	rs10803426	C	T	1862.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.383;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=5.622;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.062;SB=-3.560e+02;SOR=1.302;VQSLOD=6.85;culprit=DP	GT:AD:DP:GQ:PL	0/1:58,64:122:99:1891,0,1473
1	14105139	rs2076324	T	A	2222.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-5.680e+02;SOR=2.165;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2251,169,0
1	14105298	rs1203678	G	A	1130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=5.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.095;SB=-4.150e+02;SOR=1.464;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1159,0,1112
1	14106394	rs148293494	A	ACTC	1513.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DB;DP=88;ExcessHet=3.0103;FS=3.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.24;RPA=1,2;RU=CTC;ReadPosRankSum=0.616;SB=-4.080e+02;SOR=1.142;STR;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,30:88:99:1551,0,2860
1	14107360	rs41269807	T	A	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=-0.618;SB=-3.000e+01;SOR=0.551;VQSLOD=9.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:86:86,0,250
1	14109114	rs1203651	A	G	556.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=5.470;HaplotypeScore=2.9302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.493;SB=-2.930e+02;SOR=1.185;VQSLOD=7.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,24:57:99:585,0,903
1	14143003	rs1046331	A	G	810.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.216;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.032;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-0.579;SB=-4.860e+02;SOR=0.546;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,31:68:99:839,0,942
1	14149505	rs2697970	C	A	258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=0.980;SB=0.00;SOR=1.802;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:89:287,0,89
1	14149601	rs2697969	C	T	565.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.635;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-1.326;SB=-2.600e+02;SOR=0.349;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,23:51:99:594,0,776
1	14149622	rs2697968	T	C	548.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.396;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.273;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-1.090;SB=-3.260e+02;SOR=0.405;VQSLOD=7.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,26:60:99:577,0,812
1	14149844	rs1046333	T	A	230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-0.667;SB=-3.400e+01;SOR=0.495;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:259,0,297
1	15382667	rs2076570	T	C	1053.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.846;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.882;SB=-6.160e+02;SOR=0.702;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1082,0,1037
1	15382808	rs2076569	G	A	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.459;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-0.264;SB=-1.765e+00;SOR=1.061;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,10:26:99:304,0,542
1	15389913	rs150455986	T	A	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.113;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=1.383;SB=0.00;SOR=0.804;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:292,0,263
1	15389999	rs138293108	C	T	715.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-1.014;SB=-3.510e+02;SOR=0.580;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,28:61:99:744,0,804
1	15390145	rs2076565	A	G	634.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.914;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.069;HaplotypeScore=4.2195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=0.214;SB=-2.600e+02;SOR=1.092;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,26:59:99:663,0,886
1	15392094	rs12071695	C	G	1049.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.725;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-0.560;SB=-4.230e+02;SOR=0.536;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,43:80:99:1078,0,1032
1	15428358	rs477953	T	C	870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=-1.105e+02;SOR=3.528;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:899,66,0
1	15428363	rs12129679	G	A	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.031;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=0.969;SB=-1.765e+00;SOR=0.392;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:254,0,457
1	15438990	rs10803354	G	A	1066.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.978;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=5.219;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=0.050;SB=-4.220e+02;SOR=1.544;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,43:69:99:1095,0,645
1	15439227	rs12046842	C	A	87.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.75;ReadPosRankSum=1.209;SB=0.00;SOR=0.223;VQSLOD=8.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:116,0,332
1	15497727	rs6429722	T	C	4010.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-1.962e+03;SOR=1.266;VQSLOD=3.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4039,292,0
1	15497832	rs41307794	T	C	1272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.501;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=11.405;HaplotypeScore=7.9005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=1.456;SB=-2.950e+02;SOR=1.680;VQSLOD=3.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:75,45:120:99:1301,0,1928
1	15497844	rs10429935	T	A	3377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8133;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-1.236e+03;SOR=1.747;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3406,253,0
1	15541537	rs3753314	C	T	1091.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.12;SB=-1.881e+02;SOR=3.126;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1120,84,0
1	15541640	rs41310380	G	A	881.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-0.193;SB=-5.490e+02;SOR=0.634;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,37:73:99:910,0,997
1	15545581	rs12121147	G	A	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-0.000;SB=-4.076e+01;SOR=0.148;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:227,0,321
1	15546077	rs3753313	G	A	3851.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6274;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-1.437e+03;SOR=1.628;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3880,298,0
1	15578195	rs1622686	T	C	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.941;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.711;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-0.180;SB=-5.150e-01;SOR=2.303;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,11:29:99:363,0,527
1	15616139	rs486557	G	A	1379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.499;HaplotypeScore=5.8786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.862;SB=-8.660e+02;SOR=0.714;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,57:114:99:1408,0,1449
1	15616183	rs487338	T	C	1262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.806;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.470;SB=-5.990e+02;SOR=0.865;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,50:95:99:1291,0,1257
1	15650784	rs3765354	T	G	333.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-4.276e+01;SOR=3.442;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:362,30,0
1	15650791	rs3765355	G	C	472.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-7.597e+01;SOR=2.985;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:501,36,0
1	15651062	rs3765356	A	G	799.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-2.051e+02;SOR=2.215;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:828,60,0
1	15653503	rs7532559	A	G	1451.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-5.330e+02;SOR=2.078;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1480,114,0
1	15653563	rs3765357	C	T	2462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9682;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-1.180e+03;SOR=1.252;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:79:99:2491,187,0
1	15653872	rs10127456	G	A	753.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=0.00;SOR=5.994;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:782,57,0
1	15668276	rs763821	G	A	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.781;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-0.904;SB=-3.280e+02;SOR=0.252;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,23:40:99:552,0,499
1	15708557	rs35816204	G	A	772.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.045;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.013;SB=-4.090e+02;SOR=0.976;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,30:64:99:801,0,849
1	15714831	rs6669577	C	T	601.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=7.106;HaplotypeScore=1.8653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.10;ReadPosRankSum=-0.381;SB=-3.300e+01;SOR=4.407;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,18:20:14:630,0,14
1	15723843	rs2294490	G	A	882.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.146;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-1.681;SB=-2.940e+02;SOR=0.560;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,34:68:99:911,0,1040
1	15724033	rs2253372	A	G	850.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.301;HaplotypeScore=3.8255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-0.316;SB=-2.160e+02;SOR=0.400;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,31:53:99:879,0,599
1	15754484	rs2473356	T	C	1788.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-1.154e+03;SOR=0.728;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1817,129,0
1	15769876	.	G	GC	2153.73	PASS	AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=28.99;RPA=2,3;RU=C;SB=-8.040e+02;SOR=1.358;STR;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2191,157,0
1	15772057	rs10927786	G	T	701.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.337;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=-1.084;SB=-8.500e+01;SOR=0.479;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,25:48:99:730,0,710
1	15772933	rs555015	A	G	329.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.770;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-0.270;SB=-8.297e+01;SOR=0.154;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:358,0,218
1	15783081	.	T	C	680.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.243;DP=61;Dels=0.00;ExcessHet=3.0103;FS=5.936;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-0.257;SB=-1.410e+02;SOR=1.643;VQSLOD=5.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,25:61:99:709,0,915
1	15783096	rs5772641	GA	G	1577.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.86;RPA=10,9;RU=A;SB=-5.580e+02;SOR=1.609;STR;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1615,183,0
1	15783117	.	C	CA	3276.73	PASS	AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;RPA=1,2;RU=A;SB=-1.256e+03;SOR=1.371;STR;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:75:99:3314,223,0
1	15783381	rs2303196	C	T	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7241;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=0.728;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=0.449;SB=-1.020e+02;SOR=0.446;VQSLOD=3.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:278,0,226
1	15788269	rs3737696	A	C	1262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.806;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=1.595;HaplotypeScore=1.9575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=1.058;SB=-6.990e+02;SOR=0.846;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,46:103:99:1291,0,1380
1	15788491	rs3737697	C	T	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.596;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.96;ReadPosRankSum=-0.576;SB=-1.190e+02;SOR=0.255;VQSLOD=7.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:28:99:251,0,573
1	15788630	rs7512589	G	A	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.391;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.07;ReadPosRankSum=0.209;SB=-1.570e+02;SOR=0.556;VQSLOD=8.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,15:38:99:335,0,636
1	15788693	rs7536007	C	T	154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.468;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-0.605;SB=0.00;SOR=0.293;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:183,0,354
1	15789080	rs3815785	T	G	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.008;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-0.516;SB=0.00;SOR=0.593;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:272,0,299
1	15789176	rs3815786	C	T	1061.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.176;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=4.863;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-0.578;SB=-2.360e+02;SOR=0.250;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,38:71:99:1090,0,1002
1	15789297	rs3815787	A	C	5044.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-3.056e+03;SOR=0.919;VQSLOD=5.04;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5073,376,0
1	15789446	rs3815788	C	G	1284.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-7.497e+01;SOR=4.804;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:96:1313,96,0
1	15789450	rs3815789	T	A	1215.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-8.097e+01;SOR=4.804;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:96:1244,96,0
1	15812432	rs6429745	A	G	925.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.05;SB=-4.000e+02;SOR=1.542;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:72:954,72,0
1	15813751	rs2011159	C	T	914.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-3.750e+02;SOR=1.460;VQSLOD=7.03;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,29:29:69:943,69,0
1	15873410	.	CT	C	165.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;DP=42;ExcessHet=3.0103;FS=6.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.87;RPA=19,18;RU=T;ReadPosRankSum=-0.903;SB=-8.001e+01;SOR=0.073;STR;VQSLOD=5.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,13:42:99:200,0,302
1	16053493	rs41393951	G	A	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=2.5677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.112;SB=-9.732e-01;SOR=2.546;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:213,0,257
1	16055039	rs12724755	C	T	370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=1.478;SB=-1.070e+02;SOR=0.693;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:399,0,116
1	16055732	rs6429772	C	T	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-0.851;SB=-1.090e+02;SOR=0.193;VQSLOD=7.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,10:24:99:244,0,456
1	16056364	rs3817269	G	A	1211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.024;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.807;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.377;SB=-6.350e+02;SOR=0.850;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,48:88:99:1240,0,1028
1	16058698	rs77293491	CA	C	409.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.994;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=1.044;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=-0.493;SB=-1.140e+02;SOR=0.804;VQSLOD=3.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,12:24:99:447,0,482
1	16064411	rs937592	T	C	598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.159;SB=-2.380e+02;SOR=0.756;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,23:45:99:627,0,609
1	16069644	rs11584945	C	T	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.664;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=7.181;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.450;SB=-2.190e+02;SOR=0.072;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,18:29:99:470,0,302
1	16096934	rs10927851	C	T	395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.945;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-1.198;SB=-1.030e+02;SOR=0.818;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:424,0,302
1	16097237	rs10803398	G	A	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.156;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=1.230;VQSLOD=10.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:205,0,282
1	16101217	rs41268337	C	T	384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.274;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=-1.301;SB=-2.050e+02;SOR=0.169;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,16:28:99:413,0,414
1	16110815	rs11576404	G	A	690.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=0.00;SOR=5.892;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:719,54,0
1	16155107	rs10927860	G	C	416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.78;SB=-2.820e+02;SOR=0.818;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:445,33,0
1	16265060	.	CT	C	95.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DP=16;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.98;RPA=19,18;RU=T;ReadPosRankSum=-0.380;SB=-1.514e+01;SOR=2.303;STR;VQSLOD=4.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,10:16:99:133,0,101
1	16314900	rs848298	T	C	397.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.52;SB=-2.890e+02;SOR=0.818;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:426,30,0
1	16317706	rs848306	A	G	269.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.53;SB=-1.851e+02;SOR=0.859;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:298,21,0
1	16342237	rs1739840	A	G	1154.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-5.860e+02;SOR=1.096;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1183,87,0
1	16343835	rs1763596	C	T	546.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=0.00;SOR=5.784;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:575,45,0
1	16344360	rs732286	A	G	988.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.47;SB=-7.120e+02;SOR=0.693;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:72:1017,72,0
1	16344402	rs945416	G	A	989.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.13;SB=-4.290e+02;SOR=1.255;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:75:1018,75,0
1	16344494	rs1572381	G	A	741.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-4.090e+02;SOR=0.784;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:770,57,0
1	16344625	rs945417	C	G	426.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-8.297e+01;SOR=2.833;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:455,33,0
1	16344664	rs872222	G	A	368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-8.197e+01;SOR=2.670;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:397,30,0
1	16345619	rs945422	T	C	390.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;SB=-1.453e+02;SOR=1.765;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:419,30,0
1	16346009	.	G	GC	1134.73	PASS	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=28.61;RPA=5,6;RU=C;SB=-2.331e+02;SOR=2.694;STR;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:32:93:1172,93,0
1	16351275	rs10927887	A	G	352.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-8.097e+01;SOR=2.494;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:381,30,0
1	16352937	rs1010069	G	A	380.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-1.971e+02;SOR=1.022;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:409,30,0
1	16353400	rs9442216	T	C	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-4.176e+01;SOR=3.442;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:399,30,0
1	16356501	rs1805152	G	A	657.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-3.190e+02;SOR=1.230;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:686,51,0
1	16356583	rs3737218	C	T	291.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.18;SB=-7.897e+01;SOR=2.303;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:320,24,0
1	16358148	rs2015509	T	C	1439.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-6.290e+02;SOR=1.378;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1468,108,0
1	16358685	rs6669935	C	G	513.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-2.471e+02;SOR=1.371;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:542,39,0
1	16358932	rs10803407	T	C	1230.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-5.550e+02;SOR=1.445;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1259,93,0
1	16359051	rs10927892	C	A	1157.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-3.930e+02;SOR=1.739;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1186,87,0
1	16359052	rs10927893	A	G	1168.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-4.480e+02;SOR=1.739;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1197,87,0
1	16359106	rs10803408	C	T	613.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-1.483e+02;SOR=2.531;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:642,48,0
1	16359123	rs9442217	A	G	623.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=-6.597e+01;SOR=3.500;VQSLOD=5.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:652,48,0
1	16359827	rs3738633	A	G	490.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-4.176e+01;SOR=4.047;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:519,39,0
1	16361916	rs11811753	G	A	251.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=2;QD=19.37;SB=-1.543e+02;SOR=0.859;VQSLOD=1.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:21:280,21,0
1	16362561	rs55731534	C	G	1389.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-1.493e+02;SOR=2.786;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1418,108,0
1	16362621	rs2009044	G	A	2575.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9568;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.31;SB=-9.020e+02;SOR=1.770;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2604,193,0
1	16362661	rs3978493	A	C	3599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.80;SB=-1.699e+03;SOR=1.262;VQSLOD=4.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3628,265,0
1	16371067	rs2015352	G	T	723.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.95;SB=-4.240e+02;SOR=0.941;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:752,54,0
1	16371932	rs6604909	A	C	593.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.653e+02;SOR=2.303;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:622,45,0
1	16372003	rs6604910	G	C	865.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-5.320e+02;SOR=0.976;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:63:894,63,0
1	16373124	rs5257	A	G	609.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.72;SB=-2.401e+02;SOR=1.931;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:638,48,0
1	16373199	rs35820664	CCTT	C	1345.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=-6.620e+02;SOR=0.776;VQSLOD=5.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:24:69:1383,69,0
1	16373282	rs2095540	A	G	458.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.33;SB=-6.397e+01;SOR=2.833;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:487,36,0
1	16374533	rs2014562	G	C	605.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-3.590e+02;SOR=0.793;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:634,48,0
1	16374622	rs2863440	C	G	529.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-2.331e+02;SOR=1.371;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:42:558,42,0
1	16374656	rs2902490	A	G	400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-1.025e+02;SOR=1.609;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:429,33,0
1	16374780	TMP_ESP_1_16374780	GGGTGA	G	349.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;DB;DP=14;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.14;ReadPosRankSum=-0.142;SB=-1.500e+02;SOR=0.799;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:14:99:387,0,637
1	16374788	.	C	CA	164.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;DP=13;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-0.141;SB=-7.300e+01;SOR=0.799;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:202,0,340
1	16374994	rs1889788	C	T	1346.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-4.720e+02;SOR=1.775;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1375,99,0
1	16375063	rs1889789	C	G	1590.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-9.830e+02;SOR=0.808;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1619,117,0
1	16375064	rs1889790	A	C	1523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.75;SB=-8.800e+02;SOR=0.808;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1552,114,0
1	16375210	rs9633514	G	A	583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.98;SB=0.00;SOR=5.549;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:612,45,0
1	16375838	rs7545067	C	G	297.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-1.483e+02;SOR=1.085;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:326,24,0
1	16376191	rs7367494	C	T	287.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=2;POSITIVE_TRAIN_SITE;QD=23.98;SB=-7.197e+01;SOR=2.303;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,10:12:24:316,24,0
1	16376230	rs35469726	A	AT	552.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=25.49;SB=-9.197e+01;SOR=2.833;VQSLOD=4.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:590,39,0
1	16376232	rs59924562	A	T	420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=2;QD=28.05;SB=-8.097e+01;SOR=2.833;VQSLOD=4.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,13:15:33:449,33,0
1	16376238	rs34589727	TC	T	435.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;RPA=6,5;RU=C;SB=-7.497e+01;SOR=2.833;STR;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:473,39,0
1	16376278	rs7365182	G	A	746.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-2.431e+02;SOR=2.215;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:57:775,57,0
1	16376319	rs7368151	T	C	969.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-4.080e+02;SOR=1.402;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:998,72,0
1	16376458	rs7368166	T	C	710.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-2.301e+02;SOR=1.931;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:739,54,0
1	16379008	rs2050522	C	T	1994.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-4.640e+02;SOR=2.584;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2023,150,0
1	16380252	rs2275167	C	T	546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.579;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=0;MQRankSum=-4.815;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=1.089;SB=-9.900e+01;SOR=0.705;VQSLOD=1.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,19:43:99:575,0,722
1	16381718	rs1414498	T	C	411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.848;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=1.429;SB=-5.150e-01;SOR=2.973;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:440,0,445
1	16381722	rs12691552	C	T	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.979;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.354;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=1.645;SB=-5.150e-01;SOR=2.833;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:429,0,488
1	16381792	rs12047858	T	A	979.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-1.638;SB=-4.050e+02;SOR=1.238;VQSLOD=7.55;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:39,40:79:99:1008,0,945
1	16381816	rs12029508	C	T	1031.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.614;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.711;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.709;SB=-4.380e+02;SOR=0.965;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,41:94:99:1060,0,1268
1	16382086	rs2297727	C	T	265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.126;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.916;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.799;SB=-5.100e+01;SOR=1.751;VQSLOD=6.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,9:27:99:294,0,548
1	16382718	rs12048851	T	C	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=1.607;SB=0.00;SOR=1.179;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:290,0,155
1	16382730	rs12030469	C	T	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.674;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=0.977;SB=0.00;SOR=1.329;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:326,0,153
1	16382791	rs12023153	G	C	554.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=-0.455;SB=-1.590e+02;SOR=0.495;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,20:31:99:583,0,297
1	16382827	rs77508204	CTCT	C	1048.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;DB;DP=44;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.97;ReadPosRankSum=2.066;SB=-3.410e+02;SOR=0.276;VQSLOD=4.31;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,20:44:99:1086,0,1258
1	16382831	rs61769890	T	A	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.496;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.14;ReadPosRankSum=1.954;SB=-1.660e+02;SOR=0.276;VQSLOD=6.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,20:42:99:580,0,632
1	16382834	rs61769891	T	A	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.066;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.366;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.33;ReadPosRankSum=1.867;SB=-1.970e+02;SOR=0.385;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,21:45:99:628,0,678
1	16382877	rs7517792	A	G	611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.294;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-1.418;SB=-3.480e+02;SOR=0.438;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,23:53:99:640,0,789
1	16383668	rs6660218	T	G	2148.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-8.090e+02;SOR=1.745;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2177,163,0
1	16383986	rs6604912	G	A	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-1.634;SB=0.00;SOR=0.602;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:302,0,349
1	16384024	rs6604913	T	A	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-1.331;SB=0.00;SOR=0.223;VQSLOD=7.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:89:89,0,245
1	16385042	rs77667563	G	A	150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.572;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.40;MQ0=0;MQRankSum=-0.258;POSITIVE_TRAIN_SITE;QD=8.87;ReadPosRankSum=0.403;SB=0.00;SOR=0.293;VQSLOD=3.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,6:17:99:179,0,355
1	16385248	rs74054903	C	T	421.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7256;MLEAC=1;MLEAF=0.500;MQ=49.20;MQ0=2;MQRankSum=-5.646;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=0.640;SB=-1.950e+02;SOR=0.452;VQSLOD=0.720;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,21:46:99:450,0,689
1	16385250	rs74054904	A	G	478.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.204;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7256;MLEAC=1;MLEAF=0.500;MQ=49.45;MQ0=2;MQRankSum=-6.229;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=0.000;SB=-1.740e+02;SOR=0.646;VQSLOD=0.246;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,23:47:99:507,0,652
1	16385323	rs77017249	A	G	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.771;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=51.02;MQ0=2;MQRankSum=-3.633;POSITIVE_TRAIN_SITE;QD=6.47;ReadPosRankSum=-0.631;SB=-1.640e+02;SOR=0.582;VQSLOD=2.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,15:29:99:216,0,327
1	16385330	rs3978476	G	T	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.943;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.54;MQ0=2;MQRankSum=-2.996;POSITIVE_TRAIN_SITE;QD=7.70;ReadPosRankSum=-0.198;SB=-1.380e+02;SOR=0.743;VQSLOD=2.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,12:24:99:213,0,294
1	16385698	rs2019460	A	G	73.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.97;MQ0=0;MQRankSum=-3.067;POSITIVE_TRAIN_SITE;QD=6.71;ReadPosRankSum=0.525;SB=0.00;SOR=0.859;VQSLOD=2.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,6:11:99:102,0,168
1	16385738	rs33918184	GC	G	214.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=0;MQRankSum=-3.928;POSITIVE_TRAIN_SITE;QD=11.93;RPA=2,1;RU=C;ReadPosRankSum=-1.132;SB=0.00;SOR=0.368;STR;VQSLOD=2.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,7:18:99:252,0,451
1	16385797	rs3978478	C	G	435.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=54.66;MQ0=0;MQRankSum=-1.916;QD=7.51;ReadPosRankSum=-0.936;SB=-1.330e+02;SOR=0.728;VQSLOD=0.628;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,19:58:99:464,0,1032
1	16386305	.	G	GC	109.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.11;MQ0=0;MQRankSum=-0.190;POSITIVE_TRAIN_SITE;QD=7.84;RPA=5,6;RU=C;ReadPosRankSum=-1.594;SB=-2.701e+01;SOR=1.112;STR;VQSLOD=3.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:99:147,0,286
1	16386416	rs9442230	G	A	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=0;MQRankSum=-1.126;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-0.844;SB=-1.630e+02;SOR=0.569;VQSLOD=3.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,12:25:99:277,0,383
1	16386447	rs11576236	G	C	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.22;MQ0=0;MQRankSum=-0.819;POSITIVE_TRAIN_SITE;QD=6.18;ReadPosRankSum=-0.211;SB=-9.000e+01;SOR=0.813;VQSLOD=2.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,10:26:99:189,0,402
1	16386495	rs71510977	C	T	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.30;MQ0=0;MQRankSum=-2.547;QD=4.99;ReadPosRankSum=-0.816;SB=-2.501e+01;SOR=0.941;VQSLOD=1.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:118,0,287
1	16388556	rs2863455	C	T	152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.78;MQ0=0;MQRankSum=-2.429;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-1.299;SB=-8.801e+01;SOR=0.330;VQSLOD=2.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:181,0,103
1	16388565	rs7524413	C	G	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.78;MQ0=0;MQRankSum=-2.429;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=-1.111;SB=-9.201e+01;SOR=0.330;VQSLOD=2.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:189,0,102
1	16388646	rs2863456	T	C	99.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.947;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.71;MQ0=0;MQRankSum=-2.253;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=-0.179;SB=-2.901e+01;SOR=1.270;VQSLOD=2.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:128,0,150
1	16455819	rs77811513	A	G	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-0.041;SB=0.00;SOR=0.793;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:328,0,277
1	16460743	rs147659128	TAAC	T	1546.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;RPA=2,1;RU=AAC;SB=-4.420e+02;SOR=1.863;STR;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:30:84:1584,84,0
1	16525333	rs74394813	C	T	532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.948;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.751;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-1.258;SB=-2.240e+02;SOR=1.145;VQSLOD=7.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,23:56:99:561,0,863
1	16525657	rs148325785	A	G	1261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-0.987;SB=-6.060e+02;SOR=0.762;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,48:94:99:1290,0,1165
1	16528218	rs6676143	G	T	659.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=5.785;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.867;SB=-2.050e+02;SOR=1.292;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,25:51:99:688,0,785
1	16528469	rs151266607	GCCTACCCTAGGGAC	G	2066.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;DB;DP=44;ExcessHet=3.0103;FS=5.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.65;ReadPosRankSum=0.598;SB=-2.657e-01;SOR=2.679;VQSLOD=5.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,13:44:99:2104,0,3414
1	16528484	rs200992860	C	T	392.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.784;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.105;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-0.541;SB=-5.150e-01;SOR=2.584;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:31:99:421,0,593
1	16528843	rs1693540	A	G	310.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-4.276e+01;SOR=3.258;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:339,27,0
1	16532498	rs41269185	G	A	283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.199;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=1.446;SB=-9.401e+01;SOR=0.275;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:312,0,210
1	16533022	rs221052	C	T	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.751;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=0.534;SB=-4.276e+01;SOR=0.264;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:333,0,308
1	16542366	rs41269187	G	A	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.717;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=0.982;SB=-1.610e+02;SOR=0.719;VQSLOD=8.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,17:43:99:398,0,747
1	16542876	rs2273313	A	T	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.686;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=1.466;SB=0.00;SOR=1.061;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:347,0,218
1	16542937	rs2273312	T	G	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.755;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.471;SB=-9.900e+01;SOR=0.869;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,22:41:99:580,0,566
1	16543175	rs221024	A	C	1030.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-4.420e+02;SOR=1.542;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1059,81,0
1	16555566	rs1985782	A	G	264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.163;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-1.052;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-0.684;SB=0.00;SOR=0.481;VQSLOD=3.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,10:23:99:293,0,462
1	16558838	rs6700888	C	A	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=-0.777;SB=-8.400e+01;SOR=1.502;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:279,0,494
1	16559541	rs3738631	C	G	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.768;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.639;HaplotypeScore=2.8661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=-1.098;SB=-5.800e+01;SOR=1.085;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,15:39:99:446,0,687
1	16562968	rs6603850	C	A	288.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-8.097e+01;SOR=2.303;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:317,24,0
1	16577908	rs12069239	G	C	1940.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.300;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=7.403;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-0.959;SB=-1.023e+03;SOR=0.939;VQSLOD=5.75;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,71:143:99:1969,0,2019
1	16583030	.	C	CA	153.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=1.529;QD=5.49;RPA=7,8;RU=A;ReadPosRankSum=0.246;SB=-4.000e+01;SOR=1.022;STR;VQSLOD=1.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,9:28:99:191,0,453
1	16621183	rs1007150	C	T	1690.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-4.950e+02;SOR=2.170;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1719,126,0
1	16632188	rs61769833	G	A	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.186;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.614;SB=-1.765e+00;SOR=1.942;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:332,0,275
1	16641899	rs2273311	C	T	1238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.304;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=2.863;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-0.125;SB=-6.710e+02;SOR=0.411;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1267,0,1219
1	16713555	rs61770604	G	C	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.046;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.178;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.984;SB=-1.320e+02;SOR=1.379;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:483,0,594
1	16714095	rs61770605	C	T	761.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.188;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=0.096;SB=-3.170e+02;SOR=1.115;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,30:64:99:790,0,884
1	16719536	rs77327771	G	A	333.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.29;ReadPosRankSum=-0.475;SB=0.00;SOR=3.442;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,10:11:4:360,0,4
1	16725818	rs41310375	A	G	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.744;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.133;SB=-1.010e+02;SOR=1.179;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:504,0,301
1	16726036	rs61769432	A	G	652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.379;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.422;HaplotypeScore=2.4673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.454;SB=-3.890e+02;SOR=0.181;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,23:45:99:681,0,589
1	16727305	rs373005990	G	GCTT	1393.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=1.187;QD=22.12;RPA=1,2;RU=CTT;ReadPosRankSum=-0.014;SB=-6.250e+02;SOR=0.689;STR;VQSLOD=2.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,27:66:99:1431,0,1926
1	16730413	rs61769436	C	T	1024.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.979;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-1.280;SB=-3.730e+02;SOR=0.737;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,34:67:99:1053,0,985
1	16730582	rs17419150	C	G	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.701;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.92;ReadPosRankSum=0.554;SB=-3.200e+01;SOR=0.527;VQSLOD=8.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:132,0,286
1	16731646	rs3106498	T	C	1453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-5.600e+02;SOR=1.714;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1482,108,0
1	16731647	rs526481	G	C	1480.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-5.590e+02;SOR=1.714;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1509,108,0
1	16731653	rs526489	C	T	502.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.545;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.243;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=1.242;SB=-2.000e+02;SOR=0.495;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,19:45:99:531,0,733
1	16731661	rs526513	T	C	1477.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-4.540e+02;SOR=2.200;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1506,108,0
1	16731756	rs61769437	G	T	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.079;SB=0.00;SOR=0.693;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:198,0,198
1	16736327	rs41269197	G	A	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.513;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-2.388;SB=-6.700e+01;SOR=1.022;VQSLOD=9.09;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:208,0,204
1	16736546	rs10907226	C	T	269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.014;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.696;SB=-1.410e+02;SOR=0.148;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:298,0,429
1	16748432	rs114456729	C	T	1373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.726;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.260;SB=-7.260e+02;SOR=0.605;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,50:106:99:1402,0,1449
1	16754691	rs6693454	G	A	398.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.688;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-0.533;SB=-1.765e+00;SOR=2.235;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:427,0,288
1	16767359	rs114024565	A	G	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.96;ReadPosRankSum=0.679;SB=-6.700e+01;SOR=0.368;VQSLOD=7.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,6:34:99:129,0,715
1	16778265	rs279782	G	T	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.508;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.702;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=-1.108;SB=-2.000e+02;SOR=0.395;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,18:27:99:529,0,264
1	16802533	rs115349413	G	A	66.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.51;ReadPosRankSum=0.186;SB=-5.300e+01;SOR=1.022;VQSLOD=8.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:95:95,0,314
1	16802890	rs696095	G	A	196.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=0.253;SB=-7.000e+01;SOR=1.863;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:54:225,0,54
1	16817310	rs156854	T	C	475.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-2.431e+02;SOR=1.112;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:504,39,0
1	16862150	.	G	A	41.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9887;MLEAC=1;MLEAF=0.500;MQ=46.21;MQ0=0;MQRankSum=-0.319;QD=4.18;ReadPosRankSum=-0.769;SB=0.00;SOR=0.223;VQSLOD=1.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:70:70,0,214
1	16862158	rs2990571	C	T	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9940;MLEAC=1;MLEAF=0.500;MQ=47.63;MQ0=0;MQRankSum=-0.976;QD=9.25;ReadPosRankSum=0.177;SB=0.00;SOR=0.551;VQSLOD=1.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:130,0,195
1	16862186	rs6698704	G	A	78.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.326;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.88;MQ0=0;MQRankSum=-1.056;QD=3.75;ReadPosRankSum=0.496;SB=0.00;SOR=0.117;VQSLOD=1.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,5:21:99:107,0,549
1	16863105	rs80185717	G	C	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.46;MQ0=1;MQRankSum=-1.876;QD=4.90;ReadPosRankSum=-0.160;SB=0.00;SOR=0.180;VQSLOD=1.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:87:87,0,250
1	16863106	rs77252511	G	T	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.45;MQ0=1;MQRankSum=-2.000;QD=4.52;ReadPosRankSum=0.108;SB=0.00;SOR=0.148;VQSLOD=1.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:87:87,0,307
1	16863514	rs79847558	C	T	73.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.129;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=50.60;MQ0=0;MQRankSum=-2.491;QD=2.84;ReadPosRankSum=0.152;SB=0.00;SOR=0.105;VQSLOD=0.984;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,6:26:99:102,0,607
1	16863566	rs202152810	T	C	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.49;MQ0=0;MQRankSum=-2.965;QD=17.80;ReadPosRankSum=-0.728;SB=0.00;SOR=1.270;VQSLOD=2.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:224,0,127
1	16890283	rs156893	G	T	730.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=24.85;SB=0.00;SOR=6.091;VQSLOD=4.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:759,60,0
1	16890760	rs1759170	G	A	1944.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.139;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=52.46;MQ0=0;MQRankSum=-4.635;QD=24.93;ReadPosRankSum=-0.996;SB=-7.101e+01;SOR=1.528;VQSLOD=0.423;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,58:79:99:1973,0,484
1	16890787	rs111418886	ATAGATCCAT	A	1736.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.41;MQ0=0;MQRankSum=-2.182;QD=28.95;RPA=2,1;RU=TAGATCCAT;ReadPosRankSum=0.426;SB=0.00;SOR=2.531;STR;VQSLOD=0.583;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,16:44:99:1774,0,381
1	16890805	.	T	C	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.468;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.3876;MLEAC=1;MLEAF=0.500;MQ=49.19;MQ0=0;MQRankSum=2.816;QD=5.89;ReadPosRankSum=-1.707;SB=0.00;SOR=0.132;VQSLOD=1.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:146,0,458
1	16891243	rs61771012	C	G	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.67;MQ0=2;MQRankSum=-2.185;QD=20.05;ReadPosRankSum=0.338;SB=-4.276e+01;SOR=0.941;VQSLOD=1.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,12:15:78:329,0,78
1	16891485	rs2289551	C	T	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.918;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.88;MQ0=0;MQRankSum=-1.736;QD=18.58;ReadPosRankSum=-0.850;SB=-8.200e+01;SOR=1.270;VQSLOD=2.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,11:15:89:307,0,89
1	16891513	rs79422007	G	A	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.19;MQ0=0;MQRankSum=-0.194;QD=4.52;ReadPosRankSum=0.508;SB=-2.501e+01;SOR=0.765;VQSLOD=1.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:87:87,0,266
1	16891956	rs3872312	C	T	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9973;MLEAC=1;MLEAF=0.500;MQ=55.31;MQ0=0;MQRankSum=1.163;QD=13.60;ReadPosRankSum=-0.691;SB=0.00;SOR=0.569;VQSLOD=2.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:205,0,217
1	16891963	rs56078233	T	A	121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9973;MLEAC=1;MLEAF=0.500;MQ=55.24;MQ0=0;MQRankSum=-1.686;QD=8.12;ReadPosRankSum=2.327;SB=0.00;SOR=0.260;VQSLOD=1.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:150,0,361
1	16892561	rs649559	C	T	918.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=28.71;SB=-5.540e+02;SOR=0.957;VQSLOD=4.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:69:947,69,0
1	16892565	rs202086630	G	A	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.81;MQ0=0;MQRankSum=1.572;QD=5.09;ReadPosRankSum=-0.041;SB=-1.380e+02;SOR=0.540;VQSLOD=1.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,10:32:99:191,0,611
1	16892578	rs112207858	ACT	A	302.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.89;MQ0=0;MQRankSum=-1.979;POSITIVE_TRAIN_SITE;QD=11.64;RPA=2,1;RU=CT;ReadPosRankSum=1.669;SB=-1.190e+02;SOR=0.919;STR;VQSLOD=3.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,8:27:99:340,0,888
1	16893033	.	G	A	797.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.74;MQ0=3;MQRankSum=-1.970;QD=18.99;ReadPosRankSum=-0.021;SB=-4.260e+02;SOR=0.446;VQSLOD=2.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,37:42:76:826,0,76
1	16893441	.	G	A	379.77	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=31.65;SB=0.00;SOR=5.136;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:408,33,0
1	16894323	rs55870077	C	A	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.370;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7921;MLEAC=1;MLEAF=0.500;MQ=46.20;MQ0=1;MQRankSum=0.967;QD=4.48;ReadPosRankSum=-0.588;SB=-5.600e+01;SOR=0.454;VQSLOD=1.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,14:60:99:297,0,1421
1	16894676	rs199727366	C	G	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=49.30;MQ0=0;MQRankSum=-0.996;QD=3.10;ReadPosRankSum=-0.013;SB=-2.801e+01;SOR=0.330;VQSLOD=1.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,9:48:99:177,0,1241
1	16903150	rs61772340	T	C	891.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=0.00;SOR=6.439;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:920,69,0
1	16903663	rs684193	C	T	81.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.168;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.10;MQ0=1;MQRankSum=-2.777;QD=3.89;ReadPosRankSum=-0.262;SB=-1.765e+00;SOR=0.976;VQSLOD=1.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,6:21:99:110,0,454
1	16903674	rs613213	C	T	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.51;MQ0=3;MQRankSum=-3.170;QD=3.92;ReadPosRankSum=0.067;SB=-9.732e-01;SOR=0.927;VQSLOD=0.693;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,8:27:99:134,0,545
1	16903683	rs684166	T	A	146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.016;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.80;MQ0=3;MQRankSum=-3.171;QD=5.24;ReadPosRankSum=-0.182;SB=-9.732e-01;SOR=1.096;VQSLOD=1.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,9:28:99:175,0,549
1	16903780	rs76381029	C	T	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.965;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6292;MLEAC=1;MLEAF=0.500;MQ=48.43;MQ0=6;MQRankSum=0.255;QD=4.09;ReadPosRankSum=1.869;SB=-1.010e+02;SOR=0.737;VQSLOD=0.060;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,18:84:99:372,0,1742
1	16916702	rs4112521	T	C	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.493;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.49;MQ0=0;MQRankSum=-1.863;QD=12.92;ReadPosRankSum=-0.516;SB=0.00;SOR=0.495;VQSLOD=1.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:235,0,311
1	16918611	rs4141869	A	C	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=43.62;MQ0=0;MQRankSum=0.136;QD=17.41;ReadPosRankSum=0.437;SB=-4.276e+01;SOR=0.283;VQSLOD=2.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:272,0,183
1	16931355	.	T	A	152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.671;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.563;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.424;SB=-1.310e+02;SOR=0.202;VQSLOD=4.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,10:36:99:181,0,726
1	16948473	rs446948	C	T	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.15;ReadPosRankSum=2.362;SB=-2.501e+01;SOR=0.941;VQSLOD=7.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:90:90,0,260
1	16948474	rs2781579	C	G	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.56;ReadPosRankSum=0.786;SB=-1.070e+02;SOR=0.631;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:215,0,136
1	16950251	rs55674375	AG	A	200.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=-1.389;POSITIVE_TRAIN_SITE;QD=14.34;RPA=2,1;RU=G;ReadPosRankSum=-0.375;SB=-3.900e+01;SOR=0.446;STR;VQSLOD=3.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:238,0,318
1	16952993	rs942268	C	G	491.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.88;SB=-3.300e+02;SOR=1.022;VQSLOD=3.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:36:520,36,0
1	16953672	rs3738597	C	T	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=0;MQRankSum=-0.886;QD=2.20;ReadPosRankSum=-1.184;SB=-1.905e+01;SOR=0.303;VQSLOD=1.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,5:29:92:92,0,765
1	16953881	.	C	G	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.872;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-2.947;QD=4.92;ReadPosRankSum=0.157;SB=-9.100e+01;SOR=0.538;VQSLOD=1.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,11:42:99:235,0,879
1	16953957	rs4644487	G	A	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=1.108;QD=5.10;ReadPosRankSum=1.078;SB=-1.765e+00;SOR=0.465;VQSLOD=1.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,4:17:99:115,0,399
1	16969095	rs849703	C	A	502.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.685;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=42.00;MQ0=0;MQRankSum=-3.250;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=0.745;SB=0.00;SOR=3.383;VQSLOD=0.017;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,15:17:31:531,0,31
1	16969715	rs9329444	A	G	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.584;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.25;ReadPosRankSum=0.972;SB=-2.657e-01;SOR=2.336;VQSLOD=5.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,10:31:99:315,0,667
1	16971866	rs2224812	G	T	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.521;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.643;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.000;SB=-4.076e+01;SOR=0.031;VQSLOD=4.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:99:133,0,571
1	16972920	.	C	T	1205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.415;DP=215;Dels=0.00;ExcessHet=3.0103;FS=1.249;HaplotypeScore=3.3572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-1.575;SB=-6.630e+02;SOR=0.566;VQSLOD=2.01;culprit=DP	GT:AD:DP:GQ:PL	0/1:159,56:215:99:1234,0,4534
1	16976032	rs2483047	A	C	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.989;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.62;MQ0=4;MQRankSum=1.744;QD=4.87;ReadPosRankSum=0.400;SB=-1.310e+02;SOR=0.746;VQSLOD=0.409;culprit=QD	GT:AD:DP:GQ:PL	0/1:60,16:76:99:398,0,1644
1	17013189	rs2786825	A	G	66.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=-0.869;POSITIVE_TRAIN_SITE;QD=5.14;ReadPosRankSum=-0.852;SB=-5.600e+01;SOR=1.022;VQSLOD=2.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:95:95,0,222
1	17013214	rs10907263	T	C	33.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.000;SB=-5.000e+01;SOR=0.412;VQSLOD=7.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:62:62,0,268
1	17013916	rs59725107	GT	G	371.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;RPA=2,1;RU=T;ReadPosRankSum=0.863;SB=-1.430e+02;SOR=0.892;STR;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:409,0,456
1	17013945	rs545745	A	G	116.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.367;SB=-7.800e+01;SOR=0.512;VQSLOD=7.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,6:24:99:145,0,478
1	17013974	rs545014	C	T	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.918;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.596;SB=-7.700e+01;SOR=0.293;VQSLOD=4.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,6:23:99:118,0,468
1	17022909	rs557582	C	G	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.095;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.539;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-0.594;SB=-1.740e+02;SOR=0.231;VQSLOD=7.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,15:36:99:371,0,625
1	17022952	rs557690	C	A	982.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.417;SB=-4.180e+02;SOR=0.489;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,37:48:99:1011,0,257
1	17023143	rs559507	C	T	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.671;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=5.026;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.019;SB=-1.850e+02;SOR=1.020;VQSLOD=4.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:73,20:93:99:460,0,2174
1	17023182	rs614461	C	G	1158.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=10.224;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.20;ReadPosRankSum=1.222;SB=-5.830e+02;SOR=0.220;VQSLOD=4.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,41:95:99:1187,0,1677
1	17023209	rs112071224	G	A	707.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=5.710;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.80;ReadPosRankSum=0.139;SB=-3.220e+02;SOR=0.312;VQSLOD=4.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:95,27:122:99:736,0,2978
1	17023376	rs613579	C	T	1218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.966;DB;DP=217;Dels=0.00;ExcessHet=3.0103;FS=0.574;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-1.151;SB=-7.290e+02;SOR=0.683;VQSLOD=2.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:162,55:217:99:1247,0,4801
1	17023483	rs563062	C	T	692.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.854;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.768;HaplotypeScore=2.4029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-0.990;SB=-3.470e+02;SOR=0.570;VQSLOD=3.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:116,35:151:99:721,0,3165
1	17023509	.	T	C	529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.618;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=28.0896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-1.542;SB=-2.190e+02;SOR=0.599;VQSLOD=4.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:91,28:121:99:558,0,2665
1	17023511	.	C	A	1249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.829;DP=119;Dels=0.00;ExcessHet=3.0103;FS=2.667;HaplotypeScore=28.0896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.265;SB=-4.950e+02;SOR=0.437;VQSLOD=5.98;culprit=DP	GT:AD:DP:GQ:PL	0/1:66,53:119:99:1278,0,1948
1	17023569	rs563960	T	C	1026.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.298;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=0.917;SB=-7.497e+01;SOR=0.334;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,36:53:99:1055,0,518
1	17023653	rs12119884	G	A	38.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.605;SB=-1.765e+00;SOR=0.582;VQSLOD=7.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:67:67,0,315
1	17026087	rs678369	G	A	83.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=2.609;SB=-4.100e+01;SOR=0.495;VQSLOD=8.54;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:112,0,176
1	17026551	rs665763	G	C	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.73;ReadPosRankSum=-2.230;SB=-1.290e+02;SOR=0.608;VQSLOD=7.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,11:31:99:237,0,565
1	17030325	.	A	G	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.494;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.814;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.000;SB=-1.417e+01;SOR=1.071;VQSLOD=4.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,8:41:99:191,0,936
1	17033758	rs1736691	A	G	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.387;SB=-1.340e+02;SOR=0.475;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,16:40:99:402,0,776
1	17033854	rs2476568	C	T	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.810;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.736;SB=-2.190e+02;SOR=0.921;VQSLOD=5.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,19:56:99:454,0,1174
1	17044457	rs1318341	G	C	285.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=-0.919;SB=-2.901e+01;SOR=1.609;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:314,0,117
1	17044511	rs2773185	T	C	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.239;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=0.554;QD=3.82;ReadPosRankSum=-1.481;SB=-5.300e+01;SOR=0.391;VQSLOD=1.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,8:41:99:185,0,997
1	17044695	rs2773186	A	G	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.981;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.43;ReadPosRankSum=0.631;SB=-5.500e+01;SOR=0.730;VQSLOD=6.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,8:32:99:202,0,799
1	17046361	rs3856291	A	T	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.971;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.538;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.95;ReadPosRankSum=1.519;SB=-5.300e+01;SOR=0.966;VQSLOD=5.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,12:41:99:313,0,906
1	17046456	rs3856292	T	C	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.726;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.196;HaplotypeScore=5.3072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.924;SB=-1.720e+02;SOR=1.176;VQSLOD=5.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:62,25:87:99:636,0,1736
1	17046549	rs1755332	G	A	1293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=4.304;HaplotypeScore=1.9575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=1.019;SB=-8.030e+02;SOR=0.638;VQSLOD=7.02;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,53:125:99:1322,0,1865
1	17046595	.	T	C	1042.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.615;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-0.370;SB=-5.850e+02;SOR=0.935;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,43:104:99:1071,0,1755
1	17046613	rs3856294	C	T	1007.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.920;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.783;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.340;SB=-4.570e+02;SOR=0.864;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,41:100:99:1036,0,1693
1	17046698	rs3982089	C	G	449.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.061;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=3.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.18;ReadPosRankSum=0.128;SB=-1.611e+01;SOR=1.609;VQSLOD=5.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,16:49:99:478,0,903
1	17046796	rs1755333	G	A	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-0.677;SB=0.00;SOR=2.147;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:77:354,0,77
1	17083568	rs10159208	G	A	72.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.489;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-1.813;QD=2.80;ReadPosRankSum=-1.107;SB=0.00;SOR=0.072;VQSLOD=1.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,5:26:99:101,0,776
1	17197779	rs138448635	G	A	833.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.938;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8965;MLEAC=1;MLEAF=0.500;MQ=47.70;MQ0=0;MQRankSum=-3.827;QD=11.58;ReadPosRankSum=-0.516;SB=-1.765e+00;SOR=1.314;VQSLOD=0.197;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,32:72:99:862,0,1295
1	17197798	rs112783082	A	G	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.551;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.9978;MLEAC=1;MLEAF=0.500;MQ=46.78;MQ0=0;MQRankSum=-4.749;QD=12.25;ReadPosRankSum=-0.868;SB=-1.765e+00;SOR=1.439;VQSLOD=0.335;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,25:54:99:690,0,939
1	17197817	rs143935929	C	A	354.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.633;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=45.69;MQ0=0;MQRankSum=-3.465;QD=9.85;ReadPosRankSum=-0.536;SB=-1.765e+00;SOR=1.051;VQSLOD=1.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,14:36:99:383,0,667
1	17197818	rs201954177	C	G	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.949;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=45.80;MQ0=0;MQRankSum=-3.523;QD=9.75;ReadPosRankSum=-0.682;SB=-1.765e+00;SOR=1.085;VQSLOD=1.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,13:33:99:350,0,555
1	17197859	.	G	A	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.796;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.12;MQ0=0;MQRankSum=-1.060;QD=7.52;ReadPosRankSum=-1.043;SB=0.00;SOR=0.260;VQSLOD=1.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:141,0,308
1	17248500	rs6683035	A	G	258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=-0.490;SB=-1.470e+02;SOR=0.743;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:96:287,0,96
1	17248532	rs6586566	A	G	400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.05;SB=-3.200e+02;SOR=0.693;VQSLOD=4.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:30:429,30,0
1	17249395	rs6586567	A	G	634.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.558;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.48;ReadPosRankSum=1.136;SB=-9.000e+01;SOR=1.038;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,20:31:99:663,0,277
1	17250762	.	G	C	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.026;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.36;ReadPosRankSum=0.423;SB=-1.905e+01;SOR=2.066;VQSLOD=5.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:206,0,329
1	17250836	.	A	G	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.314;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.438;SB=-5.600e+01;SOR=2.044;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:288,0,381
1	17251055	.	C	T	908.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.111;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.48;ReadPosRankSum=0.665;SB=-5.170e+02;SOR=0.805;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,33:52:99:937,0,451
1	17264920	rs4463721	C	T	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.658;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-0.062;SB=-8.097e+01;SOR=0.061;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,7:14:99:169,0,234
1	17264939	.	T	C	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;DP=15;Dels=0.00;ExcessHet=3.0103;FS=6.990;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-0.506;SB=-7.497e+01;SOR=0.048;VQSLOD=5.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,7:15:99:172,0,281
1	17265171	.	A	G	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.943;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.90;ReadPosRankSum=-0.307;SB=-1.030e+02;SOR=0.307;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:207,0,197
1	17265327	rs4269813	A	G	413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.108;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.26;ReadPosRankSum=0.137;SB=-1.790e+02;SOR=0.881;VQSLOD=5.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,18:57:99:442,0,1015
1	17265366	rs4269812	C	G	697.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.934;HaplotypeScore=3.3976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-0.599;SB=-3.100e+02;SOR=0.988;VQSLOD=7.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,29:75:99:726,0,1225
1	17265560	rs9435793	C	T	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.831;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-0.578;SB=-4.276e+01;SOR=0.193;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:367,0,411
1	17267302	rs6586577	A	G	119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.616;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.751;SB=-8.200e+01;SOR=0.610;VQSLOD=6.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,6:28:99:148,0,561
1	17270498	rs9435717	T	G	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=-1.140;QD=8.65;ReadPosRankSum=0.000;SB=-2.801e+01;SOR=1.230;VQSLOD=1.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,7:18:99:184,0,317
1	17270751	rs12025984	G	A	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=0.640;SB=-5.800e+01;SOR=0.760;VQSLOD=8.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,9:28:99:249,0,517
1	17270845	rs71764775	C	CG	204.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=0.126;SB=-4.400e+01;SOR=0.446;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:242,0,327
1	17272436	rs3867302	A	G	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.851;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=0;MQRankSum=-2.603;QD=9.54;ReadPosRankSum=-0.119;SB=-1.930e+02;SOR=0.628;VQSLOD=1.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,14:31:99:324,0,538
1	17273444	rs7545185	G	A	51.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.88;ReadPosRankSum=1.597;SB=-2.203e+01;SOR=0.892;VQSLOD=8.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:18:80:80,0,410
1	17295679	rs4920574	T	C	1023.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.44;SB=-6.680e+02;SOR=0.804;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:75:1052,75,0
1	17301448	rs2235933	C	T	264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.91;MQ0=0;MQRankSum=-0.967;POSITIVE_TRAIN_SITE;QD=22.06;ReadPosRankSum=2.509;SB=0.00;SOR=1.445;VQSLOD=2.26;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:293,0,118
1	17301672	rs761423	T	C	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.729;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-0.828;SB=-1.260e+02;SOR=1.009;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:369,0,322
1	17301780	rs761422	A	G	289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.956;SB=-1.790e+02;SOR=0.673;VQSLOD=10.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:318,0,268
1	17303589	rs2235932	C	T	807.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.741;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=1.574;SB=-4.490e+02;SOR=0.627;VQSLOD=8.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,32:73:99:836,0,1063
1	17312743	rs3170740	C	T	262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-1.085;SB=-6.200e+01;SOR=1.781;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:291,0,269
1	17313157	rs2076605	G	A	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-0.168;SB=-5.900e+01;SOR=1.501;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:258,0,232
1	17313244	rs143483351	CCCCAGGGCTCCT	C	809.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=-0.628;SB=-1.764e+00;SOR=1.609;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:847,0,1013
1	17313343	rs9435659	G	A	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.796;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.675;SB=-2.640e+02;SOR=0.542;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:457,0,368
1	17313454	rs7531163	G	A	555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.791;HaplotypeScore=2.3264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.85;ReadPosRankSum=-0.189;SB=-2.430e+02;SOR=0.157;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:29:99:584,0,245
1	17313654	rs761421	C	T	668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.745;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-0.781;SB=-3.500e+02;SOR=0.814;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,28:52:99:697,0,677
1	17314702	rs3738815	C	T	1873.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=8.311;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-1.162;SB=-7.190e+02;SOR=1.422;VQSLOD=4.78;culprit=DP	GT:AD:DP:GQ:PL	0/1:59,66:125:99:1902,0,1655
1	17318065	rs2076604	T	C	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=0.325;SB=0.00;SOR=1.445;VQSLOD=10.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:282,0,123
1	17319011	rs2076603	G	A	574.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=17.625;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.165;SB=-1.490e+02;SOR=2.137;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:603,0,694
1	17319287	rs4920608	C	T	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.755;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.47;ReadPosRankSum=0.595;SB=-5.900e+01;SOR=0.569;VQSLOD=8.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,9:25:99:190,0,455
1	17328301	rs2871776	T	C	328.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-3.976e+01;SOR=3.258;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:357,27,0
1	17331676	rs3738814	A	G	1261.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.20;SB=-4.710e+02;SOR=1.670;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:96:1290,96,0
1	17354297	rs33927012	A	G	1416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.549;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=1.255;SB=-8.140e+02;SOR=0.737;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,56:117:99:1445,0,1663
1	17359676	rs1022580	C	A	2978.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-1.011e+03;SOR=1.994;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3007,217,0
1	17371223	rs2647169	C	T	666.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.944;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=1.329;SB=-2.570e+02;SOR=0.794;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,26:59:99:695,0,829
1	17380269	rs2746463	G	C	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-1.214;SB=-1.830e+02;SOR=1.022;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,12:16:62:277,0,62
1	17380497	rs2746462	G	T	458.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-2.800e+02;SOR=0.818;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:487,36,0
1	17398066	rs875219	G	C	1017.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.745;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.534;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=0.590;SB=-1.970e+02;SOR=1.270;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,33:67:99:1046,0,883
1	17398069	rs875218	T	C	904.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.799;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=4.745;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.660;SB=-1.240e+02;SOR=1.746;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,32:63:99:933,0,828
1	17401283	rs3818041	C	T	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.993;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.52;ReadPosRankSum=0.508;SB=-1.765e+00;SOR=0.495;VQSLOD=8.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:87:87,0,324
1	17402116	rs3818035	G	T	1302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.833;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=5.452;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.518;SB=-7.480e+02;SOR=0.326;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,46:88:99:1331,0,1046
1	17402135	rs3818034	T	C	1412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.156;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=4.917;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-0.465;SB=-7.450e+02;SOR=0.375;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,50:100:99:1441,0,1345
1	17402159	rs3818033	G	A	1344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.985;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-0.606;SB=-7.010e+02;SOR=0.507;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,45:96:99:1373,0,1346
1	17402255	rs3818032	C	T	1338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.709;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.108;SB=-7.330e+02;SOR=0.583;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,51:110:99:1367,0,1533
1	17402347	rs2647205	C	T	2090.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-1.036e+03;SOR=1.085;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2119,160,0
1	17402374	rs12732522	G	C	832.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.231;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-0.217;SB=-4.300e+02;SOR=0.616;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,31:53:99:861,0,585
1	17402418	rs3818031	A	G	613.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.137;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=1.545;SB=-2.090e+02;SOR=0.254;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,21:40:99:642,0,527
1	17402420	.	A	G	525.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.806;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-1.450;SB=-8.400e+01;SOR=1.495;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:554,0,617
1	17406015	rs2057093	C	T	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=0.836;SB=-3.501e+01;SOR=1.329;VQSLOD=10.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:408,0,268
1	17406039	rs11805924	G	A	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.333;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=-0.980;SB=-1.765e+00;SOR=1.085;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:190,0,325
1	17409017	rs2076617	G	A	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=-0.306;SB=-2.070e+02;SOR=0.103;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:322,0,420
1	17409241	rs2235925	G	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.357;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=11.326;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=2.891;SB=-1.205e+02;SOR=0.021;VQSLOD=4.83;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,9:20:99:235,0,394
1	17411010	rs761427	G	A	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.001;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.897;SB=-6.100e+01;SOR=0.576;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:470,0,558
1	17413121	rs2076615	A	C	1498.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.711;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=3.751;HaplotypeScore=1.9198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=1.219;SB=-9.350e+02;SOR=0.358;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,55:102:99:1527,0,1269
1	17418883	rs2647184	A	G	2377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-6.970e+02;SOR=2.336;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2406,178,0
1	17418894	rs2273111	A	G	1083.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.720;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=1.981;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-1.069;SB=-4.850e+02;SOR=0.422;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,42:84:99:1112,0,1130
1	17419024	rs11203297	G	A	2190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.491;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.635;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=1.170;SB=-1.226e+03;SOR=0.568;VQSLOD=6.78;culprit=DP	GT:AD:DP:GQ:PL	0/1:61,90:151:99:2219,0,1506
1	17419066	rs11203298	T	C	1022.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.783;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=0.935;SB=-4.840e+02;SOR=0.651;VQSLOD=7.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:80,42:122:99:1051,0,2062
1	17422192	rs2076610	G	A	324.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-3.876e+01;SOR=3.258;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:353,27,0
1	17422226	rs2076609	C	T	350.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.339;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=1.287;SB=-8.097e+01;SOR=0.804;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,11:13:44:379,0,44
1	17422302	rs2076608	T	C	795.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.515;SB=-3.350e+02;SOR=0.258;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,27:43:99:824,0,468
1	17422610	rs2235918	A	G	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.078;SB=0.00;SOR=0.446;VQSLOD=10.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:169,0,239
1	17445603	rs112151621	G	T	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.80;ReadPosRankSum=-1.200;SB=-4.076e+01;SOR=0.061;VQSLOD=6.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:92:92,0,250
1	17531582	rs2293910	G	A	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=-1.235;SB=-1.010e+02;SOR=1.292;VQSLOD=10.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,15:22:99:441,0,207
1	17550121	rs2293912	G	A	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.732;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=0.397;SB=-1.000e+02;SOR=1.646;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:521,0,400
1	17550225	rs3003481	T	C	2316.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.209e+03;SOR=0.984;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2345,172,0
1	17550314	rs2293914	G	A	706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.476;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.178;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.355;SB=-2.130e+02;SOR=1.427;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,28:54:99:735,0,813
1	17552875	rs2977290	A	G	146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=-0.051;SB=-6.700e+01;SOR=0.836;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:175,0,251
1	17557039	rs10888010	T	C	533.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.399;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=8.279;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=1.787;SB=-5.455e+00;SOR=2.346;VQSLOD=6.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,19:62:99:562,0,1323
1	17557133	rs3003406	A	C	1247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.079;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=6.625;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.26;ReadPosRankSum=0.094;SB=-4.420e+02;SOR=1.334;VQSLOD=6.05;culprit=DP	GT:AD:DP:GQ:PL	0/1:99,52:151:99:1276,0,2620
1	17557310	rs3003407	G	A	795.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.016;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=-1.086;SB=-6.500e+01;SOR=0.929;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,27:49:99:824,0,722
1	17594592	rs4339902	G	A	438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.354;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.292;HaplotypeScore=4.2137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=-1.878;SB=-6.200e+01;SOR=0.192;VQSLOD=6.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,18:56:99:467,0,1319
1	17594645	rs4262594	A	G	68.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.164;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.27;ReadPosRankSum=1.703;SB=-1.765e+00;SOR=0.297;VQSLOD=8.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:21:97:97,0,628
1	17597181	rs10888013	A	G	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.237;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.04;ReadPosRankSum=-0.793;SB=-2.901e+01;SOR=0.963;VQSLOD=8.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:20:99:189,0,420
1	17597655	rs2293916	C	T	863.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.822;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.425;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-1.411;SB=-3.410e+02;SOR=1.179;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,34:67:99:892,0,836
1	17597745	rs3900818	C	T	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.563;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.363;SB=-1.765e+00;SOR=1.071;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:243,0,414
1	17601083	rs2293917	C	T	809.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=1.615;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.17;ReadPosRankSum=0.003;SB=-4.680e+02;SOR=0.739;VQSLOD=7.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:77,36:113:99:838,0,2070
1	17607068	rs2272630	T	C	470.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=17.073;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-1.450;SB=-1.270e+02;SOR=1.608;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,17:49:99:499,0,1127
1	17609448	rs2293920	G	T	716.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.844;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=5.609;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=-1.528;SB=-1.660e+02;SOR=1.781;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,24:37:99:745,0,311
1	17635036	rs2501798	G	C	337.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=-8.097e+01;SOR=2.303;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:366,27,0
1	17657534	rs11203366	G	A	504.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.227;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.836;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.70;ReadPosRankSum=1.392;SB=-1.980e+02;SOR=1.276;VQSLOD=7.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,21:58:99:533,0,987
1	17657616	rs11203367	T	C	659.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-1.946;SB=-3.790e+02;SOR=0.591;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,25:56:99:688,0,897
1	17660499	rs874881	G	C	735.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=4.070;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.472;SB=-2.050e+02;SOR=1.458;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,25:53:99:764,0,739
1	17660660	rs874882	G	A	1030.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.002;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-0.527;SB=-4.980e+02;SOR=0.534;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,41:68:99:1059,0,693
1	17660697	rs1548323	T	C	750.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.800;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.321;HaplotypeScore=3.5335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.641;SB=-2.790e+02;SOR=0.417;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,29:49:99:779,0,514
1	17661128	rs1555658	A	C	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.408;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.035;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.93;ReadPosRankSum=2.220;SB=-1.709e+01;SOR=1.948;VQSLOD=5.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:135,0,274
1	17662541	rs1748034	A	C	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-0.704;SB=-4.076e+01;SOR=0.223;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:334,0,339
1	17662639	rs2240340	T	C	1084.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.284;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.892;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-0.271;SB=-4.610e+02;SOR=0.540;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1113,0,1296
1	17662662	rs1748033	T	C	1134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.796;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-0.347;SB=-5.600e+02;SOR=0.581;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,46:99:99:1163,0,1481
1	17662751	rs1621005	C	G	1285.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=1.532;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-1.338;SB=-8.290e+02;SOR=0.547;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,52:109:99:1314,0,1501
1	17662804	rs1748032	C	T	923.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.739;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.678;HaplotypeScore=2.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=1.331;SB=-3.620e+02;SOR=0.333;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,36:74:99:952,0,1163
1	17662907	rs1748031	A	T	437.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-0.415;SB=-1.640e+02;SOR=0.784;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:466,0,466
1	17664770	rs1635586	A	G	668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.225;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=-2.631;SB=-4.176e+01;SOR=0.941;VQSLOD=9.12;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,20:27:99:697,0,201
1	17664813	rs1635585	T	G	228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=1.732;SB=0.00;SOR=1.609;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:88:257,0,88
1	17666508	rs11203368	C	T	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.747;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=0.719;SB=-1.010e+02;SOR=0.368;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:251,0,320
1	17668270	rs1748021	A	G	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.065;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.232;SB=-1.060e+02;SOR=0.512;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:309,0,371
1	17672730	rs2301888	G	A	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.555;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.543;SB=-1.765e+00;SOR=1.085;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:199,0,336
1	17674402	rs2240336	C	T	946.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.852;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=6.152;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-0.988;SB=-1.150e+02;SOR=1.688;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,31:73:99:975,0,1115
1	17674537	rs2240335	C	A	1988.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.591;HaplotypeScore=4.4912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.518;SB=-1.193e+03;SOR=0.798;VQSLOD=7.30;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,78:158:99:2017,0,2083
1	17681277	rs6683201	T	C	949.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.54;SB=0.00;SOR=6.518;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:978,72,0
1	17683041	rs1635567	T	C	1808.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.053;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=4.248;HaplotypeScore=2.8318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=1.680;SB=-9.490e+02;SOR=0.403;VQSLOD=7.37;culprit=DP	GT:AD:DP:GQ:PL	0/1:70,68:138:99:1837,0,1880
1	17683157	rs1635566	A	G	721.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.299;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=1.061;SB=-4.176e+01;SOR=0.289;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,22:40:99:750,0,616
1	17685174	rs2428735	T	C	729.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.978;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.145;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=1.016;SB=-3.210e+02;SOR=0.425;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,28:53:99:758,0,666
1	17699465	rs112394991	G	A	995.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.995;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-1.059;SB=-2.080e+02;SOR=0.873;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,36:72:99:1024,0,1088
1	17707739	rs1204898	T	C	1757.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.761;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.17;ReadPosRankSum=0.196;SB=-4.830e+02;SOR=1.249;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,52:53:95:1786,95,0
1	17707798	rs10788668	C	T	771.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5473;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-3.677e+01;SOR=4.003;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:63:800,63,0
1	17708349	rs7556072	G	A	1041.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-8.297e+01;SOR=4.479;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:81:1070,81,0
1	17718418	rs72637462	C	T	357.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=0.00;SOR=4.804;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:386,30,0
1	17718671	rs10709483	AG	A	2452.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.55;RPA=3,2;RU=G;SB=-1.049e+03;SOR=1.123;STR;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:62:99:2490,178,0
1	17720391	rs6678552	G	A	2592.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=-9.540e+02;SOR=1.640;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2621,199,0
1	17720439	rs6695849	T	C	3370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-1.672e+03;SOR=1.049;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3399,253,0
1	17720615	rs10458537	A	C	3940.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-1.990e+03;SOR=1.115;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3969,286,0
1	17720686	rs34075690	AG	A	2842.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.17;RPA=6,5;RU=G;SB=-1.171e+03;SOR=1.136;STR;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:82:99:2880,238,0
1	17721388	rs6691485	C	T	550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-4.176e+01;SOR=4.294;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:579,45,0
1	17721695	rs369334834	GTTT	G	817.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.407;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.300;POSITIVE_TRAIN_SITE;QD=29.20;RPA=15,12;RU=T;ReadPosRankSum=1.876;SB=-2.351e+02;SOR=0.693;STR;VQSLOD=2.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,26:31:40:855,40,0
1	17721715	.	G	T	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.887;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=50.3183;MLEAC=1;MLEAF=0.500;MQ=58.10;MQ0=0;MQRankSum=-0.374;QD=15.49;ReadPosRankSum=0.208;SB=-6.800e+01;SOR=1.085;VQSLOD=2.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,15:26:99:431,0,372
1	17721721	rs147310450	TGA	T	904.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;RPA=2,1;RU=GA;SB=-1.295e+02;SOR=2.948;STR;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:25:57:942,57,0
1	17722363	rs7538876	G	A	750.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=0.00;SOR=5.994;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:779,57,0
1	17723476	rs367811358	C	CCA	1416.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;RPA=1,2;RU=CA;SB=-5.676e+01;SOR=5.283;STR;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1454,84,0
1	17723739	rs12129196	G	A	1938.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=-4.300e+02;SOR=2.794;VQSLOD=5.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1967,144,0
1	17725011	rs1555663	T	C	523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;SB=-2.401e+02;SOR=1.493;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:552,39,0
1	17725358	rs2244936	C	G	1762.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-8.750e+02;SOR=1.392;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1791,129,0
1	17736578	rs2762890	A	G	598.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-4.076e+01;SOR=4.174;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:627,48,0
1	17739586	rs942457	G	A	556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SB=0.00;SOR=5.549;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:585,45,0
1	17739820	rs1075535	T	C	1029.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.83;SB=-3.900e+02;SOR=1.949;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:81:1058,81,0
1	17752000	rs1324368	A	G	524.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=0.00;SOR=5.549;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:553,45,0
1	17907505	rs11203423	A	G	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-1.408;SB=0.00;SOR=0.836;VQSLOD=10.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:248,0,200
1	17914846	rs1193343	C	T	395.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=0.00;SOR=3.611;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:424,33,0
1	17929980	rs1193338	C	G	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.914;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-1.380;SB=-3.060e+02;SOR=0.643;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,27:61:99:628,0,928
1	17974989	rs143870921	A	G	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=1.340;SB=-6.900e+01;SOR=1.270;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:266,0,160
1	17991052	rs6695710	T	C	387.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.70;SB=-1.851e+02;SOR=1.329;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:416,30,0
1	18017522	rs871087	T	C	521.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.46;SB=-1.473e+02;SOR=2.303;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:550,39,0
1	18017558	rs871088	A	G	913.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-4.340e+02;SOR=1.402;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:942,72,0
1	18017704	rs871089	C	T	997.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-4.120e+02;SOR=1.751;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1026,75,0
1	18021406	rs905389	T	C	2652.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-1.384e+03;SOR=1.085;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2681,193,0
1	18023290	rs2270979	C	T	452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-1.921e+02;SOR=1.329;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:481,36,0
1	18023365	rs2270978	C	T	909.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-2.790e+02;SOR=1.765;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:69:938,69,0
1	18023509	rs2270977	T	C	2386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-1.256e+03;SOR=1.091;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2415,175,0
1	18023690	rs2270976	A	G	2104.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-1.016e+03;SOR=1.098;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2133,160,0
1	18023997	.	G	GC	647.73	PASS	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;RPA=1,2;RU=C;SB=-2.801e+02;SOR=1.112;STR;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:685,45,0
1	18149510	rs694214	G	T	1378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.198;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=5.601;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-0.230;SB=-5.370e+02;SOR=0.291;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,53:114:99:1407,0,1907
1	18149566	rs2296035	C	A	2070.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.868;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=0.583;HaplotypeScore=5.9055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.258;SB=-8.900e+02;SOR=0.631;VQSLOD=6.64;culprit=DP	GT:AD:DP:GQ:PL	0/1:101,77:178:99:2099,0,2941
1	18152582	rs478698	C	T	1240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.404;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.870;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-0.787;SB=-3.730e+02;SOR=1.082;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,43:99:99:1269,0,1597
1	18618220	rs78897314	C	T	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.844;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.996;SB=0.00;SOR=0.384;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,12:30:99:403,0,604
1	18661583	rs536540	T	C	1028.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.030;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-0.891;SB=-3.580e+02;SOR=0.486;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1057,0,994
1	18702563	rs10157096	A	G	189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-1.188;SB=0.00;SOR=1.022;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:218,0,164
1	18704862	rs1043459	A	G	430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.117;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.363;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.168;SB=-1.460e+02;SOR=1.179;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:459,0,507
1	18807536	rs7512414	G	T	1010.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.998;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-1.157;SB=-5.730e+02;SOR=0.752;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,38:83:99:1039,0,1210
1	18807620	rs34109355	G	C	674.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.711;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=1.170;SB=-3.920e+02;SOR=0.354;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,28:59:99:703,0,853
1	18807755	rs34976233	G	A	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.782;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.377;SB=-1.820e+02;SOR=0.418;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:402,0,559
1	18807781	rs35013594	C	T	493.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.632;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.685;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-1.865;SB=-2.440e+02;SOR=0.169;VQSLOD=7.23;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,18:34:99:522,0,489
1	18807897	rs2992755	C	G	778.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-0.780;SB=-3.050e+02;SOR=1.151;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,29:61:99:807,0,910
1	18808056	rs7515150	G	C	2029.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.316;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=3.982;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-1.382;SB=-1.313e+03;SOR=0.433;VQSLOD=7.13;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,77:142:99:2058,0,1650
1	18808069	rs7528572	A	G	1907.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.106;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-0.413;SB=-1.192e+03;SOR=0.661;VQSLOD=8.78;culprit=DP	GT:AD:DP:GQ:PL	0/1:67,72:139:99:1936,0,1693
1	18808292	rs2992753	C	A	1498.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.975;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=4.702;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=0.743;SB=-7.120e+02;SOR=0.987;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,52:106:99:1527,0,1511
1	18808465	rs3007718	T	A	833.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-2.382;SB=-3.250e+02;SOR=0.784;VQSLOD=8.59;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,29:59:99:862,0,909
1	18808526	rs2992752	A	C	609.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.134;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=2.470;SB=-3.500e+02;SOR=0.798;VQSLOD=8.07;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:35,24:59:99:638,0,1055
1	18809351	rs137875112	G	C	686.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.31;ReadPosRankSum=-0.538;SB=-3.800e+02;SOR=0.495;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,26:48:99:715,0,617
1	18810344	rs2992740	G	T	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.688;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.630;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.078;SB=-2.701e+01;SOR=1.885;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:402,0,348
1	18810349	rs6667069	G	C	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.630;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=1.335;SB=-2.901e+01;SOR=1.885;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:418,0,327
1	19027239	rs2743201	A	G	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.569;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.712;SB=-1.690e+02;SOR=1.112;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:405,0,264
1	19029546	rs1416464	A	G	285.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=-0.172;SB=0.00;SOR=1.981;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:81:314,0,81
1	19071194	.	G	A	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.05;ReadPosRankSum=0.543;SB=-9.732e-01;SOR=2.584;VQSLOD=5.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:189,0,290
1	19071195	.	G	A	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.11;ReadPosRankSum=0.597;SB=-5.150e-01;SOR=2.584;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:190,0,289
1	19166294	rs12033832	G	A	3732.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.923;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.74;ReadPosRankSum=1.702;SB=-1.575e+03;SOR=0.631;VQSLOD=2.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,113:114:99:3761,280,0
1	19168478	.	G	A	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.928;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=37.2435;MLEAC=1;MLEAF=0.500;MQ=62.65;MQ0=0;MQRankSum=1.734;QD=6.53;ReadPosRankSum=1.851;SB=-1.765e+00;SOR=0.536;VQSLOD=1.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,7:36:99:198,0,218
1	19168478	.	G	GA	398.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQ0=0;MQRankSum=1.795;QD=13.29;RPA=15,16;RU=A;ReadPosRankSum=-0.104;SB=0.00;SOR=2.621;STR;VQSLOD=1.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,24:36:45:436,0,45
1	19168533	rs12082240	C	T	274.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=63.71;MQ0=0;MQRankSum=-1.059;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-1.186;SB=0.00;SOR=0.804;VQSLOD=3.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:303,0,279
1	19176254	rs6675384	C	T	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-2.063;SB=0.00;SOR=0.446;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:161,0,252
1	19181015	rs34447754	G	C	656.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-0.660;SB=-3.280e+02;SOR=0.905;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,23:46:99:685,0,701
1	19181082	rs28470550	A	C	771.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.959;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.887;SB=-2.720e+02;SOR=1.295;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,27:51:99:800,0,626
1	19181336	rs200290887	C	G	1631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.871;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-0.953;SB=-9.790e+02;SOR=0.693;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,59:118:99:1660,0,1663
1	19181393	rs35874116	T	C	1440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=1.500;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.696;SB=-8.280e+02;SOR=0.525;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,53:117:99:1469,0,1728
1	19184077	rs68081213	A	G	1545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.682;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-0.688;SB=-5.570e+02;SOR=0.646;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,57:116:99:1574,0,1697
1	19184176	rs72953138	G	A	547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=1.830;SB=-8.900e+01;SOR=0.671;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,20:46:99:576,0,778
1	19186129	rs9701796	G	C	1216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.730;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=5.717;HaplotypeScore=1.9576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=-0.076;SB=-6.610e+02;SOR=0.827;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1245,0,1012
1	19186320	rs9701803	G	C	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.820;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.08;ReadPosRankSum=-0.043;SB=-1.709e+01;SOR=1.022;VQSLOD=6.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,7:34:99:201,0,800
1	19199487	rs35255325	A	G	1270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.556;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=2.771;HaplotypeScore=1.5781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=1.591;SB=-6.000e+02;SOR=1.146;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,46:93:99:1299,0,1272
1	19200895	rs35657817	C	T	571.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-1.410;SB=-2.450e+02;SOR=0.776;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,23:52:99:600,0,753
1	19201184	rs6665917	G	C	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=1.525;SB=-3.100e+01;SOR=0.473;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:184,0,315
1	19201928	rs2230709	C	T	1308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.217;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.766;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=1.911;SB=-5.510e+02;SOR=0.858;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,47:102:99:1337,0,1559
1	19201956	rs2230708	A	G	1580.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=2.416;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.382;SB=-8.060e+02;SOR=0.504;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,59:118:99:1609,0,1677
1	19202176	rs41273173	G	A	194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-0.098;SB=0.00;SOR=0.425;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:223,0,348
1	19202770	rs7550822	T	C	1857.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-9.840e+02;SOR=1.123;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1886,135,0
1	19202896	rs2230707	G	A	664.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.404;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.823;HaplotypeScore=1.8279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=1.210;SB=-1.450e+02;SOR=2.030;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,22:46:99:693,0,635
1	19202917	rs7550938	T	C	623.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.823;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.466;SB=-1.610e+02;SOR=1.880;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,22:45:99:652,0,578
1	19202926	rs2230706	T	C	521.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.885;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.918;SB=-1.600e+02;SOR=1.473;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:550,0,601
1	19203997	rs2230705	C	G	3160.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-2.015e+03;SOR=0.793;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3189,229,0
1	19204154	rs6426813	G	A	1091.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-2.321e+02;SOR=2.303;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1120,84,0
1	19204173	rs6426814	A	G	1008.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-1.165e+02;SOR=3.767;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:1037,75,0
1	19208145	rs66962914	G	GGGTTGCCT	5041.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;SB=-1.737e+03;SOR=1.609;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:47:99:5079,138,0
1	19208944	rs28566028	A	G	858.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-2.441e+02;SOR=2.468;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:887,69,0
1	19209543	rs6426611	A	G	1265.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-4.980e+02;SOR=1.609;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1294,102,0
1	19215834	rs941495	T	C	3323.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-1.587e+03;SOR=1.343;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3352,244,0
1	19216428	rs4592275	G	A	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.125;SB=-6.400e+01;SOR=1.329;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:201,0,239
1	19238001	rs371041500	T	TTTTA	465.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=1.100;POSITIVE_TRAIN_SITE;QD=17.46;RPA=11,12;RU=TTTA;ReadPosRankSum=0.681;SB=-5.200e+01;SOR=0.693;STR;VQSLOD=3.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:45:99:503,0,441
1	19243589	rs3748586	A	G	894.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.482;HaplotypeScore=1.7834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=0.694;SB=-3.170e+02;SOR=1.112;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:923,0,562
1	19243651	rs78284463	G	A	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.868;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.397;SB=-9.700e+01;SOR=0.853;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:430,0,467
1	19401445	rs41273185	C	T	824.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.912;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.128;SB=-3.980e+02;SOR=0.850;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,30:71:99:853,0,1119
1	19401542	rs16862503	A	T	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=0.792;SB=-1.390e+02;SOR=0.892;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,21:35:99:611,0,374
1	19410913	rs79727477	G	A	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.178;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=-1.365;SB=0.00;SOR=0.293;VQSLOD=9.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:178,0,396
1	19411129	rs1043905	A	G	1488.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=-1.018;SB=-8.860e+02;SOR=0.683;VQSLOD=8.16;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,63:140:99:1517,0,1972
1	19413420	rs2274008	T	G	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.016;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.830;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=-0.018;SB=-6.500e+01;SOR=1.201;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:557,0,477
1	19419251	rs75794545	G	C	921.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.637;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=4.036;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-1.378;SB=-5.330e+02;SOR=0.989;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,38:88:99:950,0,1452
1	19420392	rs1106839	G	A	495.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.892;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.258;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.01;ReadPosRankSum=-0.886;SB=-1.700e+02;SOR=0.471;VQSLOD=7.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,19:55:99:524,0,893
1	19426199	rs2236377	G	A	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.649;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-0.491;SB=-6.800e+01;SOR=0.250;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:236,0,355
1	19431700	rs78576462	C	T	593.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.832;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.628;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.561;SB=-1.390e+02;SOR=0.246;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,23:49:99:622,0,862
1	19433449	rs6426677	A	G	438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.707;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=0.041;SB=-2.570e+02;SOR=0.257;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:40:99:467,0,571
1	19440107	rs9661719	A	G	1209.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-4.640e+02;SOR=1.609;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1238,90,0
1	19441212	rs2274003	A	G	585.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.983;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.53;ReadPosRankSum=0.000;SB=0.00;SOR=1.697;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,18:26:99:614,0,233
1	19447498	rs6426678	T	C	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-1.915;SB=0.00;SOR=0.693;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:167,0,169
1	19448089	rs77738095	G	A	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.445;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.792;SB=-2.010e+02;SOR=0.693;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:347,0,278
1	19448312	rs77437768	G	A	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.322;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=1.521;SB=-1.180e+02;SOR=0.715;VQSLOD=8.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,16:53:99:463,0,1115
1	19448326	rs6681662	C	T	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.792;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=1.572;SB=-1.280e+02;SOR=0.739;VQSLOD=8.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,18:58:99:504,0,1138
1	19468288	.	CCA	C	2511.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.422;DP=123;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.93;ReadPosRankSum=2.196;SB=-8.810e+02;SOR=0.818;VQSLOD=4.88;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:67,53:123:99:2549,0,3536
1	19470749	rs2296109	G	C	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.888;SB=-1.760e+02;SOR=0.238;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:315,0,320
1	19471100	rs116422625	C	T	456.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.583;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=-0.693;SB=0.00;SOR=1.179;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:485,0,295
1	19481223	rs114874414	G	A	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.566;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=6.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=0.846;SB=-2.130e+02;SOR=0.144;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:407,0,576
1	19481849	rs79789247	G	A	410.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.015;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-0.155;SB=-6.800e+01;SOR=0.368;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,15:37:99:439,0,719
1	19483209	rs10799710	A	G	675.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.863;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.719;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-2.276;SB=-1.430e+02;SOR=0.364;VQSLOD=7.27;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,24:44:99:704,0,647
1	19484296	.	T	C	653.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.257;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.381;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.453;SB=-3.900e+02;SOR=0.411;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,24:51:99:682,0,672
1	19486839	rs946419	T	C	418.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.929;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.682;HaplotypeScore=2.8256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=-0.911;SB=-1.015e+02;SOR=0.148;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,17:24:99:447,0,182
1	19487656	rs3748759	T	C	1443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.601;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.743;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.391;SB=-6.060e+02;SOR=0.856;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,57:114:99:1472,0,1508
1	19488839	rs1999967	C	A	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=0.344;SB=0.00;SOR=0.836;VQSLOD=10.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:236,0,204
1	19491857	rs3748757	T	C	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=0.374;SB=-3.160e+02;SOR=0.595;VQSLOD=7.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,23:57:99:541,0,920
1	19499835	rs951908	G	C	1093.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.415;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=0.376;SB=-4.960e+02;SOR=0.349;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,34:70:99:1122,0,1163
1	19500729	rs6694521	G	A	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.318;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-0.964;SB=-1.670e+02;SOR=1.022;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:615,0,631
1	19503936	rs78463695	A	T	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.046;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=1.024;SB=-1.020e+02;SOR=0.223;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:258,0,394
1	19510394	rs3762396	A	G	888.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.534;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-0.115;SB=-3.880e+02;SOR=0.758;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,33:59:99:917,0,673
1	19549759	rs710870	G	A	615.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.716;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=0.702;SB=-3.500e+01;SOR=1.329;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,20:32:99:644,0,349
1	19554099	rs7515397	T	G	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-0.108;SB=0.00;SOR=1.085;VQSLOD=10.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:192,0,122
1	19557713	rs2275403	G	C	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.323;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.435;SB=-3.001e+01;SOR=1.292;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:456,0,201
1	19559306	rs79432876	A	G	462.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=0.024;SB=-2.100e+02;SOR=0.458;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:491,0,332
1	19559729	rs16862625	A	G	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.996;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-0.801;SB=-8.100e+01;SOR=0.871;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:31:99:375,0,560
1	19561618	rs79970487	T	C	1045.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.250;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.774;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-0.165;SB=-5.410e+02;SOR=0.866;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,42:98:99:1074,0,1562
1	19565338	rs709682	C	T	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.770;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.482;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-0.127;SB=-2.950e+02;SOR=0.399;VQSLOD=8.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,22:50:99:519,0,770
1	19565344	rs709683	C	G	508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.414;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-0.203;SB=-3.460e+02;SOR=0.399;VQSLOD=7.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,23:52:99:537,0,772
1	19565587	rs75908290	G	T	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.677;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.35;ReadPosRankSum=0.371;SB=-1.840e+02;SOR=0.616;VQSLOD=8.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,16:39:99:354,0,625
1	19566627	rs710869	A	G	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.517;SB=-3.100e+01;SOR=1.179;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:172,0,210
1	19566957	rs16862640	G	A	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=0.686;SB=-1.900e+02;SOR=0.741;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,16:39:99:411,0,602
1	19568722	rs710866	G	C	795.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.901;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=8.862;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.170;SB=-5.000e+01;SOR=2.443;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,26:49:99:824,0,619
1	19568972	rs710865	A	G	1245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.485;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-0.630;SB=-4.590e+02;SOR=0.754;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1274,0,985
1	19578027	rs2294943	C	T	570.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.093;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.954;SB=-9.500e+01;SOR=0.705;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:599,0,705
1	19578192	rs2294942	G	A	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=2.271;SB=-1.040e+02;SOR=0.776;VQSLOD=9.27;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,15:29:99:429,0,482
1	19578385	rs17522898	G	C	469.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.10;ReadPosRankSum=0.777;SB=-2.600e+02;SOR=0.656;VQSLOD=8.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,20:58:99:498,0,1018
1	19581226	rs735026	G	A	772.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.592;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.080;HaplotypeScore=2.8777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=1.292;SB=-4.520e+02;SOR=0.436;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,28:66:99:801,0,1195
1	19581442	.	G	GAAA	302.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;DP=30;ExcessHet=3.0103;FS=4.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.11;RPA=12,15;RU=A;ReadPosRankSum=0.694;SB=-1.140e+02;SOR=0.169;STR;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:30:99:340,0,535
1	19581467	rs1774081	C	T	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.971;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-0.740;SB=-1.020e+02;SOR=0.307;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:240,0,321
1	19582563	rs1557133	G	A	1424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-4.330e+02;SOR=1.845;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1453,108,0
1	19583294	rs76434038	G	A	458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.073;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.217;SB=-1.880e+02;SOR=1.315;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:487,0,400
1	19583330	rs2073102	G	C	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.962;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.720;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.437;SB=-2.510e+02;SOR=0.251;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:475,0,604
1	19583400	rs1774075	A	G	1218.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-7.290e+02;SOR=0.743;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1247,93,0
1	19583680	rs75881622	C	T	652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.301;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.613;HaplotypeScore=3.6546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-0.393;SB=-3.940e+02;SOR=0.260;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,26:41:99:681,0,406
1	19583684	rs1774074	C	T	635.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.789;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-0.335;SB=-3.760e+02;SOR=0.377;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,25:40:99:664,0,440
1	19583725	rs1738017	T	C	787.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=-0.260;SB=-4.080e+02;SOR=0.772;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,29:44:99:816,0,480
1	19583734	rs4912057	G	A	496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.892;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.269;SB=-2.280e+02;SOR=0.787;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,16:44:99:525,0,795
1	19584004	rs1042380	G	A	529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=-1.510;SB=-2.120e+02;SOR=0.399;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,22:56:99:558,0,1040
1	19584030	rs76779645	G	A	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.200;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=-1.947;SB=-2.350e+02;SOR=0.463;VQSLOD=7.13;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,21:50:99:545,0,866
1	19585115	rs2294941	C	G	526.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.659;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-1.884;SB=-2.330e+02;SOR=1.179;VQSLOD=7.44;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,19:42:99:555,0,667
1	19585124	rs2294940	C	T	543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.945;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-1.936;SB=-2.290e+02;SOR=1.284;VQSLOD=7.39;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,20:43:99:572,0,640
1	19585207	rs2294939	G	A	1020.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.965;HaplotypeScore=1.6671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=1.887;SB=-3.280e+02;SOR=0.864;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,38:75:99:1049,0,1089
1	19593676	rs145751450	GT	G	401.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.04;RPA=7,6;RU=T;ReadPosRankSum=-0.813;SB=-2.203e+01;SOR=1.109;STR;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:439,0,557
1	19593826	.	A	C	1093.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.949;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=0;MQRankSum=-2.281;QD=13.02;ReadPosRankSum=-0.489;SB=-6.100e+02;SOR=0.649;VQSLOD=0.742;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1122,0,1080
1	19595137	rs2235795	C	T	497.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.365;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.784;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-0.548;SB=-2.480e+02;SOR=0.179;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:526,0,344
1	19595159	rs116631486	C	T	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.328;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-0.799;SB=-1.440e+02;SOR=1.022;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:534,0,601
1	19595696	rs140814189	C	T	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.069;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-1.543;SB=-1.330e+02;SOR=0.385;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:369,0,541
1	19595760	rs76554243	A	G	648.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.416;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=9.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.319;SB=-4.010e+02;SOR=0.111;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,23:46:99:677,0,653
1	19595892	rs6665423	G	A	629.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=0.190;SB=-1.400e+02;SOR=0.418;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,21:31:99:658,0,284
1	19596124	rs2235794	C	T	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.933;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.480;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.627;SB=-1.270e+02;SOR=1.071;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:35:99:482,0,432
1	19596156	rs6665756	G	T	642.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.223;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.563;SB=-2.350e+02;SOR=1.112;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,22:44:99:671,0,515
1	19597328	rs190747734	A	G	820.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.643;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.894;HaplotypeScore=2.5540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.029;SB=-5.220e+02;SOR=0.757;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,36:72:99:849,0,909
1	19597420	.	G	T	760.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.329;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.131;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.83;ReadPosRankSum=0.025;SB=-2.580e+02;SOR=1.045;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,29:55:99:789,0,709
1	19597477	rs115245335	C	T	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.525;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=0.893;SB=-1.330e+02;SOR=0.418;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:31:99:335,0,471
1	19600370	rs184687027	T	C	129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.38;MQ0=0;MQRankSum=-2.331;POSITIVE_TRAIN_SITE;QD=6.83;ReadPosRankSum=1.649;SB=-9.900e+01;SOR=0.394;VQSLOD=2.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:158,0,361
1	19600376	.	T	G	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.730;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-2.130;QD=8.57;ReadPosRankSum=1.515;SB=-1.030e+02;SOR=0.586;VQSLOD=1.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:174,0,279
1	19600377	.	T	C	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-2.130;QD=8.46;ReadPosRankSum=1.515;SB=-1.030e+02;SOR=0.586;VQSLOD=1.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:172,0,287
1	19600388	rs375898295	G	A	152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=0;MQRankSum=-2.178;QD=8.99;ReadPosRankSum=0.564;SB=-9.900e+01;SOR=0.941;VQSLOD=1.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:181,0,254
1	19609056	rs74644417	A	G	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.007;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-1.926;SB=0.00;SOR=0.818;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:247,0,227
1	19609204	rs116787495	G	A	1767.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.121;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.737;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-0.125;SB=-8.300e+02;SOR=0.815;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,67:112:99:1796,0,1123
1	19609254	rs1738025	T	C	3900.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7297;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-2.538e+03;SOR=0.724;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3929,283,0
1	19610598	rs116050237	A	G	574.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.434;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=1.236;SB=-3.320e+02;SOR=0.420;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:603,0,286
1	19610995	rs114675589	T	A	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.860;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=0.453;SB=0.00;SOR=1.179;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:363,0,215
1	19610999	rs116582396	C	A	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=0.537;SB=0.00;SOR=1.061;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:18:99:340,0,229
1	19611006	rs114307705	C	A	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.070;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=0.498;SB=0.00;SOR=1.179;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:370,0,234
1	19611241	rs1738023	T	C	1227.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-5.730e+02;SOR=1.121;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:93:1256,93,0
1	19611376	.	A	AG	199.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.27;RPA=3,4;RU=G;ReadPosRankSum=-0.309;SB=-3.500e+01;SOR=0.693;STR;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:237,0,226
1	19611469	rs114086292	G	T	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=-0.179;SB=-4.176e+01;SOR=0.399;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:238,0,121
1	19611759	rs79752186	A	G	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.279;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=0.952;SB=-3.400e+01;SOR=1.061;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:354,0,234
1	19611760	rs76725077	A	G	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.608;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=0.909;SB=-3.400e+01;SOR=1.061;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:353,0,240
1	19614928	rs117022236	A	G	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.586;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-0.757;SB=-2.140e+02;SOR=0.853;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:409,0,228
1	19615042	rs118060916	G	A	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.805;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=-0.400;SB=-1.340e+02;SOR=0.412;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:206,0,311
1	19634940	rs74058542	C	G	611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.092;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=8.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-1.992;SB=-3.380e+02;SOR=0.175;VQSLOD=6.24;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:35,22:57:99:640,0,1257
1	19634964	rs859208	C	G	691.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.550;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.856;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-2.326;SB=-3.040e+02;SOR=0.328;VQSLOD=7.02;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:39,25:64:99:720,0,1345
1	19635195	rs72955249	C	A	921.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.892;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.934;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-0.341;SB=-3.140e+02;SOR=0.487;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,37:94:99:950,0,1575
1	19635213	rs60823204	T	A	766.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.556;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.058;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.468;SB=-2.480e+02;SOR=0.456;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,30:76:99:795,0,1292
1	19775566	rs1546264	G	A	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=5.653;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.22;ReadPosRankSum=-2.365;SB=-6.400e+01;SOR=0.088;VQSLOD=6.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:151,0,360
1	19923313	rs4912130	T	A	583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-2.001e+02;SOR=1.609;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:612,45,0
1	19935118	.	T	TA	840.73	PASS	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.03;RPA=7,8;RU=A;SB=-1.561e+02;SOR=2.833;STR;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:29:84:878,84,0
1	19981791	rs2294630	A	G	627.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.149;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=6.842;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-1.439;SB=-2.320e+02;SOR=1.532;VQSLOD=6.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,25:64:99:656,0,1058
1	20020993	rs4370779	A	G	2410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.337e+03;SOR=1.068;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2439,184,0
1	20020994	rs4515815	C	T	2417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-1.270e+03;SOR=1.068;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2446,181,0
1	20027034	rs71704175	ATCT	A	1195.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;RPA=2,1;RU=TCT;SB=0.00;SOR=6.184;STR;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:1233,63,0
1	20066178	rs11802745	C	G	165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=1.398;SB=0.00;SOR=0.399;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:194,0,314
1	20097611	rs1266436	G	A	443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.21;SB=0.00;SOR=5.136;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:472,36,0
1	20140973	rs35541730	G	T	786.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.358;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.988;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=0.497;SB=-4.620e+02;SOR=0.538;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,32:60:99:815,0,749
1	20141283	rs1541184	C	T	632.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.936;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=5.972;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.957;SB=-3.570e+02;SOR=0.543;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:661,0,466
1	20141528	rs1541185	C	T	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.058;SB=-9.500e+01;SOR=0.818;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:302,0,371
1	20216860	rs10799593	G	A	588.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.670;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.405;SB=-1.580e+02;SOR=1.593;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,23:47:99:617,0,561
1	20246876	rs61729970	C	T	909.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.738;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-1.302;SB=-2.860e+02;SOR=0.608;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,32:59:99:938,0,735
1	20248646	rs1108972	G	A	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.162;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=-0.116;SB=0.00;SOR=1.127;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:419,0,225
1	20248651	rs1108973	A	G	405.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.162;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-0.077;SB=0.00;SOR=1.127;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:434,0,239
1	20248709	rs1108974	A	G	766.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.837;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-1.061;SB=-2.050e+02;SOR=1.485;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,28:51:99:795,0,581
1	20304962	rs2236771	C	G	724.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.273;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-0.265;SB=-4.140e+02;SOR=0.428;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,30:58:99:753,0,775
1	20305065	rs10732279	C	T	2479.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-1.134e+03;SOR=1.134;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2508,193,0
1	20395401	rs11573185	C	A	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.992;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.088;SB=-1.010e+02;SOR=0.264;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:367,0,494
1	20395587	rs2148911	G	A	1099.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.917;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.579;SB=-6.980e+02;SOR=0.518;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,42:72:99:1128,0,708
1	20395759	rs5772881	CA	C	161.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;DB;DP=28;ExcessHet=3.0103;FS=5.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.47;RPA=6,5;RU=A;ReadPosRankSum=0.170;SB=-2.657e-01;SOR=2.760;STR;VQSLOD=6.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,9:28:99:199,0,460
1	20411234	rs2020886	T	A	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=-0.748;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-0.021;SB=-3.200e+01;SOR=0.752;VQSLOD=3.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,12:30:99:343,0,537
1	20411300	rs2020883	GT	G	732.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=0.957;POSITIVE_TRAIN_SITE;QD=11.27;RPA=9,8;RU=T;ReadPosRankSum=-1.395;SB=-2.230e+02;SOR=0.618;STR;VQSLOD=2.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,35:65:99:770,0,735
1	20411332	rs2020887	C	T	1015.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.378;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-0.247;SB=-5.180e+02;SOR=0.710;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,43:96:99:1044,0,1501
1	20442054	rs584367	T	C	866.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.654;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=4.667;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.017;SB=-4.180e+02;SOR=1.025;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,32:71:99:895,0,1018
1	20442691	rs3736979	C	T	476.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.768;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=14.555;HaplotypeScore=2.7354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=0.392;SB=-4.764e+00;SOR=3.180;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,16:46:99:505,0,796
1	20499168	rs2301475	T	C	567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.913;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.805;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.511;SB=-1.420e+02;SOR=0.250;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:596,0,580
1	20501442	rs10916718	T	C	835.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.378;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.680;SB=-3.840e+02;SOR=1.044;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,32:66:99:864,0,877
1	20637374	rs10916761	T	C	349.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-7.797e+01;SOR=2.494;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:378,27,0
1	20649814	rs4655194	T	C	1579.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-4.910e+02;SOR=1.958;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1608,120,0
1	20657352	rs2072753	T	C	5341.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-2.773e+03;SOR=1.212;VQSLOD=4.24;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,173:173:99:5370,388,0
1	20664128	rs57312184	T	C	1680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;SB=-7.780e+02;SOR=1.112;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1709,126,0
1	20671833	rs10799629	C	A	2674.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-1.314e+03;SOR=1.233;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2703,202,0
1	20676932	rs179471	T	A	663.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=0.00;SOR=5.892;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:692,54,0
1	20680760	rs230180	A	G	1800.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-1.068e+03;SOR=0.765;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1829,135,0
1	20829458	rs77808593	C	A	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-2.100;SB=0.00;SOR=0.693;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:162,0,173
1	20829560	rs2641114	G	A	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.544;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.744;SB=-1.020e+02;SOR=0.693;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:419,0,326
1	20846736	rs1815542	G	A	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.61;ReadPosRankSum=-0.103;SB=-1.030e+02;SOR=0.735;VQSLOD=9.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,7:16:99:134,0,218
1	20846826	.	C	T	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-1.693;SB=-4.076e+01;SOR=0.307;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:178,0,121
1	20915589	rs3215400	TC	T	587.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;RPA=3,2;RU=C;SB=-1.693e+02;SOR=2.179;STR;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:625,51,0
1	20915813	rs12059454	G	A	409.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-7.397e+01;SOR=2.303;VQSLOD=4.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:438,33,0
1	20931601	rs375093405	T	TATTC	793.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.04;RPA=4,5;RU=ATTC;ReadPosRankSum=1.202;SB=-2.970e+02;SOR=0.527;STR;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:45:99:831,0,1105
1	20940258	rs488991	T	A	2859.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.1623;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-1.263e+03;SOR=1.445;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2888,217,0
1	20940463	rs3738130	T	C	628.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.332;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=1.496;SB=-6.700e+01;SOR=0.706;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:657,0,833
1	20944889	.	G	A	1005.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;DP=86;Dels=0.00;ExcessHet=3.0103;FS=3.155;HaplotypeScore=2.7258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-0.978;SB=-3.190e+02;SOR=1.163;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,38:86:99:1034,0,1262
1	20944909	.	G	A	1076.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.752;SB=-3.550e+02;SOR=1.041;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,43:99:99:1105,0,1416
1	20944922	rs61781970	C	T	1103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=6.451;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=2.261;SB=-3.970e+02;SOR=1.312;VQSLOD=5.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:60,43:103:99:1132,0,1512
1	20945055	rs1048977	C	T	1144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.104;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=1.368;SB=-4.640e+02;SOR=0.437;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,41:77:99:1173,0,1053
1	20964328	rs2298298	A	G	448.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-8.197e+01;SOR=3.126;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:477,39,0
1	20964789	rs12408590	A	T	549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-1.603e+02;SOR=2.303;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:578,42,0
1	20972048	rs3131713	G	A	1094.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.1307;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-3.370e+02;SOR=2.115;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1123,84,0
1	20972111	rs3738136	G	A	714.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.425;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=6.333;HaplotypeScore=7.8227;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-0.247;SB=-4.120e+02;SOR=0.193;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,29:52:99:743,0,583
1	20976759	rs540038	C	T	491.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-1.931e+02;SOR=1.739;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:520,39,0
1	20977000	rs1043424	A	C	3260.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-1.684e+03;SOR=1.059;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3289,238,0
1	20977221	rs686658	A	T	1621.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-3.260e+02;SOR=3.033;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1650,123,0
1	20978832	rs6893	T	C	1265.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-2.471e+02;SOR=3.026;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1294,96,0
1	20979573	rs36110575	C	T	285.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.572;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=-1.561;SB=0.00;SOR=1.061;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:314,0,237
1	20979580	rs12410193	T	G	582.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=0.00;SOR=5.549;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:611,45,0
1	20981806	rs592851	G	A	400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.63;SB=-1.115e+02;SOR=2.303;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:429,33,0
1	20982151	rs3738140	G	A	1232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=5.283;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-0.403;SB=-4.740e+02;SOR=1.247;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,44:92:99:1261,0,1326
1	20982405	rs3738141	G	A	489.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.715;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.503;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.000;SB=-2.450e+02;SOR=0.330;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,17:31:99:518,0,446
1	20982631	rs4704	G	A	1441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-1.027;SB=-9.100e+02;SOR=0.752;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,59:106:99:1470,0,1261
1	20987873	rs537816	G	C	1203.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3117;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.39;SB=-5.990e+02;SOR=1.002;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1232,90,0
1	20990905	rs10799659	G	A	269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=0.552;SB=0.00;SOR=1.473;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:298,0,141
1	20992819	rs631357	G	C	704.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.128;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.543;SB=-3.620e+02;SOR=0.580;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,29:66:99:733,0,1028
1	20992933	rs573268	G	C	548.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;SB=-4.176e+01;SOR=4.174;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:577,42,0
1	20996757	rs1570663	T	G	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=0.000;SB=0.00;SOR=1.085;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:93:220,0,93
1	20998508	rs34232864	C	T	893.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.874;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-0.624;SB=-4.860e+02;SOR=0.561;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,33:76:99:922,0,1054
1	21016487	rs489334	C	T	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-0.453;SB=-1.310e+02;SOR=1.270;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:262,0,138
1	21016906	rs493018	G	T	199.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.233;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.132;SB=-9.732e-01;SOR=2.303;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:228,0,243
1	21024901	rs522496	C	T	563.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.943;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=-0.186;SB=-1.822e+02;SOR=0.836;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,21:25:69:592,0,69
1	21030902	rs900039	G	T	549.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.803;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.494;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=-0.408;SB=-1.600e+02;SOR=0.446;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,22:40:99:578,0,585
1	21031042	rs2296225	T	C	1269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=3.320;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=1.062;SB=-6.490e+02;SOR=0.448;VQSLOD=7.24;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,50:131:99:1298,0,2290
1	21040079	rs10799661	C	A	2029.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7351;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.42;ReadPosRankSum=1.281;SB=-1.059e+03;SOR=0.405;VQSLOD=4.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,68:69:99:2058,150,0
1	21040088	rs41307866	C	T	1048.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-0.088;SB=-6.020e+02;SOR=0.606;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,43:66:99:1077,0,602
1	21042094	rs12046928	G	A	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=0.284;SB=-3.530e+02;SOR=0.569;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,22:50:99:490,0,717
1	21043926	rs604645	T	C	400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.91;SB=-4.176e+01;SOR=3.442;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:429,33,0
1	21044161	rs601329	A	G	907.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-4.280e+02;SOR=1.402;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:66:936,66,0
1	21044219	rs601392	A	C	644.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.00;SB=-4.276e+01;SOR=4.407;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:673,51,0
1	21049518	rs12403580	C	T	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.21;ReadPosRankSum=0.000;SB=-3.100e+01;SOR=0.512;VQSLOD=9.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,6:18:99:122,0,341
1	21049848	rs74840517	G	A	126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.944;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=1.158;SB=-4.076e+01;SOR=0.120;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:155,0,201
1	21050270	rs3753047	C	T	238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.24;ReadPosRankSum=1.217;SB=-1.300e+02;SOR=0.483;VQSLOD=8.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,12:33:99:267,0,603
1	21050958	rs592060	C	T	1656.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-7.590e+02;SOR=1.094;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1685,126,0
1	21053887	rs10916853	C	T	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=-0.349;SB=-6.097e+01;SOR=0.368;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:90:266,0,90
1	21071967	rs2274119	C	T	688.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.147;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-0.527;SB=-4.360e+02;SOR=0.368;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,33:67:99:717,0,1010
1	21097727	rs3736880	G	A	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=1.111;SB=0.00;SOR=1.609;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:92:240,0,92
1	21099846	rs589755	A	G	706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.18;ReadPosRankSum=0.426;SB=0.00;SOR=2.303;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,20:26:99:735,0,154
1	21143762	rs35569463	T	A	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.140;HaplotypeScore=7.6596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.88;ReadPosRankSum=1.736;SB=-9.732e-01;SOR=2.303;VQSLOD=4.91;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,8:18:99:224,0,309
1	21143770	rs376814165	TA	T	175.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;RPA=9,8;RU=A;ReadPosRankSum=-0.041;SB=-2.378e+01;SOR=0.804;STR;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:20:51:213,0,51
1	21143774	rs12126757	A	T	230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.5229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.165;SB=-3.300e+01;SOR=0.693;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:259,0,332
1	21143782	rs72224471	A	AAT	462.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=0.283;SB=-4.900e+01;SOR=0.551;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:500,0,522
1	21167404	rs2230573	A	G	1352.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-4.760e+02;SOR=1.900;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1381,99,0
1	21174429	rs17449243	T	C	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.429;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-0.730;SB=-3.200e+01;SOR=0.776;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,13:32:99:349,0,586
1	21175855	rs7525082	C	A	1203.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.39;SB=-7.497e+01;SOR=4.863;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1232,99,0
1	21179969	rs7542882	G	A	1369.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-4.580e+02;SOR=1.954;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1398,105,0
1	21180181	rs2305463	C	T	688.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.481;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.66;ReadPosRankSum=-0.838;SB=-1.730e+02;SOR=1.075;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,24:39:99:717,0,372
1	21180250	rs7543140	G	A	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.879;SB=-3.301e+01;SOR=0.976;VQSLOD=10.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:279,0,237
1	21181595	rs1463273	A	G	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=9.249;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.531;SB=-1.417e+01;SOR=2.732;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,16:42:99:483,0,728
1	21188703	rs10916885	A	T	579.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;DB;DP=55;Dels=0.02;ExcessHet=3.0103;FS=7.785;HaplotypeScore=5.8796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-0.132;SB=-2.630e+02;SOR=0.852;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,22:54:99:608,0,835
1	21188871	rs17409373	C	A	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.443;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.304;SB=-6.800e+01;SOR=0.495;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:230,0,299
1	21191416	rs3816454	T	G	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=6.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-0.124;SB=-1.245e+02;SOR=0.045;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:214,0,195
1	21219050	rs6685306	C	T	230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.079;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=7.225;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=1.750;SB=-8.097e+01;SOR=0.048;VQSLOD=6.31;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,9:20:99:259,0,396
1	21220375	rs2275468	T	G	230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=-0.308;SB=0.00;SOR=1.609;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:86:259,0,86
1	21295864	rs2271115	C	T	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.992;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=-0.738;SB=-6.800e+01;SOR=0.298;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:332,0,496
1	21323854	rs75245116	GA	G	59.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.97;RPA=10,9;RU=A;ReadPosRankSum=-0.700;SB=0.00;SOR=0.693;STR;VQSLOD=7.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,5:10:97:97,0,99
1	21325360	rs885363	C	A	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=-0.743;SB=-1.030e+02;SOR=1.445;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,14:20:99:394,0,117
1	21327637	rs1395508	C	T	1769.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-9.090e+02;SOR=1.061;VQSLOD=4.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1798,132,0
1	21377314	rs6426663	C	T	1405.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.50;SB=-2.281e+02;SOR=3.202;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1434,105,0
1	21548068	rs2076281	A	G	639.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.851;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=3.594;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=1.092;SB=-5.800e+01;SOR=1.705;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,21:48:99:668,0,678
1	21553933	rs6665399	T	C	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.525;SB=-1.765e+00;SOR=2.179;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:209,0,135
1	21554319	rs6426676	A	G	667.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-3.250e+02;SOR=1.230;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:696,51,0
1	21625145	rs10916958	T	C	800.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.382;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.788;SB=-3.040e+02;SOR=0.648;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,30:67:99:829,0,998
1	21738020	rs2316499	A	G	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=1.546;SB=-1.250e+02;SOR=0.627;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:236,0,355
1	21754283	rs6426689	A	C	1261.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-6.230e+02;SOR=1.022;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1290,96,0
1	21755347	rs41310392	C	T	76.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.57;MQ0=2;MQRankSum=-1.795;POSITIVE_TRAIN_SITE;QD=4.26;ReadPosRankSum=1.520;SB=-5.300e+01;SOR=1.329;VQSLOD=2.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,8:18:99:105,0,316
1	21756069	rs7532750	G	A	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.42;MQ0=0;MQRankSum=-0.728;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=0.728;SB=-7.797e+01;SOR=0.473;VQSLOD=3.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:10:56:230,0,56
1	21795388	rs1827293	A	G	1030.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-5.720e+02;SOR=1.148;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:75:1059,75,0
1	21797996	rs2004380	G	A	625.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-1.115e+02;SOR=3.056;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:654,51,0
1	21799823	rs1971328	A	G	1156.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-1.225e+02;SOR=4.047;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:87:1185,87,0
1	21801346	rs7531217	G	A	335.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-7.297e+01;SOR=2.494;VQSLOD=5.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:27:364,27,0
1	21804815	rs7535654	T	G	3851.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-1.602e+03;SOR=1.609;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3880,280,0
1	21805696	rs367596943	C	A	799.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.654;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.32;ReadPosRankSum=0.930;SB=-1.020e+02;SOR=1.055;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,28:49:99:828,0,682
1	21805730	rs2316504	A	G	2484.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.046e+03;SOR=1.493;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2513,181,0
1	21805978	rs4654948	G	A	930.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.64;SB=-4.076e+01;SOR=5.058;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:959,72,0
1	21809524	rs71512993	A	C	318.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=28.98;SB=0.00;SOR=4.977;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:347,27,0
1	21880818	rs71774981	C	CATAT	427.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQ0=0;MQRankSum=1.381;POSITIVE_TRAIN_SITE;QD=11.88;RPA=7,9;RU=AT;ReadPosRankSum=-0.553;SB=-5.455e+00;SOR=1.022;STR;VQSLOD=3.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,10:36:99:465,0,916
1	21887290	rs1767430	C	A	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.112;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.72;ReadPosRankSum=-1.371;SB=-2.601e+01;SOR=0.330;VQSLOD=9.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,10:26:99:229,0,564
1	21889635	rs1780316	T	C	1263.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-7.330e+02;SOR=0.741;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1292,96,0
1	21890386	rs1256335	G	A	166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;VQSLOD=10.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:195,0,209
1	21890464	rs1767428	A	G	2320.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.46;SB=-4.176e+01;SOR=6.736;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2349,175,0
1	21894735	rs3200254	T	C	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.646;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-0.183;SB=-2.050e+02;SOR=0.836;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:42:99:541,0,557
1	21894785	rs3738098	G	T	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.815;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.809;SB=-1.040e+02;SOR=0.382;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:307,0,352
1	21894816	rs3738097	T	C	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=0.003;SB=0.00;SOR=1.179;VQSLOD=10.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:289,0,161
1	21896767	rs1256328	C	T	834.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.094;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=10.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-1.282;SB=-3.640e+02;SOR=0.907;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,30:66:99:863,0,919
1	21896863	rs375027534	A	G	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.140;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.641;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-0.200;SB=-1.990e+02;SOR=1.276;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,20:46:99:521,0,678
1	21896887	rs2275377	G	T	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.260;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.432;SB=-1.500e+02;SOR=0.927;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,18:42:99:468,0,669
1	21896918	rs2275376	G	A	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.464;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.651;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.923;SB=-1.360e+02;SOR=0.330;VQSLOD=7.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,13:32:99:340,0,573
1	21896925	rs2275375	C	T	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.579;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.84;ReadPosRankSum=0.200;SB=-1.300e+02;SOR=0.387;VQSLOD=7.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,14:33:99:320,0,538
1	21900112	rs74063110	G	A	906.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.942;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=-0.383;SB=-1.820e+02;SOR=0.614;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,33:56:99:935,0,621
1	21900146	rs75829132	C	G	1076.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.215;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=0.533;SB=-3.450e+02;SOR=0.602;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,39:69:99:1105,0,861
1	21900151	rs74063111	T	C	1079.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=1.139;SB=-3.750e+02;SOR=0.655;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,40:74:99:1108,0,946
1	21900171	rs3200255	A	G	1278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.158;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.750;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.745;SB=-6.060e+02;SOR=0.498;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,53:98:99:1307,0,1197
1	21900396	rs2275372	A	C	265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.356;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=7.681;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.21;ReadPosRankSum=-0.400;SB=-2.402e+01;SOR=2.223;VQSLOD=5.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,12:51:99:294,0,1168
1	21900397	rs2275371	G	T	255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=7.681;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.02;ReadPosRankSum=-0.411;SB=-2.501e+01;SOR=2.223;VQSLOD=5.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,12:51:99:284,0,1159
1	21900420	rs2275370	A	G	193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.334;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.40;ReadPosRankSum=0.073;SB=-7.901e-01;SOR=2.140;VQSLOD=6.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,9:44:99:222,0,985
1	21900444	rs2275369	A	G	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.745;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=8.255;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.40;ReadPosRankSum=0.604;SB=-1.091e-03;SOR=3.240;VQSLOD=5.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,7:39:99:161,0,828
1	21902950	rs1780329	C	A	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.236;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=0.745;SB=-3.400e+01;SOR=0.324;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,13:34:99:368,0,725
1	21903180	rs4654760	C	T	1140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.296;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.797;SB=-3.740e+02;SOR=0.551;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,43:84:99:1169,0,1027
1	21904131	rs34605986	T	C	1258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.160;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=4.615;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=1.294;SB=-2.910e+02;SOR=1.309;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,45:95:99:1287,0,1290
1	21904267	rs1697406	A	G	415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=-4.276e+01;SOR=3.611;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:444,33,0
1	21928344	rs2275366	C	G	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.19;ReadPosRankSum=-1.199;SB=-1.765e+00;SOR=0.693;VQSLOD=8.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:99:132,0,420
1	21929260	rs829368	A	G	1060.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-6.480e+02;SOR=0.927;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:78:1089,78,0
1	21929456	rs3215988	GC	G	135.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;RPA=8,7;RU=C;ReadPosRankSum=0.705;SB=-3.001e+01;SOR=0.693;STR;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:15:99:173,0,181
1	21932530	rs1767443	C	A	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=0.517;SB=-3.600e+01;SOR=1.609;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:256,0,99
1	21934693	rs72660316	T	C	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.407;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.619;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=-1.696;SB=-2.200e+02;SOR=0.317;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,18:29:99:511,0,300
1	21935467	rs12130950	G	A	883.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.942;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=4.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-1.141;SB=-2.770e+02;SOR=1.348;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,35:69:99:912,0,902
1	21935884	rs34097078	GA	G	204.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;DB;DP=20;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;RPA=14,13;RU=A;ReadPosRankSum=-0.436;SB=-5.397e+01;SOR=0.223;STR;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:242,0,131
1	21937807	rs1256281	C	G	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.01;SB=0.00;SOR=4.804;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
1	21939741	rs1256282	G	C	2062.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.96;SB=-4.450e+02;SOR=2.872;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2091,154,0
1	21943820	rs2275360	G	A	706.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-3.930e+02;SOR=1.051;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:735,54,0
1	21945530	rs77539762	C	T	726.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.371;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=0.815;SB=-3.560e+02;SOR=0.955;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,29:69:99:755,0,1046
1	21946396	rs12134357	T	C	266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.625;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.572;SB=-1.765e+00;SOR=1.609;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:295,0,320
1	21946415	rs1681255	G	A	317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.302;SB=-9.732e-01;SOR=2.160;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:346,0,372
1	21953138	rs829411	A	G	84.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.71;ReadPosRankSum=0.000;SB=0.00;SOR=0.330;VQSLOD=10.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:113,0,241
1	21953436	rs829412	A	G	1897.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.563;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.764;SB=-1.088e+03;SOR=0.665;VQSLOD=7.88;culprit=DP	GT:AD:DP:GQ:PL	0/1:73,82:155:99:1926,0,2028
1	21961339	rs10799706	A	T	1303.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-3.370e+02;SOR=2.476;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1332,99,0
1	22016678	.	TA	T	98.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;RPA=14,13;RU=A;ReadPosRankSum=-0.172;SB=0.00;SOR=1.112;STR;VQSLOD=9.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,9:18:99:136,0,111
1	22016719	rs1618590	T	C	425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=0.00;SOR=4.977;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:454,33,0
1	22028111	rs6689260	C	A	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.902;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.624;SB=-1.700e+02;SOR=0.693;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:282,0,325
1	22032472	.	A	AT	449.73	PASS	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.59;RPA=2,3;RU=T;SB=-2.321e+02;SOR=0.836;STR;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:487,39,0
1	22050264	rs900488	C	G	400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=0.00;SOR=4.977;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:429,33,0
1	22139141	rs34297508	C	T	1011.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.727;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.492;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=2.219;SB=-2.800e+02;SOR=1.182;VQSLOD=7.25;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:33,37:70:99:1040,0,1025
1	22139300	rs71636988	G	A	62.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.71;ReadPosRankSum=1.200;SB=0.00;SOR=0.180;VQSLOD=9.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:91:91,0,282
1	22141206	rs10917051	A	C	1193.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-5.950e+02;SOR=0.927;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1222,90,0
1	22147764	rs6684152	A	G	515.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.739;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.191;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.532;SB=-1.100e+02;SOR=0.201;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,19:37:99:544,0,571
1	22148164	rs6695528	G	A	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.172;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.993;HaplotypeScore=1.8311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.544;SB=-1.360e+02;SOR=0.074;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:319,0,373
1	22148791	.	T	G	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.040;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.41;ReadPosRankSum=0.476;SB=-2.640e+02;SOR=0.723;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:403,0,439
1	22149935	rs897467	T	C	1373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-6.290e+02;SOR=1.127;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1402,105,0
1	22150120	rs3736360	C	T	652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.676;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=1.032;SB=-4.860e+02;SOR=0.631;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,31:61:99:681,0,902
1	22150160	rs3736358	G	T	544.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.762;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=0.280;SB=-3.790e+02;SOR=0.765;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:573,0,631
1	22150257	rs3736357	C	T	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=0.434;SB=0.00;SOR=1.244;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:334,0,186
1	22154845	rs2228347	A	G	1428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.202;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=8.279;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-1.498;SB=-6.550e+02;SOR=1.357;VQSLOD=4.37;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,55:126:99:1457,0,1733
1	22154987	rs10917052	G	A	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.150;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.781;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-2.551;SB=-1.420e+02;SOR=0.113;VQSLOD=7.51;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,16:31:99:475,0,523
1	22155841	rs12042189	T	C	413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-1.086;SB=-1.520e+02;SOR=0.493;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,17:41:99:442,0,695
1	22155853	rs12023794	C	T	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.832;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.350;SB=-1.610e+02;SOR=0.668;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,17:44:99:472,0,752
1	22157689	rs3736355	G	A	1203.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-5.550e+02;SOR=0.902;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1232,93,0
1	22158120	rs2270701	G	T	649.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.206;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.489;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-0.927;SB=-4.000e+02;SOR=0.301;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,25:46:99:678,0,586
1	22159008	rs2229487	C	A	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.815;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.269;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=0.288;SB=-1.210e+02;SOR=1.460;VQSLOD=7.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,13:32:99:308,0,487
1	22160111	rs17459139	C	T	348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.157;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=9.412;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-0.438;SB=-2.320e+02;SOR=0.076;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:377,0,393
1	22160148	rs7547731	C	T	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-0.455;SB=-9.900e+01;SOR=0.631;VQSLOD=10.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:231,0,362
1	22161275	rs2229492	G	A	1273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.850;SB=-6.210e+02;SOR=0.651;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,52:116:99:1302,0,1661
1	22161614	rs150994577	TACTC	T	546.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=1.100;QD=20.50;RPA=2,1;RU=ACTC;ReadPosRankSum=0.151;SB=-5.500e+01;SOR=1.329;STR;VQSLOD=2.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:22:99:584,0,608
1	22165901	rs2291826	A	G	796.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.316;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=2.931;SB=-4.890e+02;SOR=0.732;VQSLOD=7.75;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:43,33:76:99:825,0,1131
1	22165987	rs2291827	G	A	695.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.999;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.437;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-1.501;SB=-2.450e+02;SOR=1.167;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,29:68:99:724,0,1042
1	22167988	rs2270697	G	T	817.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.085;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.882;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=-0.311;SB=-3.690e+02;SOR=0.964;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,31:82:99:846,0,1405
1	22168216	rs7556412	C	T	741.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-2.351e+02;SOR=2.030;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:24:57:770,57,0
1	22168310	rs12043008	A	G	154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.74;ReadPosRankSum=-0.714;SB=-5.500e+01;SOR=1.561;VQSLOD=7.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:20:99:183,0,336
1	22173762	rs12023884	G	A	514.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=1.497;SB=-2.080e+02;SOR=0.596;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,20:45:99:543,0,749
1	22174426	rs2290501	T	G	1145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.982;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=2.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-0.879;SB=-6.550e+02;SOR=0.726;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,42:83:99:1174,0,1192
1	22174600	rs3767138	A	G	1609.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-4.330e+02;SOR=2.348;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1638,120,0
1	22176831	rs2290500	C	T	381.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.000;SB=-1.180e+02;SOR=0.693;VQSLOD=10.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,13:32:99:410,0,577
1	22177119	rs61777200	A	G	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.80;ReadPosRankSum=0.980;SB=-1.765e+00;SOR=0.693;VQSLOD=9.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:92:92,0,243
1	22180244	rs372328840	AAAAAT	A	238.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.55;RPA=9,8;RU=AAAAT;ReadPosRankSum=0.396;SB=0.00;SOR=0.582;STR;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:16:99:276,0,471
1	22180254	.	T	A	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-0.232;SB=0.00;SOR=0.540;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:280,0,406
1	22180548	rs12117402	T	C	1650.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.39;SB=-7.520e+02;SOR=1.179;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1679,123,0
1	22183471	rs12024579	A	C	1449.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.00;SB=-7.560e+02;SOR=1.270;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1478,105,0
1	22183739	rs2305562	A	G	1413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-0.537;SB=-7.270e+02;SOR=0.613;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1442,0,1113
1	22186234	rs10917056	A	G	1556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-8.240e+02;SOR=0.976;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1585,120,0
1	22190826	.	G	GC	161.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.17;RPA=4,5;RU=C;ReadPosRankSum=1.693;SB=-4.176e+01;SOR=0.307;STR;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:11:99:199,0,119
1	22191454	rs897471	G	A	347.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.170;SB=-1.670e+02;SOR=1.140;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:376,0,375
1	22199081	rs2501266	A	T	386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;SB=-1.653e+02;SOR=1.765;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:415,30,0
1	22199245	.	C	T	551.77	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.49;SB=-1.155e+02;SOR=2.584;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:580,42,0
1	22199821	rs2454290	G	A	1853.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-5.930e+02;SOR=2.024;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1882,141,0
1	22200067	rs2247741	A	G	1268.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-3.130e+02;SOR=2.613;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1297,96,0
1	22200082	rs2445136	T	C	1038.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-2.471e+02;SOR=2.833;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1067,84,0
1	22201438	rs41307806	C	T	1178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=3.319;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-0.146;SB=-3.850e+02;SOR=1.263;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,45:80:99:1207,0,989
1	22201588	.	C	T	699.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.504;DP=63;Dels=0.00;ExcessHet=3.0103;FS=4.031;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.11;ReadPosRankSum=2.682;SB=-3.030e+02;SOR=0.298;VQSLOD=5.47;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,27:63:99:728,0,1041
1	22202109	rs2501265	C	T	791.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.21;SB=0.00;SOR=6.091;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:820,60,0
1	22203259	rs2454295	A	G	719.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-3.976e+01;SOR=4.514;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:748,57,0
1	22205408	rs2454294	T	C	434.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-1.443e+02;SOR=1.445;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:463,36,0
1	22206649	rs989994	T	C	2952.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-1.762e+03;SOR=0.826;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2981,214,0
1	22206942	rs1874793	G	A	1260.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-5.660e+02;SOR=1.121;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:96:1289,96,0
1	22207235	rs1874792	T	C	974.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.85;SB=-5.820e+02;SOR=0.869;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:72:1003,72,0
1	22207804	rs139046040	ACCCAGGGTGGCAG	A	2805.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.56;SB=-6.313e+02;SOR=2.303;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:2843,54,0
1	22211222	rs4654994	T	C	1979.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.69;SB=-1.032e+03;SOR=1.098;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2008,147,0
1	22214046	rs41307868	C	T	986.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.564;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=4.452;HaplotypeScore=3.3631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-0.111;SB=-5.320e+02;SOR=0.646;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,37:75:99:1015,0,1042
1	22216574	rs2254358	C	A	1021.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-5.140e+02;SOR=1.179;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1050,78,0
1	22216604	rs2254357	C	G	840.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-3.700e+02;SOR=1.302;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:869,63,0
1	22217108	rs2501260	G	A	1564.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.30;SB=-8.750e+02;SOR=0.952;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1593,117,0
1	22299656	rs4233282	T	G	1322.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-1.135e+02;SOR=3.797;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1351,99,0
1	22304712	rs10917088	A	G	941.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-1.643e+02;SOR=3.407;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:970,75,0
1	22310139	rs10733031	T	G	1094.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-1.215e+02;SOR=4.112;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1123,93,0
1	22310145	rs10733032	C	T	1226.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-1.583e+02;SOR=3.737;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:96:1255,96,0
1	22310262	rs10733033	G	C	2805.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-1.531e+03;SOR=0.992;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2834,211,0
1	22310411	rs28468423	A	G	1595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=2;POSITIVE_TRAIN_SITE;QD=30.69;SB=-5.160e+02;SOR=1.802;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,50:52:99:1624,126,0
1	22310413	rs7549398	A	G	1580.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=2;POSITIVE_TRAIN_SITE;QD=31.62;SB=-5.530e+02;SOR=1.708;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,48:50:99:1609,120,0
1	22310662	rs6426735	G	T	552.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.13;SB=-3.310e+02;SOR=1.085;VQSLOD=4.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:42:581,42,0
1	22310674	rs7538207	C	T	515.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.44;SB=-2.700e+02;SOR=1.085;VQSLOD=3.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:39:544,39,0
1	22310725	.	G	C	500.77	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-3.060e+02;SOR=1.127;VQSLOD=3.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,20:20:39:529,39,0
1	22313161	rs1803530	T	C	2411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-8.600e+02;SOR=1.966;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2440,190,0
1	22313197	rs34963341	C	A	1773.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=1;POSITIVE_TRAIN_SITE;QD=34.11;SB=-3.500e+02;SOR=2.746;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1802,132,0
1	22313646	rs72662492	G	A	322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.93;ReadPosRankSum=-1.026;SB=-3.377e+01;SOR=0.269;VQSLOD=8.24;culprit=SOR	GT:AD:DP:GQ:PL	0/1:8,10:18:99:351,0,225
1	22313646	rs56302995	GA	G	327.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.578;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.18;RPA=11,10;RU=A;ReadPosRankSum=-0.493;SB=-2.977e+01;SOR=2.093;STR;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,16:18:4:363,0,4
1	22329414	rs10917107	G	A	1058.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-6.510e+02;SOR=0.749;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1087,81,0
1	22333595	rs3820290	G	A	1346.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-4.980e+02;SOR=1.666;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1375,99,0
1	22336277	rs3820285	C	G	2825.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-1.579e+03;SOR=0.982;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2854,205,0
1	22336371	rs3806297	C	A	1326.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=-2.630e+02;SOR=2.554;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1355,99,0
1	22336810	.	C	CA	1176.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.202;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=0.373;POSITIVE_TRAIN_SITE;QD=24.01;RPA=9,10;RU=A;ReadPosRankSum=-0.932;SB=-1.321e+02;SOR=1.054;STR;VQSLOD=3.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,45:53:38:1214,38,0
1	22408106	rs2501282	G	A	3070.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-2.041e+03;SOR=0.752;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3099,223,0
1	22447148	rs12756110	G	C	394.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=0.00;SOR=5.136;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:423,36,0
1	22447645	rs67503051	C	CTG	2048.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;RPA=1,2;RU=TG;SB=-1.100e+02;SOR=5.084;STR;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:2086,117,0
1	22816262	rs1267005	T	C	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=0.325;SB=-4.276e+01;SOR=1.329;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,10:13:40:333,0,40
1	22827931	rs4655071	C	T	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.660;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.704;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=0.754;SB=-2.250e+02;SOR=0.330;VQSLOD=7.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,21:55:99:501,0,1052
1	22832743	rs209732	A	T	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.945;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.080;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=1.179;SB=-2.501e+01;SOR=1.581;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:343,0,463
1	22834693	rs28516648	A	C	356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.764;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=0.058;SB=-1.100e+02;SOR=0.160;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:385,0,372
1	22835677	rs209729	A	G	880.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.948;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.182;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.649;SB=-5.030e+02;SOR=0.418;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,31:61:99:909,0,724
1	22837849	rs209727	C	T	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.423;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.000;SB=-3.400e+01;SOR=0.770;VQSLOD=10.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:436,0,403
1	22846452	rs7551801	C	G	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.179;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.593;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-0.147;SB=-7.300e+01;SOR=0.169;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:304,0,490
1	22846709	rs209720	G	A	1630.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-5.520e+02;SOR=2.093;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1659,120,0
1	22852904	rs2281355	G	A	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.404;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.920;SB=-6.500e+01;SOR=0.791;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,15:34:99:465,0,591
1	22895998	rs2273099	T	A	611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=16.902;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=0.776;SB=-3.170e+02;SOR=0.348;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:640,0,834
1	22902772	rs56218493	C	T	1933.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.231;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=2.788;HaplotypeScore=1.8154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.301;SB=-9.780e+02;SOR=0.435;VQSLOD=6.35;culprit=DP	GT:AD:DP:GQ:PL	0/1:94,77:171:99:1962,0,2475
1	22912865	rs537426	A	G	159.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.000;SB=-4.276e+01;SOR=0.169;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:188,0,203
1	22913153	rs638058	T	C	1080.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.661;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=3.844;HaplotypeScore=1.5782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=-0.163;SB=-6.120e+02;SOR=1.101;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,45:94:99:1109,0,1302
1	22925292	rs664340	C	G	1523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-3.300e+02;SOR=2.786;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1552,123,0
1	22965438	rs172378	A	G	815.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.955;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-0.798;SB=-4.680e+02;SOR=0.544;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,30:63:99:844,0,1016
1	22985839	rs140338008	AGATG	A	295.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.16;RPA=12,11;RU=GATG;ReadPosRankSum=-0.880;SB=-6.376e+01;SOR=0.223;STR;VQSLOD=9.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,6:11:99:333,0,281
1	22987958	rs10580	A	G	1860.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-6.420e+02;SOR=1.781;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1889,135,0
1	23101688	rs1561624	T	G	2092.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9459;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-6.970e+02;SOR=1.981;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2121,154,0
1	23101733	.	T	C	532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;DP=79;Dels=0.00;ExcessHet=3.0103;FS=12.704;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.74;ReadPosRankSum=-0.144;SB=-2.390e+02;SOR=1.084;VQSLOD=4.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:55,24:79:99:561,0,1463
1	23219493	rs309472	T	C	3410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-2.192e+03;SOR=0.693;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3439,247,0
1	23289568	rs10799777	T	C	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.675;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.69;ReadPosRankSum=0.050;SB=-8.297e+01;SOR=0.204;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:329,0,189
1	23291582	rs4655138	G	A	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.713;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=0.538;SB=-1.350e+02;SOR=0.148;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:316,0,210
1	23330497	rs491139	G	A	69.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.616;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.81;ReadPosRankSum=0.817;SB=-5.600e+01;SOR=0.169;VQSLOD=6.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:98:98,0,224
1	23342362	rs681648	A	G	627.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.486;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.065;HaplotypeScore=1.4105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=0.045;SB=-4.440e+02;SOR=0.481;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,28:53:99:656,0,654
1	23380198	rs579785	A	G	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.735;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.09;ReadPosRankSum=0.413;SB=-1.765e+00;SOR=0.693;VQSLOD=9.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:99:190,0,447
1	23381795	rs33996438	A	AT	292.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=-0.717;SB=0.00;SOR=0.693;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:330,0,238
1	23382729	rs763310	A	G	55.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.58;ReadPosRankSum=0.308;SB=0.00;SOR=0.223;VQSLOD=9.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:84:84,0,237
1	23385826	rs79588010	CTT	C	961.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.449;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=0.812;SB=-3.570e+02;SOR=0.693;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:40:99:999,0,1042
1	23399932	rs967605	C	T	421.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.241;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=1.055;SB=-1.480e+02;SOR=0.763;VQSLOD=8.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,18:51:99:450,0,939
1	23405794	rs2072945	A	C	755.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.387;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=7.110;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=-0.967;SB=-2.310e+02;SOR=1.770;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:784,0,457
1	23418153	rs10799790	C	T	2295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.304;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=3.583;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=0.686;SB=-1.097e+03;SOR=0.997;VQSLOD=7.40;culprit=DP	GT:AD:DP:GQ:PL	0/1:83,87:170:99:2324,0,2286
1	23419261	rs477717	G	A	1513.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.909;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.683;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-1.542;SB=-6.900e+02;SOR=0.469;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,58:107:99:1542,0,1476
1	23419374	rs3765407	G	T	1033.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.497;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.859;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.320;SB=-5.480e+02;SOR=0.821;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,37:78:99:1062,0,1176
1	23419383	rs477830	C	T	1001.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.157;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.558;SB=-5.480e+02;SOR=0.611;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,35:76:99:1030,0,1173
1	23419855	rs1983965	T	C	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.648;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-0.122;SB=-3.370e+02;SOR=0.503;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,25:45:99:660,0,502
1	23519508	.	T	TA	212.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=16;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;RPA=12,13;RU=A;ReadPosRankSum=0.784;SB=-9.151e+01;SOR=0.184;STR;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:16:50:250,0,50
1	23519633	rs6300	A	G	627.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.141;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-1.298;SB=-3.140e+02;SOR=0.341;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,27:54:99:656,0,738
1	23664511	rs11586100	T	G	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-0.566;SB=0.00;SOR=0.368;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:159,0,281
1	23688933	rs2849028	A	G	2420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.457;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.594;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=0.000;SB=-1.460e+03;SOR=0.763;VQSLOD=7.56;culprit=DP	GT:AD:DP:GQ:PL	0/1:67,89:156:99:2449,0,1786
1	23693422	rs2849025	T	C	758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.836;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-0.614;SB=-3.070e+02;SOR=0.507;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,29:70:99:787,0,1164
1	23696152	rs665977	G	A	926.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=-0.530;SB=-2.850e+02;SOR=1.055;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,34:61:99:955,0,788
1	23710805	rs605468	A	G	628.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.435;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-0.342;SB=-4.210e+02;SOR=0.588;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,28:58:99:657,0,772
1	23713952	rs676363	T	G	478.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.437;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=1.789;SB=-2.050e+02;SOR=1.197;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,18:36:99:507,0,492
1	23720260	rs2486078	T	G	508.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.76;SB=-4.176e+01;SOR=3.912;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:537,39,0
1	23723935	rs7516962	G	A	189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.979;SB=-1.245e+02;SOR=0.061;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:218,0,180
1	23724514	rs12568007	C	T	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.246;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-0.240;SB=-1.040e+02;SOR=0.446;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:411,0,423
1	23735241	rs1198423	G	T	1767.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-1.114e+03;SOR=0.831;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1796,129,0
1	23743581	rs2156087	C	G	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=1.588;SB=-2.050e+02;SOR=0.643;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,25:44:99:660,0,557
1	23755513	rs1198430	T	C	1288.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;SB=-5.610e+02;SOR=1.765;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1317,99,0
1	23756695	rs1198433	A	G	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-1.501;SB=-1.765e+00;SOR=1.112;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:130,0,209
1	23758134	rs1198434	A	G	1183.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-6.190e+02;SOR=1.022;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:87:1212,87,0
1	23762679	rs12401753	A	G	123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.591;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.51;ReadPosRankSum=1.806;SB=-1.765e+00;SOR=0.551;VQSLOD=7.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:99:152,0,447
1	23765472	rs1767148	A	G	754.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-3.080e+02;SOR=1.519;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:783,57,0
1	23769359	rs946269	T	C	129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=1.063;SB=-3.500e+01;SOR=0.527;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:158,0,175
1	23782297	rs61778880	C	T	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.339;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-0.544;SB=0.00;SOR=0.340;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:192,0,358
1	23802754	rs12136546	G	A	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.859;SB=0.00;SOR=0.582;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:234,0,247
1	23843110	rs2075994	C	T	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.564;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=0.000;SB=-1.310e+02;SOR=0.412;VQSLOD=7.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,13:30:99:309,0,459
1	23845742	rs3218175	C	T	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.565;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-0.458;SB=0.00;SOR=0.610;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:319,0,379
1	23847709	rs2075996	C	G	151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.07;ReadPosRankSum=-1.911;SB=-5.800e+01;SOR=0.527;VQSLOD=8.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,6:25:99:180,0,520
1	23885230	rs2067054	C	G	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-0.899;SB=-8.297e+01;SOR=0.086;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:273,0,314
1	23885498	rs11574	T	C	3338.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-1.916e+03;SOR=0.981;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3367,253,0
1	23885599	rs2067053	T	C	994.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.799;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=7.216;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=1.438;SB=-3.710e+02;SOR=1.583;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,34:61:99:1023,0,722
1	23886073	rs2742946	T	C	337.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=0.00;SOR=4.804;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:366,30,0
1	23908221	.	C	CTT	234.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=0.365;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.62;RPA=22,24;RU=T;ReadPosRankSum=0.340;SB=0.00;SOR=3.126;STR;VQSLOD=0.269;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,13:25:8:271,0,8
1	23956158	.	TTAAAATAA	T	850.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=1.260;QD=15.95;ReadPosRankSum=1.931;SB=0.00;SOR=1.127;VQSLOD=2.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,12:22:99:888,0,214
1	23965517	rs61777309	G	A	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.046;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=5.142;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-0.567;SB=-2.701e+01;SOR=2.179;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:454,0,312
1	23965704	rs10917403	A	C	1622.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.717;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=7.421;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.793;SB=-9.340e+02;SOR=0.957;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,65:112:99:1651,0,1052
1	23965829	rs10917404	C	T	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.486;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-0.324;SB=-6.300e+01;SOR=0.885;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:534,0,580
1	23966837	rs1317329	C	T	281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=1.044;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.493;SB=-1.300e+02;SOR=1.380;VQSLOD=0.677;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,12:23:99:310,0,309
1	24018277	rs10917413	C	G	1506.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-9.460e+02;SOR=0.735;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1535,111,0
1	24022437	rs2280437	A	G	1585.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.423;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=6.972;HaplotypeScore=4.4030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-0.516;SB=-9.160e+02;SOR=0.821;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,62:120:99:1614,0,1461
1	24077451	rs2235541	C	T	803.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.641;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=7.892;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-0.775;SB=-4.540e+02;SOR=0.174;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:55:99:832,0,769
1	24083649	rs2076346	T	C	497.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.424;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.920;SB=-2.700e+02;SOR=0.752;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,18:44:99:526,0,691
1	24106510	.	A	AT	989.73	PASS	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;RPA=4,5;RU=T;SB=-1.065e+02;SOR=3.981;STR;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:34:93:1027,93,0
1	24133612	rs1018396	G	A	2490.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-1.349e+03;SOR=1.003;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2519,187,0
1	24134462	rs719399	C	T	441.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-1.185e+02;SOR=2.448;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:470,36,0
1	24134721	rs719400	T	C	5032.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=-2.821e+03;SOR=0.850;VQSLOD=5.61;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,149:149:99:5061,367,0
1	24143932	rs2076344	A	G	1134.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-5.530e+02;SOR=1.085;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1163,84,0
1	24200800	rs1105	T	C	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.24;SB=0.00;SOR=4.977;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
1	24200903	rs2229586	G	C	1463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-2.111e+02;SOR=3.258;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1492,111,0
1	24200921	rs2229585	T	C	1656.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.14;ReadPosRankSum=0.381;SB=-4.360e+02;SOR=1.292;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,49:50:91:1685,91,0
1	24200969	rs2229584	T	C	2722.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SB=-1.068e+03;SOR=1.639;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2751,202,0
1	24200983	rs2229583	C	T	2882.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-1.373e+03;SOR=1.305;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2911,214,0
1	24201094	rs2229581	G	C	5012.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-2.021e+03;SOR=1.379;VQSLOD=5.11;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,156:156:99:5041,379,0
1	24201109	rs2229580	C	T	5663.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-2.643e+03;SOR=1.206;VQSLOD=4.36;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,170:170:99:5692,421,0
1	24201262	rs2502993	A	G	6888.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=213;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-3.574e+03;SOR=1.100;VQSLOD=3.27;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,213:213:99:6917,506,0
1	24201357	rs4649124	A	G	4355.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-1.738e+03;SOR=1.407;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,122:122:99:4384,319,0
1	24201448	rs3003336	C	T	3604.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-2.174e+03;SOR=0.786;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3633,268,0
1	24201643	rs2501431	G	A	2505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-1.285e+03;SOR=0.859;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2534,196,0
1	24201919	rs2502992	T	C	4431.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.90;SB=-2.032e+03;SOR=1.161;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4460,325,0
1	24201920	rs2501432	T	C	4274.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-1.876e+03;SOR=1.179;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4303,325,0
1	24228108	rs4649133	G	A	1308.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-6.360e+02;SOR=1.364;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:96:1337,96,0
1	24228132	rs4649134	G	A	1451.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-7.120e+02;SOR=1.251;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1480,108,0
1	24228206	rs4649135	A	G	2075.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-1.116e+03;SOR=0.899;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2104,154,0
1	24228359	rs4649136	A	G	1472.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=-5.810e+02;SOR=1.514;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1501,111,0
1	24228408	rs4648921	C	T	961.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.35;SB=-1.941e+02;SOR=2.833;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:990,75,0
1	24228419	rs4648922	T	C	721.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-1.245e+02;SOR=3.160;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:750,60,0
1	24228443	rs4648923	G	A	828.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-7.997e+01;SOR=3.816;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:857,63,0
1	24228618	rs6669556	C	T	410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.46;SB=-8.097e+01;SOR=2.494;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:439,33,0
1	24228710	rs56319936	TCCCGAGTGACAA	T	3554.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.74;SB=-1.396e+03;SOR=1.179;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:26:69:3592,69,0
1	24228762	rs6662481	G	C	798.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.54;SB=-5.280e+02;SOR=0.906;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:60:827,60,0
1	24228863	rs6662584	G	A	442.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.63;SB=-1.573e+02;SOR=1.765;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:471,36,0
1	24229032	rs6672272	C	A	745.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-2.411e+02;SOR=1.931;VQSLOD=4.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:774,57,0
1	24229106	rs6677264	A	G	1091.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-5.720e+02;SOR=1.270;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:81:1120,81,0
1	24229276	rs6680554	T	C	507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-1.155e+02;SOR=2.584;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:536,42,0
1	24287780	rs148750403	GCTT	G	255.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=-0.389;SB=-5.600e+01;SOR=0.941;VQSLOD=10.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:293,0,435
1	24287812	rs199777849	GTTA	G	265.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=-0.462;SB=-7.900e+01;SOR=1.329;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:14:99:303,0,339
1	24294249	rs146630384	C	T	2583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-8.900e+02;SOR=1.923;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2612,193,0
1	24294362	rs145308205	A	T	1092.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=11.519;HaplotypeScore=2.5494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-1.092;SB=-6.180e+02;SOR=0.585;VQSLOD=4.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,43:84:99:1121,0,1032
1	24294450	.	CA	CAA,C	624.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.194;DP=80;ExcessHet=3.0103;FS=1.300;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;RPA=16,17,15;RU=A;ReadPosRankSum=-0.129;SB=-3.090e+02;SOR=0.493;STR;VQSLOD=7.48;culprit=QD	GT:AD:DP:GQ:PL	1/2:11,17,41:80:99:662,454,933,139,0,444
1	24294587	rs145191744	G	A	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.859;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.579;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-0.401;SB=-1.330e+02;SOR=0.387;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:417,0,530
1	24294627	rs115208097	C	T	270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-0.982;SB=-4.176e+01;SOR=0.223;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:299,0,272
1	24298263	rs116679590	T	C	590.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.251;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.413;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.13;ReadPosRankSum=1.147;SB=-1.810e+02;SOR=0.446;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,22:45:99:619,0,650
1	24301685	rs114213119	C	A	430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.243;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-1.422;SB=-2.380e+02;SOR=0.668;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,19:33:99:459,0,346
1	24301721	rs145233262	T	C	660.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=-8.197e+01;SOR=3.611;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:689,51,0
1	24305397	rs142675257	T	C	502.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.149;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.97;ReadPosRankSum=0.414;SB=-1.820e+02;SOR=0.250;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,20:36:99:531,0,466
1	24383819	rs7540491	T	C	1316.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-1.245e+02;SOR=4.174;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1345,99,0
1	24387822	rs7553075	T	A	224.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.079;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.11;ReadPosRankSum=1.055;SB=-1.800e+02;SOR=0.646;VQSLOD=7.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,13:45:99:253,0,837
1	24388371	rs4649168	T	C	1956.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-8.450e+02;SOR=1.329;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1985,144,0
1	24388417	rs11811060	A	G	1423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.128;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=1.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-2.127;SB=-7.060e+02;SOR=0.937;VQSLOD=7.91;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:44,53:97:99:1452,0,1236
1	24388679	rs3795303	T	C	882.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.691;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.417;SB=-3.740e+02;SOR=0.619;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,35:72:99:911,0,1113
1	24389509	rs67138023	GAA	G	179.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;RPA=3,1;RU=A;ReadPosRankSum=-0.148;SB=-1.764e+00;SOR=0.616;STR;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,5:18:99:217,0,661
1	24394587	.	T	A	1117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;DP=69;Dels=0.00;ExcessHet=3.0103;FS=11.992;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.20;ReadPosRankSum=-0.711;SB=-5.440e+02;SOR=0.117;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,40:69:99:1146,0,931
1	24400584	rs6660949	G	C	1895.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-6.910e+02;SOR=1.823;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1924,138,0
1	24400633	rs10903083	C	G	2903.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-1.355e+03;SOR=1.371;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2932,214,0
1	24416059	rs4393101	T	C	1673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-4.410e+02;SOR=2.494;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1702,123,0
1	24416628	rs72648548	T	C	1211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=1.615;HaplotypeScore=38.6331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-0.745;SB=-6.240e+02;SOR=0.469;VQSLOD=6.84;culprit=DP	GT:AD:DP:GQ:PL	0/1:63,60:127:99:1240,0,1544
1	24418768	rs7556176	T	C	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.695;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.662;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.667;SB=-5.150e-01;SOR=3.056;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:245,0,279
1	24419496	rs4233050	A	G	746.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=0.721;SB=-5.070e+02;SOR=0.667;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,33:79:99:775,0,1264
1	24421334	rs6678411	G	T	774.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.701;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=0.053;SB=-3.540e+02;SOR=0.497;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,32:76:99:803,0,1178
1	24421474	rs6678540	G	A	1180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.927;SB=-6.370e+02;SOR=0.659;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,47:95:99:1209,0,1337
1	24421875	rs11249143	C	T	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.666;SB=-2.501e+01;SOR=1.675;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:302,0,403
1	24421950	rs4319261	C	G	743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.065;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-1.214;SB=-2.990e+02;SOR=0.502;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,29:64:99:772,0,998
1	24434595	rs11249170	T	C	895.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.372;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=1.632;SB=-4.730e+02;SOR=0.475;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,32:72:99:924,0,977
1	24447116	rs3795302	C	T	238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=1.329;SB=0.00;SOR=1.445;VQSLOD=10.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:267,0,129
1	24447214	rs3795300	G	A	863.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-1.117;SB=-4.590e+02;SOR=0.382;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,33:47:99:892,0,358
1	24447468	rs3795299	G	C	708.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.554;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=1.627;SB=-3.550e+02;SOR=0.943;VQSLOD=7.51;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,26:58:99:737,0,873
1	24448084	rs17852648	G	A	367.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.921;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=0.324;SB=-2.290e+02;SOR=0.738;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:396,0,420
1	24450261	rs11249199	G	A	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.82;ReadPosRankSum=-0.562;SB=-1.190e+02;SOR=1.445;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:349,0,121
1	24460797	rs17852649	T	G	969.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.448;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=2.261;SB=-4.010e+02;SOR=1.015;VQSLOD=7.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:47,36:83:99:998,0,1233
1	24464006	.	C	CT	92.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=-0.605;POSITIVE_TRAIN_SITE;QD=8.43;RPA=15,16;RU=T;ReadPosRankSum=0.864;SB=0.00;SOR=0.859;STR;VQSLOD=3.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,6:16:84:130,0,84
1	24465113	rs10903022	C	T	732.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.254;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.303;SB=-4.470e+02;SOR=0.588;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,30:67:99:761,0,1089
1	24465309	rs10794642	C	T	64.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.89;ReadPosRankSum=1.922;SB=-4.076e+01;SOR=0.061;VQSLOD=6.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:93:93,0,238
1	24484441	rs946671	A	G	1271.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-5.840e+02;SOR=1.206;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1300,96,0
1	24485518	rs10751769	T	C	947.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-1.403e+02;SOR=3.258;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:976,72,0
1	24485813	rs4649194	T	C	808.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.05;SB=-3.680e+02;SOR=0.963;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:63:837,63,0
1	24485941	rs4649195	T	C	2032.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-8.580e+02;SOR=1.539;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2061,150,0
1	24486216	rs34545094	GT	G	267.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.31;RPA=10,9;RU=T;SB=0.00;SOR=5.136;STR;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:18:36:305,36,0
1	24487760	rs7552000	T	C	792.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-1.423e+02;SOR=2.925;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:821,60,0
1	24668842	rs4648974	T	C	426.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.367;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.081;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=1.823;SB=-9.732e-01;SOR=2.066;VQSLOD=6.80;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,13:30:99:455,0,481
1	24671287	rs4648859	C	T	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.40;ReadPosRankSum=-0.479;SB=-9.400e+01;SOR=0.593;VQSLOD=9.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,8:22:99:169,0,377
1	24673866	rs6691722	A	G	2230.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-8.560e+02;SOR=1.842;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2259,175,0
1	24680915	rs12030057	C	T	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.894;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=0.164;SB=-2.280e+02;SOR=0.337;VQSLOD=7.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,15:38:99:340,0,572
1	24687653	rs532147	T	C	482.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-3.377e+01;SOR=4.047;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:511,42,0
1	24690764	rs545809	T	A	1515.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.463;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.770;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=-0.437;SB=-7.540e+02;SOR=0.840;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,51:96:99:1544,0,1187
1	24690894	rs74060321	C	T	963.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=4.196;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.391;SB=-4.070e+02;SOR=1.207;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,37:87:99:992,0,1269
1	24706113	rs3765428	G	A	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.583;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.000;SB=-6.700e+01;SOR=0.693;VQSLOD=10.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:337,0,354
1	24706269	rs1064842	A	G	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.12;ReadPosRankSum=0.093;SB=-2.430e+02;SOR=0.951;VQSLOD=8.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,21:56:99:483,0,963
1	24706292	rs1142057	T	C	522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.455;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-0.105;SB=-2.560e+02;SOR=1.230;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,21:51:99:551,0,849
1	24706329	rs41307808	C	A	739.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.375;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=-1.139;SB=-3.400e+02;SOR=0.812;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,29:48:99:768,0,482
1	24706410	rs3765431	T	C	152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=-0.771;SB=-3.500e+01;SOR=0.340;VQSLOD=9.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:181,0,357
1	24718075	rs2294520	T	C	1555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-0.251;SB=-9.840e+02;SOR=0.704;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,60:95:99:1584,0,920
1	24727678	rs2078445	C	T	1637.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-5.900e+02;SOR=1.848;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1666,123,0
1	24746205	rs12125143	C	T	843.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.987;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.746;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.96;ReadPosRankSum=-1.142;SB=-5.320e+02;SOR=0.600;VQSLOD=7.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:65,41:106:99:872,0,1704
1	24768778	rs4648863	G	C	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.476;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.384;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.11;ReadPosRankSum=-0.142;SB=-1.200e+02;SOR=0.976;VQSLOD=7.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,13:34:99:304,0,599
1	24779855	rs2272934	T	C	484.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.066;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.142;SB=-3.200e+01;SOR=0.906;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:40:99:513,0,714
1	24784139	rs10903089	A	G	573.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-0.232;SB=-6.000e+01;SOR=0.824;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,20:51:99:602,0,962
1	24784197	rs195718	T	C	1058.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.233;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=3.095;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-0.719;SB=-3.250e+02;SOR=1.101;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,41:87:99:1087,0,1233
1	24785393	rs2272935	C	T	1753.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=3.108;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.917;SB=-7.820e+02;SOR=1.022;VQSLOD=7.81;culprit=DP	GT:AD:DP:GQ:PL	0/1:75,63:138:99:1782,0,1980
1	24792617	rs195725	T	A	399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.690;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=0.060;SB=-1.400e+02;SOR=1.387;VQSLOD=7.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,17:51:99:428,0,1006
1	24840768	rs196403	G	A	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.046;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.060;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.49;ReadPosRankSum=0.511;SB=-2.601e+01;SOR=1.236;VQSLOD=6.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:132,0,245
1	24859617	rs196429	G	A	437.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-0.502;SB=-2.230e+02;SOR=0.776;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,19:37:99:466,0,414
1	24859665	rs196430	G	A	596.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.024;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-0.443;SB=-3.130e+02;SOR=0.765;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,23:45:99:625,0,544
1	24861704	rs196432	G	A	347.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.641;SB=-9.400e+01;SOR=1.061;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:376,0,349
1	24922129	rs10903095	G	A	1026.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.497;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=0.591;SB=-2.100e+02;SOR=0.625;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,35:61:99:1055,0,753
1	24927561	rs4553122	T	C	3830.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-2.008e+03;SOR=1.234;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3859,292,0
1	24927625	rs4378146	C	A	910.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.731;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.896;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=0.077;SB=-3.010e+02;SOR=0.939;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,35:88:99:939,0,1411
1	24927727	rs55691364	C	T	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.484;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-0.190;SB=-6.800e+01;SOR=0.997;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:564,0,366
1	24927731	rs56316061	G	A	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=-0.476;SB=-6.700e+01;SOR=0.997;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:563,0,365
1	24975545	.	T	G	266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.69;ReadPosRankSum=0.503;SB=-1.090e+02;SOR=1.038;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:295,0,165
1	24989762	rs4649011	G	T	1781.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-5.760e+02;SOR=2.066;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1810,132,0
1	25098245	rs9332415	T	C	667.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.460;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.038;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-0.204;SB=-1.270e+02;SOR=0.193;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,23:50:99:696,0,856
1	25098341	rs7548438	C	T	1416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.459;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.704;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-0.509;SB=-6.250e+02;SOR=0.595;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:73,52:125:99:1445,0,2100
1	25140825	rs3890756	A	G	370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.519;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=0.219;SB=-1.090e+02;SOR=0.593;VQSLOD=10.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:399,0,305
1	25153692	rs4649022	G	A	1347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-7.460e+02;SOR=1.132;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1376,99,0
1	25254317	rs7517302	C	T	514.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.273;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-1.460;SB=-3.200e+01;SOR=1.255;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:543,0,627
1	25256162	rs139319032	G	A	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.89;ReadPosRankSum=-0.361;SB=-1.080e+02;SOR=0.330;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:247,0,122
1	25291010	rs6672420	A	T	678.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-0.938;SB=-2.900e+02;SOR=0.527;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,31:66:99:707,0,888
1	25554079	rs200794956	AT	A	914.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DB;DP=52;ExcessHet=3.0103;FS=7.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.94;RPA=2,1;RU=T;ReadPosRankSum=0.273;SB=-2.750e+02;SOR=0.146;STR;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,25:52:99:952,0,1010
1	25570081	rs1043879	T	C	1083.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.681;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=6.349;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=1.549;SB=-6.260e+02;SOR=0.725;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,41:71:99:1112,0,876
1	25570550	.	A	AT	531.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DP=27;ExcessHet=3.0103;FS=3.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.43;RPA=12,13;RU=T;ReadPosRankSum=0.000;SB=-1.013e+02;SOR=2.093;STR;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,23:27:1:566,0,1
1	25611035	rs2301153	G	C	3276.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=2;POSITIVE_TRAIN_SITE;QD=32.77;SB=-1.135e+03;SOR=1.945;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3305,244,0
1	25678002	rs66744254	TA	T	394.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.78;RPA=14,13;RU=A;SB=-2.877e+01;SOR=4.514;STR;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:20:56:432,56,0
1	25678238	rs3093616	T	A	1793.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-6.210e+02;SOR=2.001;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1822,132,0
1	25747399	rs2072931	G	T	126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.99;MQ0=0;MQRankSum=-3.156;POSITIVE_TRAIN_SITE;QD=8.45;ReadPosRankSum=-0.171;SB=-1.765e+00;SOR=1.230;VQSLOD=2.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:155,0,291
1	25780668	rs34006994	C	T	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=0.597;SB=-6.500e+01;SOR=0.515;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:264,0,442
1	25780889	rs66568068	A	ATG	172.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.307;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.31;MQ0=0;MQRankSum=1.504;POSITIVE_TRAIN_SITE;QD=10.80;RPA=1,2;RU=TG;ReadPosRankSum=-1.522;SB=0.00;SOR=0.340;STR;VQSLOD=2.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:17:99:210,0,440
1	25780893	.	A	G	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7319;MLEAC=1;MLEAF=0.500;MQ=61.39;MQ0=0;MQRankSum=1.769;QD=10.78;ReadPosRankSum=-1.158;SB=0.00;SOR=0.399;VQSLOD=1.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:16:99:190,0,315
1	25785451	rs35530120	A	G	121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.29;ReadPosRankSum=1.085;SB=-2.203e+01;SOR=0.765;VQSLOD=8.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,6:23:99:150,0,517
1	25889342	rs10687390	CAG	C	1281.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;DB;DP=57;ExcessHet=3.0103;FS=3.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.30;RPA=2,1;RU=AG;ReadPosRankSum=-0.910;SB=-4.570e+02;SOR=1.281;STR;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:57:99:1319,0,1292
1	25889422	rs12096438	C	T	779.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.684;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=5.587;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-0.027;SB=-3.190e+02;SOR=0.944;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,27:53:99:808,0,730
1	25889632	rs6687605	T	C	601.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.251;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.440;SB=-2.190e+02;SOR=0.773;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,25:55:99:630,0,816
1	25889672	rs6688931	G	A	476.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.317;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-1.013;SB=-8.900e+01;SOR=1.371;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,18:36:99:505,0,469
1	25890050	rs6661159	A	G	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.259;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.171;SB=-1.300e+02;SOR=1.022;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:408,0,306
1	25890189	rs28969504	A	G	1026.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.572;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=4.159;HaplotypeScore=3.7213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-0.949;SB=-6.130e+02;SOR=0.552;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,45:83:99:1055,0,1000
1	25890247	rs41291058	C	T	894.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=0.463;SB=-5.300e+02;SOR=0.774;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,39:85:99:923,0,1026
1	25893221	rs4523506	G	T	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=-0.723;SB=0.00;SOR=0.941;VQSLOD=10.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:320,0,206
1	25893242	rs4418583	T	C	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.000;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.752;SB=-3.500e+01;SOR=0.693;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:418,0,363
1	25893243	rs4603124	G	A	372.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.054;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.752;SB=-3.400e+01;SOR=0.693;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:401,0,378
1	26085048	rs11321223	AG	A	1412.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;RPA=6,5;RU=G;SB=-2.640e+02;SOR=3.109;STR;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1450,129,0
1	26090072	rs807270	A	G	551.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.59;SB=-3.250e+02;SOR=1.127;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:42:580,42,0
1	26098107	rs2072747	G	A	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.918;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.742;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=-2.569;SB=-1.060e+02;SOR=1.214;VQSLOD=7.24;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,22:37:99:705,0,395
1	26098333	rs807264	G	A	1313.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;SB=-2.361e+02;SOR=3.145;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1342,99,0
1	26098350	rs807263	G	A	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.696;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-0.655;SB=-3.300e+01;SOR=0.627;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:454,0,473
1	26107688	rs807273	C	A	3088.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-1.646e+03;SOR=0.963;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3117,232,0
1	26109237	rs12567324	A	G	521.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=0.243;SB=-1.320e+02;SOR=1.426;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:550,0,274
1	26109307	rs2072746	G	C	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=-0.071;SB=0.00;SOR=1.765;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:359,0,120
1	26110065	rs3820514	A	G	1008.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.568;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-0.081;SB=-3.580e+02;SOR=1.167;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,39:71:99:1037,0,753
1	26110143	rs3767877	G	A	1344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=1.569;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-0.564;SB=-8.560e+02;SOR=0.514;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1373,0,1509
1	26127425	rs6659086	G	A	420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.447;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.608;SB=-3.300e+01;SOR=0.473;VQSLOD=9.12;culprit=SOR	GT:AD:DP:GQ:PL	0/1:18,14:32:99:449,0,604
1	26128307	rs10902683	C	T	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=-0.984;SB=-4.076e+01;SOR=0.569;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:97:213,0,97
1	26131654	rs7349185	G	A	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.599;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.789;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=0.468;SB=-9.800e+01;SOR=0.315;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,16:41:99:454,0,836
1	26136452	rs6686366	A	C	83.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.98;ReadPosRankSum=1.074;SB=0.00;SOR=0.269;VQSLOD=9.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:112,0,288
1	26138136	rs760598	C	A	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.902;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.693;SB=-2.630e+02;SOR=0.719;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,22:41:99:565,0,596
1	26138262	rs760597	T	C	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=-1.375;SB=-2.310e+02;SOR=0.724;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:469,0,354
1	26139137	rs10902685	C	T	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.123;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.307;SB=-5.150e-01;SOR=2.303;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:272,0,395
1	26139392	rs3738451	A	G	698.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.370;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.057;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.816;SB=-2.420e+02;SOR=0.857;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,27:57:99:727,0,794
1	26139444	rs10751726	G	A	266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.982;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.069;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-1.432;SB=-1.709e+01;SOR=1.432;VQSLOD=7.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:27:99:295,0,519
1	26139879	rs6676413	C	G	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.432;SB=-4.276e+01;SOR=0.184;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:282,0,306
1	26139919	rs6676509	C	T	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.19;ReadPosRankSum=-0.113;SB=-6.100e+01;SOR=0.719;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,9:25:99:258,0,498
1	26140573	rs2294228	C	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.535;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.89;ReadPosRankSum=-0.385;SB=-1.020e+02;SOR=0.467;VQSLOD=9.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:30:99:235,0,653
1	26146884	rs984412	C	G	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=5.756;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.141;SB=-2.801e+01;SOR=2.584;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:251,0,174
1	26150023	rs11247758	C	T	940.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-1.827;SB=-5.210e+02;SOR=0.627;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,36:63:99:969,0,871
1	26152666	rs6598923	T	C	558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.706;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.257;SB=-1.390e+02;SOR=0.693;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:40:99:587,0,574
1	26152758	rs6598924	A	G	1123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-1.507;SB=-6.080e+02;SOR=0.776;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,46:97:99:1152,0,1308
1	26158337	rs1961580	C	T	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=-1.860;SB=0.00;SOR=1.609;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:316,0,123
1	26310213	rs2275101	T	C	722.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.465;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.333;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=0.265;SB=-2.170e+02;SOR=0.985;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,25:40:99:751,0,417
1	26310394	rs2275102	A	G	603.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.600;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-1.566;SB=-2.690e+02;SOR=1.136;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,24:43:99:632,0,611
1	26310836	rs3738458	G	T	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.187;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.671;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=1.789;SB=-1.360e+02;SOR=0.297;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,13:33:99:362,0,650
1	26314564	rs2245979	T	C	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.501;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=-0.397;SB=-3.001e+01;SOR=1.493;VQSLOD=10.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:429,0,197
1	26314625	rs2257255	G	A	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.663;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.376;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.178;SB=-2.070e+02;SOR=0.368;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,17:40:99:438,0,659
1	26349967	rs1938405	C	T	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=-1.485;SB=-3.100e+01;SOR=1.179;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:157,0,200
1	26357656	rs2736831	C	A	1082.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.157;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=4.437;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=-0.349;SB=-7.100e+02;SOR=0.489;VQSLOD=7.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:78,47:125:99:1111,0,2242
1	26357855	rs2802321	A	G	1437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-7.410e+02;SOR=1.055;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1466,105,0
1	26358752	.	T	TA	490.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;DP=35;ExcessHet=3.0103;FS=2.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;RPA=2,3;RU=A;ReadPosRankSum=1.040;SB=-2.701e+01;SOR=1.708;STR;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:528,0,623
1	26365374	rs4659404	T	G	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.497;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=1.252;SB=-1.340e+02;SOR=0.078;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:251,0,203
1	26365549	rs2997452	C	T	673.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.213;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=13.646;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.560;SB=-3.970e+02;SOR=0.087;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,28:58:99:702,0,1038
1	26372144	rs6686190	A	G	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=-0.142;SB=0.00;SOR=0.368;VQSLOD=9.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:124,0,278
1	26487940	rs3748856	A	G	804.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.918;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=0.797;SB=-4.770e+02;SOR=0.830;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,31:66:99:833,0,1033
1	26496383	rs2232647	G	T	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.233;SB=0.00;SOR=0.446;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:166,0,216
1	26496455	rs2232648	C	T	620.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.491;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=5.844;HaplotypeScore=1.4942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-1.563;SB=-2.380e+02;SOR=0.105;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:649,0,619
1	26508538	rs114806650	C	T	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.248;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=1.381;SB=0.00;SOR=0.914;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:336,0,226
1	26510336	rs115982258	C	T	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.272;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1212;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=1.294;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=-1.304;SB=-4.276e+01;SOR=0.352;VQSLOD=1.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,13:22:99:341,0,276
1	26511139	rs2297711	G	A	87.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.251;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.88;ReadPosRankSum=-0.888;SB=-6.829e-02;SOR=1.755;VQSLOD=6.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:116,0,341
1	26511700	rs2783680	A	G	663.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-3.600e+02;SOR=0.963;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:51:692,51,0
1	26514111	rs61319457	CT	C	123.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;DB;DP=29;ExcessHet=3.0103;FS=3.882;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=1.294;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=5.62;RPA=20,19;RU=T;ReadPosRankSum=-0.301;SB=-1.769e+00;SOR=2.368;STR;VQSLOD=0.065;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,13:29:99:161,0,122
1	26515956	rs1045105	C	A	720.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.723;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=11.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.825;SB=-1.970e+02;SOR=1.613;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,26:59:99:749,0,935
1	26517667	rs11247864	T	C	715.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.960;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.677;SB=-2.810e+02;SOR=0.538;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,26:52:99:744,0,765
1	26524706	rs9970046	A	G	3667.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7157;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-1.965e+03;SOR=0.990;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3696,265,0
1	26527783	rs6703730	G	A	950.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.216;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=10.140;HaplotypeScore=3.6479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=0.016;SB=-1.905e+01;SOR=2.712;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,30:58:99:979,0,835
1	26527863	rs17163674	C	T	1828.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.253;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=3.294;HaplotypeScore=6.2980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.433;SB=-5.590e+02;SOR=1.041;VQSLOD=7.87;culprit=DP	GT:AD:DP:GQ:PL	0/1:73,69:142:99:1857,0,2150
1	26528181	.	C	CTT	203.74	PASS	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.64;RPA=17,19;RU=T;SB=0.00;SOR=4.615;STR;VQSLOD=4.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:17:25:241,25,0
1	26528922	rs10902720	C	G	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.490;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.619;HaplotypeScore=1.1567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-0.065;SB=-1.905e+01;SOR=2.179;VQSLOD=6.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:23:99:241,0,372
1	26529061	rs114100693	G	A	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.731;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.311;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.321;SB=-2.480e+02;SOR=0.835;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:35:99:504,0,466
1	26529121	rs6691747	G	C	749.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-2.071e+02;SOR=2.494;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:778,57,0
1	26545864	rs6700455	T	C	379.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-3.976e+01;SOR=3.258;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:408,30,0
1	26545865	rs6683157	G	A	355.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-4.076e+01;SOR=3.258;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:384,30,0
1	26570482	.	C	CAA	210.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;RPA=26,28;RU=A;ReadPosRankSum=-0.187;SB=-7.894e+00;SOR=0.804;STR;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:25:99:248,0,140
1	26583998	rs4659417	T	C	368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.40;SB=0.00;SOR=4.804;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:397,30,0
1	26596080	rs7550997	G	A	580.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.016;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=2.868;SB=-2.780e+02;SOR=0.327;VQSLOD=7.27;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,19:39:99:609,0,527
1	26597435	rs4659419	G	A	2737.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-1.254e+03;SOR=1.286;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2766,205,0
1	26597673	rs11247894	G	A	1098.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-2.001e+02;SOR=3.126;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1127,84,0
1	26601570	rs11577318	A	G	668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.542;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-0.607;SB=-2.700e+02;SOR=0.923;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,26:62:99:697,0,968
1	26606174	rs10902732	A	C	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-0.906;SB=0.00;SOR=0.693;VQSLOD=10.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:172,0,170
1	26607726	rs7544	T	G	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.138;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.952;SB=-1.790e+02;SOR=0.892;VQSLOD=10.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:368,0,146
1	26608761	rs12354062	C	T	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=6.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=-0.431;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=0.325;SB=-1.807e+01;SOR=1.431;VQSLOD=0.141;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:122,0,283
1	26608769	rs35567724	C	T	241.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=6.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.431;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=0.165;SB=-6.500e+01;SOR=1.739;VQSLOD=0.202;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:270,0,116
1	26608814	rs6672357	A	G	421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-8.097e+01;SOR=2.147;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:450,36,0
1	26608843	rs6667693	C	A	40.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=64.64;MQ0=0;MQRankSum=0.196;QD=2.26;ReadPosRankSum=-2.212;SB=-2.901e+01;SOR=0.223;VQSLOD=1.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:18:69:69,0,372
1	26608853	.	GCCGGGACCGGGACCGGGACTGGGGCCGGGA	G	2913.73	PASS	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.69;MQ0=0;QD=15.34;SB=-4.871e+02;SOR=1.981;VQSLOD=1.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:20:57:2951,57,0
1	26609093	rs72872912	A	T	1232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=2.954;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-0.772;SB=-6.230e+02;SOR=0.355;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,45:89:99:1261,0,1218
1	26609307	rs6598952	G	T	1418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-5.990e+02;SOR=1.609;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1447,108,0
1	26610891	rs4332350	A	C	2435.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.880;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.07;ReadPosRankSum=-0.963;SB=-1.499e+03;SOR=0.302;VQSLOD=4.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,80:81:99:2464,187,0
1	26612042	rs11247898	A	G	352.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.14;SB=-2.471e+02;SOR=0.836;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:381,27,0
1	26612297	rs11579630	C	A	1185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=3.104;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=-0.782;SB=-2.330e+02;SOR=1.417;VQSLOD=6.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,39:57:99:1214,0,433
1	26612460	rs11247900	G	A	1451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.539;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=3.084;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=0.925;SB=-7.250e+02;SOR=1.164;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,57:87:99:1480,0,774
1	26620846	rs67700711	C	CA	3130.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.65;SB=-7.460e+02;SOR=2.340;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:3168,190,0
1	26627283	rs4291487	A	G	596.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-8.297e+01;SOR=3.500;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:625,51,0
1	26627478	rs2276712	T	C	1415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.575;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.520;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-0.402;SB=-8.080e+02;SOR=0.460;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1444,0,1484
1	26629465	rs11803933	G	C	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=1.010;SB=-1.765e+00;SOR=0.770;VQSLOD=9.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:167,0,418
1	26644399	rs41285347	C	T	383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.601;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=1.036;SB=-9.714e+01;SOR=0.169;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:412,0,448
1	26644698	rs12090258	C	T	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=4.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=-0.566;SB=-1.765e+00;SOR=2.636;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:274,0,132
1	26646574	rs112252579	G	A	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-0.102;SB=0.00;SOR=0.693;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:254,0,279
1	26646726	rs1071849	A	G	842.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.192;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-1.136;SB=-5.510e+02;SOR=0.752;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,33:71:99:871,0,931
1	26646730	rs17645	A	G	833.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.059;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-0.692;SB=-4.720e+02;SOR=0.752;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,33:71:99:862,0,930
1	26648381	rs17163868	C	T	265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.897;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.891;SB=-2.501e+01;SOR=1.329;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:294,0,328
1	26648551	rs11247913	G	C	1009.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=3.846;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-1.192;SB=-4.510e+02;SOR=1.159;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,41:98:99:1038,0,1489
1	26648826	rs60799739	G	A	845.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=4.503;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.793;SB=-1.360e+02;SOR=0.148;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,28:53:99:874,0,845
1	26648838	rs11247914	G	T	650.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.184;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-1.683;SB=-3.000e+01;SOR=1.118;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,22:46:99:679,0,804
1	26650550	rs11247915	C	A	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.130;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=8.994;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-1.574;SB=-1.881e+02;SOR=0.037;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,18:29:99:490,0,378
1	26654937	rs11589684	G	C	1454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.64;SB=-3.260e+02;SOR=2.780;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1483,108,0
1	26655208	rs11247916	C	T	1493.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-1.403e+02;SOR=3.716;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1522,111,0
1	26655462	rs12057290	C	T	1292.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-3.460e+02;SOR=2.584;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1321,102,0
1	26655507	rs11247917	C	A	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.281;SB=-3.577e+01;SOR=0.223;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:199,0,243
1	26662774	rs7517559	C	T	2230.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-7.320e+02;SOR=1.911;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2259,166,0
1	26663362	rs10751735	C	T	1081.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-6.510e+02;SOR=0.859;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:81:1110,81,0
1	26664968	rs11247919	C	T	815.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.108;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=1.825;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-0.507;SB=-4.020e+02;SOR=0.923;VQSLOD=7.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,32:84:99:844,0,1401
1	26665991	rs6675432	C	G	338.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-4.176e+01;SOR=3.258;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:367,27,0
1	26670752	rs11247923	C	T	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.898;SB=-2.050e+02;SOR=0.223;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:341,0,384
1	26671084	rs12562454	G	T	1443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.527;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2321;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=0.929;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.318;SB=-8.440e+02;SOR=0.729;VQSLOD=1.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:66,55:121:99:1472,0,1793
1	26671248	rs57268417	A	G	825.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.611;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=4.847;HaplotypeScore=5.1687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.691;SB=-2.740e+02;SOR=1.334;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,30:72:99:854,0,1088
1	26673076	rs11247924	G	A	1195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=2.948;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.295;SB=-3.700e+02;SOR=1.087;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1224,0,1208
1	26673108	rs11247925	C	T	1051.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=5.824;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.201;SB=-1.470e+02;SOR=1.609;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,36:78:99:1080,0,1111
1	26673220	rs11247926	A	G	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.061;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.056;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=1.159;SB=-9.732e-01;SOR=1.949;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:271,0,386
1	26688181	rs11583897	G	C	784.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.151;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=12.491;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=1.179;SB=-4.670e+02;SOR=0.139;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,34:87:99:813,0,1451
1	26690864	rs7534104	G	T	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.681;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=-0.738;SB=0.00;SOR=0.223;VQSLOD=9.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:157,0,358
1	26694245	rs10794531	T	C	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=-0.342;SB=-1.230e+02;SOR=0.722;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:210,0,287
1	26694260	rs10794532	T	C	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.298;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=-0.925;SB=-1.300e+02;SOR=0.892;VQSLOD=9.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,9:21:99:210,0,285
1	26698884	rs11247936	T	C	1057.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.787;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.717;SB=-5.020e+02;SOR=0.850;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,41:94:99:1086,0,1459
1	26698938	rs6703878	A	G	1244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.671;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.716;HaplotypeScore=2.8133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.423;SB=-6.060e+02;SOR=1.047;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,45:93:99:1273,0,1322
1	26699103	rs11584185	T	C	870.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.771;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.267;HaplotypeScore=3.6820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=2.450;SB=-1.650e+02;SOR=1.132;VQSLOD=7.72;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,29:58:99:899,0,705
1	26699157	rs11247937	T	C	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=-1.200;SB=-4.176e+01;SOR=0.275;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:288,0,213
1	26700795	rs7520030	T	C	987.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-5.030e+02;SOR=1.044;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1016,75,0
1	26752992	.	T	C	1944.77	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.39;SB=-6.140e+02;SOR=2.376;VQSLOD=4.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1973,153,0
1	26769543	.	C	CTTTTTT	1000.73	PASS	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;RPA=5,11;RU=T;SB=-8.576e+01;SOR=3.912;STR;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:15:42:1038,42,0
1	26786627	rs3816539	G	A	879.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=1.503;SB=-5.810e+02;SOR=0.667;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,37:81:99:908,0,1065
1	26846195	rs4970514	C	T	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.752;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-0.976;SB=-1.330e+02;SOR=0.793;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:317,0,231
1	26869610	rs921893	G	A	1036.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.883;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.162;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=-0.122;SB=-4.610e+02;SOR=0.442;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,41:73:99:1065,0,949
1	26870730	rs1466286	C	G	798.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.270;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.995;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-0.197;SB=-4.940e+02;SOR=0.560;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:827,0,784
1	26872554	rs12723936	A	G	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=1.348;SB=-1.360e+02;SOR=0.693;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:249,0,200
1	26873245	rs2278978	A	G	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.211;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-0.417;SB=0.00;SOR=0.458;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:501,0,636
1	26877708	rs2278979	G	A	337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.041;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-0.676;SB=0.00;SOR=0.990;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:366,0,311
1	26878402	.	T	G	767.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.468;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.71;ReadPosRankSum=1.558;SB=-8.500e+01;SOR=0.720;VQSLOD=7.94;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,25:56:99:796,0,940
1	26879376	rs7543005	T	C	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=0.005;SB=-9.732e-01;SOR=0.941;VQSLOD=9.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,6:12:99:124,0,108
1	26879792	rs4970489	T	C	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;ReadPosRankSum=-1.891;SB=-9.732e-01;SOR=1.721;VQSLOD=6.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:121,0,257
1	26879920	rs4970490	T	C	1041.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.71;SB=-6.090e+02;SOR=0.968;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:78:1070,78,0
1	26880288	rs2290589	C	T	42.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.28;ReadPosRankSum=-1.579;SB=-6.100e+01;SOR=0.307;VQSLOD=9.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:71:71,0,151
1	26880989	rs873151	T	C	928.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.879;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.801;SB=-1.170e+02;SOR=0.495;VQSLOD=8.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,31:61:99:957,0,974
1	26881806	rs897641	C	A	1342.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-6.630e+02;SOR=0.749;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1371,105,0
1	26887150	rs34062688	A	G	2759.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-5.570e+02;SOR=3.098;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2788,202,0
1	26887592	rs1064196	T	C	2695.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-1.770e+03;SOR=0.780;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2724,202,0
1	26898142	rs188158	A	G	4549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=-1.789e+03;SOR=1.662;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4578,334,0
1	26898956	rs282176	T	C	1225.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-4.110e+02;SOR=2.012;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1254,90,0
1	26899687	rs282178	C	A	1381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-4.960e+02;SOR=1.721;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1410,105,0
1	26900735	rs282179	C	G	3373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-1.864e+03;SOR=0.967;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3402,244,0
1	27179062	rs10902645	G	T	1075.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-3.100e+02;SOR=2.432;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1104,84,0
1	27210530	rs373357961	CA	C	81.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.09;RPA=19,18;RU=A;ReadPosRankSum=-1.294;SB=0.00;SOR=0.527;STR;VQSLOD=7.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:20:99:119,0,165
1	27210721	rs3170660	T	C	2930.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-1.621e+03;SOR=0.874;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2959,229,0
1	27220020	.	C	CT	74.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.28;MQ0=0;MQRankSum=1.382;POSITIVE_TRAIN_SITE;QD=3.25;RPA=21,22;RU=T;ReadPosRankSum=2.596;SB=-2.110e+01;SOR=0.250;STR;VQSLOD=2.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:37:99:112,0,163
1	27255908	rs368508089	A	C	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8606;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=0.925;QD=11.72;ReadPosRankSum=0.000;SB=0.00;SOR=0.412;VQSLOD=0.369;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,9:22:99:286,0,452
1	27339103	rs4970471	G	T	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-1.008;SB=-3.976e+01;SOR=0.105;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:193,0,245
1	27426796	rs4266911	T	C	504.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-1.363e+02;SOR=2.049;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:533,39,0
1	27427041	rs4418629	T	C	2225.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;SB=-1.072e+03;SOR=1.196;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2254,166,0
1	27609980	rs6670124	T	G	3387.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7620;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-1.467e+03;SOR=1.413;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3416,247,0
1	27610069	rs10902656	C	T	2113.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=-5.460e+02;SOR=2.419;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2142,160,0
1	27659965	rs6687283	C	T	476.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=0.00;SOR=5.283;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:505,39,0
1	27660340	rs12758154	T	C	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.234;SB=0.00;SOR=0.446;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:337,0,480
1	27660568	rs35771571	G	A	2153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.787;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=3.086;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-1.162;SB=-1.107e+03;SOR=0.480;VQSLOD=7.24;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,75:140:99:2182,0,1870
1	27661037	rs12565684	T	C	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.025;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.828;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=0.137;SB=-9.800e+01;SOR=1.508;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:463,0,356
1	27661213	.	C	T	1366.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.716;DP=97;Dels=0.00;ExcessHet=3.0103;FS=2.713;HaplotypeScore=2.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.24;ReadPosRankSum=0.944;SB=-8.200e+02;SOR=0.851;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,56:97:99:1395,0,981
1	27676925	rs6702341	G	A	1455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.734;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.770;SB=-7.340e+02;SOR=0.728;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,60:122:99:1484,0,1854
1	27679692	rs11247639	A	G	2242.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.07;SB=-1.205e+02;SOR=5.387;VQSLOD=2.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2271,172,0
1	27679797	rs3813795	A	G	5151.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-2.782e+03;SOR=1.146;VQSLOD=4.65;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,173:173:99:5180,388,0
1	27679954	rs1128918	G	A	1798.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.582;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=2.938;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=0.927;SB=-5.820e+02;SOR=0.436;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,62:109:99:1827,0,1274
1	27680292	rs8533	A	G	542.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.046;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.135;SB=-3.520e+02;SOR=0.717;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,22:48:99:571,0,673
1	27683836	rs79512993	C	G	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=2.091;SB=-1.300e+02;SOR=0.593;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,12:34:99:367,0,562
1	27686063	rs7521552	G	C	2342.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-7.650e+02;SOR=2.015;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2371,172,0
1	27687366	rs35733093	C	G	747.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.269;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=-0.438;SB=-4.400e+02;SOR=0.381;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:776,0,582
1	27688633	rs1138294	G	A	974.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.748;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.918;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.731;SB=-6.310e+02;SOR=0.644;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,40:71:99:1003,0,862
1	27688792	rs376624035	A	G	643.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.237;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.51;ReadPosRankSum=0.751;SB=-1.640e+02;SOR=1.751;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,22:39:99:672,0,439
1	27696011	rs10218730	C	T	2272.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-3.470e+02;SOR=3.578;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2301,175,0
1	27696101	rs72882747	C	A	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.277;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-0.206;SB=0.00;SOR=0.495;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:216,0,307
1	27697474	rs3813800	G	C	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=0.301;SB=-6.600e+01;SOR=0.358;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:217,0,210
1	27705915	rs2273269	C	T	80.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=5.454;HaplotypeScore=11.6672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.67;ReadPosRankSum=-0.298;SB=-4.764e+00;SOR=1.456;VQSLOD=5.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,4:25:99:109,0,415
1	27709020	rs2504779	T	C	667.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.077;HaplotypeScore=2.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-0.247;SB=-3.040e+02;SOR=0.464;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,24:59:99:696,0,988
1	27720178	rs2504786	T	C	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.584;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.735;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-0.630;SB=-2.100e+02;SOR=0.270;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,18:29:99:468,0,340
1	27736478	rs2273270	T	C	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=1.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=0.776;SB=-1.410e+02;SOR=0.732;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:308,0,162
1	27875824	rs4908364	C	T	1087.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-6.500e+02;SOR=0.693;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1116,84,0
1	27876482	rs2076457	C	A	1023.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.946;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.864;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.680;SB=-4.270e+02;SOR=0.911;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,39:78:99:1052,0,1007
1	27939566	rs375451812	G	A	762.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.577;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.020;HaplotypeScore=2.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.92;ReadPosRankSum=0.081;SB=-2.870e+02;SOR=0.892;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,31:64:99:791,0,964
1	27942276	rs142998887	G	A	255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=10.477;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.31;ReadPosRankSum=-0.052;SB=-1.030e+02;SOR=1.269;VQSLOD=5.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,12:35:99:284,0,595
1	27944000	rs1292089	T	A	669.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-1.493e+02;SOR=2.093;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:698,51,0
1	27995077	rs56015130	G	T	1172.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-4.500e+02;SOR=1.179;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1201,90,0
1	27995557	rs112730044	T	C	404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9149;MLEAC=1;MLEAF=0.500;MQ=62.79;MQ0=0;MQRankSum=-2.918;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=0.099;SB=-6.300e+01;SOR=1.270;VQSLOD=3.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,13:19:80:433,0,80
1	27995565	rs71514291	C	T	456.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.284;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=61.88;MQ0=0;MQRankSum=-2.286;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=-0.063;SB=-1.080e+02;SOR=1.609;VQSLOD=3.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,14:17:69:485,0,69
1	28086955	rs10902671	C	A	1550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-6.760e+02;SOR=1.473;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1579,117,0
1	28087289	.	T	C	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;DP=71;Dels=0.00;ExcessHet=3.0103;FS=7.147;HaplotypeScore=3.4152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.705;SB=-3.870e+02;SOR=0.223;VQSLOD=5.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,27:71:99:643,0,1212
1	28199253	rs61787158	A	G	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.111;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.719;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=1.638;SB=-1.410e+02;SOR=0.307;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:277,0,353
1	28206588	rs12568383	T	C	760.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.872;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.209;HaplotypeScore=2.6274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-1.237;SB=-2.000e+02;SOR=0.988;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,30:58:99:789,0,760
1	28209305	rs3766398	A	G	2506.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-1.428e+03;SOR=0.968;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2535,184,0
1	28209362	rs3766399	T	C	2042.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-1.194e+03;SOR=1.054;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2071,153,0
1	28209366	rs3766400	A	G	2153.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-1.180e+03;SOR=1.042;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2182,157,0
1	28211650	rs1467464	T	C	524.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.605;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.231;SB=-6.200e+01;SOR=0.756;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:35:99:553,0,533
1	28212272	rs11247705	G	A	573.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-0.722;SB=-1.740e+02;SOR=0.873;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:602,0,332
1	28220399	rs113043932	C	T	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.745;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.868;SB=-8.097e+01;SOR=0.148;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:332,0,301
1	28224312	rs2295367	C	T	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.064;SB=0.00;SOR=0.473;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:192,0,246
1	28261495	rs45461292	C	T	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.365;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=14.800;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=1.287;SB=-1.603e+02;SOR=0.014;VQSLOD=4.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:337,0,492
1	28261593	rs3737809	T	C	715.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.384;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.945;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=-1.709;SB=-3.080e+02;SOR=0.487;VQSLOD=6.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:57,26:83:99:744,0,1616
1	28261600	rs3737808	A	C	741.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.886;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.24;ReadPosRankSum=-1.753;SB=-3.050e+02;SOR=0.543;VQSLOD=6.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:61,29:90:99:770,0,1718
1	28261658	.	T	TG	1207.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;DP=105;ExcessHet=3.0103;FS=5.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;RPA=1,2;RU=G;ReadPosRankSum=1.403;SB=-4.330e+02;SOR=1.204;STR;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:69,34:105:99:1245,0,2729
1	28268573	rs10902678	C	T	450.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.985;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=-2.383;SB=-8.000e+01;SOR=0.941;VQSLOD=8.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,17:31:99:479,0,455
1	28268706	rs4908341	G	A	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.918;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=0.109;SB=-4.380e+02;SOR=0.675;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,29:69:99:684,0,1162
1	28268833	rs62911860	C	CG	765.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.987;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.095;SB=-3.180e+02;SOR=0.573;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,21:56:99:803,0,1403
1	28268835	.	A	C	469.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.625;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.141;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.70;ReadPosRankSum=0.598;SB=-2.600e+02;SOR=0.420;VQSLOD=6.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,19:54:99:498,0,1014
1	28282819	rs4908381	T	C	766.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-1.553e+02;SOR=2.833;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:795,57,0
1	28290231	rs4373781	C	G	1158.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-1.473e+02;SOR=3.477;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:87:1187,87,0
1	28527011	rs1049504	A	G	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.629;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=0.881;SB=-2.840e+02;SOR=0.971;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,27:66:99:680,0,1021
1	28559574	rs510803	C	G	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.057;SB=-2.370e+02;SOR=0.856;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:501,0,516
1	28559694	rs474597	A	G	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=-0.201;SB=-7.597e+01;SOR=0.204;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:327,0,184
1	28562676	rs12154	A	G	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.452;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.918;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.284;SB=-1.020e+02;SOR=0.293;VQSLOD=7.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,9:23:99:232,0,424
1	28563084	rs2078348	C	T	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.039;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.723;SB=-4.176e+01;SOR=0.132;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:256,0,396
1	28564252	rs8559	A	G	550.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.011;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-0.347;SB=-2.310e+02;SOR=0.830;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,20:51:99:579,0,766
1	28564279	rs9508	A	G	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.431;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-0.059;SB=-3.940e+02;SOR=0.730;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,27:60:99:705,0,802
1	28573293	.	G	GA	351.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.51;MQ0=0;MQRankSum=3.632;POSITIVE_TRAIN_SITE;QD=9.77;RPA=11,12;RU=A;ReadPosRankSum=1.062;SB=-2.306e+01;SOR=0.588;STR;VQSLOD=2.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,17:38:99:389,0,337
1	28792072	rs139376744	G	C	283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.645;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=0.866;SB=0.00;SOR=0.693;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:312,0,285
1	28834045	rs146544479	C	G	238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.030;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4802;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=-1.250;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-0.935;SB=-2.601e+01;SOR=0.976;VQSLOD=3.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,9:27:99:267,0,445
1	28834052	rs140914793	T	G	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8141;MLEAC=1;MLEAF=0.500;MQ=58.10;MQ0=0;MQRankSum=-1.914;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=-0.970;SB=-1.765e+00;SOR=0.892;VQSLOD=2.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,8:23:99:231,0,475
1	29018316	rs200962078	TTTTA	T	742.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.32;RPA=11,10;RU=TTTA;ReadPosRankSum=0.665;SB=-1.100e+02;SOR=0.412;STR;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,16:49:99:780,0,276
1	29019724	rs4654365	G	A	754.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7192;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=0.00;SOR=6.091;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:783,60,0
1	29063559	rs6697540	A	C	723.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-2.800e+02;SOR=1.609;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:752,54,0
1	29070609	rs144677360	A	AG	639.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.31;SB=0.00;SOR=5.421;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:677,42,0
1	29138975	rs1042114	G	T	2119.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-5.120e+02;SOR=2.658;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2148,160,0
1	29185313	rs112411290	C	T	824.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.613;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5407;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=1.313;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=-0.142;SB=-2.050e+02;SOR=0.836;VQSLOD=3.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,29:47:99:853,0,491
1	29189597	rs2234918	C	T	2034.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.913;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.30;ReadPosRankSum=0.053;SB=-1.119e+03;SOR=0.341;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,64:65:99:2063,154,0
1	29439016	rs4654390	T	A	2027.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-1.190e+03;SOR=0.910;VQSLOD=6.40;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2056,147,0
1	29475341	rs2230678	C	T	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.162;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-0.444;SB=-6.700e+01;SOR=1.609;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:272,0,255
1	29475394	rs2230677	C	G	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=-0.723;SB=-3.200e+01;SOR=0.693;VQSLOD=9.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:118,0,241
1	29475648	rs2230679	T	G	1133.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-3.660e+02;SOR=2.179;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1162,84,0
1	29522384	rs2291611	G	A	368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.482;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-0.524;SB=-1.060e+02;SOR=0.776;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:397,0,427
1	29529699	rs1062924	T	C	2584.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8934;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-1.471e+03;SOR=0.959;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2613,190,0
1	29529943	rs12032476	C	T	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=-0.183;SB=0.00;SOR=0.330;VQSLOD=10.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:122,0,221
1	29533601	rs2452785	C	T	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-0.869;SB=0.00;SOR=0.340;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:193,0,313
1	29542435	rs2640469	C	G	888.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-2.361e+02;SOR=2.303;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:917,66,0
1	29542637	rs1128400	A	G	3088.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-1.886e+03;SOR=0.925;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3117,223,0
1	29557224	rs2640466	C	T	1007.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.79;SB=-4.800e+02;SOR=1.002;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1036,78,0
1	29563411	rs12041477	G	A	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.327;SB=-3.100e+01;SOR=1.179;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:341,0,392
1	29630455	rs2295061	C	T	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=5.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=0.233;SB=-2.501e+01;SOR=1.930;VQSLOD=6.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:99:138,0,151
1	29631236	rs10641752	C	CTA	1004.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;DB;DP=45;ExcessHet=3.0103;FS=6.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=-0.114;SB=-5.100e+02;SOR=0.211;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,21:45:99:1042,0,1117
1	29631782	rs2235935	C	T	460.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.296;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.252;SB=-2.901e+01;SOR=0.307;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,15:40:99:489,0,821
1	29631909	rs2235937	A	G	3987.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-2.344e+03;SOR=0.895;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4016,286,0
1	29633491	rs67244862	T	TCAGCC	390.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.31;RPA=2,3;RU=CAGCC;ReadPosRankSum=-0.346;SB=-1.764e+00;SOR=2.179;STR;VQSLOD=6.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,6:11:99:428,0,344
1	29637136	rs2235939	T	C	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=1.276;SB=0.00;SOR=0.446;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:164,0,234
1	29642318	rs2179795	G	T	146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.523;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=-0.806;SB=-4.176e+01;SOR=0.061;VQSLOD=7.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:175,0,383
1	29649874	rs10915252	T	C	544.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.044;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.908;SB=-2.060e+02;SOR=0.569;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:573,0,564
1	29652068	rs2076618	T	C	507.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.301;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.792;SB=-3.110e+02;SOR=0.340;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,21:38:99:536,0,407
1	29842261	rs10915168	A	T	464.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.812;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.20;ReadPosRankSum=-1.243;SB=0.00;SOR=3.912;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,13:14:39:493,39,0
1	31196255	rs45601237	G	A	569.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SB=-8.297e+01;SOR=3.383;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:598,45,0
1	31207781	rs10914189	C	T	829.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-3.560e+02;SOR=1.358;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:858,63,0
1	31346199	rs1539360	G	A	630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.79;ReadPosRankSum=0.972;SB=-2.980e+02;SOR=1.008;VQSLOD=6.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,27:81:99:659,0,1505
1	31406286	rs113408862	T	C	41.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.212;SB=-9.732e-01;SOR=0.446;VQSLOD=7.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,3:20:70:70,0,421
1	31406286	rs71826076	T	TAC	181.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.72;RPA=23,24;RU=AC;ReadPosRankSum=-1.242;SB=0.00;SOR=1.863;STR;VQSLOD=7.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,6:20:33:219,0,33
1	31413972	rs3795433	T	C	615.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.512;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.665;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=1.064;SB=-1.440e+02;SOR=0.278;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,20:46:99:644,0,856
1	31426815	rs2275741	A	G	790.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.712;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=6.113;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-0.110;SB=-1.740e+02;SOR=1.616;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:55:99:819,0,721
1	31440921	rs4317854	G	A	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.053;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=0.613;SB=0.00;SOR=0.793;VQSLOD=10.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:324,0,306
1	31445932	rs2491135	C	G	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.935;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.462;SB=-1.310e+02;SOR=0.256;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:315,0,349
1	31446099	.	T	TA	98.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.20;RPA=16,17;RU=A;ReadPosRankSum=0.381;SB=-1.611e+01;SOR=1.085;STR;VQSLOD=8.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:24:99:136,0,231
1	31478638	rs144492568	AAGAGAG	A	954.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.590;DB;DP=36;ExcessHet=3.0103;FS=5.029;MLEAC=1;MLEAF=0.500;MQ=60.30;MQ0=0;MQRankSum=1.185;POSITIVE_TRAIN_SITE;QD=14.04;RPA=16,13;RU=AG;ReadPosRankSum=0.208;SB=-2.960e+02;SOR=1.432;STR;VQSLOD=0.577;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,15:36:99:992,0,1119
1	31732602	rs59591825	CA	C	175.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;DB;DP=22;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.76;RPA=16,15;RU=A;ReadPosRankSum=-0.053;SB=-6.100e+01;SOR=1.627;STR;VQSLOD=5.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,14:22:58:213,0,58
1	31732892	rs2292165	G	A	860.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.158;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=0.377;SB=-4.940e+02;SOR=0.709;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,34:95:99:889,0,1663
1	31733721	rs71777720	A	AAAG	310.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;DB;DP=20;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.79;MQ0=0;MQRankSum=1.935;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=-0.469;SB=-9.732e-01;SOR=2.517;VQSLOD=0.069;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:20:99:348,0,227
1	31733926	rs12121460	A	G	2853.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-1.011e+03;SOR=1.739;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2882,208,0
1	31734033	rs35456520	CA	C	175.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=0.640;POSITIVE_TRAIN_SITE;QD=13.52;RPA=15,14;RU=A;ReadPosRankSum=-1.089;SB=-2.478e+01;SOR=1.473;STR;VQSLOD=3.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,11:19:17:213,0,17
1	31740640	rs12074417	A	G	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.325;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=1.596;SB=-1.120e+02;SOR=0.223;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:289,0,307
1	31740668	rs3753374	C	T	367.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.114;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-1.578;SB=-9.900e+01;SOR=0.941;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:396,0,350
1	31744168	rs3737755	G	A	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.191;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.76;ReadPosRankSum=0.083;SB=-5.900e+01;SOR=0.693;VQSLOD=9.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,8:26:99:178,0,598
1	31754511	rs4949374	G	C	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.834;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=-0.822;SB=-1.070e+02;SOR=0.473;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,16:25:99:460,0,305
1	31761936	rs7521463	T	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=-0.167;SB=0.00;SOR=0.582;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:235,0,282
1	31761989	rs1532859	G	A	885.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-1.503e+02;SOR=3.098;VQSLOD=5.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:69:914,69,0
1	31762374	rs1532858	C	T	1203.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=-6.890e+02;SOR=0.892;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:90:1232,90,0
1	31764693	rs12135540	G	A	152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.09;ReadPosRankSum=1.251;SB=-9.732e-01;SOR=0.784;VQSLOD=8.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,7:30:99:181,0,782
1	31764713	rs372600171	C	CAAG	562.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;DB;DP=40;ExcessHet=3.0103;FS=5.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.07;RPA=1,2;RU=AAG;ReadPosRankSum=0.059;SB=-2.657e-01;SOR=2.049;STR;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,12:40:99:600,0,1468
1	31764930	rs10733007	T	C	1705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-3.670e+02;SOR=2.790;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1734,129,0
1	31765968	rs1546375	C	T	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.498;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.540;SB=-2.050e+02;SOR=0.474;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:468,0,384
1	31792141	rs4949384	A	G	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=-0.920;SB=-1.765e+00;SOR=3.014;VQSLOD=6.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,10:15:99:352,0,123
1	31821972	rs76908476	C	T	356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=0.065;SB=0.00;SOR=1.911;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:385,0,102
1	31837174	rs3766294	C	G	147.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-0.079;SB=-3.876e+01;SOR=0.169;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:176,0,206
1	31838551	.	T	TA	110.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;RPA=18,19;RU=A;ReadPosRankSum=0.488;SB=0.00;SOR=0.836;STR;VQSLOD=9.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,7:17:83:148,0,83
1	31840426	rs2271072	C	G	903.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.252;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=-0.209;SB=-1.951e+02;SOR=0.105;VQSLOD=6.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,30:42:99:932,0,383
1	31842153	rs11578034	C	T	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.895;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.805;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-0.137;SB=-8.900e+01;SOR=0.368;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:529,0,589
1	31845686	rs2279885	C	G	762.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=15.448;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.187;SB=-3.294e+02;SOR=0.032;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,27:48:99:791,0,727
1	31882582	rs67428379	G	GGCCTCA	5217.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-2.605e+03;SOR=0.728;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:5255,172,0
1	31883295	rs6701521	T	C	1616.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-1.040e+03;SOR=0.767;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1645,117,0
1	31886101	rs34555734	G	C	266.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.68;SB=-1.483e+02;SOR=1.085;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:295,21,0
1	31886833	rs10914377	T	C	384.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-2.001e+02;SOR=1.022;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:413,30,0
1	31897643	rs2275437	G	A	471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.83;SB=-3.500e+02;SOR=0.793;VQSLOD=3.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:36:500,36,0
1	31899684	rs10454445	A	T	456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-1.125e+02;SOR=2.448;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:485,36,0
1	31899704	rs10454446	C	T	351.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-3.777e+01;SOR=3.442;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:380,30,0
1	31905730	rs7547845	T	C	524.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=0.00;SOR=5.421;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:553,42,0
1	31905889	rs33956499	A	ACAG	1907.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;DB;DP=86;ExcessHet=3.0103;FS=3.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.85;RPA=5,6;RU=CAG;ReadPosRankSum=0.304;SB=-9.300e+02;SOR=0.395;STR;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,38:86:99:1945,0,2058
1	31906882	rs11587589	A	G	1579.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-8.480e+02;SOR=0.776;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1608,123,0
1	31907102	rs7417775	A	G	486.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-1.433e+02;SOR=2.049;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:515,39,0
1	31973370	.	C	T	953.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.384;DP=60;Dels=0.00;ExcessHet=3.0103;FS=5.263;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.90;ReadPosRankSum=-0.285;SB=-4.400e+02;SOR=1.270;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,35:60:99:982,0,670
1	32044568	rs12750545	C	T	506.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=0.00;SOR=5.421;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:535,42,0
1	32044589	rs12736080	T	C	462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=-4.276e+01;SOR=4.174;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:491,36,0
1	32044595	rs12750558	C	G	577.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=0.00;SOR=4.294;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:606,45,0
1	32044607	rs28402919	G	C	686.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=34.34;SB=-4.276e+01;SOR=4.615;VQSLOD=5.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:715,54,0
1	32044609	rs28520749	G	A	663.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=31.61;SB=-3.677e+01;SOR=3.816;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:692,54,0
1	32044641	rs12753402	G	A	1065.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=30.45;SB=-3.090e+02;SOR=2.115;VQSLOD=2.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1094,81,0
1	32044925	rs79834674	G	T	1046.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=8.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=-0.320;SB=-1.550e+02;SOR=1.961;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,35:67:99:1075,0,861
1	32052145	rs45611233	G	A	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=0.511;SB=-3.400e+01;SOR=0.368;VQSLOD=8.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:89:89,0,213
1	32084904	rs1056526	C	T	1274.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.712;SB=-7.530e+02;SOR=0.783;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,53:110:99:1303,0,1576
1	32085485	rs11575883	G	A	189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.619;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=-2.166;SB=-1.905e+01;SOR=2.179;VQSLOD=5.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:23:99:218,0,466
1	32086912	rs2280386	A	C	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.291;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=1.677;SB=-3.100e+01;SOR=1.911;VQSLOD=6.27;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:282,0,194
1	32092525	rs2271933	A	G	421.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.189;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-0.925;SB=-2.390e+02;SOR=0.914;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:450,0,516
1	32092735	rs2176807	T	G	477.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.023;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.741;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=1.312;SB=-1.850e+02;SOR=0.287;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,19:33:99:506,0,420
1	32092918	rs5773367	T	TTCC	2004.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DB;DP=77;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=-0.744;SB=-9.570e+02;SOR=0.804;VQSLOD=4.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,36:77:99:2042,0,2279
1	32096265	rs1061770	A	G	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-0.389;SB=-4.276e+01;SOR=0.169;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:167,0,201
1	32099041	rs4949454	G	A	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.251;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-0.564;SB=0.00;SOR=0.784;VQSLOD=10.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:354,0,349
1	32100551	rs3835520	GA	G	669.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;DB;DP=53;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;RPA=5,4;RU=A;ReadPosRankSum=1.293;SB=-2.360e+02;SOR=0.538;STR;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,27:53:99:707,0,668
1	32119347	rs67961612	AACAC	A	959.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=2.406;POSITIVE_TRAIN_SITE;QD=14.69;RPA=14,12;RU=AC;ReadPosRankSum=-0.647;SB=-4.110e+02;SOR=0.594;STR;VQSLOD=3.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,21:56:99:997,0,1383
1	32119431	rs3817398	T	C	877.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.537;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=1.543;SB=-5.350e+02;SOR=0.646;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,32:71:99:906,0,1082
1	32122164	rs7545321	A	G	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=0.443;SB=0.00;SOR=0.859;VQSLOD=10.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:205,0,168
1	32126135	rs41263967	C	T	552.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.394;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.201;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-1.506;SB=-2.580e+02;SOR=1.519;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,24:48:99:581,0,627
1	32127911	rs2271927	C	T	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.784;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=18.340;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=0.793;SB=-1.640e+02;SOR=0.818;VQSLOD=3.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:402,0,202
1	32127953	rs2271928	G	A	416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=8.280;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=0.627;SB=-2.010e+02;SOR=0.948;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,16:22:99:445,0,184
1	32131163	rs1356803	C	G	1010.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.480;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=2.619;HaplotypeScore=3.4920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=-0.406;SB=-6.070e+02;SOR=0.661;VQSLOD=7.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:61,40:101:99:1039,0,1750
1	32133737	rs2292988	C	T	566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.369;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=1.091;SB=-1.420e+02;SOR=1.560;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,21:51:99:595,0,763
1	32134491	rs2271929	C	G	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.216;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=1.350;SB=-1.320e+02;SOR=0.273;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:220,0,150
1	32136168	rs2292990	G	C,T	844.77	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-2.770e+02;SOR=2.019;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,13,17:30:99:873,443,407,430,0,394
1	32136398	rs1474182	G	A	108.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.873;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.44;ReadPosRankSum=-1.403;SB=-3.000e+01;SOR=0.392;VQSLOD=9.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:99:137,0,451
1	32140733	rs2292993	C	T	1286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=6.727;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=1.043;SB=-7.880e+02;SOR=0.299;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,47:93:99:1315,0,1370
1	32145009	rs4949461	C	T	1490.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-7.890e+02;SOR=1.007;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1519,111,0
1	32146425	rs11590964	C	T	792.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-1.573e+02;SOR=2.737;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:821,60,0
1	32148571	rs10737358	A	G	2153.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-1.159e+03;SOR=1.085;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2182,166,0
1	32156869	rs10798884	A	T	3913.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-2.238e+03;SOR=0.845;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,125:126:99:3942,286,0
1	32156940	rs2297680	C	A	1217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.431;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=2.630;HaplotypeScore=4.2183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-0.330;SB=-4.770e+02;SOR=1.042;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,46:105:99:1246,0,1686
1	32157009	rs2297679	G	T	929.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.816;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-0.587;SB=-4.250e+02;SOR=0.581;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,35:94:99:958,0,1719
1	32158304	rs2297675	A	G	1798.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.862;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=2.833;HaplotypeScore=2.6219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.882;SB=-9.620e+02;SOR=0.934;VQSLOD=7.36;culprit=DP	GT:AD:DP:GQ:PL	0/1:82,73:155:99:1827,0,2088
1	32158374	rs3818788	T	C	1288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=1.641;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.914;SB=-5.390e+02;SOR=0.894;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,51:107:99:1317,0,1637
1	32159588	rs2275097	A	C	1704.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-7.970e+02;SOR=1.287;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1733,126,0
1	32160918	rs6656079	A	G	757.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.503;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-0.211;SB=-2.020e+02;SOR=0.777;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,27:64:99:786,0,992
1	32163950	rs2297674	G	C	1827.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.51;SB=-7.020e+02;SOR=1.179;VQSLOD=4.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1856,141,0
1	32164206	rs2228550	T	G	2402.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-7.240e+02;SOR=2.062;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2431,178,0
1	32165495	rs2228552	G	T	1317.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=-3.150e+02;SOR=2.554;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1346,99,0
1	32167526	rs1815465	G	C	2008.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-3.930e+02;SOR=2.683;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2037,150,0
1	32193647	rs1127100	T	C	375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-7.497e+01;SOR=2.670;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:404,30,0
1	32196647	rs909001	C	G	575.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=0.585;SB=-2.510e+02;SOR=1.159;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,21:34:99:604,0,320
1	32203163	rs2271931	C	G	1297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.765;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.245;SB=-6.970e+02;SOR=0.538;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,47:99:99:1326,0,1407
1	32207581	rs2297600	T	G	1710.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.966;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=3.525;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.440;SB=-9.460e+02;SOR=0.628;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,61:108:99:1739,0,1177
1	32221913	rs4949223	G	A	1642.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.659;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=3.770;HaplotypeScore=3.7747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.664;SB=-8.440e+02;SOR=0.371;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,58:104:99:1671,0,1269
1	32266026	rs552124	A	G	3037.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=-1.740e+03;SOR=1.094;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3066,229,0
1	32279629	rs6669563	G	A	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.460;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.92;ReadPosRankSum=0.459;SB=-5.800e+01;SOR=0.551;VQSLOD=9.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:87:87,0,353
1	32280369	rs35533335	G	A	825.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-0.744;SB=-4.540e+02;SOR=0.760;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,29:61:99:854,0,844
1	32280610	rs6664445	T	C	852.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.906;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.800;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-0.004;SB=-5.440e+02;SOR=0.457;VQSLOD=7.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,35:89:99:881,0,1415
1	32631714	rs201430785	T	C	444.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.024;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.139;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.59;ReadPosRankSum=1.309;SB=-9.100e+01;SOR=1.321;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,16:42:99:473,0,744
1	32657886	rs149864555	G	A	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-0.907;SB=-2.170e+02;SOR=0.884;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,17:43:99:470,0,678
1	32658062	rs55879873	G	GGT	1450.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.92;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;RPA=1,2;RU=GT;SB=-6.990e+02;SOR=0.826;STR;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:35:90:1488,90,0
1	32667609	rs1407134	C	T	1161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=4.759;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=-0.186;SB=-5.130e+02;SOR=1.137;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,41:71:99:1190,0,812
1	32671234	rs16834929	C	T	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.031;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=0.208;SB=-2.701e+01;SOR=1.352;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:292,0,456
1	32689857	rs589034	A	G	694.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.741;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=5.870;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-0.647;SB=-2.460e+02;SOR=1.240;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,22:52:99:723,0,812
1	32832292	rs2273376	A	G	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.086;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=0.889;SB=-9.101e+01;SOR=0.330;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:325,0,232
1	32860161	rs547329	T	C	1166.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-1.593e+02;SOR=3.611;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:90:1195,90,0
1	33060834	rs11327743	AT	A	280.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=48;ExcessHet=3.0103;FS=8.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.68;RPA=8,7;RU=T;ReadPosRankSum=0.557;SB=-7.504e+01;SOR=0.070;STR;VQSLOD=6.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,16:48:99:318,0,662
1	33065947	rs704886	G	C	2738.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-1.026e+03;SOR=1.845;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2767,199,0
1	33093316	.	G	A	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.18;ReadPosRankSum=0.411;SB=0.00;SOR=0.412;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:130,0,204
1	33117071	rs583114	T	G	414.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-1.603e+02;SOR=1.609;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:443,33,0
1	33133968	rs2762904	T	C	1415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-9.040e+02;SOR=0.823;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1444,102,0
1	33134774	rs359955	A	C	594.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-2.710e+02;SOR=1.508;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:623,48,0
1	33134989	rs359956	A	G	356.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.30;SB=-1.653e+02;SOR=1.244;VQSLOD=4.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:27:385,27,0
1	33138516	rs607202	A	C	1320.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-8.140e+02;SOR=0.788;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:96:1349,96,0
1	33138605	rs1320511	T	C	985.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-4.130e+02;SOR=1.542;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:72:1014,72,0
1	33147143	rs360510	C	T	654.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.46;SB=-7.297e+01;SOR=3.611;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:683,51,0
1	33160878	rs360042	C	T	2034.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-9.900e+02;SOR=1.179;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2063,150,0
1	33161212	rs360041	T	C	2254.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-1.169e+03;SOR=1.022;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2283,169,0
1	33231380	rs6694085	T	G	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-0.206;SB=-1.960e+02;SOR=0.657;VQSLOD=10.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:387,0,308
1	33231403	rs6702519	G	T	408.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.234;SB=-2.650e+02;SOR=0.582;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:437,0,375
1	33233323	rs360523	A	G	789.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-2.391e+02;SOR=2.215;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:818,60,0
1	33234128	rs3737992	G	A	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=1.795;SB=-7.300e+01;SOR=0.859;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:213,0,114
1	33234136	rs360522	T	C	385.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-1.115e+02;SOR=1.981;VQSLOD=6.31;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:30:414,30,0
1	33234153	rs3737993	G	A	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=-0.257;SB=-3.000e+01;SOR=0.631;VQSLOD=9.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:162,0,236
1	33235626	rs3737995	G	A	969.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.496;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-1.750;SB=-4.700e+02;SOR=0.618;VQSLOD=8.82;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:25,34:59:99:998,0,630
1	33246440	rs2282293	T	C	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.303;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-0.871;SB=-3.101e+01;SOR=0.776;VQSLOD=10.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:418,0,376
1	33256884	rs1765223	C	A	957.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.035;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=0.818;SB=-4.680e+02;SOR=1.035;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,39:91:99:986,0,1301
1	33276424	rs4951787	G	A	2547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-1.473e+03;SOR=0.770;VQSLOD=6.80;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2576,199,0
1	33293748	rs10753266	T	C	293.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-8.097e+01;SOR=2.303;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:322,24,0
1	33299816	rs4951773	A	T	1227.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.08;SB=-3.577e+01;SOR=5.610;VQSLOD=2.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:96:1256,96,0
1	33318561	rs702836	T	C	1574.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-5.430e+02;SOR=1.938;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1603,114,0
1	33318634	rs785274	G	A	2990.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-1.702e+03;SOR=1.029;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3019,220,0
1	33318868	rs67729924	C	CATTTGAGGTCAGGA	2088.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=64.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-7.894e+00;SOR=4.977;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:2126,42,0
1	33330432	rs1284368	A	G	1432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-4.540e+02;SOR=2.110;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1461,108,0
1	33359262	rs185706490	G	C	861.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.166;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=1.394;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=0.938;SB=-5.060e+02;SOR=0.468;VQSLOD=0.067;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,31:48:99:890,0,419
1	33364095	rs942242	C	T	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=1.465;SB=0.00;SOR=1.085;VQSLOD=10.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:184,0,118
1	33476292	rs74066439	A	G	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=0;MQRankSum=-2.744;QD=5.25;ReadPosRankSum=0.577;SB=0.00;SOR=0.180;VQSLOD=1.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:86:86,0,287
1	33497070	rs1012884	G	A	1383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-1.563e+02;SOR=3.967;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1412,105,0
1	33560338	rs804428	A	G	1406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-3.640e+02;SOR=2.356;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1435,105,0
1	33641932	rs604941	A	G	2190.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-7.830e+02;SOR=1.875;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2219,160,0
1	33642152	rs643402	C	T	1147.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-2.750e+02;SOR=2.649;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1176,87,0
1	33646950	rs622407	A	G	807.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-4.950e+02;SOR=0.765;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:836,60,0
1	33736288	rs140251313	G	A	954.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.864;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.424;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=-0.601;SB=-2.420e+02;SOR=1.091;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,33:48:99:983,0,349
1	33760743	rs4641276	T	C	1331.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-5.220e+02;SOR=1.714;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1360,99,0
1	33777524	rs6679416	T	C	367.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.692;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=0.891;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=1.670;SB=-3.500e+01;SOR=0.384;VQSLOD=3.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,13:32:99:396,0,594
1	33778226	rs12563102	G	A	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.21;ReadPosRankSum=-0.535;SB=-9.300e+01;SOR=0.490;VQSLOD=9.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,7:23:99:217,0,425
1	33778591	rs6664593	T	C	265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-0.131;SB=-1.020e+02;SOR=0.693;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:294,0,282
1	33795590	rs10914685	A	T	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.816;SB=-7.100e+01;SOR=0.646;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:279,0,198
1	33796834	rs34504596	GA	G	233.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DB;DP=16;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;RPA=2,1;RU=A;ReadPosRankSum=-1.498;SB=-4.876e+01;SOR=0.141;STR;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:16:99:271,0,322
1	33832865	rs6425816	A	G	511.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.454;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.850;SB=-2.750e+02;SOR=0.877;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:540,0,438
1	33832933	rs10914692	G	A	464.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.511;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.967;SB=-2.030e+02;SOR=0.859;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,19:36:99:493,0,426
1	33836796	rs7545416	C	G	593.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=-0.190;SB=-1.380e+02;SOR=0.822;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:622,0,643
1	33954469	rs3838985	AG	A	873.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;RPA=2,1;RU=G;SB=-4.576e+01;SOR=4.615;STR;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:21:60:911,60,0
1	33957130	rs3795419	C	A	1038.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.926;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=11.968;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.687;SB=-3.470e+02;SOR=1.707;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,36:74:99:1067,0,995
1	33957152	rs4403594	T	G	2245.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-1.227e+03;SOR=0.941;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2274,166,0
1	33959960	rs143516122	A	G	1546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=0.533;SB=-6.070e+02;SOR=0.699;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,51:93:99:1575,0,1239
1	33960062	rs9943259	A	G	2070.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.224e+03;SOR=0.787;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2099,160,0
1	33961147	rs3795420	T	G	671.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-8.297e+01;SOR=3.611;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:700,51,0
1	33985353	rs2641959	C	G	3916.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=-2.098e+03;SOR=1.034;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3945,298,0
1	33992812	rs111577457	C	T	1204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=2.529;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-1.053;SB=-8.550e+02;SOR=0.532;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,55:105:99:1233,0,1406
1	33998846	rs116604185	A	G	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.151;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.69;ReadPosRankSum=-0.955;SB=-8.100e+01;SOR=0.929;VQSLOD=7.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,11:40:99:256,0,743
1	33999174	rs35879676	GT	G	890.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=0.817;POSITIVE_TRAIN_SITE;QD=15.36;RPA=6,5;RU=T;ReadPosRankSum=1.403;SB=-2.290e+02;SOR=0.846;STR;VQSLOD=3.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,36:59:99:928,0,558
1	33999599	rs1532306	C	A	383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.505;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=-1.440;SB=-1.800e+02;SOR=0.559;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,21:38:99:412,0,492
1	33999657	rs1532307	T	C	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.197;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=1.124;SB=-2.004e+01;SOR=1.402;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:205,0,307
1	34002368	rs115574460	C	T	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.147;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=-0.980;SB=0.00;SOR=1.981;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:84:327,0,84
1	34008297	rs1000418	A	G	2742.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.48;SB=-4.120e+02;SOR=3.581;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2771,202,0
1	34008665	rs2078248	G	C	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.538;SB=0.00;SOR=0.425;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:231,0,356
1	34011533	rs10914742	C	T	513.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-2.700e+02;SOR=1.061;VQSLOD=2.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:542,39,0
1	34015796	rs61734268	G	C	760.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.346;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.222;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=0.711;SB=-2.380e+02;SOR=1.157;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:789,0,567
1	34023253	rs2641963	C	T	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=1.440;SB=0.00;SOR=1.609;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:95:213,0,95
1	34033060	rs11330003	GA	G	58.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.87;RPA=10,9;RU=A;ReadPosRankSum=0.200;SB=0.00;SOR=0.693;STR;VQSLOD=9.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,5:10:96:96,0,119
1	34033512	rs6703172	G	C	773.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=2.017;SB=-4.890e+02;SOR=0.760;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,29:51:99:802,0,630
1	34033636	rs66808281	G	A	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.989;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.820;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.571;SB=-5.100e+01;SOR=1.460;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:324,0,467
1	34034649	rs5007951	G	A	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-1.846;SB=0.00;SOR=0.693;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:201,0,186
1	34038214	rs2641962	T	C	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.983;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=-0.526;SB=-1.931e+02;SOR=0.318;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,20:27:99:557,0,181
1	34038413	rs2794602	A	C	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.547;SB=0.00;SOR=0.446;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:169,0,244
1	34043169	rs11291100	TC	T	1187.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;RPA=7,6;RU=C;SB=-5.040e+02;SOR=1.085;STR;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:36:99:1225,102,0
1	34046646	rs292808	C	A	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=0.233;SB=0.00;SOR=1.022;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:239,0,168
1	34052272	rs16835645	C	T	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.803;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=4.490;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.50;ReadPosRankSum=-0.491;SB=-2.290e+02;SOR=0.257;VQSLOD=6.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,19:57:99:342,0,1067
1	34052305	rs12727575	C	T	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.840;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.33;ReadPosRankSum=-0.407;SB=-2.103e+01;SOR=1.051;VQSLOD=7.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,10:36:99:256,0,714
1	34070826	rs12733436	G	A	196.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=-2.895;SB=0.00;SOR=1.022;VQSLOD=9.59;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:225,0,164
1	34071434	rs1874044	C	T	622.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.163;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.520;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=1.558;SB=-1.810e+02;SOR=1.150;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,23:54:99:651,0,838
1	34071525	rs1874045	C	T	722.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.615;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=11.931;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-0.911;SB=-3.730e+02;SOR=0.543;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,27:57:99:751,0,906
1	34082279	rs10914755	G	A	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.353;SB=0.00;SOR=0.784;VQSLOD=10.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:334,0,339
1	34189552	rs667892	C	T	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-1.037;SB=-4.076e+01;SOR=0.346;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:264,0,197
1	34189917	rs519370	C	T	760.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.056;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.070;HaplotypeScore=2.7407;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=1.141;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.864;SB=-2.260e+02;SOR=1.022;VQSLOD=0.197;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,30:67:99:789,0,1096
1	34189957	rs11346874	AG	A	1962.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.69;RPA=4,3;RU=G;SB=-3.650e+02;SOR=2.970;STR;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:53:99:2000,153,0
1	34190444	rs76533301	G	A	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.976;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-0.046;SB=0.00;SOR=0.264;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,10:29:99:309,0,678
1	34191973	rs77713334	C	G	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-2.189;SB=-3.500e+01;SOR=1.179;VQSLOD=9.51;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:98:189,0,98
1	34205134	rs12117137	C	T	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.767;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.188;SB=0.00;SOR=0.473;VQSLOD=10.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:192,0,254
1	34238283	rs474474	T	C	1317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=2.234;SB=-6.020e+02;SOR=0.606;VQSLOD=8.60;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1346,0,900
1	34270498	rs10737374	G	A	1696.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8930;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-9.180e+02;SOR=1.179;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1725,126,0
1	34276210	.	T	TA	136.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.22;RPA=10,11;RU=A;ReadPosRankSum=0.368;SB=-1.770e+00;SOR=1.214;STR;VQSLOD=8.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,9:23:99:174,0,265
1	34285342	rs17342512	G	A	722.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-1.198;SB=-3.340e+02;SOR=0.812;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,29:69:99:751,0,1138
1	34285381	rs11578857	C	T	943.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.383;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=2.902;HaplotypeScore=1.5115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-1.491;SB=-5.390e+02;SOR=0.428;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,40:83:99:972,0,1266
1	34285995	rs3795414	G	A	264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=7.471;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-0.310;SB=-1.850e+02;SOR=0.086;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:293,0,314
1	34329897	rs911218	T	C	1744.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-4.300e+02;SOR=2.480;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1773,129,0
1	34330067	rs10379	A	C	3944.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-2.085e+03;SOR=0.973;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3973,286,0
1	34631404	.	A	G	1068.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.994;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.25;ReadPosRankSum=1.297;SB=-3.410e+02;SOR=0.622;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,42:95:99:1097,0,1504
1	34663027	.	C	T	2197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.24;ReadPosRankSum=1.446;SB=-1.033e+03;SOR=0.689;VQSLOD=5.50;culprit=DP	GT:AD:DP:GQ:PL	0/1:90,76:166:99:2226,0,2582
1	34684463	rs705207	G	A	652.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-3.600e+02;SOR=1.179;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:681,48,0
1	35183838	rs683589	A	C	1072.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=-3.230e+02;SOR=2.093;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1101,81,0
1	35184033	rs693582	C	T	1729.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-5.900e+02;SOR=2.024;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1758,129,0
1	35184084	rs693852	C	T	972.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-1.533e+02;SOR=3.407;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1001,78,0
1	35184170	.	G	GT	213.75	PASS	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.72;RPA=1,2;RU=T;SB=0.00;SOR=4.407;STR;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:10:24:251,24,0
1	35227362	rs79193415	C	G	2300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.608;SB=-1.058e+03;SOR=0.710;VQSLOD=7.24;culprit=DP	GT:AD:DP:GQ:PL	0/1:94,78:172:99:2329,0,2629
1	35251161	rs35983826	C	T	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.058;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.345;SB=-1.620e+02;SOR=0.859;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,18:43:99:463,0,712
1	35251229	rs476220	G	A	264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.625;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-0.358;SB=-1.765e+00;SOR=1.022;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:293,0,485
1	35259961	.	A	G	1281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.433;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.695;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.93;ReadPosRankSum=0.562;SB=-7.130e+02;SOR=0.808;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,46:92:99:1310,0,1261
1	35260769	rs1764391	C	T	1423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.5894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.405;SB=-5.400e+02;SOR=0.908;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,55:108:99:1452,0,1261
1	35260929	rs3543	G	A	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=1.726;SB=-6.400e+01;SOR=0.804;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:302,0,456
1	35321684	.	A	AT	139.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;RPA=15,16;RU=T;ReadPosRankSum=0.494;SB=0.00;SOR=1.179;STR;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:16:75:177,0,75
1	35371124	.	G	A	66.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-0.908;SB=-5.700e+01;SOR=0.223;VQSLOD=8.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:95:95,0,181
1	35450702	.	G	T	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.05;ReadPosRankSum=-0.196;SB=-4.076e+01;SOR=0.793;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:389,0,119
1	35561510	rs2101973	G	A	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.933;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.227;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.56;ReadPosRankSum=0.619;SB=-2.080e+02;SOR=0.507;VQSLOD=7.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,14:41:99:338,0,647
1	35562965	rs2971408	G	A	1220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.828;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=1.823;SB=-5.540e+02;SOR=0.735;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,46:77:99:1249,0,701
1	35563206	rs6658571	C	G	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.737;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.17;ReadPosRankSum=-0.074;SB=-5.150e-01;SOR=1.609;VQSLOD=6.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:99:186,0,471
1	35576145	rs2935955	C	T	230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=-1.138;SB=-1.765e+00;SOR=1.802;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:259,0,234
1	35879522	TMP_ESP_1_35879522	CTCATGT	C	750.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.02;ReadPosRankSum=-0.402;SB=-8.776e+01;SOR=0.346;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:788,0,516
1	35925861	rs2819002	C	A	2106.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-9.960e+02;SOR=1.296;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2135,160,0
1	36203715	rs373826621	ATATAT	A	1021.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.418;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.65;ReadPosRankSum=1.209;SB=-1.712e+02;SOR=1.179;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,22:27:42:1059,42,0
1	36205166	rs577483	A	G	905.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.23;SB=-1.245e+02;SOR=3.442;VQSLOD=4.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:934,69,0
1	36213712	rs516992	G	T	1372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SB=-1.951e+02;SOR=3.611;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1401,105,0
1	36282417	rs2791960	A	G	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.3093;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=2.740;QD=16.71;ReadPosRankSum=-0.684;SB=-6.700e+01;SOR=1.609;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,28:34:31:563,0,31
1	36307412	.	CAT	C	726.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=0.645;POSITIVE_TRAIN_SITE;QD=27.95;RPA=13,12;RU=AT;ReadPosRankSum=1.551;SB=-3.246e+01;SOR=1.179;STR;VQSLOD=3.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,22:39:93:663,0,93
1	36316304	rs4233204	G	C	417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=0.00;SOR=4.977;VQSLOD=6.95;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:446,33,0
1	36316418	.	C	CA	1181.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.706;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.17;RPA=10,11;RU=A;ReadPosRankSum=-0.158;SB=-2.538e+02;SOR=1.569;STR;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:4,47:59:48:1219,48,0
1	36316571	rs4652895	A	C	6366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=222;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-3.873e+03;SOR=0.748;VQSLOD=3.56;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,222:222:99:6395,473,0
1	36367780	rs595961	A	G	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=1.700;SB=-2.230e+02;SOR=0.856;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:482,0,624
1	36372409	.	GA	G	175.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.17;RPA=17,16;RU=A;ReadPosRankSum=-0.851;SB=-3.901e+01;SOR=0.473;STR;VQSLOD=6.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,15:36:99:213,0,328
1	36501633	rs11312730	CA	C	95.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.671;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.99;RPA=21,20;RU=A;ReadPosRankSum=0.215;SB=0.00;SOR=2.670;STR;VQSLOD=0.589;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,10:12:16:133,0,16
1	36553673	rs399393	A	G	2854.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-1.507e+03;SOR=1.167;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2883,217,0
1	36554442	rs11263852	G	C	435.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.80;SB=0.00;SOR=5.136;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:36:464,36,0
1	36563158	rs3738360	C	A	1248.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-3.850e+02;SOR=2.133;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1277,96,0
1	36565584	rs274753	C	G	466.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-1.225e+02;SOR=2.448;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:495,36,0
1	36565617	rs274754	G	A	595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-2.361e+02;SOR=1.721;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:45:624,45,0
1	36565999	rs4652900	A	G	568.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=0.00;SOR=5.670;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:597,45,0
1	36602943	rs2231318	C	T	1554.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-3.870e+02;SOR=2.409;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1583,117,0
1	36603290	rs2231317	C	T	473.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-8.097e+01;SOR=2.985;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:502,39,0
1	36642420	rs475591	T	C	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-0.209;SB=-1.250e+02;SOR=0.859;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:333,0,402
1	36643700	rs141305015	GAGA	G	595.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQ0=0;MQRankSum=1.260;POSITIVE_TRAIN_SITE;QD=20.54;ReadPosRankSum=-0.820;SB=-2.810e+02;SOR=0.473;VQSLOD=3.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,12:29:99:633,0,995
1	36752152	rs2242428	C	T	1436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.449;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.735;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.563;SB=-7.590e+02;SOR=0.565;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,52:106:99:1465,0,1546
1	36752433	rs6425977	C	T	2969.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.811;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=4.114;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.30;ReadPosRankSum=1.697;SB=-1.388e+03;SOR=1.039;VQSLOD=4.22;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2998,189,0
1	36754467	rs6425978	G	C	870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-4.176e+01;SOR=4.892;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:899,66,0
1	36754522	rs6425979	C	A	1496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-6.260e+02;SOR=1.562;VQSLOD=3.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1525,111,0
1	36762396	rs1566589	C	T	967.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.46;SB=-5.850e+02;SOR=0.941;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:72:996,72,0
1	36766975	rs10908293	G	C	753.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-3.670e+02;SOR=0.892;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:782,57,0
1	36767400	rs882799	C	T	1323.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-3.950e+02;SOR=2.303;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1352,99,0
1	36773405	rs35343437	T	G	1395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.559;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=2.542;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-0.645;SB=-7.160e+02;SOR=0.970;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,55:103:99:1424,0,1344
1	36773819	rs11263871	C	G	2287.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=26.8649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-1.433e+03;SOR=0.887;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2316,169,0
1	36785270	rs2282431	C	T	633.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.633;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-0.283;SB=-2.660e+02;SOR=1.275;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,25:58:99:662,0,939
1	36788356	rs7536394	A	G	345.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-1.563e+02;SOR=1.445;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:374,27,0
1	36826969	.	A	C	1536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.416;DP=127;Dels=0.00;ExcessHet=3.0103;FS=1.423;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.10;ReadPosRankSum=1.530;SB=-9.350e+02;SOR=0.522;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:68,59:127:99:1565,0,1839
1	36881871	.	C	CTTT	262.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=0.566;QD=18.77;RPA=14,17;RU=T;ReadPosRankSum=1.537;SB=0.00;SOR=0.976;STR;VQSLOD=2.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:20:99:300,0,146
1	36883946	rs16822888	T	C	680.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.027;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.909;SB=-3.900e+02;SOR=0.492;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,30:63:99:709,0,826
1	36884473	rs57413616	A	G	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.687;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.869;SB=0.00;SOR=0.120;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,10:23:99:300,0,434
1	36884529	rs202052052	AG	A	708.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-1.177;QD=11.07;ReadPosRankSum=-0.711;SB=-1.860e+02;SOR=0.765;VQSLOD=1.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,26:64:99:746,0,1393
1	36884698	rs3738835	T	C	1110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.166;SB=-5.450e+02;SOR=0.681;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,46:87:99:1139,0,968
1	36886364	rs2275478	C	G	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=0.307;SB=-4.176e+01;SOR=0.622;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,13:19:99:361,0,189
1	36887702	rs2236565	C	T	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.391;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=8.648;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-1.245;SB=-1.120e+02;SOR=1.955;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,21:51:99:634,0,710
1	36887870	rs16822940	C	T	789.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.530;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.438;SB=-4.080e+02;SOR=0.765;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,30:54:99:818,0,630
1	36887965	rs16822942	T	C	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.710;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.141;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.427;SB=-6.700e+01;SOR=1.685;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:337,0,206
1	36888265	rs16822947	C	T	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.642;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-0.109;SB=0.00;SOR=1.244;VQSLOD=10.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:347,0,199
1	36888302	.	C	CT	663.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;DP=37;ExcessHet=3.0103;FS=6.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.44;RPA=13,14;RU=T;ReadPosRankSum=1.201;SB=-7.203e+01;SOR=2.517;STR;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,29:37:25:701,0,25
1	36888462	rs1416840	A	G	1164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.054;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.028;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=-0.564;SB=-6.210e+02;SOR=0.527;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,46:68:99:1193,0,584
1	36889005	rs16822954	G	A	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.390;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.675;HaplotypeScore=4.2950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.63;ReadPosRankSum=0.099;SB=-1.280e+02;SOR=1.193;VQSLOD=6.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,14:54:99:332,0,1075
1	36893968	rs61308377	A	G	712.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.354;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.612;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=0.543;SB=-2.770e+02;SOR=1.143;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:741,0,446
1	36897177	rs946680	A	G	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=-0.233;SB=-4.276e+01;SOR=0.093;VQSLOD=7.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:99:122,0,246
1	36898249	rs12563008	C	A	1137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.826;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=4.038;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=1.132;SB=-3.660e+02;SOR=0.285;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,41:72:99:1166,0,894
1	36898360	rs12566128	G	A	347.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.474;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.769;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=1.847;SB=-1.155e+02;SOR=0.160;VQSLOD=6.43;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,12:17:99:376,0,112
1	36904259	.	G	GA	386.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;DP=28;ExcessHet=3.0103;FS=4.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;RPA=1,2;RU=A;ReadPosRankSum=-0.353;SB=-1.250e+02;SOR=0.164;STR;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:424,0,655
1	36909567	rs3795495	G	A	1017.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.584;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-0.592;SB=-7.040e+02;SOR=0.711;VQSLOD=7.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:71,45:116:99:1046,0,1922
1	36913601	rs16823009	T	C	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.440;SB=-3.777e+01;SOR=0.096;VQSLOD=7.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:99:190,0,333
1	36915750	rs3079364	TAA	T	417.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.02;MQ0=0;MQRankSum=1.591;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=-0.599;SB=0.00;SOR=0.610;VQSLOD=3.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,10:21:99:455,0,541
1	36921227	rs2275479	A	G	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.128;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=5.454;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=1.178;SB=-1.120e+02;SOR=0.096;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:244,0,335
1	36921371	rs1538634	G	T	1281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.053;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=5.087;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-0.299;SB=-6.060e+02;SOR=0.343;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,50:111:99:1310,0,1711
1	36921533	rs2275480	A	G	1208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.761;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=4.360;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.146;SB=-3.100e+02;SOR=1.180;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,43:93:99:1237,0,1341
1	36926409	rs3738838	G	C	1095.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.231;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-0.809;SB=-7.630e+02;SOR=0.737;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,45:89:99:1124,0,1294
1	36926445	rs3738839	C	T	1138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.845;SB=-5.630e+02;SOR=0.704;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,44:85:99:1167,0,1024
1	36926461	rs3738840	C	T	775.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.088;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.940;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=0.653;SB=-3.280e+02;SOR=0.861;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,33:74:99:804,0,1133
1	36926853	rs2275476	G	A	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.745;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-0.113;SB=-1.620e+02;SOR=0.763;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:446,0,468
1	36926946	rs2275475	T	G	579.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.015;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.095;HaplotypeScore=2.5205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.894;SB=-2.930e+02;SOR=0.710;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:44:99:608,0,562
1	36927733	rs7065	G	A	1426.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=-8.070e+02;SOR=1.157;VQSLOD=5.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1455,105,0
1	36929533	rs2275474	G	A	769.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.787;SB=-2.980e+02;SOR=0.804;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:798,0,691
1	36929988	rs3806289	T	C	171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-1.469;SB=0.00;SOR=0.473;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:200,0,277
1	36939294	rs2275471	T	C	859.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=1.342;SB=-4.380e+02;SOR=0.604;VQSLOD=8.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,33:76:99:888,0,1159
1	36945307	rs3832027	AG	A	356.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;RPA=3,2;RU=G;ReadPosRankSum=1.755;SB=-1.764e+00;SOR=1.371;STR;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:28:99:394,0,512
1	37335458	rs577094	A	G	1426.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.773;DB;DP=107;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.121;SB=-2.720e+02;SOR=0.751;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,50:106:99:1455,0,1455
1	37335485	rs509284	A	G	1183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.607;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=4.646;HaplotypeScore=2.7876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.650;SB=-2.460e+02;SOR=0.258;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,39:80:99:1212,0,1247
1	37335494	rs577813	G	T	1069.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.713;HaplotypeScore=1.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=0.317;SB=-1.380e+02;SOR=0.307;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,36:70:99:1098,0,1109
1	37335551	rs3738085	G	A	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=1.218;SB=0.00;SOR=1.358;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,16:25:99:557,0,247
1	37626981	rs215756	T	C	281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=1.197;SB=0.00;SOR=0.941;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:310,0,234
1	37948212	rs215205	C	G	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.102;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.573;SB=-4.530e+02;SOR=0.903;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,32:75:99:944,0,1178
1	37959450	rs215210	T	C	3056.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-1.220e+03;SOR=1.751;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3085,238,0
1	37959470	rs215211	C	G	2765.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-9.780e+02;SOR=1.967;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2794,202,0
1	37959499	rs215212	G	C	779.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=4.464;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.487;SB=-2.760e+02;SOR=0.273;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,28:57:99:808,0,888
1	37961285	.	C	CA	145.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.56;MQ0=0;MQRankSum=-0.667;QD=5.40;RPA=12,13;RU=A;ReadPosRankSum=-0.176;SB=0.00;SOR=1.302;STR;VQSLOD=1.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,17:27:5:182,0,5
1	37975279	rs215214	C	T	1740.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-6.300e+02;SOR=1.739;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1769,135,0
1	37975312	rs2036637	T	C	1303.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-2.890e+02;SOR=2.494;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1332,99,0
1	37978773	rs4653296	T	C	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=1.434;SB=0.00;SOR=0.551;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:170,0,201
1	37978897	rs61779866	G	A	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.955;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=1.274;SB=-9.900e+01;SOR=0.873;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:593,0,699
1	38006359	rs2174769	A	G	435.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-1.245e+02;SOR=2.303;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:464,33,0
1	38018441	.	A	G	370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.977;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.45;ReadPosRankSum=-1.054;SB=-9.501e+01;SOR=0.307;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:24:99:399,0,290
1	38019747	rs2273013	C	T	289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=7.474;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.378;SB=-8.600e+01;SOR=1.447;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:318,0,285
1	38022452	rs2273014	C	A	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=-0.353;SB=0.00;SOR=0.368;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:157,0,291
1	38023316	rs11749	C	T	873.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.392;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=2.911;HaplotypeScore=3.5978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-0.472;SB=-5.370e+02;SOR=0.845;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,38:80:99:902,0,1111
1	38030696	rs6619	T	C	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.997;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.152;SB=-7.100e+01;SOR=0.208;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:405,0,626
1	38033047	rs2076519	T	G	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.138;SB=0.00;SOR=0.569;VQSLOD=10.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:201,0,232
1	38046920	rs2360010	G	T	1432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-3.740e+02;SOR=2.356;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1461,108,0
1	38049373	rs3753372	C	T	628.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=3.842;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-0.097;SB=-2.190e+02;SOR=1.325;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,25:57:99:657,0,948
1	38049552	rs6426024	C	G	2111.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-6.040e+02;SOR=2.235;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2140,154,0
1	38061572	rs6697632	G	T	874.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-4.276e+01;SOR=4.977;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:903,69,0
1	38078300	rs4652964	A	G	456.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.382;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=0.567;SB=-7.200e+01;SOR=0.409;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:485,0,488
1	38078630	rs55852308	A	T	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.082;SB=-1.300e+02;SOR=0.593;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:343,0,312
1	38079517	rs36043533	T	G	895.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.490;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=1.224;SB=-5.370e+02;SOR=0.684;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,32:54:99:924,0,557
1	38082122	rs12039431	G	A	894.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.615;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.711;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=-0.812;SB=-1.250e+02;SOR=1.172;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,32:63:99:923,0,948
1	38082123	rs12046650	C	T	973.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.456;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.711;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-0.784;SB=-1.530e+02;SOR=1.172;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,32:63:99:1002,0,942
1	38148765	rs684260	A	G	900.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.123;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=1.312;SB=-4.670e+02;SOR=0.759;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,31:54:99:929,0,536
1	38155699	rs4653319	T	G	190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=0.984;SB=-3.400e+01;SOR=1.863;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:61:219,0,61
1	38161694	rs615530	A	G	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.581;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.895;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=0.646;SB=-8.400e+01;SOR=1.532;VQSLOD=7.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,18:47:99:495,0,888
1	38164724	rs557290	C	G	754.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.684;SB=-2.130e+02;SOR=1.070;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,29:67:99:783,0,1024
1	38166022	rs513826	T	C	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.006;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=1.072;SB=-5.600e+01;SOR=0.321;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:264,0,404
1	38166327	rs661460	A	T	363.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.506;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=0.187;SB=-9.300e+01;SOR=1.911;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:392,0,220
1	38167345	.	T	TA	177.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;DP=33;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.13;RPA=16,17;RU=A;ReadPosRankSum=-0.599;SB=-7.454e+01;SOR=0.184;STR;VQSLOD=6.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,11:33:99:215,0,207
1	38173983	rs145033890	TTTC	T	1261.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=-0.871;SB=-3.930e+02;SOR=0.603;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,29:71:99:1299,0,2189
1	38174185	rs557897	G	T	645.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.814;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.899;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=0.582;SB=-3.620e+02;SOR=0.570;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,33:82:99:674,0,1349
1	38226964	rs55695553	C	T	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=0.637;SB=-3.400e+01;SOR=1.981;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:91:307,0,91
1	38272660	rs2291297	G	A	1190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.621;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=2.772;HaplotypeScore=3.4433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.908;SB=-4.890e+02;SOR=1.162;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,47:100:99:1219,0,1467
1	38289383	rs12751325	T	C	867.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.172;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.039;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.373;SB=-5.860e+02;SOR=0.420;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,38:70:99:896,0,914
1	38301250	rs3912368	A	G	455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.413;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=-0.565;SB=-8.800e+01;SOR=1.022;VQSLOD=7.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,18:48:99:484,0,847
1	38301476	rs3762359	G	A	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.22;ReadPosRankSum=-0.516;SB=-6.200e+01;SOR=0.674;VQSLOD=8.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,11:31:99:252,0,588
1	38327982	rs3843	G	T	385.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.500;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=-0.959;SB=-2.130e+02;SOR=0.368;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,18:41:99:414,0,621
1	38332057	.	T	TTC	509.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;DP=50;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;RPA=11,12;RU=TC;ReadPosRankSum=0.168;SB=-3.100e+01;SOR=1.147;STR;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,17:50:99:547,0,491
1	38332074	.	TCTCTCA	T	2340.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;DP=61;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.51;ReadPosRankSum=1.537;SB=-3.130e+02;SOR=1.329;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,34:61:99:2378,0,1281
1	38333984	.	CA	C	58.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.09;RPA=21,20;RU=A;ReadPosRankSum=0.368;SB=-1.514e+01;SOR=1.179;STR;VQSLOD=8.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,9:19:96:96,0,186
1	38338795	rs11488569	A	G	1045.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.144;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=15.064;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.518;SB=-1.350e+02;SOR=2.387;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,35:85:99:1074,0,1283
1	38341518	rs12752414	G	A	673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.23;SB=0.00;SOR=5.892;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:702,54,0
1	38345896	rs2306427	A	C	504.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.840;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=-1.338;SB=-1.060e+02;SOR=0.963;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:533,0,359
1	38352849	rs2279261	G	C	649.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=0.021;SB=-3.200e+02;SOR=0.777;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,20:31:99:678,0,289
1	38397341	rs34655914	G	A	347.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.527;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=12.499;HaplotypeScore=6.0688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-1.424;SB=-1.780e+02;SOR=0.932;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:35:99:376,0,555
1	38397369	rs35267671	C	T	491.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.538;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=10.736;HaplotypeScore=5.8058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.173;SB=-1.490e+02;SOR=1.456;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:36:99:520,0,491
1	38411350	rs11485595	C	T	763.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.979;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.931;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=-0.861;SB=-1.540e+02;SOR=1.230;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,24:44:99:792,0,549
1	38411445	rs871524	G	A	945.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=6.872;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-0.707;SB=-5.000e+02;SOR=0.942;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,37:64:99:974,0,708
1	38423853	rs9293	G	C	720.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-7.897e+01;SOR=3.716;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:749,54,0
1	38425629	.	CAAA	CA,C	637.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.538;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.78;MQ0=0;MQRankSum=-0.320;QD=24.53;RPA=21,19,18;RU=A;ReadPosRankSum=-0.320;SB=-7.379e+01;SOR=1.085;STR;VQSLOD=2.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,8,14:26:99:675,218,192,153,0,171
1	38425724	rs17531342	T	C	2204.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.2325;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.105e+03;SOR=1.276;VQSLOD=4.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:72:99:2233,163,0
1	38425895	rs28675056	T	C	1706.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-7.010e+02;SOR=1.697;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1735,132,0
1	38442547	rs10890216	G	A	1478.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-7.890e+02;SOR=0.883;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1507,111,0
1	38444749	rs7555461	T	C	498.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.883;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.710;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=-0.457;SB=-1.030e+02;SOR=1.262;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:527,0,419
1	38449910	rs11210870	T	C	1280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.647;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.820;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=3.119;SB=-4.480e+02;SOR=0.811;VQSLOD=6.94;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:53,47:100:99:1309,0,1435
1	38450367	rs6680796	A	G	549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=-3.280e+02;SOR=0.793;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:578,42,0
1	38453576	rs10890285	A	C	633.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.055;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.201;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=0.509;SB=-2.510e+02;SOR=1.106;VQSLOD=8.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,27:66:99:662,0,1035
1	38455389	rs3935867	C	T	1028.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-3.190e+02;SOR=2.165;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1057,81,0
1	38455891	rs4360494	G	C	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.89;ReadPosRankSum=0.831;SB=0.00;SOR=0.330;VQSLOD=8.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:115,0,230
1	38462898	rs4274021	T	A	1286.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-7.340e+02;SOR=0.941;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1315,99,0
1	38462905	rs12724533	C	G	1376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-7.200e+02;SOR=1.005;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1405,102,0
1	38463504	rs7366048	C	T	2210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=2.786;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-0.848;SB=-1.242e+03;SOR=0.608;VQSLOD=7.55;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,80:157:99:2239,0,2085
1	38464639	rs4570384	C	G	2990.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=-1.023e+03;SOR=2.033;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3019,217,0
1	38483498	rs12067225	A	G	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.529;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-1.544;SB=-9.600e+01;SOR=1.552;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:350,0,288
1	38484665	.	G	GT	146.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-1.478;QD=3.97;RPA=15,16;RU=T;ReadPosRankSum=0.848;SB=-1.906e+01;SOR=0.362;STR;VQSLOD=1.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,11:39:99:184,0,449
1	38554751	rs554916	T	C	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-1.834;SB=0.00;SOR=0.412;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:129,0,193
1	38554876	rs111227048	TG	T	1237.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=1.498;SB=-1.450e+02;SOR=0.527;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,45:89:99:1275,0,1829
1	38554879	rs58437512	G	T	1387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.526;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.92;ReadPosRankSum=1.776;SB=-1.980e+02;SOR=0.669;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,46:93:99:1416,0,1449
1	38555026	rs6671895	C	T	2359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.140;DB;DP=183;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-0.186;SB=-1.165e+03;SOR=0.728;VQSLOD=6.76;culprit=DP	GT:AD:DP:GQ:PL	0/1:93,90:183:99:2388,0,2692
1	38555083	rs531013	T	C	1341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.335;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.715;HaplotypeScore=9.6636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=-0.393;SB=-5.180e+02;SOR=0.908;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:75,59:134:99:1370,0,1924
1	39174686	.	G	A	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.38;ReadPosRankSum=0.319;SB=-4.076e+01;SOR=0.569;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:81:212,0,81
1	39330580	rs2147913	T	C	623.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.64;SB=0.00;SOR=5.670;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:652,48,0
1	39340607	rs16825625	A	G	1333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.728;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=1.652;SB=-5.250e+02;SOR=0.756;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,45:91:99:1362,0,1144
1	39385086	rs7522863	A	C	1064.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=-2.810e+02;SOR=2.448;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:78:1093,78,0
1	39468805	rs4147754	C	A	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.561;SB=0.00;SOR=0.693;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:288,0,300
1	39494760	rs3768322	G	A	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.562;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.60;ReadPosRankSum=0.847;SB=0.00;SOR=2.147;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:82:361,0,82
1	39550210	rs260972	C	T	482.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-3.577e+01;SOR=3.912;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:511,39,0
1	39717566	rs2490948	T	C	614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-3.580e+02;SOR=0.693;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:643,48,0
1	39748921	rs2275188	G	A	1357.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-4.470e+02;SOR=2.147;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1386,102,0
1	39749884	rs2039597	G	T	1538.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-8.670e+02;SOR=0.866;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1567,114,0
1	39763242	rs2275187	G	A	3394.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-1.593e+03;SOR=1.508;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3423,250,0
1	39766055	rs2275186	C	T	1449.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-4.310e+02;SOR=2.303;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1478,111,0
1	39796844	.	CTTTTTTTTTTT	C	1372.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.74;RPA=28,17;RU=T;ReadPosRankSum=0.366;SB=-1.262e+02;SOR=0.527;STR;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,12:18:22:1338,0,22
1	39806610	rs3116396	C	T	491.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-1.115e+02;SOR=2.584;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:520,39,0
1	39812620	rs2490944	G	T	3096.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-9.050e+02;SOR=2.229;VQSLOD=6.17;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3125,232,0
1	39812822	rs2761764	C	A	4301.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.14;SB=-1.949e+03;SOR=1.188;VQSLOD=5.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4330,316,0
1	39876851	.	T	G	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.663;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.256;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.21;ReadPosRankSum=0.946;SB=-2.140e+02;SOR=0.655;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,15:42:99:457,0,807
1	39900058	rs71798934	CT	C	224.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.09;RPA=17,16;RU=T;ReadPosRankSum=0.137;SB=-3.800e+01;SOR=0.527;STR;VQSLOD=6.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,22:57:99:262,0,677
1	39924960	.	C	T	626.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.093;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.91;ReadPosRankSum=-1.673;SB=-6.000e+01;SOR=1.402;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,22:35:99:655,0,397
1	39927507	rs783820	G	A	1266.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4085;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-3.500e+02;SOR=2.419;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1295,99,0
1	39929240	rs7554206	T	C	1213.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-5.210e+02;SOR=1.609;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:41:90:1242,90,0
1	39957913	rs4660269	A	G	1786.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-1.052e+03;SOR=0.986;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1815,135,0
1	39958080	rs10888798	C	G	782.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;SB=-2.101e+02;SOR=2.124;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:811,60,0
1	39988084	rs6525	G	A	1255.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=2;POSITIVE_TRAIN_SITE;QD=30.63;SB=-1.971e+02;SOR=3.202;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:42:99:1284,102,0
1	39988318	rs59170117	T	TTTG	454.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=28.67;RPA=5,6;RU=TTG;SB=0.00;SOR=4.615;STR;VQSLOD=4.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:22:27:492,27,0
1	39989327	rs1727098	C	T	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-1.205e+02;SOR=1.609;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
1	40092089	rs2695320	T	C	1376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-6.120e+02;SOR=1.280;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1405,102,0
1	40096053	rs1148945	T	C	1058.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-1.205e+02;SOR=3.981;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:87:1087,87,0
1	40098328	rs784625	T	C	4271.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-2.676e+03;SOR=0.735;VQSLOD=5.24;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4300,316,0
1	40130993	rs12406284	T	C	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.299;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.40;ReadPosRankSum=1.320;SB=0.00;SOR=0.193;VQSLOD=9.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:154,0,389
1	40131829	rs369485627	G	A	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=11.390;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.344;SB=-2.400e+02;SOR=0.838;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,20:46:99:560,0,803
1	40137754	rs2871601	G	A	1196.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.92;SB=-4.276e+01;SOR=5.610;VQSLOD=2.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1225,93,0
1	40149515	rs784633	A	G	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=1.532;SB=-4.176e+01;SOR=0.223;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:192,0,161
1	40149642	rs784634	G	T	758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.821;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.469;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-0.267;SB=-4.000e+02;SOR=0.357;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,30:70:99:787,0,1137
1	40149870	rs113763288	C	G	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=61.94;MQ0=0;MQRankSum=-1.097;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-1.637;SB=0.00;SOR=0.551;VQSLOD=2.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:135,0,208
1	40149875	rs113459798	C	T	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=62.13;MQ0=0;MQRankSum=-1.085;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-2.260;SB=0.00;SOR=0.527;VQSLOD=2.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:10:99:129,0,173
1	40150156	rs9662128	G	A	449.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-0.106;SB=-2.350e+02;SOR=0.527;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:478,0,263
1	40204424	rs7548120	A	T	129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-1.443;SB=0.00;SOR=0.446;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:158,0,233
1	40207169	rs497333	T	G	1071.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.571;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=18.575;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.764;SB=-1.490e+02;SOR=2.808;VQSLOD=4.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,34:66:99:1100,0,833
1	40214525	rs7520588	T	A	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.617;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.741;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.164;SB=-5.400e+01;SOR=1.387;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:375,0,536
1	40219065	rs1046988	C	T	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=6.089;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=-0.045;SB=-8.639e+00;SOR=2.081;VQSLOD=6.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,13:49:99:355,0,1056
1	40226046	rs12094291	G	A	350.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.460;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=0.711;SB=-1.330e+02;SOR=0.573;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:379,0,472
1	40313849	rs1333742	T	C	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.186;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.906;HaplotypeScore=2.7188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.385;SB=-6.400e+01;SOR=1.609;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:373,0,345
1	40319587	rs2294814	A	C	928.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.146;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.032;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=2.103;SB=-3.970e+02;SOR=0.908;VQSLOD=7.90;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:25,34:59:99:957,0,637
1	40349131	rs3845570	G	A	463.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.552;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=6.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-1.226;SB=-1.840e+02;SOR=1.396;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:492,0,573
1	40363054	rs3134614	G	C	1615.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-5.710e+02;SOR=1.863;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1644,120,0
1	40430907	rs115805986	C	T	713.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.350;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=7.438;HaplotypeScore=2.6732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.696;SB=-4.300e+02;SOR=0.134;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,27:42:99:742,0,392
1	40433771	rs3103778	A	G	1466.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-7.020e+02;SOR=1.105;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1495,117,0
1	40526003	rs3122419	T	C	993.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-8.097e+01;SOR=4.332;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:1022,75,0
1	40533266	rs11207440	T	G	594.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-1.553e+02;SOR=2.179;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:623,45,0
1	40533287	rs6665926	T	G	540.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1972;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.46;SB=-1.593e+02;SOR=1.609;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:569,45,0
1	40533315	rs6665933	T	G	600.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.12;SB=-1.573e+02;SOR=0.963;VQSLOD=4.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:629,48,0
1	40533320	rs6665936	T	G	643.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=-1.523e+02;SOR=0.963;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:51:672,51,0
1	40533326	rs6665937	T	G	624.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.0398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-1.175e+02;SOR=1.230;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:23:48:653,48,0
1	40533347	rs6665944	T	G	793.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-2.820e+02;SOR=0.846;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:60:822,60,0
1	40535787	rs199672929	G	A	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-0.200;SB=0.00;SOR=0.693;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:169,0,148
1	40536074	rs145821853	C	CT	4419.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=25.07;SB=-2.221e+03;SOR=0.758;VQSLOD=2.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:4457,280,0
1	40540023	.	TTC	T	274.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQ0=0;MQRankSum=0.140;QD=30.53;RPA=2,1;RU=TC;ReadPosRankSum=0.282;SB=-4.676e+01;SOR=1.609;STR;VQSLOD=3.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,8:10:24:312,0,24
1	40545964	rs3122428	T	G	945.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.365;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.852;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=1.109;SB=-3.930e+02;SOR=0.591;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,35:88:99:974,0,1450
1	40546065	.	T	C	1691.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;DP=115;Dels=0.00;ExcessHet=3.0103;FS=2.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.953;SB=-1.111e+03;SOR=0.499;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,66:115:99:1720,0,1306
1	40555274	rs6689837	C	G	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.799;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-0.329;SB=-6.400e+01;SOR=1.193;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:320,0,364
1	40556922	rs3122439	T	C	2284.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.11;SB=-1.266e+03;SOR=0.910;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2313,169,0
1	40556942	rs56654546	A	T	1109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=0.855;SB=-5.210e+02;SOR=0.556;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,37:65:99:1138,0,719
1	40557656	rs6672053	G	A	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.074;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=1.318;SB=-8.097e+01;SOR=0.144;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:25:99:408,0,334
1	40558256	rs4481840	C	G	536.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SB=0.00;SOR=5.421;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:565,42,0
1	40562712	.	C	G	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.76;ReadPosRankSum=0.251;SB=-1.290e+02;SOR=0.340;VQSLOD=6.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,16:45:99:362,0,843
1	40562993	rs6600313	T	C	563.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=0.00;SOR=5.549;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:592,45,0
1	40688132	rs16827064	C	T	199.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.771;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.562;SB=0.00;SOR=0.582;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:228,0,245
1	40735817	rs16827109	T	G	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.441;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.955;SB=-3.200e+01;SOR=1.314;VQSLOD=10.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:353,0,308
1	40737516	rs6677717	T	G	1024.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.481;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.16;ReadPosRankSum=0.231;SB=-1.135e+02;SOR=2.517;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,29:30:78:1053,78,0
1	40769783	rs77695700	G	A	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=1.189;SB=-9.900e+01;SOR=0.495;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:205,0,224
1	40771994	rs2281399	G	C	563.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=9.678;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.868;SB=-7.700e+01;SOR=2.303;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,20:48:99:592,0,667
1	40773149	rs2228564	T	C	514.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.466;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.673;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-0.112;SB=-2.220e+02;SOR=0.232;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:543,0,376
1	40773289	rs2075560	C	T	403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.117;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=10.490;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.73;ReadPosRankSum=-1.896;SB=-1.160e+02;SOR=1.815;VQSLOD=6.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,18:60:99:432,0,1159
1	40773514	rs75996151	G	T	442.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=0.141;SB=-2.511e+02;SOR=0.941;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,16:18:37:471,0,37
1	40774081	rs72944918	C	T	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.696;SB=0.00;SOR=0.569;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:184,0,244
1	40776513	rs72944928	C	T	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.263;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.819;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-0.283;SB=-1.550e+02;SOR=1.274;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,18:43:99:504,0,682
1	40777800	rs1979785	T	G	47.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=3.4667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.81;ReadPosRankSum=0.694;SB=-1.417e+01;SOR=1.049;VQSLOD=5.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:76:76,0,407
1	40777804	rs78091688	T	C	46.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=3.4667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.75;ReadPosRankSum=0.189;SB=-1.041e+01;SOR=1.049;VQSLOD=5.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:75:75,0,412
1	40777842	rs209918	A	G	107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.906;HaplotypeScore=5.3946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.31;ReadPosRankSum=-1.241;SB=-4.500e+01;SOR=1.282;VQSLOD=6.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,6:25:99:136,0,549
1	40777884	.	C	CT	45.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.18;RPA=15,16;RU=T;ReadPosRankSum=0.585;SB=-1.514e+01;SOR=0.859;STR;VQSLOD=8.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,6:25:83:83,0,272
1	40778377	rs1983658	C	T	317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.829;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=1.057;SB=-1.300e+02;SOR=1.122;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:346,0,265
1	40778567	rs72944930	C	T	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=6.264;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-0.914;SB=-1.205e+02;SOR=0.061;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:177,0,138
1	40779841	rs2273195	G	T	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-0.496;SB=-1.765e+00;SOR=1.473;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:340,0,345
1	40781177	rs115504008	A	C	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.775;HaplotypeScore=3.6248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-0.102;SB=-4.000e+01;SOR=1.352;VQSLOD=5.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,7:29:99:207,0,583
1	40879808	rs209605	G	C,T	1112.77	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-5.420e+02;SOR=1.179;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,18,20:38:99:1141,602,560,539,0,491
1	40881041	rs209606	C	G	3878.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-2.222e+03;SOR=0.806;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,130:131:99:3907,292,0
1	40882900	.	CT	C	231.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.14;RPA=19,18;RU=T;ReadPosRankSum=0.478;SB=-6.346e+01;SOR=0.643;STR;VQSLOD=7.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,22:70:99:230,0,514
1	40955156	rs10789144	A	T	1373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-7.720e+02;SOR=0.784;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1402,105,0
1	41101572	rs2253835	A	G	837.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-1.653e+02;SOR=3.098;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:69:866,69,0
1	41107239	rs7535398	G	A	624.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-3.976e+01;SOR=4.407;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:653,51,0
1	41107360	rs491619	T	C	2174.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4402;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-8.800e+02;SOR=1.512;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2203,160,0
1	41204569	rs1057925	C	T	927.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-4.660e+02;SOR=1.284;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:956,72,0
1	41215075	rs3818758	T	A	1244.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-3.600e+02;SOR=2.179;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1273,96,0
1	41228898	rs4660454	G	A	441.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-1.921e+02;SOR=1.022;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:470,36,0
1	41235177	rs10889608	G	C	552.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-1.583e+02;SOR=2.419;VQSLOD=3.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:581,42,0
1	41235946	rs3754176	G	A	1224.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-3.540e+02;SOR=2.115;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:96:1253,96,0
1	41284366	rs2361660	G	C	610.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-2.670e+02;SOR=1.292;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:639,48,0
1	41284406	rs2361659	A	G	532.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.11;SB=-7.497e+01;SOR=3.126;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:561,42,0
1	41285087	rs4660468	T	C	1183.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-7.390e+02;SOR=0.693;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1212,90,0
1	41296828	rs34287852	T	G	773.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.019;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.734;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=-0.266;SB=-3.700e+02;SOR=0.188;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:802,0,571
1	41298510	rs874847	G	A	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=-0.752;SB=0.00;SOR=1.112;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:307,0,195
1	41298546	.	G	GC	930.73	PASS	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;RPA=4,5;RU=C;SB=0.00;SOR=6.518;STR;VQSLOD=7.25;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,25:25:75:968,75,0
1	41298652	rs913378	T	C	2416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-1.230e+03;SOR=1.058;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2445,178,0
1	41327407	rs116373577	G	A	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.777;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.77;ReadPosRankSum=-0.908;SB=-6.200e+01;SOR=0.804;VQSLOD=8.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:15:99:123,0,259
1	41453286	rs5773721	GT	G	1413.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.58;RPA=2,1;RU=T;SB=-2.241e+02;SOR=3.258;STR;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:35:99:1451,102,0
1	41456808	.	C	CT	95.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;DP=45;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.18;RPA=14,15;RU=T;ReadPosRankSum=1.485;SB=-5.455e+00;SOR=1.112;STR;VQSLOD=5.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,10:45:99:133,0,654
1	41540853	rs2011981	A	T	2039.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-5.190e+02;SOR=2.129;VQSLOD=4.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2068,154,0
1	41540861	rs2011982	T	C	2392.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-8.220e+02;SOR=1.949;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2421,175,0
1	41618442	rs213768	A	T	1389.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-2.351e+02;SOR=3.145;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1418,108,0
1	41848060	rs12092825	C	T	572.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=0.00;SOR=5.670;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:601,48,0
1	41848296	rs4359027	G	A	3073.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=-1.819e+03;SOR=1.008;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3102,229,0
1	41949595	rs2759256	G	A	1511.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-5.950e+02;SOR=1.559;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1540,114,0
1	41949628	rs2759257	A	C	705.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.118;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=1.721;SB=-2.630e+02;SOR=0.697;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,27:70:99:734,0,1171
1	41950312	rs2984691	T	C	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-0.640;SB=-1.350e+02;SOR=0.892;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:238,0,291
1	41976017	rs678110	C	T	1669.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.83;SB=-6.770e+02;SOR=1.460;VQSLOD=6.39;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1698,123,0
1	41976328	rs9439043	T	C	544.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-2.471e+02;SOR=1.244;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:573,42,0
1	41978825	rs2483689	C	G	2312.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-8.680e+02;SOR=1.609;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2341,175,0
1	41979156	rs615177	A	G	615.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.648;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.641;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-0.374;SB=-2.400e+02;SOR=1.406;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:644,0,320
1	41983912	rs2810547	C	A	1735.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3391;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-6.970e+02;SOR=1.238;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1764,132,0
1	42041479	rs1815257	A	C	662.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-0.887;SB=-4.400e+02;SOR=0.527;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,27:57:99:691,0,797
1	42045302	rs2810564	G	A	1010.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-2.341e+02;SOR=2.468;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1039,78,0
1	42046812	rs2810565	C	T	1160.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-4.190e+02;SOR=1.802;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:38:90:1189,90,0
1	42047300	rs41269473	A	T	727.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.642;HaplotypeScore=3.9398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=-0.597;SB=-3.530e+02;SOR=0.266;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,26:43:99:756,0,521
1	42048745	rs2810566	T	C	2107.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-1.276e+03;SOR=0.814;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2136,160,0
1	42049032	rs2984694	G	A	1158.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-6.380e+02;SOR=0.927;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:37:90:1187,90,0
1	42049140	rs2475842	C	G	1764.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-7.380e+02;SOR=1.524;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1793,129,0
1	42050366	rs2146315	C	T	585.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.325;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=0.256;SB=-2.430e+02;SOR=1.179;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,22:58:99:614,0,987
1	42619139	rs1047047	A	G	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-1.197;SB=-2.080e+02;SOR=0.836;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:380,0,277
1	42619152	rs2297567	C	A	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.680;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.590;SB=-1.920e+02;SOR=1.112;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:375,0,393
1	42619377	rs2297566	G	A	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.041;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.180;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.613;SB=-2.402e+01;SOR=2.428;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:260,0,281
1	42621170	rs80206942	G	C	1557.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.346;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=1.457;HaplotypeScore=4.5602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-0.175;SB=-8.900e+02;SOR=0.560;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,61:118:99:1586,0,1472
1	42629040	rs2232224	A	G	3530.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-1.415e+03;SOR=1.609;VQSLOD=4.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:113:99:3559,259,0
1	42654364	rs554500	G	A	1558.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-5.150e+02;SOR=2.030;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1587,117,0
1	42656868	rs1085252	C	G	696.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=0.00;SOR=5.892;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:725,54,0
1	42693597	rs343376	A	G	2120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=3.784;HaplotypeScore=3.7041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=1.143;SB=-1.293e+03;SOR=0.610;VQSLOD=7.00;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,79:151:99:2149,0,1904
1	42730525	rs617824	T	C	459.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.75;SB=0.00;SOR=5.136;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:488,36,0
1	42744438	.	G	A	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.406;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.141;SB=-4.076e+01;SOR=0.148;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:277,0,300
1	42776699	.	G	GA	213.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=33;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.48;RPA=11,12;RU=A;ReadPosRankSum=1.367;SB=-5.800e+01;SOR=1.276;STR;VQSLOD=5.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,12:33:99:251,0,444
1	42880516	rs1055055	T	C	3092.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.759;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=4.305;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.56;ReadPosRankSum=1.680;SB=-1.375e+03;SOR=1.198;VQSLOD=4.10;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:1,97:98:99:3121,207,0
1	42880841	rs35585609	T	TCA	802.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;RPA=1,2;RU=CA;SB=-1.010e+02;SOR=3.258;STR;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:17:48:840,48,0
1	42880866	rs2484436	G	A	438.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=0.00;SOR=5.136;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:467,36,0
1	42898843	rs1034268	A	G	1017.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.761;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=4.635;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.549;SB=-4.550e+02;SOR=0.340;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,38:83:99:1046,0,1229
1	42901082	rs3748845	A	C	866.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.554;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.025;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.429;SB=-3.030e+02;SOR=0.845;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,30:60:99:895,0,771
1	42901173	rs4660634	C	T	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=-1.193;SB=-4.176e+01;SOR=0.412;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:315,0,202
1	42915753	rs11210647	T	C	1141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.873;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=4.269;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-0.920;SB=-5.230e+02;SOR=0.344;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,42:96:99:1170,0,1547
1	42939021	rs3748846	C	G	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=0.790;SB=-3.500e+01;SOR=0.922;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:534,0,394
1	42948562	rs202122677	GA	G	85.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=24;ExcessHet=3.0103;FS=5.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.73;RPA=12,11;RU=A;ReadPosRankSum=1.712;SB=-2.657e-01;SOR=2.712;STR;VQSLOD=4.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:24:99:123,0,347
1	42948585	rs6656344	C	A	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=5.869;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.537;SB=-5.150e-01;SOR=2.910;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:290,0,434
1	42956001	rs72659920	G	A	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=-0.431;SB=0.00;SOR=0.223;VQSLOD=8.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:94:94,0,244
1	42962800	rs3748841	A	T	656.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.362;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-0.119;SB=-3.460e+02;SOR=0.985;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,28:47:99:685,0,543
1	42965989	rs61591226	C	G	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.30;ReadPosRankSum=0.000;SB=-9.200e+01;SOR=0.569;VQSLOD=9.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:129,0,370
1	42966037	rs2992346	T	C	446.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.28;SB=-2.850e+02;SOR=1.061;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:36:475,36,0
1	43002347	rs72659956	A	G	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.190;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.894;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-0.936;SB=-3.210e+02;SOR=0.805;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,35:83:99:944,0,1262
1	43002358	rs72659958	A	G	710.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.090;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=4.698;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=1.339;SB=-8.300e+01;SOR=1.570;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,24:64:99:739,0,1142
1	43002744	rs4660643	G	A	795.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.493;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-1.546;SB=-1.670e+02;SOR=0.815;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,29:60:99:824,0,926
1	43008131	rs72659969	G	A	301.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-8.297e+01;SOR=2.303;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:330,24,0
1	43021810	rs12038786	C	T	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.503;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-0.142;SB=-6.800e+01;SOR=0.425;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:235,0,398
1	43076654	rs16829795	C	T	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.549;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5909;MLEAC=1;MLEAF=0.500;MQ=59.98;MQ0=0;MQRankSum=-0.765;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=-1.077;SB=-1.990e+02;SOR=0.471;VQSLOD=3.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,24:40:99:611,0,446
1	43076884	rs114541061	A	G	1055.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.020;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=5.254;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=1.398;SB=-5.840e+02;SOR=0.247;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,41:68:99:1084,0,709
1	43108188	rs12036818	G	A	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.361;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.155;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.210;SB=-2.600e+02;SOR=0.518;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,17:31:99:519,0,313
1	43110276	rs7523056	G	A	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.693;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.461;SB=0.00;SOR=0.693;VQSLOD=10.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:331,0,340
1	43111741	rs16829824	G	A	384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=1.9577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.489;SB=-6.500e+01;SOR=1.387;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:413,0,368
1	43124220	rs3820545	G	A	653.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.490;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=0.812;SB=-2.730e+02;SOR=1.242;VQSLOD=7.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,27:67:99:682,0,1219
1	43124701	rs6600419	A	G	1284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.622;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=10.579;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=0.917;SB=-1.340e+02;SOR=2.076;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,40:74:99:1313,0,981
1	43124859	rs3738494	C	T	478.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.450;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.667;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=0.340;SB=-1.450e+02;SOR=1.127;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,17:45:99:507,0,908
1	43131653	rs12244	G	A	1299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-1.312;SB=-7.730e+02;SOR=0.641;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,52:101:99:1328,0,1283
1	43132320	rs140898882	G	A	720.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.026;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=-0.476;SB=-3.130e+02;SOR=1.035;VQSLOD=7.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,29:74:99:749,0,1130
1	43166409	rs138700771	GAGA	G	1302.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;DB;DP=71;ExcessHet=3.0103;FS=3.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=1.596;SB=-6.550e+02;SOR=0.349;VQSLOD=7.21;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:46,25:71:99:1340,0,2704
1	43201534	rs4660658	G	A	265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.608;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.678;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.82;ReadPosRankSum=-2.021;SB=-1.310e+02;SOR=0.269;VQSLOD=6.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,13:34:99:294,0,738
1	43212431	rs4660662	A	G	1523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-6.170e+02;SOR=1.659;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1552,114,0
1	43212869	rs3738496	A	T	1152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.469;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=4.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=0.513;SB=-5.500e+02;SOR=0.713;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:66,44:110:99:1181,0,1862
1	43213103	rs3738498	A	C	993.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.999;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=-1.068;SB=-5.560e+02;SOR=1.040;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1022,0,880
1	43213499	rs3738499	C	T	796.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.183;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=5.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-0.222;SB=-2.400e+02;SOR=1.426;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,31:64:99:825,0,891
1	43213610	rs7552138	T	C	499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-3.577e+01;SOR=3.767;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:528,39,0
1	43213797	rs3738500	A	G	743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.159;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=-0.083;SB=-1.010e+02;SOR=0.788;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,25:48:99:772,0,675
1	43215930	rs11581921	C	T	1490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-0.033;SB=-8.640e+02;SOR=0.633;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:77,60:137:99:1519,0,2201
1	43216183	rs11576228	A	G	146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-1.778;SB=-1.765e+00;SOR=1.911;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:175,0,138
1	43221187	rs3738502	C	T	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.087;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-0.474;SB=-1.640e+02;SOR=0.606;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,17:42:99:511,0,713
1	43227867	rs2760070	G	A	640.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.11;SB=0.00;SOR=5.784;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:669,51,0
1	43228189	rs2816593	T	A	2009.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=-6.000e+02;SOR=2.147;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2038,157,0
1	43239395	rs2760075	G	A	1228.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-4.980e+02;SOR=1.775;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:93:1257,93,0
1	43279094	rs323714	T	C	689.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-4.470e+02;SOR=0.859;VQSLOD=4.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:51:718,51,0
1	43279148	rs3738512	G	C	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.482;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.199;SB=-1.850e+02;SOR=0.446;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:308,0,172
1	43300663	rs4660672	T	C	153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-1.025;SB=-7.100e+01;SOR=0.495;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:182,0,141
1	43300921	rs4660673	C	G	926.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-3.240e+02;SOR=2.019;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:69:955,69,0
1	43302574	.	T	TA	227.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.728;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.53;RPA=16,17;RU=A;ReadPosRankSum=-0.938;SB=-5.897e+01;SOR=1.473;STR;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:13:15:265,15,0
1	43356765	rs10789430	T	C	639.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-2.890e+02;SOR=1.402;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:668,48,0
1	43418026	rs2297972	C	T	1569.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.811;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=6.040;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.512;SB=-5.680e+02;SOR=1.241;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,54:113:99:1598,0,1615
1	43610910	rs626842	T	G	1110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.974;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=2.613;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.753;SB=-6.760e+02;SOR=0.432;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,46:104:99:1139,0,1514
1	43613786	rs519666	G	T	727.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=7.346;HaplotypeScore=28.2447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.398;SB=-2.230e+02;SOR=1.659;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,28:61:99:756,0,776
1	43613850	.	C	CA	247.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.53;RPA=5,6;RU=A;ReadPosRankSum=1.739;SB=-2.702e+01;SOR=0.430;STR;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:33:99:285,0,380
1	43613859	rs61776912	T	C	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.139;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=1.670;SB=-3.400e+01;SOR=0.481;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:26:99:380,0,429
1	43616646	rs16830421	C	T	633.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.083;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=-1.088;SB=0.00;SOR=1.179;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,20:33:99:662,0,379
1	43629957	rs1804822	G	A	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.124;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.63;ReadPosRankSum=0.804;SB=-2.501e+01;SOR=1.508;VQSLOD=8.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:124,0,304
1	43630156	rs11559311	A	C	705.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.149;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.004;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.088;SB=-3.990e+02;SOR=0.846;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,31:57:99:734,0,746
1	43630315	rs11559312	T	A	643.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-1.994;SB=-2.240e+02;SOR=0.719;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,27:63:99:672,0,1046
1	43630541	rs61776916	C	A	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-0.414;SB=-5.900e+01;SOR=0.358;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:436,0,571
1	43632353	rs1749436	C	G	87.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.49;ReadPosRankSum=0.121;SB=0.00;SOR=0.138;VQSLOD=9.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:116,0,442
1	43632354	rs1749437	A	C	88.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.304;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.55;ReadPosRankSum=0.182;SB=0.00;SOR=0.138;VQSLOD=9.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:117,0,410
1	43638436	rs6695238	G	T	1035.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.851;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.399;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.953;SB=-5.170e+02;SOR=0.352;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,41:75:99:1064,0,949
1	43649508	rs663824	A	G	1024.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.161;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=1.150;SB=-4.360e+02;SOR=0.667;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,37:72:99:1053,0,985
1	43650741	rs598336	T	C	510.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.879;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.475;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.475;SB=-2.460e+02;SOR=0.382;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:539,0,359
1	43652369	rs6413971	T	C	1019.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6196;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-4.490e+02;SOR=1.675;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:37:75:1048,75,0
1	43663376	rs513009	A	G	2042.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-6.950e+02;SOR=2.019;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2071,154,0
1	43664119	rs603560	A	G	366.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.639;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=-0.029;SB=-9.400e+01;SOR=0.382;VQSLOD=7.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,14:39:99:395,0,825
1	43664218	rs603123	C	T	788.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.088;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.96;ReadPosRankSum=1.177;SB=-5.370e+02;SOR=0.711;VQSLOD=8.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:53,35:89:99:817,0,1450
1	43664319	rs10711519	TA	T	375.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.09;RPA=10,9;RU=A;ReadPosRankSum=0.164;SB=-9.800e+01;SOR=0.713;STR;VQSLOD=8.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,21:62:99:413,0,793
1	43672636	rs11210812	T	G	648.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=0.204;SB=-1.820e+02;SOR=0.551;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,22:29:99:677,0,164
1	43675467	rs2453412	G	A	3057.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;DB;DP=244;Dels=0.00;ExcessHet=3.0103;FS=0.988;HaplotypeScore=11.6795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-0.650;SB=-1.647e+03;SOR=0.782;VQSLOD=4.85;culprit=DP	GT:AD:DP:GQ:PL	0/1:127,117:244:99:3086,0,3356
1	43680855	rs4233492	G	A	1464.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=-2.600e+02;SOR=3.056;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1493,111,0
1	43681184	rs612626	C	T	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.615;SB=-6.800e+01;SOR=0.392;VQSLOD=8.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:263,0,422
1	43697968	rs3120045	G	A	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.697;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=0.878;SB=-8.700e+01;SOR=1.402;VQSLOD=7.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,9:25:99:265,0,415
1	43699813	rs3820588	A	G	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=1.279;SB=0.00;SOR=1.112;VQSLOD=10.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:325,0,186
1	43699935	rs2477561	C	T	2923.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-8.270e+02;SOR=2.383;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2952,220,0
1	43700140	rs2483688	A	G	1404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=1.496;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-0.098;SB=-7.270e+02;SOR=0.514;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,54:117:99:1433,0,1598
1	43771016	rs3831248	TA	T	4716.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;RPA=3,2;RU=A;SB=-2.022e+03;SOR=1.093;STR;VQSLOD=6.42;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,116:121:99:4754,349,0
1	43771090	rs3120044	G	A	2172.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-4.610e+02;SOR=2.904;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2201,163,0
1	43773033	rs2275180	A	G	2098.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-6.910e+02;SOR=1.942;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2127,154,0
1	43774437	rs1467809	G	A	542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-2.710e+02;SOR=1.292;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:571,42,0
1	43774495	rs2282225	G	C	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=7.144;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.215;SB=-1.860e+02;SOR=0.976;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,16:24:99:409,0,223
1	43777852	rs1999595	C	T	1225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.947;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=-0.057;SB=-4.890e+02;SOR=0.786;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,42:77:99:1254,0,919
1	43779564	rs3120276	T	C	1347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-5.540e+02;SOR=1.402;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1376,102,0
1	43779869	rs2991990	T	G	1649.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-8.190e+02;SOR=1.067;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1678,123,0
1	43782846	rs1198982	G	A	1170.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-1.811e+02;SOR=3.383;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1199,93,0
1	43786721	rs77603098	A	C	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.58;ReadPosRankSum=-0.755;SB=0.00;SOR=1.609;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:84:244,0,84
1	43787437	rs11210834	A	G	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.809;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.528;SB=0.00;SOR=0.387;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:323,0,543
1	43826312	rs710251	C	A	2256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.377;DB;DP=188;Dels=0.00;ExcessHet=3.0103;FS=3.327;HaplotypeScore=6.5241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.077;SB=-1.272e+03;SOR=0.501;VQSLOD=6.69;culprit=DP	GT:AD:DP:GQ:PL	0/1:101,87:188:99:2285,0,2966
1	43855578	rs839753	G	C	898.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.235;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.860;SB=-3.830e+02;SOR=0.430;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,32:65:99:927,0,957
1	43907092	rs12407785	G	A	1196.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.979;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.706;HaplotypeScore=4.5958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=1.346;SB=-5.990e+02;SOR=0.923;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,46:91:99:1225,0,1202
1	43916642	rs6954	T	C	1363.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.231;SB=-6.370e+02;SOR=0.711;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,48:100:99:1392,0,1480
1	43998397	rs11350891	GT	G	826.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.56;RPA=7,6;RU=T;SB=-2.390e+02;SOR=2.019;STR;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:36:90:864,90,0
1	44019731	rs2842185	C	T	1100.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=0.00;SOR=6.869;VQSLOD=3.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1129,90,0
1	44044468	rs11210874	C	T	1003.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.235;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.023;SB=-2.510e+02;SOR=0.730;VQSLOD=9.72;culprit=SOR	GT:AD:DP:GQ:PL	0/1:52,33:85:99:1032,0,1434
1	44056462	rs2117315	T	C	533.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.584;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.681;HaplotypeScore=2.7880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.739;SB=-1.890e+02;SOR=0.209;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:562,0,551
1	44057257	rs2304353	A	G	498.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.728;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.744;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=-1.845;SB=-1.640e+02;SOR=0.340;VQSLOD=7.35;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,18:30:99:527,0,339
1	44057629	rs201946505	G	C	832.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.070;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-0.968;SB=-3.810e+02;SOR=1.119;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,35:81:99:861,0,1135
1	44057668	rs7540068	G	T	708.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.394;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.388;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=1.164;SB=-1.770e+02;SOR=1.202;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,28:67:99:737,0,1093
1	44057696	rs7553297	A	G	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.561;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-0.052;SB=-1.090e+02;SOR=1.101;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,19:41:99:557,0,634
1	44057950	rs573350	T	C	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.864;SB=0.00;SOR=0.446;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:169,0,231
1	44058034	rs2117316	G	A	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.034;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=7.647;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-0.040;SB=-1.400e+02;SOR=0.086;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:405,0,556
1	44058265	rs3828151	C	A	771.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.851;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.044;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-0.520;SB=-3.610e+02;SOR=0.490;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,31:62:99:800,0,773
1	44064319	rs17849103	A	G	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-0.222;SB=-1.090e+02;SOR=0.551;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:297,0,237
1	44067859	rs12023161	A	G	1430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-0.864;SB=-7.380e+02;SOR=0.661;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,56:106:99:1459,0,1337
1	44071221	rs631248	G	A	969.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.114;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=6.159;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.016;SB=-5.080e+02;SOR=0.284;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,36:75:99:998,0,1087
1	44071853	rs512579	T	C	289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.761;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.210;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-1.259;SB=-4.176e+01;SOR=0.080;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,11:29:99:318,0,656
1	44072018	rs1065772	C	T	1518.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=9.766;HaplotypeScore=2.7569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-0.117;SB=-6.320e+02;SOR=1.344;VQSLOD=4.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:70,55:125:99:1547,0,1884
1	44072066	rs10890266	C	T	1866.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=13.502;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-0.311;SB=-9.730e+02;SOR=0.561;VQSLOD=3.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:73,70:143:99:1895,0,1999
1	44072420	rs539096	A	G	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-1.140;SB=-1.090e+02;SOR=0.593;VQSLOD=10.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:256,0,164
1	44075227	rs517622	T	C	1262.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-2.341e+02;SOR=3.202;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1291,102,0
1	44078359	rs3791149	T	A	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.30;ReadPosRankSum=0.170;SB=-2.402e+01;SOR=0.804;VQSLOD=9.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:129,0,286
1	44078384	rs499257	T	C	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.100;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-1.388;SB=-6.700e+01;SOR=1.022;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:20:99:250,0,280
1	44079411	rs603542	T	C	1240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=9.785;HaplotypeScore=1.8646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=1.042;SB=-5.520e+02;SOR=0.142;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,49:80:99:1269,0,884
1	44083015	rs653953	G	A	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.880;SB=-1.765e+00;SOR=1.609;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:130,0,215
1	44083110	rs571862	C	T	678.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.593;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=1.667;SB=-2.370e+02;SOR=0.723;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,26:48:99:707,0,676
1	44083507	rs641365	T	C	1173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-0.290;SB=-7.800e+02;SOR=0.952;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,50:96:99:1202,0,1177
1	44083519	rs641351	G	A	1075.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.451;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-0.697;SB=-6.640e+02;SOR=0.725;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,45:87:99:1104,0,1244
1	44084739	rs1143701	C	T	1280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.814;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-0.695;SB=-8.520e+02;SOR=0.575;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,53:88:99:1309,0,870
1	44086080	rs568639	T	C	1038.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.872;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-0.513;SB=-4.050e+02;SOR=0.892;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,37:83:99:1067,0,1221
1	44086831	rs1143702	C	T	1557.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.617;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-0.625;SB=-9.340e+02;SOR=0.816;VQSLOD=6.66;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,66:149:99:1586,0,2291
1	44087496	rs673485	C	T	791.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.105;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.143;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=2.390;SB=-2.640e+02;SOR=0.477;VQSLOD=7.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,29:60:99:820,0,984
1	44119038	.	A	AT	420.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.26;RPA=7,8;RU=T;ReadPosRankSum=0.301;SB=-5.100e+01;SOR=0.892;STR;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,19:47:99:458,0,483
1	44125962	rs3215843	CA	C	432.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;RPA=5,4;RU=A;ReadPosRankSum=-1.232;SB=-1.310e+02;SOR=0.522;STR;VQSLOD=7.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,20:56:99:470,0,1050
1	44137257	rs586339	C	A	714.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.307;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.903;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=0.389;SB=-4.110e+02;SOR=0.551;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,28:75:99:743,0,1427
1	44280381	rs37468	A	T	886.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-1.205e+02;SOR=3.528;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:915,66,0
1	44280425	rs3791064	T	G	572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.262;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.385;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.249;SB=-1.350e+02;SOR=1.007;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,19:41:99:601,0,600
1	44323736	rs2906465	T	C	1429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-4.680e+02;SOR=1.880;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1458,105,0
1	44344796	rs2527777	T	C	1255.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-7.700e+02;SOR=0.743;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1284,93,0
1	44395786	rs2108202	C	T	1483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.335;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=1.384;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.527;SB=-7.060e+02;SOR=0.822;VQSLOD=7.54;culprit=DP	GT:AD:DP:GQ:PL	0/1:82,54:136:99:1512,0,2343
1	44401342	rs201734412	T	C	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-0.465;SB=-2.670e+02;SOR=0.793;VQSLOD=6.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,19:63:99:474,0,1238
1	44401384	rs2242637	A	G	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.358;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.564;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.81;ReadPosRankSum=0.429;SB=-1.960e+02;SOR=0.387;VQSLOD=7.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,17:54:99:342,0,1130
1	44415415	rs2240447	C	T	2767.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;DB;DP=224;Dels=0.00;ExcessHet=3.0103;FS=2.985;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.173;SB=-1.646e+03;SOR=0.525;VQSLOD=5.13;culprit=DP	GT:AD:DP:GQ:PL	0/1:119,105:224:99:2796,0,3154
1	44426025	rs2301993	G	A	1559.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.758;HaplotypeScore=2.5873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=1.286;SB=-8.470e+02;SOR=0.846;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,54:99:99:1588,0,1162
1	44426948	rs2906596	G	A	319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.502;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.124;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=0.420;SB=-1.990e+02;SOR=0.307;VQSLOD=7.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,14:34:99:348,0,544
1	44432500	rs4660759	C	G	842.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.539;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=7.965;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=1.256;SB=-9.400e+01;SOR=2.165;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,27:51:99:871,0,607
1	44442521	rs12410334	A	C	1089.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.612;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-1.258;SB=-3.310e+02;SOR=0.678;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,39:86:99:1118,0,1350
1	44455871	rs2231284	T	C	1240.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.97;SB=-1.483e+02;SOR=3.611;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1269,93,0
1	44457305	rs12403036	G	A	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.891;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.293;SB=-6.100e+01;SOR=1.609;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,12:27:99:326,0,389
1	44459318	.	CA	C	102.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=-1.245;QD=3.42;RPA=18,17;RU=A;ReadPosRankSum=-0.691;SB=-1.709e+01;SOR=0.735;STR;VQSLOD=1.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:33:99:140,0,343
1	44461615	rs142384645	G	A	837.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.816;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=4.310;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-1.507;SB=-3.280e+02;SOR=1.201;VQSLOD=7.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:56,31:87:99:866,0,1528
1	44466606	rs2248632	G	A	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.388;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.436;SB=-3.040e+02;SOR=0.869;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,23:53:99:610,0,756
1	44468235	rs2248829	G	A	603.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.058;SB=-2.730e+02;SOR=0.646;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,22:42:99:632,0,522
1	44475586	rs1766967	G	A	481.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.618;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-0.314;SB=-1.370e+02;SOR=0.627;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:510,0,532
1	44595047	rs11210969	T	A	1537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=3.934;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=-0.196;SB=-4.650e+02;SOR=1.193;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,54:105:99:1566,0,1331
1	44595113	rs2429051	G	C	4083.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9152;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-1.935e+03;SOR=1.197;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4112,301,0
1	44595410	rs2485652	A	G	1717.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.185;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=8.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-0.333;SB=-8.760e+02;SOR=0.850;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,61:122:99:1746,0,1753
1	44595426	rs2429050	G	A	1672.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.357;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=9.770;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.762;SB=-8.470e+02;SOR=0.912;VQSLOD=4.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,60:123:99:1701,0,1798
1	44595995	.	G	GC	859.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQ0=0;MQRankSum=1.540;QD=13.43;RPA=6,7;RU=C;ReadPosRankSum=-0.747;SB=-5.900e+01;SOR=0.572;STR;VQSLOD=1.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,30:70:99:897,0,1015
1	44679556	rs803369	A	G	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.269;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.419;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=-0.859;SB=-2.440e+02;SOR=0.826;VQSLOD=7.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,18:50:99:469,0,806
1	44681113	rs1291169	T	C	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-0.973;SB=-4.276e+01;SOR=0.132;VQSLOD=7.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,6:13:99:154,0,243
1	44684995	rs2799480	T	C	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.938;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=1.883;SB=-1.660e+02;SOR=0.502;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,18:51:99:563,0,961
1	44788398	rs161721	A	T	1882.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-9.940e+02;SOR=0.960;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1911,138,0
1	45088629	rs28453885	G	A	196.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=2.091;SB=-6.800e+01;SOR=0.473;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:225,0,321
1	45101478	rs2236219	T	C	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=2.450;SB=-3.401e+01;SOR=1.179;VQSLOD=9.71;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:216,0,120
1	45102355	rs34296911	T	C	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.581;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-0.613;SB=-3.200e+01;SOR=2.215;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:322,0,204
1	45115149	rs3738733	G	C	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.996;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=-1.338;SB=0.00;SOR=0.846;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:490,0,412
1	45121045	rs11211020	T	C	492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-4.176e+01;SOR=4.047;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:521,42,0
1	45166513	rs2355710	T	A	421.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.589;SB=-3.000e+01;SOR=0.927;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:450,0,547
1	45170012	rs12088087	A	G	912.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.823;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=6.794;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=-0.956;SB=-1.290e+02;SOR=1.772;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,30:59:99:941,0,640
1	45205598	rs3820586	T	C	1010.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=1.488;SB=-6.160e+02;SOR=0.601;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,42:104:99:1039,0,1694
1	45215905	rs67742332	T	G	119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=0.713;SB=-1.765e+00;SOR=1.371;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:148,0,247
1	45216038	rs12566610	C	G	783.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.128;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-0.205;SB=-2.400e+02;SOR=0.941;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,27:56:99:812,0,755
1	45223901	rs111920953	TATTAGCTG	T	2972.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.89;RPA=2,1;RU=ATTAGCTG;ReadPosRankSum=0.837;SB=-8.040e+02;SOR=0.734;STR;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,30:86:99:3010,0,3729
1	45224007	rs3795714	G	T	362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.417;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.288;SB=-9.200e+01;SOR=0.793;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,13:32:99:391,0,578
1	45224757	rs16832228	G	A	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.714;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.29;ReadPosRankSum=-2.064;SB=0.00;SOR=0.197;VQSLOD=8.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:99:174,0,455
1	45224998	rs4342887	A	C	1909.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=10.127;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=1.057;SB=-1.237e+03;SOR=0.690;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,71:134:99:1938,0,1659
1	45226084	rs1140279	G	A	2469.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.110;DB;DP=187;Dels=0.00;ExcessHet=3.0103;FS=3.320;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=0.337;SB=-1.418e+03;SOR=0.935;VQSLOD=7.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:90,97:187:99:2498,0,2164
1	45241113	rs11211031	T	C	547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=1.476;SB=-7.300e+01;SOR=1.101;VQSLOD=9.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,18:26:99:576,0,245
1	45241285	rs12120833	C	G	765.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.625;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=14.029;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-0.850;SB=-2.800e+02;SOR=1.390;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,27:61:99:794,0,984
1	45244051	.	T	TG	507.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DP=48;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.04;RPA=1,2;RU=G;ReadPosRankSum=0.633;SB=-1.620e+02;SOR=1.204;STR;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,15:48:99:545,0,1244
1	45266832	rs17881698	A	G	954.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.724;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.771;HaplotypeScore=24.4845;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=-0.032;SB=-2.010e+02;SOR=1.291;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,32:61:99:983,0,571
1	45267395	rs142337193	C	T	391.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.704;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-0.087;SB=-2.070e+02;SOR=0.971;VQSLOD=6.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,17:43:99:420,0,779
1	45269217	.	C	T	1358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.765;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-0.569;SB=-7.400e+02;SOR=0.546;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,49:98:99:1387,0,1347
1	45270024	rs11211036	G	C	1801.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.297;SB=-8.700e+02;SOR=0.721;VQSLOD=7.34;culprit=DP	GT:AD:DP:GQ:PL	0/1:83,68:151:99:1830,0,2194
1	45271097	rs17883049	G	A	1422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.976;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-0.403;SB=-7.200e+02;SOR=0.675;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,50:91:99:1451,0,1150
1	45271912	rs17886118	G	A	961.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=2.437;SB=-3.780e+02;SOR=0.580;VQSLOD=8.37;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,36:65:99:990,0,800
1	45291908	rs11211040	G	A	2102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.583;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=1.324;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-0.181;SB=-1.011e+03;SOR=0.833;VQSLOD=7.72;culprit=DP	GT:AD:DP:GQ:PL	0/1:68,82:150:99:2131,0,1767
1	45293518	rs7525308	A	G	1052.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.189;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-1.784;SB=-5.320e+02;SOR=0.713;VQSLOD=8.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,35:71:99:1081,0,1091
1	45293752	rs2295997	T	C	896.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.956;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.516;SB=-5.030e+02;SOR=0.533;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,31:63:99:925,0,777
1	45294156	rs2273940	T	C	781.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.132;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.678;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-1.287;SB=-4.560e+02;SOR=0.327;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,29:46:99:810,0,563
1	45297753	rs2295999	A	G	1059.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-1.115;SB=-6.950e+02;SOR=0.667;VQSLOD=8.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,42:91:99:1088,0,1341
1	45307506	rs3795720	G	A	1901.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.430;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=2.137;HaplotypeScore=2.5885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-1.104;SB=-1.223e+03;SOR=0.498;VQSLOD=7.64;culprit=DP	GT:AD:DP:GQ:PL	0/1:66,75:141:99:1930,0,1752
1	45308409	rs6696675	G	A	476.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.243;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.66;ReadPosRankSum=-0.180;SB=-2.210e+02;SOR=0.754;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,18:27:99:505,0,198
1	45340282	rs9988451	C	T	1067.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.996;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=-0.205;SB=-2.110e+02;SOR=0.380;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,35:52:99:1096,0,427
1	45362992	rs263978	T	C	1097.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-3.300e+02;SOR=2.049;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1126,81,0
1	45443894	rs2487367	T	C	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=-1.165;SB=0.00;SOR=1.473;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:355,0,148
1	45444038	rs11556200	G	A	766.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.941;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=-1.825;SB=-5.000e+02;SOR=0.472;VQSLOD=7.69;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:43,31:74:99:795,0,1091
1	45453893	rs7553658	A	C	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.099;SB=-1.120e+02;SOR=0.693;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:64:186,0,64
1	45457681	rs12126314	G	A	627.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.984;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.450;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=-0.374;SB=-2.400e+02;SOR=1.091;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:656,0,285
1	45457708	rs12126318	G	A	501.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.760;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.655;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=-0.901;SB=-2.090e+02;SOR=1.222;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,18:27:99:530,0,223
1	45469176	rs12749251	A	T	757.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.473;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.713;SB=-3.020e+02;SOR=0.338;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,31:66:99:786,0,1070
1	45470130	rs7528534	T	C	911.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.31;SB=-2.041e+02;SOR=2.494;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:940,69,0
1	45472798	rs147908761	TTGTGTGTG	TTGTG,T	3462.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;RPA=15,13,11;RU=TG;SB=-1.314e+03;SOR=1.157;STR;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,22,28:55:99:3500,1505,1399,1157,0,1164
1	45473316	rs4660830	C	T	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=0.688;SB=0.00;SOR=1.112;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:262,0,179
1	45474008	rs7541207	T	C	1008.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.950;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.556;SB=-5.540e+02;SOR=0.784;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1037,0,1051
1	45474157	rs2298006	G	A	1358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.350;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=7.934;HaplotypeScore=2.7678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-0.428;SB=-5.420e+02;SOR=0.235;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,50:93:99:1387,0,1470
1	45474395	rs146072425	A	G	1303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.280;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-0.089;SB=-4.400e+02;SOR=0.716;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,46:98:99:1332,0,1352
1	45474750	rs2275599	A	T	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.666;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.869;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-1.009;SB=-5.000e+01;SOR=1.708;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:560,0,556
1	45474755	rs2275598	C	G	571.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=5.148;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.342;SB=-9.100e+01;SOR=1.609;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,20:44:99:600,0,654
1	45475566	rs6429552	A	G	1341.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-2.351e+02;SOR=3.145;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:39:99:1370,99,0
1	45476069	rs7533668	C	A	403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-2.271e+02;SOR=0.693;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:432,33,0
1	45476489	rs3806405	A	G	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.821;SB=-1.630e+02;SOR=0.444;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:347,0,309
1	45476663	rs2298005	G	A	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.228;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-0.711;SB=-1.310e+02;SOR=0.307;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:279,0,246
1	45478433	rs12749939	C	T	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=-0.192;SB=0.00;SOR=1.329;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:302,0,163
1	45479772	rs11211066	G	T	1360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.006;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.734;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.689;SB=-8.220e+02;SOR=0.775;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,53:105:99:1389,0,1546
1	45479874	rs6698485	G	T	2327.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-8.550e+02;SOR=1.852;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2356,175,0
1	45480733	rs6429553	C	T	817.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-2.620e+02;SOR=1.697;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:846,63,0
1	45480829	rs13948	T	C	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.398;SB=-5.900e+01;SOR=0.850;VQSLOD=10.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:166,0,139
1	45500294	rs6671633	A	G	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.497;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.481;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=1.725;SB=-7.300e+01;SOR=0.204;VQSLOD=7.74;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,11:25:99:308,0,450
1	45504720	rs7551698	G	C	757.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=1.290;SB=-3.440e+02;SOR=0.862;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,30:73:99:786,0,1049
1	45516840	rs149837338	G	A	264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.820;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-1.169;SB=-2.103e+01;SOR=1.460;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:293,0,443
1	45524213	rs3738246	C	T	2209.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-9.930e+02;SOR=1.385;VQSLOD=4.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2238,169,0
1	45536004	rs346702	A	G	389.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.84;SB=-2.091e+02;SOR=0.976;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:418,30,0
1	45671966	rs4454584	A	G	1055.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.634;HaplotypeScore=4.3342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=0.050;SB=-5.870e+02;SOR=0.350;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,37:63:99:1084,0,709
1	45796269	rs3219493	G	C	2090.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.85;SB=-6.540e+02;SOR=2.080;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2119,160,0
1	45798555	rs3219487	T	C	4031.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-1.808e+03;SOR=1.125;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4060,301,0
1	45805566	rs3219468	G	C	1688.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.023e+03;SOR=0.730;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1717,126,0
1	45864655	.	GA	G	45.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.65;MQ0=0;MQRankSum=1.754;POSITIVE_TRAIN_SITE;QD=5.08;RPA=24,23;RU=A;ReadPosRankSum=-0.700;SB=-2.378e+01;SOR=0.223;STR;VQSLOD=3.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,5:16:44:83,0,44
1	45880751	rs781230	C	T	715.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-4.400e+02;SOR=0.693;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:744,54,0
1	45923405	rs149714069	C	T	683.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.233;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-0.443;SB=-3.220e+02;SOR=1.141;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,26:59:99:712,0,921
1	45961955	rs937290	A	G	470.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-1.205e+02;SOR=2.584;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:499,39,0
1	45962137	rs41302744	T	C	2187.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-1.267e+03;SOR=0.818;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2216,160,0
1	45965307	rs12568144	G	A	4130.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-1.356e+03;SOR=2.019;VQSLOD=4.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4159,307,0
1	45965340	rs7546268	T	C	3510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-9.720e+02;SOR=2.371;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3539,256,0
1	45973880	.	C	T	914.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.634;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.056;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.86;ReadPosRankSum=1.117;SB=-4.730e+02;SOR=0.856;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,34:66:99:943,0,837
1	45973928	rs2275276	G	A	2122.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-1.291e+03;SOR=0.750;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2151,163,0
1	45980862	rs2356561	T	G	413.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=0.00;SOR=4.977;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:442,33,0
1	45981512	rs2356559	T	C	1740.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-9.820e+02;SOR=1.085;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1769,132,0
1	46027355	rs512083	T	C	1646.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-3.650e+02;SOR=2.608;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1675,123,0
1	46032974	rs2088102	T	C	418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;SB=0.00;SOR=4.977;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:447,33,0
1	46035760	rs3014216	A	T	557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SB=0.00;SOR=5.549;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:586,45,0
1	46050004	rs57257530	TTCGG	T	1951.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-3.781e+02;SOR=2.670;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:28:78:1989,78,0
1	46065998	rs3014211	T	C	844.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-3.200e+02;SOR=1.697;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:873,63,0
1	46073489	rs2230657	G	A	1827.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-9.150e+02;SOR=1.022;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1856,138,0
1	46078630	rs2050376	A	G	490.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-4.276e+01;SOR=3.912;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:519,39,0
1	46078854	rs2230658	A	G	1423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-7.190e+02;SOR=0.976;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1452,111,0
1	46078884	rs2230659	C	T	1297.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-6.580e+02;SOR=1.151;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1326,99,0
1	46080220	rs10718022	GT	G	651.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.07;RPA=8,7;RU=T;SB=-1.203e+02;SOR=3.014;STR;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:26:75:689,75,0
1	46080530	rs2991985	T	C	1174.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-4.950e+02;SOR=1.609;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1203,87,0
1	46080947	rs1972410	A	C	1422.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-8.600e+02;SOR=0.919;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1451,108,0
1	46081940	rs2356581	T	A	1374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.64;SB=-8.290e+02;SOR=0.776;VQSLOD=3.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1403,105,0
1	46081960	rs2253862	C	T	1444.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-8.010e+02;SOR=1.007;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1473,108,0
1	46082431	rs2991988	C	A	2142.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-1.074e+03;SOR=1.195;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2171,163,0
1	46085852	rs2275085	C	T	527.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=0.00;SOR=5.421;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:556,42,0
1	46085879	rs2275086	C	G	638.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-1.195e+02;SOR=2.833;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:667,48,0
1	46086077	rs3014246	C	T	2486.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-1.561e+03;SOR=0.791;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2515,187,0
1	46086913	rs3014245	C	T	1568.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.86;SB=-7.880e+02;SOR=0.929;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1597,120,0
1	46087577	rs3014242	G	A	1801.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-9.340e+02;SOR=0.729;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1830,135,0
1	46087879	rs3014241	A	G	2839.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-1.080e+03;SOR=1.691;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2868,208,0
1	46089225	rs3014240	C	G	2131.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-1.280e+03;SOR=0.754;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2160,157,0
1	46096442	rs10708597	CA	C	863.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;RPA=4,3;RU=A;SB=-1.413e+02;SOR=3.098;STR;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:31:78:901,78,0
1	46105725	rs66580837	GA	G	416.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.93;RPA=12,11;RU=A;SB=0.00;SOR=5.994;STR;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:454,57,0
1	46347875	rs56242896	A	T	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.63;ReadPosRankSum=2.968;SB=0.00;SOR=1.329;VQSLOD=6.47;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,9:14:99:317,0,141
1	46347876	rs11211216	A	T	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-2.968;SB=0.00;SOR=0.307;VQSLOD=7.14;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:99:146,0,300
1	46347878	rs201525530	AT	A	370.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.48;SB=0.00;SOR=5.421;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:408,42,0
1	46347910	rs6665193	G	A	967.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=0.00;SOR=6.593;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:996,78,0
1	46379518	rs4256763	A	G	2911.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-1.817e+03;SOR=0.734;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2940,217,0
1	46424864	rs34102169	G	T	944.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-2.001e+02;SOR=2.546;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:973,72,0
1	46424964	rs4460582	G	A	1389.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.95;SB=-8.750e+02;SOR=0.866;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1418,102,0
1	46466721	rs11589562	T	C	2769.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.70;SB=-1.832e+03;SOR=0.820;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2798,208,0
1	46472153	rs6429592	G	A	750.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=0.00;SOR=5.994;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:779,57,0
1	46476587	rs11211247	T	G	3848.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.0960;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.34;ReadPosRankSum=-0.248;SB=-1.634e+03;SOR=0.657;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,118:119:99:3877,280,0
1	46485258	.	T	G	1155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.675;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.83;ReadPosRankSum=0.147;SB=-5.350e+02;SOR=0.463;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,44:73:99:1184,0,740
1	46485548	rs946529	G	T	403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=0.00;SOR=5.283;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:432,33,0
1	46487552	rs2275426	G	A	2477.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-9.130e+02;SOR=1.704;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2506,193,0
1	46487560	rs946524	A	G	2415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-1.094e+03;SOR=1.463;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2444,187,0
1	46491635	rs785478	C	T	1315.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=-2.690e+02;SOR=2.833;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1344,102,0
1	46493460	rs1707336	T	G	1915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=-1.195e+03;SOR=0.818;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1944,138,0
1	46495434	rs2236560	G	A	788.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.234;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=5.141;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=0.472;SB=-1.650e+02;SOR=1.389;VQSLOD=7.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,30:80:99:817,0,1505
1	46496576	rs146619748	C	T	844.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-0.630;SB=-4.250e+02;SOR=0.570;VQSLOD=8.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,29:58:99:873,0,811
1	46496709	rs925524	A	G	1919.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-1.095e+03;SOR=0.906;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1948,147,0
1	46497500	rs9429088	T	A	1239.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-3.450e+02;SOR=2.303;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1268,93,0
1	46498375	rs1622208	A	G	1950.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-5.350e+02;SOR=2.468;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1979,147,0
1	46521517	rs785468	G	A	613.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.90;SB=-3.620e+02;SOR=0.693;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:642,48,0
1	46521559	rs785467	A	T	506.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=-2.700e+02;SOR=0.914;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:535,39,0
1	46546208	rs1768803	T	C	654.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=0.00;SOR=5.784;VQSLOD=7.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:51:683,51,0
1	46598269	rs1707304	C	A	587.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=-1.931e+02;SOR=1.828;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:616,45,0
1	46598273	rs1707303	A	C	651.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-2.750e+02;SOR=1.609;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:680,48,0
1	46655158	rs6659553	T	C	1897.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-1.152e+03;SOR=0.859;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1926,138,0
1	46657651	rs7521880	T	C	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.423;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.123;SB=0.00;SOR=0.602;VQSLOD=10.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:307,0,337
1	46658328	rs2292484	A	G	1014.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.051;HaplotypeScore=2.6552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=0.032;SB=-4.920e+02;SOR=0.409;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,37:74:99:1043,0,1097
1	46658343	rs2292485	G	A	970.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.056;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=1.704;SB=-3.790e+02;SOR=0.611;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,34:73:99:999,0,1135
1	46659104	rs7527668	T	C	839.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.311;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=0.406;SB=-2.310e+02;SOR=1.098;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,27:45:99:868,0,551
1	46659363	rs7527935	T	C	2128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.918;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=3.238;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-0.377;SB=-1.172e+03;SOR=0.431;VQSLOD=7.95;culprit=DP	GT:AD:DP:GQ:PL	0/1:58,76:134:99:2157,0,1459
1	46660295	POMGNT1	T	C	1643.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.262;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.605;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=1.247;SB=-8.470e+02;SOR=0.530;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,59:106:99:1672,0,1197
1	46663318	.	TG	T	453.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;DP=33;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.75;RPA=4,3;RU=G;ReadPosRankSum=0.109;SB=-1.720e+02;SOR=0.317;STR;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:491,0,618
1	46669261	.	T	G	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.65;ReadPosRankSum=-0.161;SB=-1.140e+02;SOR=0.850;VQSLOD=5.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,10:29:99:250,0,550
1	46726057	rs2295465	A	C	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.913;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=0.729;SB=-2.230e+02;SOR=0.432;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,17:25:99:446,0,251
1	46743900	rs1048771	C	T	784.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.985;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.120;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.756;SB=-9.600e+01;SOR=1.341;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,26:56:99:813,0,894
1	46746164	rs11542623	C	T	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.686;HaplotypeScore=1.8216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.78;ReadPosRankSum=0.960;SB=-1.710e+02;SOR=1.266;VQSLOD=7.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,23:69:99:557,0,1087
1	46774783	rs41292543	A	G	1379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.863;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=5.521;HaplotypeScore=3.6144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=1.473;SB=-8.770e+02;SOR=0.307;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,53:91:99:1408,0,839
1	46818502	rs41294480	A	G	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.232;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=11.419;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=-1.619;SB=-3.436e-02;SOR=3.383;VQSLOD=5.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,11:35:99:304,0,674
1	46827214	rs324414	A	C	1263.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-2.800e+02;SOR=2.833;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1292,93,0
1	46827456	rs9865	A	G	1419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.997;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=2.615;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-1.632;SB=-7.000e+02;SOR=0.481;VQSLOD=7.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:52,52:104:99:1448,0,1500
1	46870761	rs324420	C	A	1512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.541;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.646;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=0.916;SB=-8.570e+02;SOR=0.801;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:73,60:133:99:1541,0,1746
1	46871875	rs41309147	G	A	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=13.403;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-2.727;SB=-2.040e+02;SOR=0.039;VQSLOD=5.17;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,14:30:99:409,0,504
1	46871986	rs324419	T	C	931.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.213;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.407;SB=-5.840e+02;SOR=0.337;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,38:85:99:960,0,1187
1	46877810	rs78529632	C	T	224.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.861;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.643;SB=-1.330e+02;SOR=1.085;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:253,0,275
1	46972694	rs12567122	C	T	2012.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=2.585;HaplotypeScore=1.7880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-0.937;SB=-9.830e+02;SOR=0.929;VQSLOD=5.95;culprit=DP	GT:AD:DP:GQ:PL	0/1:108,81:189:99:2041,0,2841
1	46976462	rs57363509	G	A	348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.488;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=1.172;SB=-1.790e+02;SOR=0.269;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,12:27:99:377,0,464
1	46977008	rs41294766	G	A	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.90;ReadPosRankSum=2.208;SB=0.00;SOR=0.148;VQSLOD=8.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:87:87,0,287
1	47013180	rs10890404	A	G	2072.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.716;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=6.491;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-1.066;SB=-1.152e+03;SOR=0.922;VQSLOD=7.00;culprit=DP	GT:AD:DP:GQ:PL	0/1:57,80:137:99:2101,0,1387
1	47013364	rs1258041	T	C	632.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.216;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=7.897;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.022;SB=-8.800e+01;SOR=2.303;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,22:44:99:661,0,541
1	47014821	rs67593616	A	AAAAAG	2819.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;RPA=1,2;RU=AAAAG;SB=-1.009e+03;SOR=1.949;STR;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2808,139,0
1	47015488	rs140636734	CTAG	C	587.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.72;ReadPosRankSum=0.361;SB=-1.040e+02;SOR=1.675;VQSLOD=4.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:23:99:625,0,692
1	47015492	rs200551385	C	G	264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.860;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-0.825;SB=-8.500e+01;SOR=1.432;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:293,0,308
1	47059934	rs1258021	T	C	2737.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-1.266e+03;SOR=1.584;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2766,211,0
1	47075635	.	C	A	868.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.827;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.186;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.48;ReadPosRankSum=-1.213;SB=-2.720e+02;SOR=0.413;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,30:60:99:897,0,946
1	47078637	rs4660947	T	C	3065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;DB;DP=200;Dels=0.00;ExcessHet=3.0103;FS=1.794;HaplotypeScore=3.6661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=-0.616;SB=-1.435e+03;SOR=0.562;VQSLOD=6.01;culprit=DP	GT:AD:DP:GQ:PL	0/1:86,113:200:99:3094,0,2397
1	47080679	rs6671527	G	A	880.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.611;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-0.223;SB=-5.600e+02;SOR=0.359;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,34:59:99:909,0,618
1	47099346	rs723333	C	A	1075.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-2.311e+02;SOR=2.899;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1104,84,0
1	47108828	rs736188	T	C	653.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-1.115e+02;SOR=3.056;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:682,51,0
1	47109089	rs1745377	A	G	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=2.125;SB=-7.000e+01;SOR=1.296;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:389,0,279
1	47110668	rs1258054	G	C	578.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.748;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=6.182;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-1.382;SB=-5.600e+01;SOR=2.066;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:607,0,561
1	47110712	rs1258053	C	T	746.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.449;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=-0.632;SB=-2.700e+02;SOR=1.075;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,27:51:99:775,0,682
1	47110766	.	G	GC	3859.73	PASS	AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.40;RPA=1,2;RU=C;SB=-1.665e+03;SOR=1.013;STR;VQSLOD=3.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3897,253,0
1	47118067	rs620913	G	A	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.398;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-0.952;SB=0.00;SOR=1.179;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:370,0,203
1	47118096	rs2289446	C	A	473.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.448;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=6.495;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=1.934;SB=-9.732e-01;SOR=2.797;VQSLOD=6.09;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,16:30:99:502,0,406
1	47118189	rs620431	G	T	963.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.637;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.826;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.297;SB=-5.290e+02;SOR=0.601;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,39:83:99:992,0,1170
1	47124204	.	C	CA	438.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;RPA=3,4;RU=A;ReadPosRankSum=2.373;SB=-1.520e+02;SOR=0.784;STR;VQSLOD=9.00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,16:31:99:476,0,417
1	47124479	rs611468	A	G	384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.876;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.049;SB=-1.040e+02;SOR=0.338;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:413,0,427
1	47138444	rs616249	C	T	1352.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=-8.197e+01;SOR=5.084;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1381,108,0
1	47138819	rs614486	T	G	3086.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=10.763;DB;DP=224;Dels=0.00;ExcessHet=3.0103;FS=2.316;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.519;SB=-1.725e+03;SOR=0.550;VQSLOD=5.71;culprit=DP	GT:AD:DP:GQ:PL	0/1:106,118:224:99:3115,0,2767
1	47139117	rs77202675	T	A	2194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.839;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=1.214;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.440;SB=-1.264e+03;SOR=0.842;VQSLOD=6.63;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,94:170:99:2223,0,1800
1	47150104	rs76664198	T	C	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.360;SB=-1.765e+00;SOR=1.426;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:233,0,280
1	47153855	rs11211340	T	A	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.816;SB=0.00;SOR=1.085;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:209,0,119
1	47155372	rs17102441	A	C	1249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.748;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=-0.693;SB=-4.680e+02;SOR=0.716;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,46:71:99:1278,0,662
1	47155462	rs2241862	G	A	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.401;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=0.000;SB=-3.300e+01;SOR=1.765;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:373,0,123
1	47181920	.	CAAA	C	309.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.36;RPA=26,23;RU=A;ReadPosRankSum=0.577;SB=-7.894e+00;SOR=1.802;STR;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,13:17:45:281,0,45
1	47208282	rs12092360	T	C	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.347;SB=-1.340e+02;SOR=0.925;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:234,0,104
1	47264724	rs2297813	G	T	556.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=0.342;SB=-2.020e+02;SOR=0.673;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,21:29:99:585,0,257
1	47276728	rs2297812	G	C	2148.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.42;SB=-6.120e+02;SOR=2.147;VQSLOD=4.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2177,160,0
1	47277004	rs45580838	C	A	269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.887;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=0.041;SB=-9.732e-01;SOR=2.494;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:298,0,353
1	47279175	rs4646487	C	T	989.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=1.118;SB=-6.060e+02;SOR=0.883;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1018,0,889
1	47279789	rs2297811	C	T	1402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.678;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=0.360;SB=-7.650e+02;SOR=0.791;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,50:81:99:1431,0,897
1	47280085	rs4646490	C	CCT	1433.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;RPA=1,2;RU=CT;SB=-3.480e+02;SOR=2.226;STR;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:30:87:1471,87,0
1	47280746	rs3215983	GAT	G	1842.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.553;DB;DP=88;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=1.339;SB=-7.110e+02;SOR=0.518;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,37:88:99:1880,0,2589
1	47280859	rs2297810	G	A	1097.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.779;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=1.053;SB=-5.030e+02;SOR=0.800;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,42:96:99:1126,0,1345
1	47280884	rs4646491	C	T	1056.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-0.512;SB=-4.640e+02;SOR=0.521;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,44:92:99:1085,0,1211
1	47282772	rs2297809	C	T	1101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.963;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=1.858;SB=-5.830e+02;SOR=1.230;VQSLOD=7.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1130,0,1101
1	47282888	rs35333582	C	T	403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.108;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=9.587;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.069;SB=-2.120e+02;SOR=0.074;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:432,0,629
1	47283505	rs4646495	G	T	877.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.168;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.658;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-0.636;SB=-2.880e+02;SOR=1.222;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,29:60:99:906,0,868
1	47284572	rs3766195	G	A	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=0.816;SB=0.00;SOR=0.412;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:119,0,211
1	47308949	rs11211377	C	A	383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.405;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=6.794;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.832;SB=-8.097e+01;SOR=0.063;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:412,0,566
1	47309265	rs10749865	A	G	615.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=0.00;SOR=5.670;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:17:48:644,48,0
1	47310354	.	A	G	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-0.504;SB=-1.030e+02;SOR=0.519;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:352,0,226
1	47333836	rs4660963	G	C	556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.05;SB=-4.276e+01;SOR=4.047;VQSLOD=5.72;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,15:15:45:585,45,0
1	47395973	rs1126743	G	A	146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=0.748;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=1.063;SB=-3.100e+01;SOR=1.802;VQSLOD=0.106;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:175,0,163
1	47398743	rs3890011	G	C	965.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.387;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.811;HaplotypeScore=2.3294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.125;SB=-4.980e+02;SOR=0.791;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,36:85:99:994,0,1458
1	47402487	.	TTGTG	T	2604.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQ0=0;MQRankSum=0.830;POSITIVE_TRAIN_SITE;QD=22.45;RPA=14,12;RU=TG;ReadPosRankSum=-0.764;SB=-7.630e+02;SOR=0.815;STR;VQSLOD=2.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,50:122:99:2642,0,1624
1	47489786	rs2036462	T	C	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.528;SB=-2.901e+01;SOR=0.892;VQSLOD=10.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:165,0,138
1	47495822	rs12141009	C	T	1218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.621;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.876;HaplotypeScore=2.7353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.099;SB=-6.720e+02;SOR=0.841;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,50:80:99:1247,0,755
1	47496983	rs12041262	C	A	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=-0.626;SB=-1.765e+00;SOR=2.303;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:274,0,170
1	47498958	.	G	A	1101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;DP=96;Dels=0.00;ExcessHet=3.0103;FS=2.697;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.48;ReadPosRankSum=0.063;SB=-6.110e+02;SOR=0.784;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,42:96:99:1130,0,1502
1	47514024	rs10890447	A	G	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.982;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=0.054;SB=0.00;SOR=1.244;VQSLOD=10.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,10:16:99:359,0,190
1	47515563	.	G	GA	385.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=1.063;POSITIVE_TRAIN_SITE;QD=12.05;RPA=5,6;RU=A;ReadPosRankSum=0.019;SB=-6.103e+01;SOR=0.330;STR;VQSLOD=3.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,16:33:99:423,0,380
1	47534107	rs2055500	A	T	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-1.339;SB=-3.976e+01;SOR=0.160;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:327,0,375
1	47571902	rs4926802	C	T	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3790;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-3.630;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=2.398;SB=-1.510e+02;SOR=0.741;VQSLOD=1.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,12:36:99:355,0,621
1	47571905	rs28463559	C	T	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2111;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=0;MQRankSum=-3.558;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=2.434;SB=-1.560e+02;SOR=0.821;VQSLOD=1.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,12:35:99:363,0,572
1	47571943	rs149137568	CTTT	C	443.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;DB;DP=30;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=58.66;MQ0=0;MQRankSum=-2.213;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.07;RPA=16,13;RU=T;ReadPosRankSum=0.644;SB=-1.790e+02;SOR=1.329;STR;VQSLOD=0.255;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,14:30:99:481,0,429
1	47571996	rs4926804	T	C	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.347;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=-2.636;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=0.473;SB=-6.600e+01;SOR=1.270;VQSLOD=2.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,9:23:99:237,0,375
1	47572046	rs4926805	C	T	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=0.353;SB=-1.765e+00;SOR=1.179;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:159,0,235
1	47581122	rs7547893	A	T	447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.023;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-0.925;SB=-3.300e+01;SOR=0.846;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:476,0,390
1	47582195	rs10890464	G	A	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.905;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-0.141;SB=-3.401e+01;SOR=1.270;VQSLOD=10.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:243,0,135
1	47582242	rs145561171	ATTTCGT	A	1054.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DB;DP=27;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=1.481;SB=-3.010e+02;SOR=1.148;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:1092,0,1013
1	47582292	rs10890465	T	G	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.149;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.271;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=-1.242;SB=-3.160e+02;SOR=1.106;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,24:39:99:636,0,306
1	47583284	rs6664392	G	A	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=-0.872;SB=0.00;SOR=1.609;VQSLOD=10.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:90:238,0,90
1	47583321	.	G	GA	327.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;RPA=9,10;RU=A;ReadPosRankSum=-0.445;SB=0.00;SOR=1.101;STR;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:365,0,199
1	47583415	rs6664496	G	T	1192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.274;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=8.825;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-0.240;SB=-2.200e+02;SOR=1.718;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,39:78:99:1221,0,1035
1	47607281	rs12564525	C	T	1239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=4.846;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-0.815;SB=-3.220e+02;SOR=1.398;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,41:79:99:1268,0,905
1	47607547	rs12404941	C	G	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.337;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-0.042;SB=-4.276e+01;SOR=0.070;VQSLOD=7.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:202,0,417
1	47607641	rs11211465	C	T	975.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.636;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.536;SB=-1.240e+02;SOR=0.558;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,36:77:99:1004,0,1310
1	47607762	rs2056901	T	C	3261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=11.293;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-0.174;SB=-1.915e+03;SOR=0.681;VQSLOD=4.53;culprit=DP	GT:AD:DP:GQ:PL	0/1:122,128:250:99:3290,0,3132
1	47609489	rs10789501	T	C	1936.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.465;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=1.269;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.387;SB=-1.126e+03;SOR=0.806;VQSLOD=7.57;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,74:150:99:1965,0,2090
1	47609668	rs911909	T	C	1015.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.122;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=1.136;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=-1.255;SB=-2.780e+02;SOR=0.499;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,37:71:99:1044,0,985
1	47610065	rs149718343	A	C	1330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.53;MQ0=7;MQRankSum=0.384;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=1.061;SB=-2.690e+02;SOR=0.793;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,46:100:99:1359,0,1363
1	47652870	.	CCTTGAG	C	3738.73	PASS	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-5.381e+02;SOR=3.365;VQSLOD=7.17;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,42:43:99:3776,126,0
1	47652877	.	C	A	1432.77	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.11;SB=-1.891e+02;SOR=3.365;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1461,111,0
1	47652879	rs60327556	T	A	1412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.64;SB=-1.931e+02;SOR=3.365;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1441,108,0
1	47685455	rs927462	T	C	1478.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-3.710e+02;SOR=2.687;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1507,108,0
1	47689842	rs34087210	C	G	408.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=0.00;SOR=4.977;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:437,33,0
1	47691568	rs145295250	GCAGA	G	1440.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;DB;DP=42;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.20;RPA=3,2;RU=CAGA;ReadPosRankSum=0.143;SB=-6.740e+02;SOR=0.755;STR;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,24:42:99:1478,0,759
1	47717189	.	A	G	3164.77	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.97;SB=-1.689e+03;SOR=0.797;VQSLOD=4.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3193,244,0
1	47735280	rs2742104	T	C	961.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-1.741e+02;SOR=2.985;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:990,72,0
1	47753405	rs12125261	G	A	1039.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-2.191e+02;SOR=2.833;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1068,78,0
1	47770786	rs6692734	T	A	772.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=0.00;SOR=6.184;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:801,63,0
1	47841038	.	G	GA	692.73	PASS	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.12;RPA=7,8;RU=A;SB=-1.293e+02;SOR=2.833;STR;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:26:69:730,69,0
1	47841109	rs2253511	T	C	335.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-4.176e+01;SOR=3.258;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:364,27,0
1	47842431	rs3125648	G	A	876.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-4.780e+02;SOR=0.997;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:905,66,0
1	47842666	rs2820981	A	T	766.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.44;SB=-3.990e+02;SOR=1.460;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:57:795,57,0
1	47882497	rs34082359	C	T	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.932;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.48;ReadPosRankSum=0.980;SB=-5.150e-01;SOR=1.828;VQSLOD=5.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:94:94,0,256
1	47904668	.	T	TCCGCACCCGCAC	846.75	PASS	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.17;RPA=3,5;RU=CCGCAC;SB=-4.375e+02;SOR=1.609;STR;VQSLOD=4.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:12:23:884,23,0
1	48260116	rs3738314	C	T	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.348;SB=-1.765e+00;SOR=1.483;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:365,0,421
1	48690229	rs10788884	C	A	497.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=0.00;SOR=5.549;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:526,42,0
1	48697733	rs212991	T	G	981.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-4.540e+02;SOR=1.402;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:1010,72,0
1	48697751	rs61997212	C	T	228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.711;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.17;ReadPosRankSum=-0.384;SB=-9.500e+01;SOR=0.368;VQSLOD=7.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:28:99:257,0,479
1	48705391	rs11205459	G	A	571.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=0.00;SOR=5.549;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:600,45,0
1	48707838	rs705430	A	G	1591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SB=-4.060e+02;SOR=2.352;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1620,120,0
1	48764419	.	C	T	1892.77	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.03;SB=-8.280e+02;SOR=1.392;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1921,141,0
1	48869288	rs3738309	T	A	683.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8399;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-7.797e+01;SOR=3.816;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:712,54,0
1	48902552	rs78784453	G	A	488.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=2;QD=32.58;SB=-7.297e+01;SOR=2.833;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:517,39,0
1	49052933	rs2803277	T	C	2224.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-7.100e+02;SOR=2.070;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2253,178,0
1	49056695	rs7543402	T	C	1014.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-1.603e+02;SOR=3.545;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1043,84,0
1	49100332	rs319983	C	T	1190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.762;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.058;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.227;SB=-3.180e+02;SOR=0.495;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1219,0,1174
1	49113319	rs319953	T	C	2256.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-1.420e+03;SOR=0.914;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2285,169,0
1	49128720	rs320007	C	T	2445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-8.030e+02;SOR=1.981;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2474,184,0
1	49193394	rs1385152	G	T	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.305;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=-1.225;SB=-2.302e+01;SOR=2.049;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:429,0,290
1	49208095	rs67012482	A	AG	235.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.615;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-0.832;SB=0.00;SOR=0.836;VQSLOD=3.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:273,0,169
1	49224584	rs1128934	G	T	2728.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-1.448e+03;SOR=0.979;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2757,202,0
1	49511424	rs3934240	A	G	1231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.035;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=1.641;SB=-4.320e+02;SOR=0.927;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,44:99:99:1260,0,1360
1	49711281	rs7528510	C	T	532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.903;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-0.762;SB=-3.577e+01;SOR=0.142;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:561,0,727
1	50310802	rs7533801	T	C	775.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.75;SB=-4.060e+02;SOR=1.255;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:57:804,57,0
1	50311454	rs4926833	G	A	678.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-2.401e+02;SOR=1.828;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:707,51,0
1	50312200	rs4582848	A	C	535.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=0.00;SOR=5.421;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:564,42,0
1	50331725	rs10788920	T	C	352.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-1.633e+02;SOR=1.445;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:381,27,0
1	50661411	rs2480683	C	T	2858.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.830;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6461;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.07;ReadPosRankSum=0.810;SB=-1.500e+03;SOR=0.421;VQSLOD=3.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2887,217,0
1	50661688	rs2480682	T	C	429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-1.175e+02;SOR=2.303;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:458,33,0
1	50666515	rs2494876	C	T	2575.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.129e+03;SOR=1.556;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2604,190,0
1	50885474	.	C	T	722.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.570;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.63;ReadPosRankSum=0.041;SB=-2.330e+02;SOR=0.569;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,27:41:99:751,0,400
1	50956212	rs67057333	C	CAAATACAGTGG	2001.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-2.750e+02;SOR=3.126;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:2039,45,0
1	50957509	rs1149790	A	T	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.033;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.357;HaplotypeScore=5.5097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.104;SB=-5.600e+01;SOR=1.188;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,26:48:99:705,0,614
1	51121198	rs11205753	T	C	647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.229;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.732;SB=-2.080e+02;SOR=0.656;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,21:46:99:676,0,646
1	51323764	.	A	AT	269.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.27;RPA=2,3;RU=T;ReadPosRankSum=-0.908;SB=-1.110e+02;SOR=0.399;STR;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:307,0,158
1	51439777	rs1043141	C	T	1860.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.558;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=4.541;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.333;SB=-9.530e+02;SOR=0.607;VQSLOD=6.50;culprit=DP	GT:AD:DP:GQ:PL	0/1:101,69:170:99:1889,0,2546
1	51525330	rs7514622	C	T	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.52;ReadPosRankSum=0.191;SB=0.00;SOR=0.180;VQSLOD=9.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:89:89,0,264
1	51753812	rs635590	G	A	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.945;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-1.310;SB=-2.080e+02;SOR=0.563;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,25:53:99:684,0,761
1	51873951	rs1065754	G	A	1860.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-8.250e+02;SOR=1.536;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1889,138,0
1	51905949	.	C	CTG	1071.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;DP=68;ExcessHet=3.0103;FS=2.968;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=1.173;POSITIVE_TRAIN_SITE;QD=19.49;RPA=18,19;RU=TG;ReadPosRankSum=0.450;SB=-1.770e+02;SOR=1.321;STR;VQSLOD=0.526;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,31:68:99:1109,0,633
1	52082698	.	G	C	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;DP=23;Dels=0.00;ExcessHet=3.0103;FS=12.704;HaplotypeScore=2.8026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.95;ReadPosRankSum=3.642;SB=-1.352e-01;SOR=4.003;VQSLOD=1.95;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,10:23:99:142,0,264
1	52246806	rs374663364	G	A	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.34;ReadPosRankSum=0.000;SB=-6.300e+01;SOR=0.693;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:201,0,198
1	52266242	rs8375	G	A	1176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.295;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=0.895;SB=-6.400e+02;SOR=0.693;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,40:80:99:1205,0,1044
1	52272722	rs67317748	TTAG	T	281.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.67;RPA=2,1;RU=TAG;ReadPosRankSum=-0.552;SB=0.00;SOR=0.569;STR;VQSLOD=9.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,6:19:99:319,0,396
1	52279650	rs2982846	T	G	1032.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=-0.544;SB=-5.750e+02;SOR=0.862;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,41:69:99:1061,0,686
1	52289220	rs67976949	TGTATTAAGGTCAA	T	705.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DB;DP=20;ExcessHet=3.0103;FS=7.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=0.049;SB=-3.240e+02;SOR=0.041;VQSLOD=6.63;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:20:99:743,0,2087
1	52290984	rs11205896	T	G	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.614;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=-2.044;SB=-2.700e+02;SOR=0.743;VQSLOD=8.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,19:52:99:436,0,837
1	52293570	rs2077725	G	A	1134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=0.103;SB=-5.230e+02;SOR=0.662;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,45:64:99:1163,0,469
1	52293638	rs706495	G	A	814.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.35;SB=-1.155e+02;SOR=3.352;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:63:843,63,0
1	52303005	rs12944	G	A	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.873;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=-0.562;SB=0.00;SOR=1.493;VQSLOD=10.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:405,0,193
1	52306063	rs35723519	ATCT	A	212.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DB;DP=21;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=1.637;POSITIVE_TRAIN_SITE;QD=10.64;RPA=4,3;RU=TCT;ReadPosRankSum=0.165;SB=-3.400e+01;SOR=1.863;STR;VQSLOD=0.452;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,6:21:99:250,0,698
1	52344414	rs736756	A	C	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.115;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=0.497;SB=-8.197e+01;SOR=0.307;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:83:296,0,83
1	52402856	rs10888741	T	G	1114.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-4.120e+02;SOR=1.819;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1143,84,0
1	52402956	rs10888742	G	A	2263.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-8.750e+02;SOR=1.644;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2292,172,0
1	52486677	rs141171987	C	T	982.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.804;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-0.449;SB=-5.020e+02;SOR=0.853;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,41:93:99:1011,0,1356
1	52489322	rs2783178	G	A	2265.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.82;SB=-5.740e+02;SOR=2.483;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2294,166,0
1	52490418	rs4926906	C	T	951.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-1.235e+02;SOR=3.611;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:75:980,75,0
1	52517412	rs7529324	A	G	2429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-1.470e+03;SOR=0.961;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2458,175,0
1	52729432	rs3833531	C	G	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5127;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=1.809;POSITIVE_TRAIN_SITE;QD=19.42;ReadPosRankSum=0.393;SB=-5.400e+01;SOR=0.818;VQSLOD=3.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,12:16:81:339,0,81
1	52819888	rs2477101	A	G	425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-8.297e+01;SOR=2.494;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:454,33,0
1	52820226	rs2820334	G	A	3017.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=-1.413e+03;SOR=1.090;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3046,229,0
1	52840410	rs189748107	C	T	988.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.553;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.070;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=-0.987;SB=-3.620e+02;SOR=0.941;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,34:58:99:1017,0,672
1	52849000	.	C	T	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-1.158;SB=0.00;SOR=0.551;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:151,0,214
1	52851729	rs78572338	G	A	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.275;SB=-3.300e+01;SOR=0.527;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:164,0,179
1	52867655	.	C	T	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.327;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.54;ReadPosRankSum=-2.269;SB=0.00;SOR=0.693;VQSLOD=8.07;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,10:20:99:319,0,348
1	52878300	rs4319263	T	A	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.009;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=1.922;SB=-1.810e+02;SOR=1.193;VQSLOD=7.15;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,16:35:99:405,0,572
1	52882406	rs6677047	A	G	1146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.968;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=0.138;SB=-8.330e+02;SOR=0.627;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,48:75:99:1175,0,671
1	52912122	.	T	TA	83.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.81;RPA=11,12;RU=A;ReadPosRankSum=1.979;SB=-1.321e+01;SOR=1.140;STR;VQSLOD=7.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:22:99:121,0,267
1	52947350	.	T	TA	58.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DP=29;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=0.000;QD=2.55;RPA=15,16;RU=A;ReadPosRankSum=1.086;SB=-4.000e+01;SOR=0.293;STR;VQSLOD=4.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,6:29:96:96,0,277
1	52947711	rs17107242	T	C	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.491;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=0.810;SB=-4.276e+01;SOR=0.481;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:365,0,169
1	52961339	rs56251001	C	T	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=-0.105;SB=-3.777e+01;SOR=0.569;VQSLOD=9.80;culprit=SOR	GT:AD:DP:GQ:PL	0/1:3,7:10:97:211,0,97
1	52991638	rs12123698	C	T	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.147;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-0.281;SB=-2.440e+02;SOR=0.815;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,18:46:99:474,0,707
1	53072454	rs1970951	T	C	1298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.055;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=2.578;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.575;SB=-7.330e+02;SOR=0.462;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,46:105:99:1327,0,1702
1	53072741	rs1970950	A	G	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=0.179;SB=0.00;SOR=0.330;VQSLOD=9.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:127,0,255
1	53153432	rs443751	T	C	1158.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.172;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.845;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.586;SB=-4.770e+02;SOR=0.476;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,39:91:99:1187,0,1424
1	53153916	.	AT	A	47.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.18;RPA=16,15;RU=T;ReadPosRankSum=-0.114;SB=-1.709e+01;SOR=0.818;STR;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:17:85:85,0,133
1	53262151	rs56078509	C	T	746.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.387;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.608;SB=-2.780e+02;SOR=0.549;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,29:54:99:775,0,702
1	53320274	rs480299	G	T	4791.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-2.469e+03;SOR=1.157;VQSLOD=5.13;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4820,352,0
1	53323492	rs10788945	C	A	1611.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-2.351e+02;SOR=3.611;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1640,123,0
1	53323571	rs11206035	T	C	579.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.86;SB=0.00;SOR=5.549;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:608,45,0
1	53332445	rs564273	G	C	689.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=0.00;SOR=5.892;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:718,54,0
1	53333116	rs557847	A	G	311.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-4.276e+01;SOR=3.258;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:340,27,0
1	53351349	rs10581739	ATT	A	973.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.37;SB=0.00;SOR=5.994;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:1011,57,0
1	53362818	rs511599	T	C	523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.52;SB=0.00;SOR=5.421;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:552,42,0
1	53364976	rs576891	A	G	3342.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-1.669e+03;SOR=1.222;VQSLOD=3.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3371,241,0
1	53387379	rs7552139	G	C	742.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-1.821e+02;SOR=2.494;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:771,63,0
1	53416721	rs35364355	G	A	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.439;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-1.078;SB=0.00;SOR=0.776;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:418,0,365
1	53459023	.	T	C	983.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;DP=108;Dels=0.00;ExcessHet=3.0103;FS=1.652;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.697;SB=-4.850e+02;SOR=1.068;VQSLOD=5.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:64,44:108:99:1012,0,1600
1	53537266	rs1769316	G	A	256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.609;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=1.607;SB=-1.300e+02;SOR=0.355;VQSLOD=7.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,10:30:99:285,0,559
1	53541775	.	C	A	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.403;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.83;ReadPosRankSum=0.057;SB=-3.300e+01;SOR=1.426;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,16:25:99:474,0,284
1	53543112	rs946590	C	G	2352.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.37;SB=0.00;SOR=8.155;VQSLOD=0.547;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2381,175,0
1	53543312	rs12745973	C	T	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.532;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=1.260;SB=-1.330e+02;SOR=1.179;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:504,0,488
1	53544578	rs11206088	T	C	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.450;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-0.286;SB=-1.640e+02;SOR=0.368;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,13:37:99:389,0,753
1	53544597	rs1288389	T	C	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=0.835;SB=-9.400e+01;SOR=0.869;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,12:35:99:361,0,633
1	53547800	rs6687909	A	G	356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.526;DB;DP=32;Dels=0.03;ExcessHet=3.0103;FS=5.775;HaplotypeScore=3.7317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=1.766;SB=-5.150e-01;SOR=2.338;VQSLOD=6.14;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,12:31:99:385,0,605
1	53553702	rs1288400	A	G	541.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.51;SB=-3.330e+02;SOR=0.793;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:570,42,0
1	53554533	.	A	AT	332.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;DP=13;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.59;RPA=1,2;RU=T;ReadPosRankSum=1.294;SB=-1.395e+02;SOR=0.116;STR;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:370,0,136
1	53554736	rs58600784	C	T	121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=1.412;SB=-1.050e+02;SOR=0.446;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:150,0,139
1	53556532	rs2306461	G	A	1331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.090;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.861;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-1.332;SB=-5.490e+02;SOR=0.545;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,49:88:99:1360,0,1212
1	53558270	rs1288406	A	G	1150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=11.624;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.612;SB=-6.560e+02;SOR=0.172;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,45:87:99:1179,0,1225
1	53558583	rs67139105	C	CTG	733.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;RPA=1,2;RU=TG;SB=0.00;SOR=5.549;STR;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:771,45,0
1	53559310	rs11206091	T	C	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.109;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.32;ReadPosRankSum=1.078;SB=-2.302e+01;SOR=0.994;VQSLOD=7.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,10:37:99:262,0,802
1	53571288	rs1288422	C	G	564.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.50;SB=-4.276e+01;SOR=4.174;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:593,45,0
1	53574123	rs1769289	C	T	642.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.00;SB=0.00;SOR=5.784;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:671,51,0
1	53608133	rs3737990	C	A	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.108;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.652;SB=-1.360e+02;SOR=0.693;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:371,0,274
1	53662823	rs72673121	C	A	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.690;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=-0.906;SB=-1.580e+02;SOR=0.763;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:343,0,466
1	53676448	rs1799821	G	A	1110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-0.477;SB=-6.510e+02;SOR=0.740;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,46:97:99:1139,0,1648
1	53679229	rs1799822	A	G	1240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.819;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=0.667;SB=-3.710e+02;SOR=0.542;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:66,45:111:99:1269,0,2008
1	53681699	rs1134688	T	G	483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.295;SB=-2.390e+02;SOR=0.596;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,20:44:99:512,0,681
1	53684525	rs436887	C	G	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=0.570;SB=-1.940e+02;SOR=0.976;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:409,0,461
1	53738400	rs138032564	T	C	575.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-0.296;SB=-2.600e+02;SOR=0.552;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,24:54:99:604,0,814
1	53792651	rs3820198	A	C	932.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.476;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=0.201;SB=-4.960e+02;SOR=1.148;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,35:59:99:961,0,611
1	53932181	rs78070589	A	G	398.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.373;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=-0.223;SB=-6.100e+01;SOR=0.813;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,15:44:99:427,0,855
1	53974987	rs10749691	G	T	1047.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-5.360e+02;SOR=1.244;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1076,78,0
1	53990321	rs541224	C	T	441.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=5.283;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:470,36,0
1	54060016	rs35227000	G	C	1028.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.009;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.986;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-0.277;SB=-3.800e+02;SOR=0.929;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,36:67:99:1057,0,882
1	54060248	rs4307514	T	C	264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.459;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.655;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=0.779;SB=-1.370e+02;SOR=0.349;VQSLOD=7.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:27:99:293,0,552
1	54060483	.	G	A	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.648;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-0.739;SB=-1.300e+02;SOR=0.921;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:278,0,280
1	54272112	.	G	A	392.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.906;DP=43;Dels=0.00;ExcessHet=3.0103;FS=9.690;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-0.089;SB=-1.000e+02;SOR=1.848;VQSLOD=5.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,15:43:99:421,0,780
1	54325797	rs372393274	G	A	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.222;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.34;ReadPosRankSum=0.521;SB=-2.060e+02;SOR=0.713;VQSLOD=6.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,18:58:99:454,0,1024
1	54331715	rs1883452	C	G	372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=0.00;SOR=4.977;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:401,33,0
1	54331763	rs1883453	A	G	784.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.12;SB=-4.276e+01;SOR=4.892;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:813,66,0
1	54336963	rs185544153	T	G	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=8.953;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=0.945;SB=-1.603e+02;SOR=0.047;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:403,0,294
1	54344282	rs2272928	C	A	2258.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-7.270e+02;SOR=1.981;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2287,169,0
1	54360467	rs11588118	C	G	759.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-2.011e+02;SOR=2.400;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:788,57,0
1	54370306	rs2294512	G	A	674.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.125;HaplotypeScore=2.6797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=1.709;SB=-3.250e+02;SOR=1.098;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,27:66:99:703,0,1075
1	54375570	rs2235544	C	A	3139.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-1.821e+03;SOR=0.876;VQSLOD=6.75;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3168,229,0
1	54375701	rs11206244	C	T	561.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.966;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=-1.117;SB=-1.360e+02;SOR=0.343;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,19:47:99:590,0,807
1	54395673	.	CA	C	172.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.55;RPA=18,17;RU=A;ReadPosRankSum=1.725;SB=-8.600e+01;SOR=0.804;STR;VQSLOD=7.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,17:40:99:210,0,338
1	54427830	.	A	T	859.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.33;ReadPosRankSum=-0.951;SB=-3.960e+02;SOR=0.727;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,33:60:99:888,0,817
1	54474472	rs6672989	T	C	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.039;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.133;SB=0.00;SOR=0.914;VQSLOD=10.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:352,0,260
1	54477726	rs55766128	T	G	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=-2.052;SB=0.00;SOR=0.250;VQSLOD=8.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:192,0,506
1	54482915	rs11804837	G	A	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-2.515;SB=0.00;SOR=0.693;VQSLOD=8.85;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:163,0,176
1	54483694	rs34764952	C	T	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.497;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.36;ReadPosRankSum=1.083;SB=-1.270e+02;SOR=0.061;VQSLOD=6.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,8:16:99:146,0,247
1	54561916	rs7555099	C	T	727.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.212;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-1.235;SB=-1.650e+02;SOR=0.741;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,26:51:99:756,0,737
1	54605318	rs36013100	T	TGG,TG	863.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.888;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.74;MQ0=0;MQRankSum=0.424;POSITIVE_TRAIN_SITE;QD=31.99;RPA=8,10,9;RU=G;ReadPosRankSum=1.350;SB=-4.280e+02;SOR=0.223;STR;VQSLOD=2.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,8,18:29:99:901,537,536,244,0,200
1	54606804	rs3766465	C	T	1057.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.312;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=1.009;SB=-3.370e+02;SOR=0.693;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,38:86:99:1086,0,1308
1	54607051	rs671103	A	G	4454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-2.238e+03;SOR=1.267;VQSLOD=5.15;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4483,322,0
1	54607157	rs671539	G	A	822.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.901;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-0.873;SB=-1.570e+02;SOR=0.883;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,30:60:99:851,0,847
1	54618435	rs7528345	A	T	643.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.371;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=2.544;SB=-3.890e+02;SOR=0.544;VQSLOD=7.55;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,25:51:99:672,0,705
1	54636977	rs10493175	T	C	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.772;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=0.563;SB=-2.110e+02;SOR=0.693;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:610,0,427
1	54637167	rs625643	T	C	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=0.204;SB=-1.765e+00;SOR=1.329;VQSLOD=9.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:99:118,0,178
1	54640368	.	G	A	960.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.98;ReadPosRankSum=-0.646;SB=-5.310e+02;SOR=0.617;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,34:74:99:989,0,1091
1	54656651	rs4927066	C	G	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.805;SB=0.00;SOR=0.693;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:172,0,174
1	54670658	rs36006392	CCTT	C	642.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.95;RPA=2,1;RU=CTT;ReadPosRankSum=0.208;SB=0.00;SOR=0.569;STR;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:680,0,847
1	54681920	rs13571	G	C	902.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.659;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=-2.732;SB=-4.290e+02;SOR=0.768;VQSLOD=7.63;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:58,38:96:99:931,0,1601
1	54683856	rs15921	C	G	847.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.891;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-1.462;SB=-4.960e+02;SOR=0.574;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,32:71:99:876,0,986
1	54686374	rs612711	T	C	1313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=7.349;HaplotypeScore=2.6640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-0.115;SB=-5.480e+02;SOR=1.514;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,47:85:99:1342,0,935
1	54686464	rs613158	C	T	1328.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.325;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.901;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=-0.796;SB=-7.130e+02;SOR=0.582;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,52:79:99:1357,0,688
1	54692854	rs372535521	AG	A	840.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.539;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;MQRankSum=0.530;QD=25.48;RPA=10,9;RU=G;ReadPosRankSum=2.632;SB=-1.525e+02;SOR=1.609;STR;VQSLOD=1.33;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:3,30:41:28:878,28,0
1	54703630	rs113556489	C	T	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.604;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-0.704;SB=-1.765e+00;SOR=0.963;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:202,0,320
1	54703702	rs946443	C	A	736.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.235;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=8.648;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-0.138;SB=-5.600e+01;SOR=2.291;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,24:47:99:765,0,660
1	54706733	rs2297027	A	G	1103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.321;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=0.246;SB=-6.640e+02;SOR=0.622;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:65,49:114:99:1132,0,1662
1	55014099	rs299874	C	T	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.133;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.58;ReadPosRankSum=0.494;SB=-6.500e+01;SOR=0.321;VQSLOD=9.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:22:99:151,0,483
1	55014100	rs3753011	G	A	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.794;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.236;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=-1.014;SB=-9.900e+01;SOR=1.569;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,15:21:99:463,0,121
1	55014160	rs299872	C	T	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.60;ReadPosRankSum=-1.209;SB=-9.732e-01;SOR=1.508;VQSLOD=7.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:127,0,241
1	55058160	rs17394626	G	T	782.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.817;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=0.565;SB=-4.670e+02;SOR=0.584;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,30:53:99:811,0,591
1	55066759	rs1655534	T	C	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=-0.141;SB=-6.500e+01;SOR=0.627;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:279,0,124
1	55066789	rs10533779	CAT	C	429.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.186;DB;DP=16;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.86;ReadPosRankSum=0.828;SB=-9.700e+01;SOR=1.714;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:467,0,361
1	55066813	rs34278916	C	CAT	522.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;DB;DP=22;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=1.315;SB=-1.000e+02;SOR=1.675;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:560,0,560
1	55069650	.	C	T	896.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.859;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.299;SB=-3.590e+02;SOR=0.844;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,36:83:99:925,0,1266
1	55069790	rs892446	C	A	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=1.089;SB=-1.570e+02;SOR=0.693;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:316,0,414
1	55069986	rs746503	T	C	870.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=4.631;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-0.780;SB=-3.390e+02;SOR=1.280;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,33:73:99:899,0,1009
1	55072726	rs1616691	T	C	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=8.671;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=-0.585;SB=-9.600e+01;SOR=0.061;VQSLOD=6.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,8:27:99:206,0,589
1	55074840	rs1617287	T	A	913.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.241;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.082;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=0.141;SB=-2.650e+02;SOR=0.947;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,33:64:99:942,0,923
1	55074922	rs2289016	G	A	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-1.416;SB=-1.260e+02;SOR=0.675;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,12:27:99:327,0,498
1	55075452	rs1368883	G	A	773.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=8.619;HaplotypeScore=2.8790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-0.086;SB=-2.270e+02;SOR=1.785;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,28:69:99:802,0,1145
1	55080612	rs147772009	GGTGT	G,GGTGTGTGTGT	1840.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.288;DB;DP=38;ExcessHet=3.0103;FS=4.500;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=28.68;RPA=7,5,10;RU=GT;ReadPosRankSum=1.734;SB=-6.670e+02;SOR=1.360;STR;VQSLOD=4.41;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/2:1,18,12:38:99:1878,883,1410,1082,0,2013
1	55080629	.	A	G	1048.77	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.85;SB=-3.920e+02;SOR=1.609;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1077,78,0
1	55080635	.	G	A	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.312;SB=-9.300e+01;SOR=1.179;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:374,0,509
1	55088849	.	TA	T	37.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.22;RPA=12,11;RU=A;ReadPosRankSum=-1.160;SB=-1.807e+01;SOR=0.382;STR;VQSLOD=7.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:18:75:75,0,275
1	55118566	rs1655520	C	G	2271.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-1.386e+03;SOR=0.720;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2300,169,0
1	55119144	rs11206407	A	G	1124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.111;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=1.406;SB=-6.290e+02;SOR=0.673;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,47:107:99:1153,0,1704
1	55119289	rs9332417	G	C	1539.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=5.574;HaplotypeScore=1.9467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=2.766;SB=-6.970e+02;SOR=1.179;VQSLOD=6.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:70,53:123:99:1568,0,2078
1	55119515	rs1655519	T	G	2120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.076;SB=-1.091e+03;SOR=0.693;VQSLOD=7.83;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,76:152:99:2149,0,2130
1	55119546	rs1655518	A	G	4759.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-2.785e+03;SOR=0.707;VQSLOD=4.65;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4788,355,0
1	55129372	.	A	C	40.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=27.3327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.331;SB=-2.302e+01;SOR=0.693;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:69:69,0,471
1	55130931	rs2078273	C	T	764.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.549;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-0.775;SB=-3.090e+02;SOR=0.653;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,32:65:99:793,0,854
1	55130946	rs6703113	G	C	600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.043;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.680;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-0.659;SB=-2.840e+02;SOR=0.346;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,26:54:99:629,0,802
1	55130972	rs471724	C	T	930.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-2.391e+02;SOR=2.694;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:959,72,0
1	55134379	rs627095	C	T	1084.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-1.135e+02;SOR=3.545;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:87:1113,87,0
1	55134487	rs478513	G	A	1075.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=2.946;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.190;SB=-7.560e+02;SOR=0.438;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,45:81:99:1104,0,848
1	55136067	rs2251719	T	G	532.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-4.276e+01;SOR=4.047;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:561,42,0
1	55136529	rs480963	T	C	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=0.583;SB=-1.130e+02;SOR=0.673;VQSLOD=9.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,10:25:99:247,0,336
1	55139618	rs571199	G	A	881.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.491;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.235;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=-0.020;SB=-4.950e+02;SOR=0.247;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,30:50:99:910,0,544
1	55139741	rs570218	A	G	2298.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-1.145e+03;SOR=1.288;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2327,178,0
1	55152223	rs17110938	C	T	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.238;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.536;SB=-3.100e+01;SOR=2.066;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:444,0,230
1	55167773	rs646356	T	A	1607.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-7.050e+02;SOR=1.436;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1636,123,0
1	55172374	rs12026520	C	T	45.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.81;ReadPosRankSum=-0.086;SB=-1.765e+00;SOR=0.582;VQSLOD=9.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:74:74,0,334
1	55174819	rs12028701	C	T	498.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.677;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-0.715;SB=-1.620e+02;SOR=0.544;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,22:47:99:527,0,800
1	55175322	rs757837	A	G	474.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-1.245e+02;SOR=2.584;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:503,39,0
1	55182300	rs1147990	T	A	2158.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-7.980e+02;SOR=1.646;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2187,166,0
1	55197149	rs3815226	T	C	1761.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=3.118;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.461;SB=-7.760e+02;SOR=1.046;VQSLOD=7.87;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,63:140:99:1790,0,2033
1	55199104	rs372602795	TA	T	2076.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=32.96;RPA=4,3;RU=A;SB=-2.191e+02;SOR=4.244;STR;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2114,190,0
1	55199420	.	ATTTTTTTTT	AT,A	4111.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.072;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.91;MQ0=0;MQRankSum=4.532;QD=29.62;RPA=26,18,17;RU=T;ReadPosRankSum=1.734;SB=-6.290e+02;SOR=1.880;STR;VQSLOD=0.702;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,15,33:68:99:4149,578,477,287,0,288
1	55247097	rs2286203	G	A	503.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-0.852;SB=-2.910e+02;SOR=0.519;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:532,0,322
1	55247518	rs3815225	C	A	33.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.38;ReadPosRankSum=0.536;SB=-3.401e+01;SOR=0.169;VQSLOD=5.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:62:62,0,203
1	55250684	rs2286202	A	G	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.909;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.461;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.29;ReadPosRankSum=-0.682;SB=-4.200e+01;SOR=1.473;VQSLOD=7.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,11:40:99:320,0,780
1	55251689	rs586462	T	C	2571.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-1.423e+03;SOR=1.179;VQSLOD=4.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2600,184,0
1	55253346	rs2269999	G	A	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.271;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-1.388;SB=-9.100e+01;SOR=0.693;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:288,0,393
1	55253575	rs665118	T	C	658.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-3.510e+02;SOR=0.793;VQSLOD=5.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:54:687,54,0
1	55254006	rs28411121	T	A	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=-0.086;SB=0.00;SOR=1.981;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:82:307,0,82
1	55266845	rs1147984	C	T	488.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.323;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=0.380;SB=-2.490e+02;SOR=0.446;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:38:99:517,0,554
1	55271774	rs757581	A	G	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.524;SB=-9.300e+01;SOR=0.223;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:172,0,132
1	55272521	rs55723940	A	G	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.484;SB=-4.276e+01;SOR=0.223;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:193,0,197
1	55272643	rs6666034	C	G	1089.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.219;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-0.666;SB=-4.820e+02;SOR=0.726;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1118,0,1239
1	55273580	rs9782980	G	T	578.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.608;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-1.370;SB=-3.500e+02;SOR=0.663;VQSLOD=9.74;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,25:38:99:607,0,321
1	55277430	rs10788986	T	A	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-0.098;SB=-1.050e+02;SOR=0.693;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:198,0,200
1	55277599	rs600499	T	C	2193.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-6.910e+02;SOR=1.981;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2222,163,0
1	55282556	rs733168	A	G	771.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.557;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=0.936;SB=-1.440e+02;SOR=0.948;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,25:41:99:800,0,484
1	55318108	rs667222	C	T	1067.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.739;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=1.098;SB=-2.330e+02;SOR=0.671;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,36:63:99:1096,0,689
1	55319008	rs631749	T	C	761.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.16;ReadPosRankSum=0.034;SB=-1.070e+02;SOR=0.610;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,24:36:99:790,0,352
1	55319902	rs718265	A	G	684.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.837;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=6.254;HaplotypeScore=2.6023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-0.875;SB=-4.870e+02;SOR=0.328;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,29:49:99:713,0,529
1	55319935	rs141309546	GA	G	287.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;DB;DP=40;ExcessHet=3.0103;FS=4.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.57;RPA=7,6;RU=A;ReadPosRankSum=0.627;SB=-7.600e+01;SOR=1.516;STR;VQSLOD=6.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,15:40:99:325,0,641
1	55330966	rs611057	T	C	992.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-2.820e+02;SOR=2.376;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1021,75,0
1	55336950	rs608458	C	G	1471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-7.297e+01;SOR=5.136;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1500,111,0
1	55337446	rs12119804	T	C	352.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.418;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=0.384;SB=0.00;SOR=0.495;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:381,0,421
1	55341106	rs2075390	C	T	191.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=-0.493;SB=-1.040e+02;SOR=1.179;VQSLOD=10.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:24:220,0,24
1	55341351	rs626452	G	T	87.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=-1.795;SB=0.00;SOR=0.330;VQSLOD=9.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:116,0,241
1	55341915	rs638944	T	G	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.910;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.444;SB=-2.020e+02;SOR=0.976;VQSLOD=10.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:373,0,168
1	55446664	rs2253467	G	C	434.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.603e+02;SOR=1.765;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:463,33,0
1	55446671	rs2253466	C	T	497.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-1.573e+02;SOR=2.049;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:526,39,0
1	55446697	rs2253465	G	A	588.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-2.471e+02;SOR=1.721;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:617,48,0
1	55457710	rs2500326	G	A	2374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-1.262e+03;SOR=0.963;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2403,175,0
1	55457815	rs2495513	C	T	1414.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-5.740e+02;SOR=1.609;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1443,105,0
1	55464743	rs2500340	T	C	664.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=-3.876e+01;SOR=4.407;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:693,51,0
1	55464790	rs2500341	C	G	1295.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-4.000e+02;SOR=2.191;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1324,96,0
1	55473043	rs6687801	G	A	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.592;SB=-1.720e+02;SOR=0.627;VQSLOD=10.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:327,0,196
1	55474325	rs6682884	A	C	2029.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=2.030;HaplotypeScore=2.4932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=2.050;SB=-1.066e+03;SOR=0.887;VQSLOD=7.11;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,77:151:99:2058,0,1948
1	55474476	rs4339899	C	G	1091.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.246;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.035;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-1.223;SB=-3.540e+02;SOR=0.512;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,37:72:99:1120,0,1022
1	55505732	rs2495482	A	G	307.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=-1.951e+02;SOR=0.859;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:336,24,0
1	55516781	rs599037	G	T	2783.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-7.220e+02;SOR=2.066;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2812,211,0
1	55518093	rs11800243	G	A	600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.420;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.162;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-0.286;SB=-1.940e+02;SOR=0.916;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,23:52:99:629,0,815
1	55518160	rs11806638	C	A	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.414;SB=-1.360e+02;SOR=0.693;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:452,0,385
1	55518190	rs45597632	AC	A	281.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;RPA=8,7;RU=C;ReadPosRankSum=0.954;SB=-8.700e+01;SOR=0.941;STR;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:319,0,365
1	55518287	rs11800265	G	A	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.22;ReadPosRankSum=1.264;SB=-1.410e+02;SOR=0.636;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:451,0,257
1	55518316	rs2483205	C	T	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=4.168;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.90;ReadPosRankSum=0.503;SB=-1.321e+01;SOR=2.002;VQSLOD=6.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,9:32:99:281,0,635
1	55518467	rs2495477	A	G	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.637;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.544;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=1.544;SB=-1.709e+01;SOR=2.093;VQSLOD=6.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,10:31:99:336,0,551
1	55518528	rs494198	C	A	335.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-7.997e+01;SOR=2.494;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:364,27,0
1	55523033	rs509504	A	G	1144.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-4.710e+02;SOR=1.483;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1173,84,0
1	55523984	rs584626	C	T	356.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.75;SB=0.00;SOR=4.804;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:385,30,0
1	55525399	rs45439391	C	T	189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.383;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=0.198;SB=-3.500e+01;SOR=0.255;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,7:20:99:218,0,441
1	55525400	rs483462	G	A	383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.643;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=-0.746;SB=-3.400e+01;SOR=1.739;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,13:19:99:412,0,192
1	55527323	rs630431	G	A	730.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.300;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=7.912;HaplotypeScore=2.7259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.382;SB=-1.730e+02;SOR=1.850;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,27:59:99:759,0,891
1	55529187	rs505151	G	A	959.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-5.360e+02;SOR=1.044;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:988,72,0
1	55538385	rs654674	T	C	1854.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-3.670e+02;SOR=3.180;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1883,141,0
1	55541174	rs487230	A	G	2098.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-8.150e+02;SOR=1.685;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2127,154,0
1	55545515	rs550336	C	G	416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=-1.185e+02;SOR=1.981;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:445,33,0
1	55546895	rs683880	T	C	780.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.52;SB=0.00;SOR=6.091;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:809,60,0
1	55555285	rs548852	G	A	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-8.097e+01;SOR=2.670;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:410,30,0
1	55557859	rs68186820	A	ATT	1894.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.94;SB=-3.701e+02;SOR=2.833;VQSLOD=6.11;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1932,99,0
1	55557864	rs3736992	C	T	930.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.10;SB=-1.205e+02;SOR=3.611;VQSLOD=4.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:959,72,0
1	55560796	rs503495	T	C	412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.22;SB=0.00;SOR=4.977;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:441,33,0
1	55562125	rs580485	G	T	632.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-1.493e+02;SOR=2.419;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:661,48,0
1	55566411	rs67540253	TTAGTC	T	1084.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=0.00;SOR=5.421;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:1122,42,0
1	55567410	rs615652	A	G	1023.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-3.200e+02;SOR=2.165;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1052,75,0
1	55572867	rs594226	G	A	1929.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-2.750e+02;SOR=3.461;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1958,147,0
1	55614036	rs34030121	CAT	C	1419.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.01;SB=0.00;SOR=6.736;VQSLOD=5.34;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1457,84,0
1	55619422	rs1165230	G	A	443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=0.00;SOR=5.136;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:472,36,0
1	55638075	rs1165222	G	A	1498.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-3.500e+02;SOR=2.636;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1527,114,0
1	55643837	rs11350615	TA	T	1487.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;RPA=4,3;RU=A;SB=-1.085e+02;SOR=4.712;STR;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1525,132,0
1	56673450	rs778415	A	G	423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.07;SB=-1.245e+02;SOR=1.802;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:452,33,0
1	56673585	rs1236961	T	C	595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-2.660e+02;SOR=1.292;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:624,45,0
1	57185818	rs857141	A	G	1518.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-2.580e+02;SOR=3.056;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1547,114,0
1	57192353	rs71772656	TAAA	T	287.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.98;RPA=5,2;RU=A;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;STR;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:13:99:325,0,289
1	57204097	rs79541345	G	C	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.696;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=0.284;SB=0.00;SOR=1.765;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:370,0,118
1	57216949	rs6688703	T	C	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.615;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.496;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-0.717;SB=-1.000e+02;SOR=1.002;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:453,0,563
1	57219377	rs12402907	C	G	677.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.124;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=-1.027;SB=-2.340e+02;SOR=0.999;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,26:56:99:706,0,873
1	57219631	.	G	GA	364.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;RPA=7,8;RU=A;ReadPosRankSum=-0.867;SB=-3.377e+01;SOR=0.446;STR;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:25:99:402,0,184
1	57221553	.	G	T	675.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.788;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.52;ReadPosRankSum=1.310;SB=-3.760e+02;SOR=0.553;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,25:50:99:704,0,676
1	57221554	.	A	G	698.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.409;DP=50;Dels=0.02;ExcessHet=3.0103;FS=1.098;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.26;ReadPosRankSum=1.111;SB=-3.930e+02;SOR=0.476;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:727,0,607
1	57224460	rs857103	G	C	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.520;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.44;ReadPosRankSum=-0.846;SB=-1.360e+02;SOR=1.230;VQSLOD=6.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,18:61:99:482,0,1181
1	57233419	.	C	T	1657.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.069;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.49;ReadPosRankSum=0.262;SB=-2.930e+02;SOR=0.809;VQSLOD=7.57;culprit=DP	GT:AD:DP:GQ:PL	0/1:51,56:107:99:1686,0,1462
1	57254697	rs41305876	G	A	652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-0.927;SB=-2.860e+02;SOR=0.627;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:681,0,475
1	57340727	rs652785	C	A	2063.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-1.216e+03;SOR=0.849;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2092,154,0
1	57372591	rs619545	C	T	1424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-3.600e+02;SOR=2.356;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1453,108,0
1	57395020	rs2795	A	G	893.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-1.951e+02;SOR=2.910;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:922,72,0
1	57395251	rs605648	T	C	3073.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-1.903e+03;SOR=0.921;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3102,220,0
1	57395421	rs653804	C	G	512.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-6.997e+01;SOR=3.126;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:541,39,0
1	57409584	rs41286848	T	A	120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=-0.552;SB=0.00;SOR=0.260;VQSLOD=9.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:149,0,347
1	57409605	rs41286850	G	A	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-0.616;SB=0.00;SOR=0.412;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:132,0,201
1	57417781	rs34438223	C	T	892.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.872;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=1.668;SB=-5.340e+02;SOR=0.869;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,35:73:99:921,0,1032
1	57422484	rs1013579	C	T	4499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-2.945e+03;SOR=0.734;VQSLOD=6.26;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4528,325,0
1	57498844	rs66580844	T	TACAC	604.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;RPA=11,13;RU=AC;SB=-6.946e+01;SOR=2.670;STR;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:33:642,33,0
1	57528772	rs1261611	A	G	860.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.11;SB=-1.981e+02;SOR=2.670;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:889,66,0
1	57537062	rs12754054	G	A	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.172;SB=-1.080e+02;SOR=0.141;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:238,0,288
1	57602334	rs564665	G	A	2462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-1.462e+03;SOR=0.796;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2491,181,0
1	57602383	rs563921	T	C	2028.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-7.770e+02;SOR=1.828;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2057,147,0
1	58939502	rs12118488	C	A	831.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.559;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=0.546;SB=-2.460e+02;SOR=0.641;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,34:82:99:860,0,1359
1	58946861	rs12144759	T	G	609.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.019;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.674;HaplotypeScore=2.3346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=0.832;SB=-1.260e+02;SOR=1.112;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,23:59:99:638,0,978
1	58946947	rs338224	T	C	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.907;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=-1.203;SB=0.00;SOR=0.188;VQSLOD=9.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:119,0,338
1	58971831	rs3087585	G	A	1139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.839;HaplotypeScore=1.6809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.673;SB=-5.780e+02;SOR=0.866;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,43:82:99:1168,0,984
1	58971940	rs11207245	C	A	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.196;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-1.381;SB=-7.100e+01;SOR=0.269;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:501,0,567
1	59004979	rs902925	C	T	2026.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-2.590e+02;SOR=3.729;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2055,157,0
1	59096544	rs72922139	A	G	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=0;MQRankSum=-1.810;QD=17.69;ReadPosRankSum=0.604;SB=-1.400e+02;SOR=0.653;VQSLOD=2.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,11:17:99:329,0,161
1	59096582	rs72676741	G	A	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.56;MQ0=0;MQRankSum=-2.766;QD=14.39;ReadPosRankSum=0.950;SB=-1.380e+02;SOR=0.368;VQSLOD=1.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:316,0,243
1	59096669	rs75913621	C	G	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=0;MQRankSum=-2.440;QD=11.38;ReadPosRankSum=-1.897;SB=-1.430e+02;SOR=0.766;VQSLOD=1.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,11:26:99:324,0,399
1	59096689	rs74079626	A	G	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-2.032;QD=11.38;ReadPosRankSum=-1.859;SB=-1.710e+02;SOR=0.693;VQSLOD=0.990;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,12:28:99:347,0,428
1	59096693	rs74079627	G	A	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-1.739;QD=10.81;ReadPosRankSum=-0.942;SB=-1.600e+02;SOR=0.743;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,11:28:99:331,0,455
1	59096779	.	G	GA	754.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.16;RPA=1,2;RU=A;ReadPosRankSum=0.366;SB=-3.790e+02;SOR=0.665;STR;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,19:30:99:792,0,395
1	59125683	rs232777	C	T	241.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.049;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-0.409;SB=-4.076e+01;SOR=0.155;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:270,0,358
1	59125894	rs12092264	A	G	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=-0.227;SB=-2.901e+01;SOR=1.230;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:239,0,288
1	59125899	rs12082192	G	A	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-0.684;SB=-3.100e+01;SOR=0.859;VQSLOD=9.72;culprit=SOR	GT:AD:DP:GQ:PL	0/1:10,7:17:99:224,0,288
1	59126676	rs232779	A	C	415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=-4.276e+01;SOR=3.611;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:444,33,0
1	59127024	rs4912364	T	G	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.207;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.029;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-0.084;SB=-4.120e+02;SOR=0.793;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:718,0,750
1	59127207	rs232780	T	C	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.171;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=5.656;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-0.334;SB=-1.961e+02;SOR=0.061;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,16:23:99:451,0,216
1	59131088	rs516956	A	G	570.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.205;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.351;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-0.353;SB=-1.830e+02;SOR=0.139;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:599,0,707
1	59131089	rs516957	A	C	568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.152;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.479;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-0.159;SB=-1.850e+02;SOR=0.128;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,21:45:99:597,0,746
1	59131311	rs232790	G	T	2630.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-7.840e+02;SOR=2.303;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2659,202,0
1	59133024	rs232794	T	G	274.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.937;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.722;SB=0.00;SOR=0.527;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:303,0,341
1	59134586	rs11207284	G	C	801.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.821;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=1.606;SB=-4.260e+02;SOR=0.818;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,33:87:99:830,0,1742
1	59134607	rs66839551	C	CAG	5477.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-2.502e+03;SOR=0.976;VQSLOD=5.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:95:99:5515,283,0
1	59137718	.	T	C	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.763;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.81;ReadPosRankSum=1.153;SB=-9.500e+01;SOR=0.350;VQSLOD=6.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,13:32:99:342,0,563
1	59137783	rs539141	A	G	424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.43;SB=0.00;SOR=4.977;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:453,33,0
1	59139223	rs2064370	C	G	1915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;SB=-4.790e+02;SOR=2.564;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1944,144,0
1	59141365	rs17118097	G	A	281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=-0.342;SB=0.00;SOR=1.112;VQSLOD=10.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:310,0,202
1	59142713	rs579110	T	C	2870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-1.743e+03;SOR=1.051;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2899,214,0
1	59147420	rs11207292	G	A	769.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-1.603e+02;SOR=2.494;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:798,60,0
1	59147926	rs12139511	T	C	2375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-1.337e+03;SOR=0.836;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2404,175,0
1	59148118	rs17118103	A	T	1337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.713;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=2.378;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=1.028;SB=-7.770e+02;SOR=0.822;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:65,53:118:99:1366,0,1751
1	59150941	rs2206764	G	A	1297.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-4.660e+02;SOR=1.828;VQSLOD=4.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:96:1326,96,0
1	59150997	rs5774421	TA	T	265.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=0.617;POSITIVE_TRAIN_SITE;QD=15.63;RPA=13,12;RU=A;ReadPosRankSum=-0.442;SB=0.00;SOR=2.712;STR;VQSLOD=1.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,14:21:34:303,0,34
1	59158632	rs12097333	T	C	1397.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-4.470e+02;SOR=2.147;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1426,102,0
1	59165838	rs11207297	T	G	189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=1.687;SB=-4.176e+01;SOR=0.569;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:83:218,0,83
1	59248813	rs2760499	G	C	2361.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;SB=-6.140e+02;SOR=2.584;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2390,172,0
1	59251097	rs2760501	T	G	165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-0.155;SB=-1.765e+00;SOR=1.863;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:194,0,188
1	59465354	rs2764902	G	T	332.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.73;SB=-1.453e+02;SOR=1.445;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:361,27,0
1	59465642	rs2716146	G	A	1294.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-6.130e+02;SOR=1.151;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1323,99,0
1	59465725	rs2716147	G	A	1486.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-9.070e+02;SOR=0.813;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1515,114,0
1	59465849	rs2716148	G	A	1320.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-6.350e+02;SOR=1.312;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1349,99,0
1	59465881	rs2716149	C	G	969.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-4.050e+02;SOR=1.609;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:998,72,0
1	59465917	rs2716150	G	C	711.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-3.600e+02;SOR=1.179;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:740,54,0
1	59465926	rs2764901	A	C	753.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-3.940e+02;SOR=1.051;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:782,60,0
1	59466192	rs2764900	A	G	384.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.48;SB=-1.483e+02;SOR=1.765;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:413,30,0
1	59787350	rs835409	T	G	1123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.668;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.100;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=0.603;SB=-2.400e+02;SOR=0.871;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,39:73:99:1152,0,886
1	59844471	rs835435	G	A	2771.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-1.895e+03;SOR=0.799;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2800,199,0
1	60228310	rs10668386	T	TTC	6179.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-2.444e+03;SOR=1.189;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:6217,334,0
1	60299820	rs618716	C	G	1233.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.69;SB=-7.870e+02;SOR=0.836;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:93:1262,93,0
1	60381729	.	T	C	974.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.357;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.893;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.442;SB=-3.660e+02;SOR=0.822;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,38:82:99:1003,0,1118
1	60392173	.	G	T	558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.423;SB=-2.650e+02;SOR=0.739;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,23:48:99:587,0,587
1	60466911	rs67112814	ACAG	A	532.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;DB;DP=33;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=-1.740;SB=-1.470e+02;SOR=1.276;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,11:33:99:570,0,1320
1	60475930	rs616949	C	G	566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.310;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.99;ReadPosRankSum=-1.107;SB=-1.450e+02;SOR=0.818;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,18:27:99:595,0,223
1	60505578	rs680390	A	G	1112.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-1.633e+02;SOR=3.442;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1141,90,0
1	61331160	.	CT	C	119.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQ0=0;MQRankSum=1.487;POSITIVE_TRAIN_SITE;QD=3.99;RPA=21,20;RU=T;ReadPosRankSum=-1.349;SB=-3.539e+00;SOR=1.276;STR;VQSLOD=2.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,15:41:99:157,0,238
1	61743160	rs332827	G	A	941.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.868;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.937;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=0.193;SB=-3.810e+02;SOR=1.028;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,38:87:99:970,0,1354
1	61743337	rs11207719	G	T	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.939;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=0.470;SB=-2.103e+01;SOR=1.445;VQSLOD=7.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,12:36:99:354,0,675
1	61869783	rs2236059	G	A	1231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.510;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=2.005;HaplotypeScore=3.5606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.761;SB=-4.280e+02;SOR=0.481;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1260,0,985
1	61872541	rs10889221	G	A	718.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.280;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.553;SB=-5.800e+01;SOR=0.793;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:44:99:747,0,690
1	61892301	.	T	TG	3278.73	PASS	AC=2;AF=1.00;AN=2;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.57;RPA=1,2;RU=G;SB=-1.376e+03;SOR=1.073;STR;VQSLOD=5.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:74:99:3316,217,0
1	61921185	.	A	AT	82.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.19;RPA=13,14;RU=T;ReadPosRankSum=1.275;SB=0.00;SOR=1.402;STR;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,6:10:44:120,0,44
1	62160542	rs1151765	A	G	507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.44;SB=0.00;SOR=5.283;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:536,39,0
1	62231924	rs34823754	T	TTGA	1635.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.63;RPA=1,2;RU=TGA;SB=-2.563e+02;SOR=3.180;STR;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1673,81,0
1	62232031	rs1286835	C	T	2584.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.50;SB=-1.496e+03;SOR=1.029;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2613,190,0
1	62253483	rs3762321	G	A	1023.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.747;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=1.170;SB=-5.560e+02;SOR=0.850;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:69,40:109:99:1052,0,1944
1	62257223	rs3790577	A	G	458.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.56;SB=0.00;SOR=5.136;VQSLOD=4.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:487,36,0
1	62261168	rs7516332	A	G	3269.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5020;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-2.126e+03;SOR=0.804;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3298,235,0
1	62263307	rs4915777	G	A	336.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-4.176e+01;SOR=3.258;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:365,27,0
1	62329885	rs35853578	AT	A	634.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.60;RPA=7,6;RU=T;SB=-1.203e+02;SOR=2.833;STR;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:24:69:672,69,0
1	62330080	rs2799627	T	G	4065.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-1.639e+03;SOR=1.590;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,120:120:99:4094,295,0
1	62330353	rs2275859	G	A	1155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-1.130;SB=-4.040e+02;SOR=0.767;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,44:79:99:1184,0,928
1	62330374	rs17371993	A	T	875.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.057;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-0.502;SB=-3.160e+02;SOR=0.527;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,33:67:99:904,0,944
1	62365217	rs1412622	C	T	1695.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.059;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.40;ReadPosRankSum=0.802;SB=-2.900e+02;SOR=1.437;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,53:54:93:1724,93,0
1	62365428	.	G	GA	557.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DP=34;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.43;RPA=2,3;RU=A;ReadPosRankSum=0.266;SB=-7.797e+01;SOR=0.133;STR;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:34:99:595,0,462
1	62374267	rs2151122	T	C	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=0.00;SOR=4.804;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:412,30,0
1	62380124	rs4915789	A	G	526.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-8.197e+01;SOR=3.383;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:555,45,0
1	62380270	rs1134766	C	T	1334.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.02;SB=-5.740e+02;SOR=1.085;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:49:99:1363,102,0
1	62380298	rs1056513	G	A	1346.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.1517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-4.490e+02;SOR=1.662;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1375,99,0
1	62393394	rs2251182	A	G	3111.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.08;SB=-1.967e+03;SOR=0.789;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3140,235,0
1	62417952	rs2482877	A	G	688.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.006;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;MQRankSum=0.471;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.05;ReadPosRankSum=-0.828;SB=-3.577e+01;SOR=3.056;VQSLOD=0.676;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,18:19:54:717,54,0
1	62644118	rs2481703	A	G	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.835;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=1.511;SB=-2.801e+01;SOR=0.593;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:274,0,335
1	62672546	rs2457829	G	A	624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.012;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-1.922;SB=-2.050e+02;SOR=1.312;VQSLOD=7.80;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,22:51:99:653,0,758
1	62673037	rs7542665	T	C	510.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.752;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.641;SB=-1.970e+02;SOR=0.653;VQSLOD=9.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,16:43:99:539,0,710
1	62673225	rs7533274	G	A	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-0.985;SB=-1.000e+02;SOR=0.199;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:224,0,271
1	62675892	rs2481694	A	G	99.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.87;ReadPosRankSum=0.740;SB=-5.300e+01;SOR=0.850;VQSLOD=6.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:18:99:128,0,337
1	62676612	rs66958136	A	G	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=0.011;SB=-2.310e+02;SOR=0.791;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,19:48:99:521,0,829
1	62677048	rs1056517	G	T	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.935;SB=-1.760e+02;SOR=0.527;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:416,0,423
1	62677050	rs12137401	C	T	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.854;SB=-1.730e+02;SOR=0.665;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:369,0,436
1	62677118	rs12130050	A	G	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.902;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-1.686;SB=-1.070e+02;SOR=0.527;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:335,0,157
1	62703977	rs34591898	G	A	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.805;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=-0.319;SB=-1.543e+02;SOR=0.177;VQSLOD=6.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,14:18:97:408,0,97
1	62704134	rs41289438	A	G	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.407;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.88;ReadPosRankSum=-1.023;SB=-1.120e+02;SOR=0.990;VQSLOD=6.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,10:35:99:234,0,705
1	62712999	rs111297754	TG	T	121.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.07;RPA=5,4;RU=G;ReadPosRankSum=-0.709;SB=-9.732e-01;SOR=2.636;STR;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:159,0,202
1	62713224	rs2941679	C	G	1648.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-9.480e+02;SOR=0.773;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1677,120,0
1	62713246	rs10889315	G	A	489.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=2.137;SB=-2.840e+02;SOR=0.656;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,19:47:99:518,0,832
1	62728784	rs2666472	A	G	385.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=9.506;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.658;SB=-1.417e+01;SOR=2.804;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,14:37:99:414,0,658
1	62728838	rs2258470	T	C	544.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.036;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=-0.919;SB=-3.010e+02;SOR=0.511;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,24:56:99:573,0,887
1	62728861	rs2260581	T	C	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.536;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-0.468;SB=-4.090e+02;SOR=0.730;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,27:60:99:643,0,854
1	62728918	rs2262110	G	A	690.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.021;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.794;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=1.061;SB=-2.520e+02;SOR=1.246;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,24:55:99:719,0,798
1	62729015	rs2262106	G	A	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.926;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.998;SB=-9.400e+01;SOR=0.818;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:398,0,577
1	62733826	rs17123303	T	C	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=0.052;SB=-1.390e+02;SOR=0.653;VQSLOD=10.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:211,0,198
1	62733939	rs11207950	G	A	266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.515;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=-0.805;SB=-1.460e+02;SOR=0.368;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,11:31:99:295,0,483
1	62734089	rs17123306	C	T	465.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.353;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.577;SB=-3.020e+02;SOR=0.793;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,19:39:99:494,0,558
1	62738904	rs7516290	T	C	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.089;SB=-1.120e+02;SOR=1.085;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:277,0,235
1	62740446	rs2666506	T	C	737.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.013;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-0.148;SB=-3.730e+02;SOR=0.484;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,27:58:99:766,0,818
1	62740449	rs2666507	T	C	697.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.259;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.101;SB=-3.470e+02;SOR=0.434;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,25:55:99:726,0,796
1	62939634	rs1168007	C	T	1409.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-8.350e+02;SOR=0.784;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1438,105,0
1	62943264	rs1168008	C	T	1335.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-4.760e+02;SOR=2.059;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1364,99,0
1	62945418	rs1183260	A	G	301.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-7.497e+01;SOR=2.303;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:330,24,0
1	62953183	rs1168025	C	T	545.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-8.097e+01;SOR=3.383;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:574,45,0
1	62960250	rs1168041	T	C	414.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=0.00;SOR=4.977;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:443,33,0
1	62961928	rs1168038	T	C	580.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=0.00;SOR=5.670;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:609,45,0
1	62970184	rs1168027	T	C	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SB=0.00;SOR=4.804;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
1	62973795	rs1184865	A	G	952.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-7.697e+01;SOR=4.332;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:981,75,0
1	62976472	rs1168043	T	G	730.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=0.00;SOR=5.994;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:759,57,0
1	63001120	rs1168018	A	C	2128.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-6.880e+02;SOR=2.035;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2157,160,0
1	63027411	rs5774610	AG	A	1266.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.84;SB=-4.520e+02;SOR=1.460;VQSLOD=5.64;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,29:30:87:1304,87,0
1	63113511	rs746735	C	A	1477.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-3.250e+02;SOR=2.687;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1506,111,0
1	63113719	rs1168089	T	C	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-4.276e+01;SOR=3.442;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:410,30,0
1	63284830	rs17123872	G	A	1266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.522;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.311;SB=-6.190e+02;SOR=0.660;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,47:100:99:1295,0,1370
1	63306960	rs12743698	C	T	355.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=0.00;SOR=4.804;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:384,30,0
1	63307303	rs3737892	A	G	629.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-1.195e+02;SOR=2.948;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:658,48,0
1	63339963	.	CAAAAAAAAA	C	867.74	PASS	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=32.14;RPA=26,17;RU=A;SB=0.00;SOR=4.615;STR;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:10:27:905,27,0
1	63788682	rs72912791	C	T	261.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.19;ReadPosRankSum=-1.036;SB=-3.177e+01;SOR=1.802;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,9:10:14:290,0,14
1	63789015	rs2274188	G	T	353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.904;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=1.458;SB=-4.176e+01;SOR=0.481;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:382,0,168
1	63836513	rs34542411	C	G	617.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=0.280;SB=-4.276e+01;SOR=0.487;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,19:30:99:646,0,363
1	63871881	rs1012872	A	G	1857.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-8.340e+02;SOR=1.460;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1886,135,0
1	63872871	rs6588028	A	G	1255.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-4.070e+02;SOR=1.802;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:96:1284,96,0
1	63881552	rs4630153	C	T	644.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.03;SB=-3.520e+02;SOR=1.179;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:673,48,0
1	63912563	rs3838450	ACAATT	A	2350.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-5.960e+02;SOR=2.165;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:37:96:2388,96,0
1	63955596	.	C	T	446.77	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.54;SB=0.00;SOR=5.136;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:475,36,0
1	63991140	rs9436686	T	C	687.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.39;SB=0.00;SOR=6.091;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:716,54,0
1	63991267	rs217478	T	C	2276.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-1.034e+03;SOR=1.288;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2305,169,0
1	63999087	rs217454	T	C	868.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.20;SB=-4.276e+01;SOR=4.892;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:897,66,0
1	64015217	rs217485	G	A	1706.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-3.590e+02;SOR=2.970;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1735,129,0
1	64017234	rs217484	G	C	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=0.00;SOR=4.804;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:412,30,0
1	64017262	rs35587501	GA	G	268.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;RPA=11,10;RU=A;SB=0.00;SOR=5.136;STR;VQSLOD=4.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:306,36,0
1	64095836	rs76415925	G	C	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=1.134;SB=-1.040e+02;SOR=0.693;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:240,0,249
1	64100478	rs6588052	A	T	1319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.157;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.028;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-0.374;SB=-2.270e+02;SOR=0.929;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,46:89:99:1348,0,1229
1	64102114	rs2269248	A	G	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.337;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.767;SB=-1.765e+00;SOR=1.292;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:394,0,500
1	64104307	rs11581836	C	T	638.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.178;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.173;HaplotypeScore=1.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.446;SB=-1.860e+02;SOR=0.916;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,25:53:99:667,0,744
1	64254734	.	C	T	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=50.09;MQ0=1;MQRankSum=-4.521;QD=2.45;ReadPosRankSum=-0.195;SB=-3.900e+01;SOR=1.022;VQSLOD=0.436;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,9:24:87:87,0,405
1	64254798	.	G	T	38.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8327;MLEAC=1;MLEAF=0.500;MQ=51.95;MQ0=1;MQRankSum=-3.602;QD=2.42;ReadPosRankSum=2.417;SB=-9.732e-01;SOR=1.179;VQSLOD=0.246;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:67:67,0,367
1	64254813	.	T	C	36.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.134;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=51.95;MQ0=1;MQRankSum=-3.602;QD=2.30;ReadPosRankSum=2.417;SB=-9.732e-01;SOR=1.179;VQSLOD=0.381;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:65:65,0,385
1	64474804	rs285399	C	T	882.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-3.200e+02;SOR=2.019;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:69:911,69,0
1	64515379	rs1772626	C	T	1896.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-7.440e+02;SOR=1.453;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1925,144,0
1	64608329	rs2762833	G	T	2506.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-1.259e+03;SOR=1.402;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2535,184,0
1	64624612	rs4362024	G	A	1250.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-1.841e+02;SOR=3.500;VQSLOD=5.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1279,99,0
1	64624842	rs6668545	A	G	1472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.860;HaplotypeScore=3.6802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=-0.822;SB=-7.230e+02;SOR=0.516;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,52:86:99:1501,0,983
1	64669567	rs2806529	A	T	593.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.412;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.326;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=-0.326;SB=-2.800e+02;SOR=0.412;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,22:40:99:622,0,550
1	64676339	rs186010531	T	C	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.261;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.40;ReadPosRankSum=-0.684;SB=-3.200e+01;SOR=0.287;VQSLOD=8.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,10:37:99:302,0,891
1	64680654	rs7534166	G	A	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=-0.867;SB=-1.070e+02;SOR=0.693;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,14:20:99:415,0,159
1	64680682	rs825174	C	G	500.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.47;SB=-4.276e+01;SOR=3.912;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:529,39,0
1	64698411	rs2029868	T	C	671.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.810;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.880;HaplotypeScore=6.0729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=1.609;SB=-6.400e+01;SOR=1.312;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,22:41:99:700,0,508
1	64709891	rs10789152	A	G	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.928;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.426;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-0.326;SB=-2.760e+02;SOR=1.277;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,32:60:99:944,0,642
1	64726414	rs705542	A	C	1177.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-3.930e+02;SOR=2.012;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1206,87,0
1	65016349	rs2164571	A	T	3020.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-1.526e+03;SOR=1.053;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3049,223,0
1	65045602	rs5774708	TA	T	147.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.21;RPA=12,11;RU=A;ReadPosRankSum=0.222;SB=-6.400e+01;SOR=0.551;STR;VQSLOD=9.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,10:18:99:185,0,162
1	65068638	rs6665437	T	C	2469.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-1.037e+03;SOR=1.721;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2498,190,0
1	65098148	rs893080	T	C	461.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=0.00;SOR=5.136;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:490,36,0
1	65099978	rs2118102	G	A	933.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-2.001e+02;SOR=2.468;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:962,72,0
1	65107372	rs6664905	C	T	505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-1.165e+02;SOR=2.712;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:534,39,0
1	65107850	rs893074	T	C	282.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.71;SB=-8.397e+01;SOR=1.802;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:311,24,0
1	65113351	rs7534210	T	C	639.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-3.876e+01;SOR=4.407;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:668,51,0
1	65113568	rs6588100	T	C	3763.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.64;SB=-2.342e+03;SOR=0.709;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3792,283,0
1	65118064	.	A	G	355.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.640;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.17;ReadPosRankSum=-1.052;SB=-1.765e+00;SOR=1.751;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:384,0,328
1	65234216	rs373849152	AT	A	254.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;DB;DP=25;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.61;RPA=12,11;RU=T;ReadPosRankSum=0.967;SB=-1.440e+02;SOR=0.412;STR;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:25:99:292,0,222
1	65243466	rs41285400	A	G	1187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=4.826;HaplotypeScore=2.4947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=0.099;SB=-7.760e+02;SOR=0.627;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,50:108:99:1216,0,1725
1	65255018	rs2500232	G	A	1671.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.661;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-0.078;SB=-2.610e+02;SOR=0.711;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,60:113:99:1700,0,1609
1	65270549	rs12134044	A	G	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.314;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.550;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.35;ReadPosRankSum=0.351;SB=-1.160e+02;SOR=1.180;VQSLOD=7.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,11:31:99:256,0,664
1	65280620	rs3790529	G	A	538.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=0.453;SB=-3.001e+01;SOR=0.593;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:567,0,657
1	65301238	rs2274945	A	G	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.241;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=1.816;SB=-6.100e+01;SOR=1.609;VQSLOD=6.33;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,18:25:99:511,0,152
1	65303888	rs79649323	T	C	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.989;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=0.342;SB=-3.200e+01;SOR=1.981;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:323,0,193
1	65311214	rs3737139	G	C	862.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.910;HaplotypeScore=1.8533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.565;SB=-5.120e+02;SOR=0.583;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,33:71:99:891,0,999
1	65321250	rs2230586	G	A	794.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.448;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.226;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-0.647;SB=-2.710e+02;SOR=1.103;VQSLOD=7.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,30:79:99:823,0,1322
1	65321388	rs310229	G	A	1100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.607;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.761;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-0.558;SB=-6.000e+02;SOR=0.479;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,39:89:99:1129,0,1442
1	65321419	rs11579283	G	A	813.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.895;HaplotypeScore=2.6732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.479;SB=-4.340e+02;SOR=0.509;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,32:76:99:842,0,1262
1	65325970	rs310224	C	T	2428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.687;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.15;MQ0=0;MQRankSum=1.179;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=-0.807;SB=-7.840e+02;SOR=0.706;VQSLOD=0.753;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:57,84:141:99:2457,0,1439
1	65326098	rs200133188	CATGCATTT	C	1218.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.94;MQ0=0;MQRankSum=3.454;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=1.826;SB=-7.276e+01;SOR=0.278;VQSLOD=2.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,17:36:99:1256,0,988
1	65326144	rs189567887	T	C	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=62.45;MQ0=0;MQRankSum=1.155;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=-0.845;SB=0.00;SOR=2.147;VQSLOD=2.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,10:13:74:367,0,74
1	65335095	rs11585932	T	C	1376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.453;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.698;HaplotypeScore=4.6138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.164;SB=-6.320e+02;SOR=0.818;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:72,51:123:99:1405,0,1855
1	65690461	rs4915685	G	A	527.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.17;SB=-1.195e+02;SOR=2.448;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:556,42,0
1	65830297	.	G	T	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.8886;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=-0.381;QD=9.79;ReadPosRankSum=-0.159;SB=-1.765e+00;SOR=1.609;VQSLOD=1.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,7:20:99:224,0,392
1	65830299	.	T	G	116.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.458;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.8886;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=-0.811;QD=5.56;ReadPosRankSum=-0.703;SB=-9.732e-01;SOR=0.892;VQSLOD=1.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,5:21:99:145,0,525
1	65844963	rs3818449	A	G	869.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.040;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=-1.933;SB=-3.160e+02;SOR=0.754;VQSLOD=7.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:64,34:98:99:898,0,1756
1	65845042	rs2296480	A	T	1237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.818;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.654;HaplotypeScore=1.8991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-1.505;SB=-6.730e+02;SOR=0.800;VQSLOD=6.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:84,52:136:99:1266,0,2444
1	65845076	rs2296481	C	T	1074.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.635;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=6.828;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=-0.635;SB=-5.710e+02;SOR=0.778;VQSLOD=6.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:81,50:131:99:1103,0,2461
1	65852870	rs9436725	A	G	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.321;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.41;ReadPosRankSum=0.779;SB=-1.352e-01;SOR=2.546;VQSLOD=5.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:90:90,0,288
1	65858088	rs6588144	T	C	636.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=0.102;SB=-3.310e+02;SOR=0.701;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,28:64:99:665,0,998
1	65858145	rs4325172	G	A	713.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.095;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-0.076;SB=-3.560e+02;SOR=0.690;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,30:63:99:742,0,1040
1	65860687	rs4582839	A	C	1151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.823;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=3.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-0.603;SB=-6.880e+02;SOR=0.641;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,43:87:99:1180,0,1099
1	65867391	rs4592284	C	G	780.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.485;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.577;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=1.653;SB=-1.810e+02;SOR=1.214;VQSLOD=7.32;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:44,27:71:99:809,0,1314
1	65886398	rs3790435	T	C	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.742;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=0.264;SB=-1.120e+02;SOR=0.527;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:325,0,260
1	65886448	rs3790434	T	C	529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-0.368;SB=-1.920e+02;SOR=0.573;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,22:38:99:558,0,416
1	65887013	rs12145690	A	C	961.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.585;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-1.705;SB=-4.780e+02;SOR=0.653;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,37:83:99:990,0,1159
1	66036441	rs1137100	A	G	691.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.002;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.900;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.101;SB=-3.980e+02;SOR=0.337;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,29:55:99:720,0,717
1	66036501	rs2186248	G	T	1014.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.73;SB=-2.670e+02;SOR=2.376;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1043,78,0
1	66058513	rs1137101	A	G	1202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.101;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.723;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=0.076;SB=-4.660e+02;SOR=0.547;VQSLOD=7.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:80,51:131:99:1231,0,2337
1	66062325	rs3828034	A	G	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.619;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.277;SB=0.00;SOR=0.616;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:344,0,386
1	66064293	rs3762273	A	C	790.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.638;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=5.427;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=0.745;SB=-1.115e+02;SOR=0.132;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,26:41:99:819,0,472
1	66071082	rs79035087	T	A	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=1.889;SB=0.00;SOR=0.836;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:244,0,147
1	66075952	rs1805094	G	C	606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.586;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.055;SB=-1.610e+02;SOR=1.329;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:635,0,628
1	66083537	rs4655564	G	A	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.224;SB=0.00;SOR=0.582;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:224,0,285
1	66085525	rs3790438	T	A	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.912;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=0.984;SB=-3.377e+01;SOR=0.086;VQSLOD=7.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:160,0,297
1	66085574	rs3790439	T	A	793.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-2.001e+02;SOR=2.584;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:822,63,0
1	66087301	rs4655743	G	C	578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.00;SB=-3.876e+01;SOR=4.174;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:607,45,0
1	66088701	rs12067936	C	A	1721.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-8.760e+02;SOR=1.278;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1750,126,0
1	66091656	rs145580828	ACACT	A	922.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;DB;DP=31;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=1.028;SB=-1.360e+02;SOR=1.214;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:960,0,1021
1	66091813	rs200779194	C	G	617.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.884;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.87;ReadPosRankSum=0.010;SB=-2.480e+02;SOR=0.582;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,23:48:99:646,0,701
1	66094928	rs1938499	A	T	129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.474;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.039;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.21;ReadPosRankSum=1.038;SB=-1.352e-01;SOR=2.833;VQSLOD=5.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:158,0,326
1	66099013	rs17415296	C	A	525.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.165;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.301;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.831;SB=-2.701e+01;SOR=1.463;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:554,0,480
1	66102257	rs1805096	G	A	2664.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-1.014e+03;SOR=1.468;VQSLOD=7.67;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2693,205,0
1	66731886	rs6588193	G	C	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.214;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.569;SB=-3.777e+01;SOR=0.275;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:288,0,239
1	66732386	rs6588194	G	A	1000.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.574;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=2.408;HaplotypeScore=5.6007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.07;ReadPosRankSum=-0.649;SB=-7.020e+02;SOR=0.444;VQSLOD=6.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:77,47:126:99:1029,0,2126
1	66732424	rs371534279	T	C	967.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.708;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-0.246;SB=-6.050e+02;SOR=0.794;VQSLOD=5.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:77,43:120:99:996,0,2018
1	66732529	rs6701329	A	T	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=8.797;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.87;ReadPosRankSum=-0.205;SB=-1.030e+02;SOR=0.056;VQSLOD=6.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,14:39:99:374,0,828
1	66829262	rs783039	A	G	590.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.536;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.367;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=0.388;SB=-1.880e+02;SOR=1.136;VQSLOD=7.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,24:65:99:619,0,1145
1	66831256	.	C	CA	710.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DP=43;ExcessHet=3.0103;FS=5.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.53;RPA=2,3;RU=A;ReadPosRankSum=1.182;SB=-2.440e+02;SOR=0.201;STR;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:748,0,651
1	66831370	rs783036	G	A	2417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-1.568e+03;SOR=0.742;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2446,178,0
1	67094336	rs4655646	G	A	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.61;ReadPosRankSum=0.453;SB=0.00;SOR=1.609;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:390,0,152
1	67109277	rs17490057	G	C	802.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.324;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=9.944;HaplotypeScore=2.7603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.000;SB=-2.004e+01;SOR=2.822;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:831,0,734
1	67125898	.	G	A	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-2.638;SB=0.00;SOR=0.223;VQSLOD=7.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:87:87,0,220
1	67125932	.	G	GAGGA	233.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.869;POSITIVE_TRAIN_SITE;QD=13.48;RPA=2,3;RU=AGGA;ReadPosRankSum=-1.783;SB=0.00;SOR=0.368;STR;VQSLOD=3.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:271,0,463
1	67125952	rs12746750	A	T	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=1.416;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=0.792;SB=-2.801e+01;SOR=0.941;VQSLOD=2.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,10:28:99:272,0,559
1	67126114	rs12094526	A	G	585.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.891;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.01;ReadPosRankSum=0.178;SB=-3.270e+02;SOR=0.660;VQSLOD=9.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,23:65:99:614,0,1079
1	67133111	rs11208941	T	C	882.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.678;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-0.941;SB=-4.050e+02;SOR=0.704;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,28:65:99:911,0,1000
1	67138877	rs35377023	AG	A	499.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=0.478;SB=-9.400e+01;SOR=0.976;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:537,0,319
1	67145322	rs10889644	C	A	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.001;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=-0.261;SB=-1.400e+02;SOR=0.495;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:322,0,126
1	67149706	rs10749764	G	C	396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.658;SB=0.00;SOR=0.518;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:425,0,570
1	67154730	rs139348429	CAA	C	319.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;RPA=17,15;RU=A;ReadPosRankSum=0.277;SB=-1.670e+02;SOR=0.608;STR;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:21:99:357,0,151
1	67160336	rs2146904	A	G	773.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=0.421;SB=-2.160e+02;SOR=0.484;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,26:49:99:802,0,613
1	67160814	rs1325267	C	T	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=1.053;SB=-1.765e+00;SOR=0.804;VQSLOD=9.63;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:124,0,292
1	67195184	rs1032635	C	G	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-1.192;SB=-1.380e+02;SOR=0.534;VQSLOD=8.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,17:41:99:483,0,729
1	67195192	rs1032634	C	G	419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-0.900;SB=-1.330e+02;SOR=0.515;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,16:39:99:448,0,691
1	67208622	rs17440885	A	G	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=-0.989;SB=-1.360e+02;SOR=0.936;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:480,0,258
1	67242979	.	C	T	1331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.307;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.749;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.45;ReadPosRankSum=1.840;SB=-9.030e+02;SOR=0.612;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,56:99:99:1360,0,1109
1	67266756	rs549148	T	A	2374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-1.379e+03;SOR=0.920;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2403,175,0
1	67288045	rs482082	C	T	678.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.723;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=23.094;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=0.235;SB=-1.193e+00;SOR=3.877;VQSLOD=3.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,22:59:99:707,0,908
1	67292473	rs67495325	A	AT	1135.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;DB;DP=64;ExcessHet=3.0103;FS=6.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.727;SB=-1.530e+02;SOR=1.700;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,28:64:99:1173,0,1350
1	67292478	rs36067642	T	A	902.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.438;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=8.523;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=1.108;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-0.346;SB=-9.800e+01;SOR=2.039;VQSLOD=9.400e-03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,31:67:99:931,0,972
1	67303303	rs6698076	A	G	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=-0.468;SB=-4.276e+01;SOR=0.098;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:254,0,442
1	67306054	rs11208966	C	A	473.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.144;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-1.761;SB=-4.176e+01;SOR=0.163;VQSLOD=7.99;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,16:34:99:502,0,569
1	67313249	rs57010209	G	A	1264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.545;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=4.237;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=0.793;SB=-7.360e+02;SOR=0.510;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,46:83:99:1293,0,969
1	67313793	rs79498460	G	A	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.696;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.000;SB=0.00;SOR=0.392;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:263,0,391
1	67384906	rs371584077	C	T	920.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.001;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.05;ReadPosRankSum=0.477;SB=-4.580e+02;SOR=0.836;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,36:54:99:949,0,537
1	67390416	rs3008858	G	C	1720.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.816;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.697;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=0.030;SB=-9.960e+02;SOR=0.822;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,65:117:99:1749,0,1417
1	67390468	rs1886686	C	G	1261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.147;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.978;HaplotypeScore=1.8218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=-0.082;SB=-2.990e+02;SOR=0.861;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,42:83:99:1290,0,1145
1	67436446	rs4553158	A	G	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=0.000;SB=-3.500e+01;SOR=1.270;VQSLOD=10.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:254,0,127
1	67438535	rs12131222	A	T	892.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.081;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.333;SB=-2.270e+02;SOR=0.964;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,31:67:99:921,0,963
1	67442210	rs11208978	C	T	370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.715;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=7.076;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-0.481;SB=-2.103e+01;SOR=2.303;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:399,0,536
1	67442275	rs11208979	C	T	623.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.283;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=0.060;SB=-2.750e+02;SOR=0.716;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,27:65:99:652,0,1065
1	67447450	rs12039172	A	G	768.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.623;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=0.776;SB=-1.760e+02;SOR=0.772;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:797,0,542
1	67487119	rs2065002	C	A	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.862;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.149;SB=-2.300e+02;SOR=0.818;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,23:47:99:589,0,719
1	67508080	rs10546548	CCACT	C	1196.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.235;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=-1.091;SB=-4.000e+02;SOR=0.588;VQSLOD=3.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,21:53:99:1234,0,2059
1	67512903	rs1024229	G	T	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.669;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=0.325;SB=-5.500e+01;SOR=1.188;VQSLOD=7.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,12:34:99:334,0,557
1	67512920	rs1024230	A	C	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.865;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.717;SB=-5.000e+01;SOR=1.911;VQSLOD=6.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,13:35:99:369,0,585
1	67515309	rs2755257	C	T	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=-2.189;SB=0.00;SOR=1.085;VQSLOD=9.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:204,0,132
1	67558739	rs6588237	C	T	669.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.033;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=-1.273;SB=-2.070e+02;SOR=0.680;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,24:37:99:698,0,333
1	67560897	rs10889653	A	G	600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.690;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.161;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-0.399;SB=-2.850e+02;SOR=0.395;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,28:57:99:629,0,817
1	67560956	rs11208997	C	T	812.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.380;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=2.797;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=1.064;SB=-5.940e+02;SOR=0.442;VQSLOD=7.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,40:90:99:841,0,1324
1	67562106	rs6670381	G	T	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.113;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=1.785;SB=-1.765e+00;SOR=1.981;VQSLOD=6.28;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:311,0,239
1	67568824	rs1885276	G	T	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.313;SB=0.00;SOR=0.473;VQSLOD=10.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:205,0,254
1	67577367	rs6588240	A	T	371.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.186;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.172;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=-2.522;SB=-2.552e+02;SOR=0.223;VQSLOD=6.80;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,16:21:99:400,0,145
1	67579386	rs2144656	A	G	406.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.837;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.637;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-0.576;SB=-1.790e+02;SOR=0.368;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:435,0,376
1	67591660	rs4655520	G	A	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQ0=0;MQRankSum=1.169;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=0.607;SB=0.00;SOR=1.371;VQSLOD=3.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,11:17:99:387,0,188
1	67633812	rs1884444	G	T	2313.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4948;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-1.308e+03;SOR=1.124;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2342,169,0
1	67672765	rs7539625	G	A	2072.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-6.530e+02;SOR=2.093;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2101,160,0
1	67685387	rs7530511	T	C	2416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-1.096e+03;SOR=1.439;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2445,187,0
1	67705574	rs10789229	C	T	939.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-1.553e+02;SOR=2.910;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:968,72,0
1	67705726	rs10889671	A	G	2318.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.439e+03;SOR=0.746;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2347,172,0
1	67795319	rs1495963	T	C	3539.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-2.073e+03;SOR=0.838;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3568,277,0
1	67796258	rs11463498	G	GT	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;RPA=12,13;RU=T;ReadPosRankSum=0.493;SB=0.00;SOR=2.303;STR;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:20:180,0,20
1	67852141	rs12138812	A	G	1653.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-1.941e+02;SOR=3.816;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1682,123,0
1	67852335	rs2228420	G	A	3736.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-2.248e+03;SOR=0.916;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3765,280,0
1	67852549	.	T	C	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=67.48;MQ0=0;MQRankSum=-1.949;QD=14.32;ReadPosRankSum=-0.449;SB=0.00;SOR=0.818;VQSLOD=0.884;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:243,0,234
1	67861520	rs2229546	C	A	1925.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=-7.100e+02;SOR=1.487;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1954,144,0
1	68151980	rs2759219	T	G	1356.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-2.740e+02;SOR=2.774;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1385,105,0
1	68173264	rs2295942	C	T	4620.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-2.856e+03;SOR=0.774;VQSLOD=5.50;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4649,340,0
1	68512658	rs376392133	C	T	1884.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.292;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.660;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.635;SB=-1.019e+03;SOR=0.791;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,68:128:99:1913,0,1517
1	68593131	rs4655776	C	G	959.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SB=-7.997e+01;SOR=4.407;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:988,75,0
1	68613933	rs2303949	C	T	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=4.046;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.96;ReadPosRankSum=-1.533;SB=-2.530e+02;SOR=0.470;VQSLOD=7.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,19:56:99:474,0,980
1	68614013	rs2566789	A	G	1379.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-8.390e+02;SOR=0.739;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1408,102,0
1	68619511	rs1430759	G	A	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.394;SB=0.00;SOR=0.582;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:229,0,284
1	68620998	rs2820488	C	G	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=-0.733;SB=0.00;SOR=0.582;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:239,0,285
1	68624878	rs3748705	C	T	1202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.328;SB=-5.410e+02;SOR=0.739;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,47:87:99:1231,0,1149
1	68628198	rs1808598	A	G	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.084;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=1.521;SB=-1.030e+02;SOR=0.790;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:209,0,178
1	68628201	rs1808599	C	T	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-1.116;SB=-6.100e+01;SOR=1.229;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:174,0,212
1	68628357	.	A	C	69.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-2.429;QD=3.49;ReadPosRankSum=-1.885;SB=-5.000e+01;SOR=0.877;VQSLOD=0.209;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:98:98,0,452
1	68628359	.	A	G	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-2.429;QD=2.44;ReadPosRankSum=-1.448;SB=-5.000e+01;SOR=0.877;VQSLOD=1.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:77:77,0,442
1	68628364	rs372455337	A	G	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.8141;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-2.429;QD=4.29;ReadPosRankSum=-1.052;SB=-5.100e+01;SOR=0.877;VQSLOD=1.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:114,0,447
1	68628372	.	G	C	96.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.273;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.9923;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-1.967;POSITIVE_TRAIN_SITE;QD=6.45;ReadPosRankSum=-1.175;SB=-5.700e+01;SOR=1.022;VQSLOD=2.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:20:99:125,0,323
1	68628391	rs111473349	A	G	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=0;MQRankSum=-2.164;QD=5.40;ReadPosRankSum=0.584;SB=-5.000e+01;SOR=1.022;VQSLOD=1.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:120,0,372
1	68628400	rs78215852	A	G	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.363;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=-2.068;QD=5.86;ReadPosRankSum=0.914;SB=-5.700e+01;SOR=0.836;VQSLOD=1.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:122,0,357
1	68628401	.	T	C	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.718;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=-2.068;QD=5.86;ReadPosRankSum=0.916;SB=-5.700e+01;SOR=0.836;VQSLOD=1.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:122,0,362
1	68628416	.	C	T	97.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=-2.311;QD=6.11;ReadPosRankSum=2.149;SB=-5.900e+01;SOR=0.883;VQSLOD=0.866;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:126,0,362
1	68628426	.	T	C	107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=-2.311;QD=6.74;ReadPosRankSum=1.477;SB=-5.900e+01;SOR=0.883;VQSLOD=1.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:136,0,287
1	68628427	.	G	A	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=-2.311;QD=6.49;ReadPosRankSum=1.476;SB=-5.900e+01;SOR=0.883;VQSLOD=0.926;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:132,0,324
1	68628440	.	T	G	107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.524;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=-2.421;QD=6.34;ReadPosRankSum=2.176;SB=-5.900e+01;SOR=0.735;VQSLOD=0.799;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:136,0,294
1	68628448	rs77686231	A	G	102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.251;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=0;MQRankSum=-2.526;QD=5.71;ReadPosRankSum=2.308;SB=-6.000e+01;SOR=0.619;VQSLOD=0.299;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,6:18:99:131,0,329
1	68628463	rs80130925	T	C	62.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.14;MQ0=0;MQRankSum=-2.323;QD=4.18;ReadPosRankSum=0.982;SB=-2.501e+01;SOR=0.582;VQSLOD=1.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:91:91,0,323
1	68628465	rs78704661	T	C	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.14;MQ0=0;MQRankSum=-2.323;QD=4.05;ReadPosRankSum=0.589;SB=-2.501e+01;SOR=0.582;VQSLOD=1.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:89:89,0,323
1	68652084	rs2772297	T	C	563.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=0.00;SOR=5.549;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:592,45,0
1	68660205	rs1036066	A	C	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-1.915;SB=-3.577e+01;SOR=0.160;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:141,0,173
1	68896644	rs932783	G	A	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.781;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.305;SB=-1.765e+00;SOR=1.148;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:322,0,445
1	68905358	rs1925955	G	C	814.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.332;HaplotypeScore=5.4806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=0.426;SB=-1.930e+02;SOR=1.027;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,30:50:99:843,0,509
1	68943436	rs1924542	G	A	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.38;ReadPosRankSum=1.134;SB=-6.200e+01;SOR=0.368;VQSLOD=9.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:89:89,0,383
1	68943442	rs3790476	A	G	55.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.94;ReadPosRankSum=1.112;SB=-6.300e+01;SOR=0.313;VQSLOD=9.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:84:84,0,403
1	68943665	rs12119046	T	G	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.191;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=-1.031;SB=-1.860e+02;SOR=0.978;VQSLOD=7.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,15:38:99:398,0,710
1	68947318	.	C	CA	311.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;DP=38;ExcessHet=3.0103;FS=7.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.20;RPA=5,6;RU=A;ReadPosRankSum=1.439;SB=-5.600e+01;SOR=2.030;STR;VQSLOD=6.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,14:38:99:349,0,621
1	70034370	rs35356508	C	CCAGCCGCGTG	5085.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.75;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-1.673e+03;SOR=1.609;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:49:99:5123,138,0
1	70304758	rs12735430	A	G	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.697;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.865;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.88;ReadPosRankSum=-0.439;SB=-5.150e-01;SOR=2.012;VQSLOD=6.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:159,0,433
1	70397087	rs7530457	T	C	1417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.289;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=1.526;HaplotypeScore=1.8808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-0.535;SB=-6.770e+02;SOR=0.862;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,53:113:99:1446,0,1701
1	70573326	.	A	T	484.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.519;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.016;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.76;ReadPosRankSum=-1.331;SB=-9.732e-01;SOR=1.931;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,16:38:99:513,0,668
1	70587360	rs641909	C	T	527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.177;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.884;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=1.485;SB=-6.200e+01;SOR=1.287;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:556,0,514
1	70701257	.	A	G	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.126;SB=-8.400e+01;SOR=1.048;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:241,0,330
1	70887183	rs6413471	A	C	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.53;ReadPosRankSum=-0.491;SB=-4.276e+01;SOR=0.054;VQSLOD=7.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,8:24:99:209,0,564
1	70904523	rs372730812	T	TTGTG,TTGTGTG	2022.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.00;RPA=14,16,17;RU=TG;SB=-2.220e+02;SOR=3.407;STR;VQSLOD=5.17;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,11,19:44:99:2060,753,664,397,0,324
1	70996074	.	T	TA	280.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.36;RPA=11,12;RU=A;ReadPosRankSum=1.598;SB=-3.277e+01;SOR=0.199;STR;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:318,0,277
1	71318261	rs959	T	C	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=0.632;SB=0.00;SOR=0.330;VQSLOD=9.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:127,0,240
1	71328234	rs7533733	A	G	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.144;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=-0.082;SB=0.00;SOR=0.793;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:336,0,311
1	71331498	rs1409986	A	G	2262.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-9.870e+02;SOR=1.483;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2291,169,0
1	71334870	rs1536537	C	T	579.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.429;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.099;SB=-1.530e+02;SOR=1.402;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,18:44:99:608,0,679
1	71419499	rs571705	C	T	384.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-7.797e+01;SOR=2.833;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:413,33,0
1	71533287	rs66461782	A	T	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=0.469;SB=-6.500e+01;SOR=0.238;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:212,0,283
1	71537943	rs11209745	A	G	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.43;ReadPosRankSum=-0.624;SB=-1.300e+02;SOR=0.495;VQSLOD=9.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:221,0,496
1	71544079	rs10574763	CAAG	C	986.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.90;ReadPosRankSum=-1.478;SB=-1.910e+02;SOR=0.446;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:1024,0,974
1	72058367	rs1334004	C	T	908.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-1.603e+02;SOR=3.180;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:937,72,0
1	72058405	rs1334005	T	C	1665.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-2.870e+02;SOR=3.306;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1694,123,0
1	72058552	rs1413368	G	A	4068.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-2.500e+03;SOR=0.739;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4097,295,0
1	72242039	rs6424448	G	A	107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.605;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.13;ReadPosRankSum=-0.248;SB=-5.150e-01;SOR=1.371;VQSLOD=6.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,5:21:99:136,0,497
1	72740634	rs7549792	G	A	150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.393;SB=-1.080e+02;SOR=0.223;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:179,0,172
1	72747844	rs3101341	C	T	159.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-0.344;SB=0.00;SOR=0.569;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:188,0,248
1	74506942	rs79435376	G	A	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.483;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-0.926;SB=-2.501e+01;SOR=0.610;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:311,0,420
1	74507315	rs17094777	C	T	442.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.606;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.590;SB=-1.240e+02;SOR=0.668;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:471,0,561
1	74507711	rs7538410	T	G	507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-1.543e+02;SOR=2.179;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:536,39,0
1	74575182	rs1340472	C	T	1378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-5.110e+02;SOR=1.666;VQSLOD=7.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1407,108,0
1	74646514	rs6701961	C	T	734.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-1.603e+02;SOR=2.833;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:763,57,0
1	74648408	rs17094900	C	T	1072.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.443;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-1.037;SB=-5.870e+02;SOR=0.788;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1101,0,1179
1	74663814	rs1412825	C	G	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.191;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.066;SB=0.00;SOR=0.540;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:340,0,414
1	74664149	rs4422957	T	C	849.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.269;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.089;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.556;SB=-3.580e+02;SOR=0.530;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,32:58:99:878,0,641
1	74665493	rs792310	G	A	1107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.791;HaplotypeScore=3.5763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.138;SB=-5.050e+02;SOR=0.979;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,45:88:99:1136,0,1227
1	74669973	rs9425024	T	G	459.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=0.00;SOR=5.136;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:488,36,0
1	74671519	rs571848	A	G	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.844;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-0.176;SB=-3.400e+01;SOR=0.602;VQSLOD=10.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:307,0,339
1	74701950	rs532221	T	A	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.267;SB=-1.050e+02;SOR=0.538;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:315,0,234
1	74716515	.	C	CT	361.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;DP=80;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.40;RPA=16,17;RU=T;ReadPosRankSum=1.316;SB=-1.110e+02;SOR=0.337;STR;VQSLOD=6.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,23:80:99:399,0,607
1	74801864	rs11210450	A	G	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.170;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.48;ReadPosRankSum=0.662;SB=-1.352e-01;SOR=2.271;VQSLOD=6.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,7:31:99:198,0,657
1	74819077	rs6424586	T	G	1996.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-8.930e+02;SOR=1.402;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2025,144,0
1	74841173	rs2880795	A	C	1503.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-2.790e+02;SOR=2.885;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1532,111,0
1	74936374	rs596204	A	G	1437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-5.960e+02;SOR=1.508;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1466,108,0
1	74936454	rs491922	G	C	1190.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.02;SB=-2.750e+02;SOR=2.649;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1219,90,0
1	74937749	rs3765674	A	G	3707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-1.962e+03;SOR=1.022;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3736,268,0
1	74941210	rs648614	C	T	4542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-2.072e+03;SOR=1.246;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4571,331,0
1	74941293	rs649058	G	A	5892.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-3.438e+03;SOR=0.819;VQSLOD=3.66;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,200:200:99:5921,433,0
1	75005776	rs6656785	A	G	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.137;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=0.851;SB=0.00;SOR=0.582;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:241,0,227
1	75006076	rs3845348	G	A	938.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=-8.097e+01;SOR=4.332;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:967,75,0
1	75009699	rs45520236	T	C	985.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.301;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=5.754;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=2.806;SB=-2.340e+02;SOR=1.698;VQSLOD=5.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,32:63:99:1014,0,880
1	75036783	rs9326115	T	C	2054.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;SB=-7.710e+02;SOR=1.467;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2083,157,0
1	75036812	rs9326116	C	T	2399.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-1.264e+03;SOR=1.012;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2428,178,0
1	75037845	rs12723334	A	G	979.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-4.940e+02;SOR=0.906;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:78:1008,78,0
1	75038228	rs11580409	A	C	1427.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.20;SB=-5.650e+02;SOR=1.609;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1456,105,0
1	75065525	rs137958677	G	A	625.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.930;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-0.810;SB=-2.920e+02;SOR=0.673;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,22:54:99:654,0,785
1	75097499	rs137917442	G	A	1043.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.766;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-0.116;SB=-6.490e+02;SOR=0.601;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,41:95:99:1072,0,1400
1	75172756	rs10601033	TA	T	775.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.523;DB;DP=51;ExcessHet=3.0103;FS=3.667;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;MQRankSum=0.370;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.47;RPA=14,13;RU=A;ReadPosRankSum=0.220;SB=-1.256e+02;SOR=2.441;STR;VQSLOD=0.136;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,39:51:37:813,37,0
1	75175664	rs2032969	G	A	443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=0.00;SOR=5.136;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:472,36,0
1	75175886	rs3819946	T	C	3703.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=-2.479e+03;SOR=0.757;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3732,268,0
1	75190452	rs1051122	C	T	1228.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-6.630e+02;SOR=1.022;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1257,93,0
1	75199152	rs277373	C	T	2503.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-8.320e+02;SOR=1.905;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2532,196,0
1	75199214	rs745108	G	A	1728.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-5.500e+02;SOR=2.049;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1757,126,0
1	75199279	rs28563168	G	A	985.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-2.401e+02;SOR=2.546;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:75:1014,75,0
1	75199299	rs28568334	C	G	758.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;SB=-1.533e+02;SOR=2.737;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:787,57,0
1	75214441	rs1133891	A	G	1281.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.48;SB=-8.020e+02;SOR=0.737;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:96:1310,96,0
1	75603055	rs1526503	A	G	1624.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=-7.060e+02;SOR=1.390;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1653,120,0
1	75609049	rs12041465	A	C	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.774;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.741;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=0.069;SB=-5.150e-01;SOR=2.041;VQSLOD=6.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,10:29:99:283,0,617
1	75614380	rs35220110	CT	C	63.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.35;RPA=14,13;RU=T;ReadPosRankSum=-1.057;SB=-1.417e+01;SOR=1.085;STR;VQSLOD=8.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:22:99:101,0,246
1	75622616	rs941032	C	T	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.69;ReadPosRankSum=0.749;SB=-2.320e+02;SOR=0.683;VQSLOD=8.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,17:56:99:403,0,1066
1	75626420	rs2462955	A	T	931.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-7.397e+01;SOR=4.255;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:960,72,0
1	75672134	rs12135977	T	C	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.278;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=-0.172;SB=0.00;SOR=1.981;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:79:325,0,79
1	75672376	rs1948874	A	G	1193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.805;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.795;SB=-7.090e+02;SOR=0.577;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,47:88:99:1222,0,1085
1	75679569	.	C	CT	193.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=36;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.68;RPA=10,11;RU=T;ReadPosRankSum=1.551;SB=-5.000e+01;SOR=0.297;STR;VQSLOD=6.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,11:36:99:231,0,374
1	75680545	rs688513	T	G	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.506;SB=-7.100e+01;SOR=0.223;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:202,0,269
1	75680565	rs688539	G	A	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.705;SB=-6.800e+01;SOR=0.495;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:173,0,170
1	75681351	rs594470	A	T	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.063;SB=0.00;SOR=0.473;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:196,0,241
1	75681511	rs595009	T	C	3399.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-2.159e+03;SOR=0.896;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3428,244,0
1	75684529	rs610159	A	G	530.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=0.00;SOR=5.421;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:559,42,0
1	75685643	rs12042874	T	C	957.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-7.297e+01;SOR=4.174;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:986,72,0
1	75708522	.	G	GA	1009.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;DP=83;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.62;RPA=9,10;RU=A;ReadPosRankSum=-0.299;SB=-2.630e+02;SOR=0.492;STR;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,43:83:99:1047,0,721
1	75716925	rs588098	C	T	2941.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-1.437e+03;SOR=1.345;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2970,220,0
1	75740845	rs1144298	A	G	1116.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-2.780e+02;SOR=2.649;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1145,87,0
1	75766186	rs623850	G	A	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=0.929;SB=0.00;SOR=1.179;VQSLOD=10.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:281,0,166
1	75823084	rs1249833	C	T	406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-3.677e+01;SOR=3.442;VQSLOD=7.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:435,33,0
1	75862526	rs1249813	C	A	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-1.616;SB=0.00;SOR=0.446;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:157,0,248
1	76047910	rs1831701	G	A	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.57;ReadPosRankSum=-1.952;SB=-5.900e+01;SOR=0.693;VQSLOD=8.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:123,0,334
1	76194229	rs11316888	GT	G	1285.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;RPA=4,3;RU=T;SB=-2.141e+02;SOR=3.202;STR;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:42:99:1323,117,0
1	76194306	rs1146572	A	G	492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.61;SB=0.00;SOR=5.283;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:521,39,0
1	76234886	rs1146593	A	G	1083.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-5.240e+02;SOR=0.941;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1112,81,0
1	76251746	rs1146632	T	C	576.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.07;SB=0.00;SOR=5.670;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:605,45,0
1	76251831	rs138780251	C	A	712.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-1.882;SB=-6.800e+01;SOR=0.788;VQSLOD=8.80;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,24:46:99:741,0,717
1	76252011	rs1146634	G	A	3779.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.935e+03;SOR=0.828;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3808,280,0
1	76252687	rs1146636	T	C	587.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-1.791e+02;SOR=1.981;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:616,45,0
1	76253045	.	T	TA	218.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;DP=15;ExcessHet=3.0103;FS=11.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.58;RPA=1,2;RU=A;ReadPosRankSum=0.563;SB=-2.657e-01;SOR=4.174;STR;VQSLOD=4.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:256,0,299
1	76254726	rs1498311	G	T	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.683;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-0.869;SB=0.00;SOR=0.346;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:247,0,468
1	76255613	rs11588643	A	G	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.784;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.400;SB=-1.760e+02;SOR=0.368;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,16:38:99:456,0,587
1	76257892	rs12703	A	T	2429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-1.030e+03;SOR=1.463;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2458,178,0
1	76262523	rs721204	G	A	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.188;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=0.669;SB=-2.701e+01;SOR=1.302;VQSLOD=9.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,9:22:99:226,0,371
1	76269372	rs5745323	T	C	356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=1.066;SB=0.00;SOR=0.892;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:385,0,299
1	76269439	rs5745324	G	A	693.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.523;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.981;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=-0.915;SB=-6.597e+01;SOR=0.171;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,23:39:99:722,0,536
1	76269460	rs5745325	G	A	725.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.192;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-1.615;SB=-1.230e+02;SOR=0.801;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,27:57:99:754,0,933
1	76272654	rs5745328	A	T	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.555;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=0.314;SB=-1.420e+02;SOR=1.185;VQSLOD=7.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,20:54:99:463,0,845
1	76280543	rs1144339	A	G	462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-1.553e+02;SOR=1.765;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:491,36,0
1	76313874	rs2047435	C	T	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=11.027;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.13;ReadPosRankSum=0.546;SB=-7.297e+01;SOR=0.011;VQSLOD=5.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,6:21:99:115,0,482
1	76333334	rs191164800	G	A	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.860;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.214;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=-0.356;SB=-7.197e+01;SOR=0.105;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:313,0,279
1	76344011	rs1493367	C	A	932.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-2.301e+02;SOR=2.546;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:961,72,0
1	76344711	rs5745449	A	T	2171.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-1.059e+03;SOR=1.340;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2200,160,0
1	76344856	rs5745451	T	C	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.872;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=6.338;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=1.124;SB=-1.417e+01;SOR=1.981;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,15:41:99:475,0,717
1	76344920	rs5745453	G	A	485.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=0.00;SOR=5.283;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:514,39,0
1	76346920	rs67599421	C	CAT	2616.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.17;SB=-7.260e+02;SOR=2.110;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2654,138,0
1	76349534	rs5745485	C	G	804.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.242;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.581;SB=-1.760e+02;SOR=0.954;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,30:54:99:833,0,625
1	76356648	rs5745507	G	A	523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.20;SB=0.00;SOR=5.421;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:552,42,0
1	76363505	rs2029680	A	C	471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.924;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=0.647;SB=-2.901e+01;SOR=1.508;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,15:23:99:500,0,217
1	76378275	rs5745547	G	C	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.465;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=-0.735;SB=0.00;SOR=1.473;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:361,0,161
1	76378357	rs71690142	ATAT	A	991.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.35;MQ0=0;MQRankSum=1.919;QD=20.24;ReadPosRankSum=-2.513;SB=-2.200e+02;SOR=0.673;VQSLOD=1.88;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,29:49:99:1029,0,408
1	76378361	rs5020911	T	A	596.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.616;DB;DP=51;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=73.4839;MLEAC=1;MLEAF=0.500;MQ=61.29;MQ0=0;MQRankSum=-2.182;QD=11.94;ReadPosRankSum=1.214;SB=-1.920e+02;SOR=0.759;VQSLOD=0.294;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,24:50:99:625,0,728
1	76608491	rs289686	T	C	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.741;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-0.290;SB=-9.700e+01;SOR=1.584;VQSLOD=7.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,11:24:99:264,0,398
1	76608691	rs12064337	G	T	598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.328;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.280;SB=-1.090e+02;SOR=1.445;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,22:48:99:627,0,778
1	76608777	rs184095	C	T	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.094;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.662;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.178;SB=-5.150e-01;SOR=3.056;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:263,0,254
1	76878156	rs17098942	C	T	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.984;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=0.000;SB=-9.732e-01;SOR=1.688;VQSLOD=7.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:193,0,333
1	77093010	rs680442	C	T	810.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.22;SB=0.00;SOR=6.184;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:839,63,0
1	77093011	rs587021	T	G	826.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=0.00;SOR=6.184;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:855,63,0
1	77093180	rs1184626	C	A	3218.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4669;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-1.922e+03;SOR=0.853;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3247,235,0
1	77094826	rs676269	A	G	826.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.16;SB=0.00;SOR=6.184;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:855,63,0
1	77627096	rs839825	G	A	1928.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.44;SB=-6.260e+02;SOR=1.919;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1957,147,0
1	77627450	rs17099983	T	C	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.721;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-1.028;SB=0.00;SOR=0.350;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,10:26:99:296,0,537
1	77629444	rs2293253	T	C	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.979;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-1.339;SB=-6.800e+01;SOR=0.556;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:31:99:359,0,555
1	77634948	rs1779199	G	A	1437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-4.290e+02;SOR=2.200;VQSLOD=4.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1466,108,0
1	77635175	rs150380534	TCTC	T	440.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.38;RPA=2,1;RU=CTC;ReadPosRankSum=-0.573;SB=0.00;SOR=1.112;STR;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:20:99:478,0,318
1	77752544	rs138257308	TAATTA	T	331.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;RPA=4,3;RU=AATTA;ReadPosRankSum=-1.120;SB=0.00;SOR=0.569;STR;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:369,0,461
1	77763071	rs1167207	A	G	1001.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-3.250e+02;SOR=2.093;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1030,81,0
1	77763542	rs1167206	G	A	1106.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-5.600e+02;SOR=1.270;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1135,84,0
1	77949123	rs7515509	G	A	938.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.686;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=4.790;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=-0.826;SB=-3.360e+02;SOR=0.216;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,36:58:99:967,0,652
1	77949129	rs7528932	A	T	820.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.294;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.422;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-0.455;SB=-2.290e+02;SOR=0.294;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,32:53:99:849,0,563
1	78001881	rs10873948	T	C	375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-8.297e+01;SOR=2.303;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:404,30,0
1	78024284	rs6675743	T	C	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.059;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.323;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-0.471;SB=-2.490e+02;SOR=0.446;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:419,0,529
1	78024345	rs71756472	C	CTAT	1000.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DB;DP=40;ExcessHet=3.0103;FS=6.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.66;RPA=1,2;RU=TAT;ReadPosRankSum=0.365;SB=-3.640e+02;SOR=1.138;STR;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,19:40:99:1038,0,958
1	78031994	rs7552291	A	G	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=0.061;SB=0.00;SOR=1.473;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:343,0,149
1	78033981	rs145860524	AAAATG	A	673.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;DB;DP=25;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.25;RPA=2,1;RU=AAATG;ReadPosRankSum=0.424;SB=-3.400e+02;SOR=0.141;STR;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:25:99:711,0,663
1	78045369	rs1565852	G	A	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.634;SB=-5.600e+01;SOR=1.022;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:429,0,450
1	78178976	rs6603958	T	A	1141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.809;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=5.612;HaplotypeScore=2.8793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=-0.388;SB=-4.140e+02;SOR=0.265;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,42:72:99:1170,0,847
1	78184325	rs12142671	A	G	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.298;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=0.761;SB=-2.140e+02;SOR=0.239;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:338,0,306
1	78200005	rs3767037	T	C	269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.511;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.933;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=1.416;SB=-1.235e+02;SOR=0.132;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:298,0,153
1	78201745	rs2296227	G	T	883.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.757;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=5.577;HaplotypeScore=2.5540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-1.252;SB=-5.050e+02;SOR=0.616;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,37:86:99:912,0,1393
1	78206682	rs2274123	A	C	418.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.877;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=2.176;SB=-8.297e+01;SOR=0.368;VQSLOD=8.57;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,13:18:99:447,0,138
1	78240117	rs2031342	T	C	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=0.303;SB=-1.090e+02;SOR=0.693;VQSLOD=10.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:217,0,127
1	78281002	rs11162386	T	C	616.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.822;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=1.823;SB=-1.225e+02;SOR=0.399;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,23:38:99:645,0,449
1	78314478	rs12409958	A	G	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.63;ReadPosRankSum=-0.142;SB=-5.900e+01;SOR=0.693;VQSLOD=9.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:121,0,330
1	78338678	rs190500587	C	T	1012.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-0.550;SB=-5.010e+02;SOR=0.616;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,43:80:99:1041,0,1021
1	78390046	.	C	CA	353.73	PASS	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.27;RPA=11,12;RU=A;SB=-1.761e+02;SOR=0.976;STR;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:391,42,0
1	78392446	rs1166698	G	A	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.091;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-1.734;SB=-2.801e+01;SOR=1.112;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:168,0,233
1	78399207	rs4483454	C	G	259.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.98;SB=-1.205e+02;SOR=1.609;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:288,21,0
1	78430689	.	A	AG	2579.73	PASS	AC=2;AF=1.00;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;RPA=1,2;RU=G;SB=-7.100e+02;SOR=2.041;STR;VQSLOD=5.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,59:60:99:2617,178,0
1	78478675	rs3790586	G	A	1187.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-2.001e+02;SOR=3.383;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1216,93,0
1	78481640	rs1039863	G	A	1161.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-2.291e+02;SOR=3.026;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1190,90,0
1	78560583	rs565164	G	A	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.588;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-1.657;SB=-3.200e+01;SOR=0.495;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:465,0,709
1	78578177	rs6666954	T	C	1169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.004;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=2.133;SB=-7.480e+02;SOR=0.489;VQSLOD=7.73;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:42,43:85:99:1198,0,1101
1	78585086	rs540742	T	C	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.316;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.94;ReadPosRankSum=0.796;SB=-1.370e+02;SOR=0.976;VQSLOD=7.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,13:37:99:322,0,615
1	78591740	rs139844601	TAAC	T	453.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.90;ReadPosRankSum=-0.741;SB=0.00;SOR=1.609;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:14:99:491,0,211
1	78601465	.	C	CT	806.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=1.609;POSITIVE_TRAIN_SITE;QD=9.96;RPA=8,9;RU=T;ReadPosRankSum=0.951;SB=-1.780e+02;SOR=0.582;STR;VQSLOD=1.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,36:93:99:844,0,975
1	79001994	rs3766332	A	T	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.285;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.658;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=-0.690;SB=-2.701e+01;SOR=2.737;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:615,0,320
1	79093818	rs273259	A	G	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=8.505;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.11;ReadPosRankSum=0.673;SB=-2.240e+02;SOR=0.556;VQSLOD=6.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,18:52:99:398,0,1101
1	79094081	rs1333973	T	A	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.28;ReadPosRankSum=-0.536;SB=-2.701e+01;SOR=0.169;VQSLOD=6.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:81:81,0,218
1	79094593	rs273257	A	G	1391.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-9.010e+02;SOR=0.909;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1420,102,0
1	79095339	rs273256	A	C	868.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-0.412;SB=-2.130e+02;SOR=0.752;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,30:51:99:897,0,562
1	79095581	rs987495	T	C	740.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.824;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.931;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-0.505;SB=-4.380e+02;SOR=0.551;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,28:68:99:769,0,1129
1	79101171	rs115901054	T	A	814.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=0.257;SB=-3.980e+02;SOR=0.604;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,36:83:99:843,0,1252
1	79106899	rs273252	T	C	628.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.100;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.165;SB=-2.770e+02;SOR=0.641;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:44:99:657,0,549
1	79128320	rs11577395	A	G	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.375;SB=0.00;SOR=0.593;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:233,0,298
1	79128570	rs67001034	G	GT	1505.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.47;ReadPosRankSum=0.587;SB=-5.130e+02;SOR=0.602;VQSLOD=7.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,37:68:99:1543,0,1232
1	79214855	rs74367391	A	G	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.657;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=-0.088;SB=-1.440e+02;SOR=1.609;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,13:19:99:370,0,158
1	79214864	rs2767494	G	C	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.582;SB=-1.520e+02;SOR=1.329;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:368,0,193
1	79214869	rs1629252	A	G	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.719;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=0.943;SB=-1.730e+02;SOR=1.179;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:375,0,165
1	79216267	rs1780743	G	C	430.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.34;SB=-3.010e+02;SOR=0.804;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:33:459,33,0
1	79355596	rs1061728	A	G	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.724;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=-1.284;SB=-6.100e+01;SOR=0.646;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:27:99:304,0,466
1	79356910	rs143948092	TA	T	353.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;RPA=7,6;RU=A;ReadPosRankSum=0.578;SB=-6.800e+01;SOR=0.941;STR;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:36:99:391,0,474
1	79357360	rs2275902	G	C	1074.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=1.153;SB=-5.880e+02;SOR=0.743;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,37:73:99:1103,0,927
1	79358743	.	C	CA	54.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.19;RPA=17,18;RU=A;ReadPosRankSum=-1.342;SB=-4.100e+01;SOR=0.327;STR;VQSLOD=8.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,8:28:92:92,0,256
1	79383300	rs5775467	CA	C	348.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;RPA=2,1;RU=A;ReadPosRankSum=-0.043;SB=-1.440e+02;SOR=0.678;STR;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,11:30:99:386,0,762
1	79383458	rs12569007	A	T	418.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.971;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-1.323;SB=-1.950e+02;SOR=0.892;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:447,0,516
1	79387242	rs3811440	C	T	1272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.230;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=6.546;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=0.629;SB=-3.640e+02;SOR=0.195;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,46:77:99:1301,0,915
1	79392756	rs12754818	C	A	635.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.193;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.176;SB=-2.620e+02;SOR=0.531;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,23:46:99:664,0,677
1	79392821	rs17412855	A	G	270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.492;SB=-3.500e+01;SOR=0.693;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:299,0,301
1	79401927	rs61770681	A	G	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.473;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=0.076;SB=-3.200e+01;SOR=1.659;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:352,0,271
1	79403751	rs985277	T	G	853.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.743;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.475;HaplotypeScore=1.6671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-1.411;SB=-3.790e+02;SOR=1.219;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,34:77:99:882,0,1182
1	79411888	rs723898	T	C	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-0.848;SB=-3.200e+01;SOR=0.350;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:345,0,557
1	79472141	rs1571992	C	A	588.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.76;SB=-2.750e+02;SOR=1.609;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:45:617,45,0
1	80961879	rs1966551	A	C	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=-0.295;SB=-8.297e+01;SOR=0.250;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:263,0,127
1	81892826	rs12121921	C	T	317.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.44;SB=-2.301e+02;SOR=0.836;VQSLOD=4.65;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:24:346,24,0
1	81892852	rs12140644	A	G	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=0.980;SB=-1.500e+02;SOR=0.495;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:54:234,0,54
1	81892857	rs12121928	C	G	205.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.000;SB=-1.480e+02;SOR=0.892;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:24:234,0,24
1	81967496	.	A	G	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.207;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQ0=0;MQRankSum=1.036;QD=6.06;ReadPosRankSum=0.798;SB=-9.400e+01;SOR=0.446;VQSLOD=1.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,8:30:99:210,0,660
1	81967508	rs114868480	A	G	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.727;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=-0.883;POSITIVE_TRAIN_SITE;QD=7.14;ReadPosRankSum=-0.321;SB=-9.400e+01;SOR=0.582;VQSLOD=2.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,10:34:99:271,0,710
1	81967962	rs1044343	T	C	1188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.630;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.105;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-2.136;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=-0.238;SB=-7.120e+02;SOR=0.877;VQSLOD=0.540;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,47:62:99:1217,0,323
1	81967987	rs1324376	T	C	1222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.866;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-2.019;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=2.522;SB=-6.800e+02;SOR=0.809;VQSLOD=2.42;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,47:66:99:1251,0,409
1	81969284	rs1108500	G	T	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=0.059;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-1.041;SB=0.00;SOR=0.593;VQSLOD=3.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:264,0,315
1	82415814	rs9438715	T	C	737.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-1.453e+02;SOR=2.737;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:766,57,0
1	82416220	rs2148630	G	A	500.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-7.797e+01;SOR=3.126;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:529,39,0
1	82417552	rs7413275	T	G	905.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=-8.197e+01;SOR=4.091;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:934,69,0
1	82421596	rs11163397	C	T	2220.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-1.097e+03;SOR=1.195;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2249,163,0
1	82436281	rs1327022	G	A	446.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.25;SB=0.00;SOR=5.136;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:475,36,0
1	82445480	rs2296698	G	A	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=0.779;SB=-3.677e+01;SOR=1.061;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,11:14:69:359,0,69
1	82450194	rs1154816	C	A	671.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=5.610;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.816;SB=-2.070e+02;SOR=0.165;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,25:54:99:700,0,913
1	82450725	rs1409764	G	A	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.979;SB=0.00;SOR=0.836;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:232,0,197
1	82450758	rs3790872	C	T	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=1.216;SB=0.00;SOR=0.527;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:311,0,369
1	82450814	rs76729407	C	A	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.577;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.703;SB=-1.670e+02;SOR=0.986;VQSLOD=8.02;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,24:47:99:615,0,639
1	82450844	rs1409765	C	G	653.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.384;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.059;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.434;SB=-3.520e+02;SOR=0.478;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,27:59:99:682,0,885
1	84640691	rs582201	T	G	558.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.61;SB=-3.660e+02;SOR=0.990;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:42:587,42,0
1	84700766	rs11163923	C	T	382.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.80;SB=-3.976e+01;SOR=3.442;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:411,30,0
1	84701251	rs600674	T	C	880.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.58;SB=-8.197e+01;SOR=4.003;VQSLOD=5.05;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,23:23:66:909,66,0
1	84765340	rs72030782	G	GTATA	842.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;RPA=9,11;RU=TA;SB=-1.725e+02;SOR=2.448;STR;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:20:45:880,45,0
1	84791239	rs315555	T	C	559.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-1.115e+02;SOR=2.712;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:42:588,42,0
1	84810396	rs315528	A	C	662.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=-1.245e+02;SOR=2.948;VQSLOD=5.06;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,19:19:51:691,51,0
1	84810815	rs315527	A	G	1923.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=-1.087e+03;SOR=0.917;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1952,144,0
1	84853957	rs665074	A	T	1078.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-3.960e+02;SOR=1.949;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1107,81,0
1	84854097	rs142654778	T	C	749.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-0.152;SB=-4.690e+02;SOR=0.708;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,33:78:99:778,0,1161
1	84864256	rs3738573	G	C	725.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.204;HaplotypeScore=1.6229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=0.616;SB=-4.520e+02;SOR=0.704;VQSLOD=8.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,33:72:99:754,0,1007
1	84867563	rs41293023	C	T	96.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.44;ReadPosRankSum=0.669;SB=-5.150e-01;SOR=2.215;VQSLOD=6.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:125,0,228
1	84867569	rs41293025	C	G	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.001;SB=-9.732e-01;SOR=2.546;VQSLOD=6.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:99:168,0,221
1	84867806	rs41293027	T	C	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.839;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.199;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.36;ReadPosRankSum=0.042;SB=-6.900e+01;SOR=0.260;VQSLOD=6.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:168,0,352
1	84876501	rs41298531	G	A	985.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.468;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=1.992;HaplotypeScore=4.4667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.135;SB=-5.170e+02;SOR=0.446;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,41:79:99:1014,0,1052
1	84944989	rs2292191	A	G	1269.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.41;SB=-7.110e+02;SOR=0.798;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1298,99,0
1	84946745	rs7413066	C	T	815.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-2.471e+02;SOR=2.215;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:844,63,0
1	84986213	rs5775789	AT	A	522.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.89;RPA=10,9;RU=T;SB=-2.877e+01;SOR=4.712;STR;VQSLOD=3.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:560,63,0
1	85020795	rs147594119	G	A	922.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.898;HaplotypeScore=1.9465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.64;ReadPosRankSum=-1.563;SB=-5.200e+02;SOR=0.972;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,38:73:99:951,0,1005
1	85096589	rs12125951	T	G	1461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.337;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=4.504;HaplotypeScore=3.3614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.02;ReadPosRankSum=0.413;SB=-3.880e+02;SOR=0.265;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,48:73:99:1490,0,715
1	85096592	rs11164027	C	T	601.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.652;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.320;HaplotypeScore=2.6274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=-0.480;SB=-7.300e+01;SOR=1.103;VQSLOD=7.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,23:68:99:630,0,1459
1	85096920	rs6695249	A	G	558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.301;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.320;SB=-1.520e+02;SOR=0.638;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,21:35:99:587,0,401
1	85097247	rs12031476	T	G	1056.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.285;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.104;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=0.012;SB=-3.120e+02;SOR=0.534;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,38:68:99:1085,0,846
1	85113203	.	T	C	615.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.361;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.400;SB=-2.730e+02;SOR=1.136;VQSLOD=6.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,26:70:99:644,0,1181
1	85113229	rs1057746	A	G	685.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=4.670;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=-1.165;SB=-4.170e+02;SOR=0.824;VQSLOD=7.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,30:71:99:714,0,1118
1	85121255	rs4537578	A	G	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=1.130;SB=-2.400e+02;SOR=0.693;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,18:41:99:453,0,612
1	85128262	rs2911563	A	G	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.529;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=1.506;SB=-1.760e+02;SOR=0.602;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,26:67:99:690,0,1204
1	85128280	rs2994437	T	C	541.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.703;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.358;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=2.782;SB=-8.900e+01;SOR=0.996;VQSLOD=7.03;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:38,20:58:99:570,0,1065
1	85128305	rs11164033	G	C	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.123;SB=-6.500e+01;SOR=0.941;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,19:46:99:580,0,814
1	85131982	rs3096445	T	G	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=2.881;SB=-1.765e+00;SOR=1.911;VQSLOD=8.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:173,0,122
1	85279394	rs41289033	T	A	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.11;ReadPosRankSum=-0.135;SB=-1.765e+00;SOR=0.321;VQSLOD=9.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,3:16:78:78,0,391
1	85331808	rs67410957	G	GAGA	766.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;DB;DP=35;ExcessHet=3.0103;FS=3.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.55;RPA=1,2;RU=AGA;ReadPosRankSum=-1.631;SB=-2.850e+02;SOR=0.171;STR;VQSLOD=6.45;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,15:35:99:804,0,995
1	85397286	rs34793286	G	C	455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-0.813;SB=-1.010e+02;SOR=0.853;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:484,0,496
1	85417779	rs679961	G	A	364.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=0.00;SOR=4.804;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:393,30,0
1	85418307	rs677476	C	G	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.912;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=14.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=1.051;SB=-1.880e+02;SOR=0.030;VQSLOD=5.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,17:42:99:495,0,761
1	85422061	rs632545	C	T	1715.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.065;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.652;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=1.052;SB=-8.420e+02;SOR=0.600;VQSLOD=7.53;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,63:135:99:1744,0,2072
1	85462582	rs11161503	C	G	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.427;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.022;SB=-9.300e+01;SOR=1.402;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:416,0,436
1	85462652	rs11161504	G	T	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.069;SB=-3.500e+01;SOR=0.551;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:193,0,210
1	85462665	rs11161505	T	G	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.303;SB=-3.101e+01;SOR=0.368;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:130,0,178
1	85488030	rs2028304	G	A	849.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.019;HaplotypeScore=2.3893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.821;SB=-5.610e+02;SOR=0.514;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,34:59:99:878,0,590
1	85488154	rs2039814	G	C	588.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.04;SB=0.00;SOR=5.670;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:617,45,0
1	85537502	rs4907131	T	A	404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=0.00;SOR=4.977;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:433,33,0
1	85537522	rs4907132	T	C	485.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-3.876e+01;SOR=3.767;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:514,39,0
1	85538655	rs35956778	A	AG	410.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;DB;DP=24;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=0.970;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=-1.026;SB=-1.050e+02;SOR=0.307;VQSLOD=0.060;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,14:24:99:448,0,209
1	85538947	rs4907133	A	G	452.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.753;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=-0.049;SB=0.00;SOR=1.863;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,13:18:99:481,0,146
1	85547270	rs10782539	A	G	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.059;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=-0.762;SB=-5.150e-01;SOR=2.124;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:580,0,451
1	85547945	rs7534574	T	C	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=1.735;SB=-3.501e+01;SOR=1.329;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:355,0,160
1	85550156	rs57826280	A	AAT	271.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;RPA=8,9;RU=AT;ReadPosRankSum=0.822;SB=-8.400e+01;SOR=0.293;STR;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:309,0,247
1	85555672	rs1417351	A	C	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.812;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.833;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.80;ReadPosRankSum=1.493;SB=-5.800e+01;SOR=1.230;VQSLOD=6.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:171,0,337
1	85559118	rs11304107	CT	C	597.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQ0=0;MQRankSum=1.124;POSITIVE_TRAIN_SITE;QD=14.58;RPA=7,6;RU=T;ReadPosRankSum=0.650;SB=-7.100e+01;SOR=0.976;STR;VQSLOD=3.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,26:41:99:635,0,360
1	85559452	rs709762	A	G	548.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.600;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-0.662;SB=-1.610e+02;SOR=1.222;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,20:49:99:577,0,748
1	85561546	rs709766	T	C	684.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.524;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.166;SB=-1.780e+02;SOR=0.972;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,24:40:99:713,0,432
1	85561872	rs817596	C	T	366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.70;SB=0.00;SOR=4.804;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:395,30,0
1	85564138	rs817489	A	G	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.044;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.789;SB=-4.176e+01;SOR=0.223;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:237,0,233
1	85573705	rs67279104	A	AC	707.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;DB;DP=37;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=1.429;SB=-8.100e+01;SOR=1.420;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:745,0,586
1	85589939	rs11356964	GT	G	947.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;DB;DP=67;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;RPA=2,1;RU=T;ReadPosRankSum=-1.438;SB=-2.870e+02;SOR=1.162;STR;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,27:67:99:985,0,1544
1	85592126	rs817474	G	T	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.91;ReadPosRankSum=1.615;SB=-3.000e+01;SOR=0.446;VQSLOD=9.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:92:92,0,300
1	85595645	rs1020770	C	T	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.020;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.265;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=-0.596;SB=-3.280e+02;SOR=0.996;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,25:46:99:634,0,622
1	85598527	rs5775826	TC	T	1403.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;RPA=8,7;RU=C;SB=-1.413e+02;SOR=4.125;STR;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1441,126,0
1	85624549	rs709786	C	T	3095.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-1.521e+03;SOR=1.234;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3124,229,0
1	85624864	rs817412	G	A	1385.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-6.680e+02;SOR=1.154;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1414,105,0
1	85647713	rs817444	T	C	997.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-2.800e+02;SOR=2.066;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:1026,75,0
1	85648620	rs817443	C	T	1902.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-1.076e+03;SOR=0.836;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1931,141,0
1	85648905	rs11161539	T	C	979.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-2.790e+02;SOR=2.448;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:1008,72,0
1	85723318	rs17382844	A	G	414.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.639;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.457;SB=-6.400e+01;SOR=0.231;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:443,0,555
1	85741734	rs12068788	A	T	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.473;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-0.071;SB=-1.290e+02;SOR=0.435;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:307,0,464
1	85741921	rs2735594	G	C	764.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-2.790e+02;SOR=1.519;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:793,57,0
1	85741968	rs12562182	G	C	38.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=8.674;HaplotypeScore=2.6548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.42;ReadPosRankSum=-0.875;SB=-5.455e+00;SOR=0.838;VQSLOD=5.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,3:16:67:67,0,477
1	85787114	rs233116	A	T	980.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-2.211e+02;SOR=2.621;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:31:72:1009,72,0
1	85787118	rs3087894	G	C	496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.105;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=1.427;SB=-1.270e+02;SOR=0.693;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:525,0,341
1	85787323	rs1498375	T	A	495.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.105;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.220;SB=-1.205e+02;SOR=0.078;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,18:31:99:524,0,423
1	85787334	rs1498374	C	T	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.598;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=0.709;SB=-4.176e+01;SOR=0.287;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:457,0,414
1	85790633	rs1498373	G	A	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.218;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.959;HaplotypeScore=1.7338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=0.543;SB=-1.905e+01;SOR=1.863;VQSLOD=7.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,20:55:99:541,0,1087
1	85816134	rs2230820	T	C	645.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=0.826;SB=-2.990e+02;SOR=1.061;VQSLOD=7.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,28:72:99:674,0,1127
1	85817295	rs2076699	G	A	1873.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.636;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=2.021;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=0.104;SB=-8.180e+02;SOR=0.895;VQSLOD=7.25;culprit=DP	GT:AD:DP:GQ:PL	0/1:91,72:163:99:1902,0,2412
1	85930272	rs4001153	GAC	G	813.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;RPA=11,10;RU=AC;SB=-3.130e+02;SOR=1.329;STR;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:27:66:851,66,0
1	86146672	rs3767162	G	A	699.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=-0.076;SB=-9.100e+01;SOR=1.473;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,24:42:99:728,0,434
1	86167957	rs1764298	C	T	624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.648;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.822;SB=-3.780e+02;SOR=0.675;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,23:38:99:653,0,340
1	86171692	rs370671489	TA	T	138.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.61;RPA=13,12;RU=A;ReadPosRankSum=-0.349;SB=-2.777e+01;SOR=1.179;STR;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:22:176,0,22
1	86202016	rs1481200	C	T	1438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.328;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=2.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-1.540;SB=-7.350e+02;SOR=1.008;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,57:120:99:1467,0,1709
1	86210241	.	G	GT	99.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQ0=0;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=9.97;RPA=4,5;RU=T;ReadPosRankSum=-1.113;SB=0.00;SOR=0.693;STR;VQSLOD=3.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:137,0,129
1	86210546	rs7547023	G	A	471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.491;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=1.843;SB=-2.801e+01;SOR=2.247;VQSLOD=6.79;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,16:29:99:500,0,341
1	86211325	rs10747324	G	A	450.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.492;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=-0.766;SB=-1.080e+02;SOR=0.473;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,16:25:99:479,0,246
1	86246849	rs313722	A	C	773.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.110;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.376;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=-0.996;SB=-2.400e+02;SOR=1.121;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,29:45:99:802,0,390
1	86249063	rs313724	C	T	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.797;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.000;SB=-1.340e+02;SOR=0.128;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:371,0,406
1	86249911	rs313725	A	G	1081.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.317;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=3.973;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.149;SB=-4.490e+02;SOR=1.128;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,41:94:99:1110,0,1422
1	86361384	rs4912449	C	T	171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-0.308;SB=-6.800e+01;SOR=0.693;VQSLOD=9.91;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:200,0,180
1	86361802	rs7541806	C	G	405.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.261;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.812;SB=-2.560e+02;SOR=0.284;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:434,0,459
1	86372839	.	T	TG	709.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;RPA=7,8;RU=G;ReadPosRankSum=1.860;SB=-2.220e+02;SOR=0.593;STR;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,24:43:99:747,0,501
1	86375654	rs1502657	C	G	847.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.897;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-0.177;SB=-4.540e+02;SOR=0.892;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,35:73:99:876,0,988
1	86377028	rs10493777	C	T	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.888;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-1.016;SB=-6.800e+01;SOR=0.602;VQSLOD=10.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:344,0,349
1	86453409	rs589698	C	T	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=-0.653;SB=-1.120e+02;SOR=0.446;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,17:27:99:521,0,327
1	86482728	rs113284571	T	C	67.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.78;ReadPosRankSum=-1.687;SB=-1.765e+00;SOR=0.836;VQSLOD=8.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:96:96,0,218
1	86487981	rs516213	G	A	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.807;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.441;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-0.295;SB=-1.700e+02;SOR=1.051;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:495,0,392
1	86487992	rs35501628	A	AACAG	873.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;DB;DP=30;ExcessHet=3.0103;FS=4.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.27;RPA=1,2;RU=ACAG;ReadPosRankSum=-0.340;SB=-5.900e+01;SOR=2.012;STR;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:30:99:911,0,803
1	86554813	.	G	GA	260.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;DP=33;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.90;RPA=7,8;RU=A;ReadPosRankSum=-0.163;SB=-9.900e+01;SOR=0.307;STR;VQSLOD=7.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,15:33:99:298,0,381
1	86554821	rs12405791	G	A	537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.7167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.922;SB=-1.310e+02;SOR=0.576;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:566,0,544
1	86557967	rs11161732	G	A	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.169;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=0.091;SB=-2.380e+02;SOR=0.236;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:503,0,598
1	86590915	rs2174767	G	A	2822.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-1.662e+03;SOR=0.832;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2851,214,0
1	86591837	rs11161747	G	A	2651.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-1.415e+03;SOR=1.116;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2680,199,0
1	86621992	rs1999747	C	A	1333.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-4.950e+02;SOR=1.666;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1362,102,0
1	86807618	rs272489	C	T	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=4.467;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-1.200;SB=-1.330e+02;SOR=0.525;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:247,0,168
1	86818572	rs272496	T	C	33.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.60;ReadPosRankSum=-1.016;SB=-1.709e+01;SOR=1.179;VQSLOD=8.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:62:62,0,234
1	86820267	rs1182098	C	T	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.163;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-0.717;SB=-3.340e+02;SOR=0.646;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,26:65:99:684,0,1134
1	86838158	rs421105	C	T	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.843;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.301;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=-1.304;SB=-1.300e+02;SOR=0.132;VQSLOD=7.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,9:28:99:215,0,552
1	86852621	rs2390096	A	G	1341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.573;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=8.100;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.177;SB=-3.890e+02;SOR=1.444;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,49:110:99:1370,0,1700
1	86891005	rs1158506	C	A	547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.20;SB=0.00;SOR=5.549;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:576,45,0
1	86891179	rs2210641	T	C	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.093;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=12.381;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=0.248;SB=-5.150e-01;SOR=4.174;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:402,0,198
1	86894371	rs1334147	G	T	1727.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-5.310e+02;SOR=2.004;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1756,132,0
1	86894496	rs2151709	T	C	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=0.00;SOR=4.977;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:394,30,0
1	86896541	rs3737672	G	A	1143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.029;SB=-6.980e+02;SOR=0.695;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,45:88:99:1172,0,1018
1	86896706	rs3737673	C	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.747;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=11.083;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=0.000;SB=-1.135e+02;SOR=0.023;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:235,0,436
1	86897970	rs12407985	T	A	255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.58;ReadPosRankSum=0.140;SB=0.00;SOR=2.303;VQSLOD=8.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:47:284,0,47
1	86897973	rs1334150	T	C	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.81;SB=0.00;SOR=4.804;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
1	86898315	rs3737159	T	C	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.768;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=0.163;SB=-3.100e+01;SOR=1.179;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:388,0,417
1	86900332	rs17449526	T	C	2161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=2.662;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=0.374;SB=-1.334e+03;SOR=0.898;VQSLOD=6.70;culprit=DP	GT:AD:DP:GQ:PL	0/1:85,87:172:99:2190,0,2381
1	86900372	rs17409304	C	G	2249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.098;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=1.275;HaplotypeScore=4.1947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=2.376;SB=-1.191e+03;SOR=0.561;VQSLOD=6.64;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,80:157:99:2278,0,2098
1	86900491	rs56408800	C	T	685.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.499;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=7.225;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.180;SB=-1.730e+02;SOR=0.082;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:714,0,809
1	86904993	rs11161831	T	A	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.172;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.516;SB=-4.176e+01;SOR=0.223;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:266,0,260
1	86909685	rs72720136	A	G	429.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.117;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.483;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=1.629;SB=-2.657e-01;SOR=2.303;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,14:42:99:458,0,865
1	86909703	rs3820039	T	C	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.789;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=0.527;SB=-1.765e+00;SOR=0.990;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,12:32:99:336,0,671
1	86913265	rs2275001	C	T	1258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.813;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.060;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=0.496;SB=-6.010e+02;SOR=0.430;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,46:81:99:1287,0,962
1	86920904	rs2390057	A	G	1239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.450;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.914;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.849;SB=-6.800e+02;SOR=0.446;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,44:84:99:1268,0,1086
1	86939130	rs2145412	C	T	2556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-1.196e+03;SOR=1.165;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2585,196,0
1	86939390	rs2180762	G	A	2183.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-9.470e+02;SOR=1.478;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2212,163,0
1	86947975	rs1321694	A	T	468.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.264;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-0.885;SB=-2.220e+02;SOR=1.042;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,19:39:99:497,0,482
1	86952324	rs2734705	A	G	2263.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-1.334e+03;SOR=0.781;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2292,166,0
1	86954591	rs2075632	T	C	506.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.980;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.497;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.891;SB=-2.220e+02;SOR=0.200;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:535,0,515
1	86959173	rs2791494	T	C	1668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-5.180e+02;SOR=2.093;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1697,123,0
1	86959796	rs1321689	C	T	806.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-1.205e+02;SOR=3.258;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:835,63,0
1	86965419	rs1882753	T	C	775.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.527;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.152;SB=-2.330e+02;SOR=0.730;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,28:65:99:804,0,1021
1	87018768	rs6676936	A	G	1104.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-4.100e+02;SOR=1.885;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1133,87,0
1	87033206	.	A	G	2061.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=10.299;DP=159;Dels=0.00;ExcessHet=3.0103;FS=2.777;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.97;ReadPosRankSum=2.423;SB=-1.153e+03;SOR=0.855;VQSLOD=4.99;culprit=DP	GT:AD:DP:GQ:PL	0/1:84,75:159:99:2090,0,2252
1	87036746	rs772599	C	A	3450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-1.656e+03;SOR=1.417;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3479,256,0
1	87045896	rs4001061	TCCTACA	T	4935.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-2.431e+03;SOR=0.693;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:68:99:4973,185,0
1	87368917	rs573680	A	G	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-0.742;SB=-1.750e+02;SOR=0.859;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,18:31:99:474,0,317
1	87369176	rs571015	C	T	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=-1.145;SB=-4.176e+01;SOR=0.275;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:311,0,236
1	87379986	rs754001	T	C	67.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.78;ReadPosRankSum=-0.608;SB=-3.101e+01;SOR=0.368;VQSLOD=9.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:96:96,0,172
1	87380929	rs114120960	C	T	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.566;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.23;ReadPosRankSum=-0.909;SB=-1.352e-01;SOR=2.303;VQSLOD=5.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,5:21:99:138,0,455
1	87458695	rs10873810	G	A	844.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.016;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-1.326;SB=-3.520e+02;SOR=0.534;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,30:64:99:873,0,937
1	87511177	rs4656138	C	T	1402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.303;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.330;SB=-9.070e+02;SOR=0.733;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,57:119:99:1431,0,1632
1	87511398	rs7534656	C	T	496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-2.381e+02;SOR=0.941;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:525,39,0
1	87538200	rs10782592	G	A	1470.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=-8.340e+02;SOR=1.094;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1499,108,0
1	87538962	rs1539610	G	A	360.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.03;SB=0.00;SOR=4.804;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:389,30,0
1	87549858	rs2798675	A	G	860.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-3.620e+02;SOR=1.609;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:889,63,0
1	87558066	rs66709085	CCACATA	C	806.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;RPA=2,1;RU=CACATA;SB=0.00;SOR=4.804;STR;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:844,30,0
1	87563388	rs113186720	A	T	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.197;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=-1.318;SB=-1.080e+02;SOR=0.269;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:342,0,297
1	87563668	rs1199677	G	A	1519.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-3.690e+02;SOR=2.560;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1548,114,0
1	87570398	rs1621247	G	A	598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.433;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-0.598;SB=-1.210e+02;SOR=0.722;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,21:55:99:627,0,1052
1	87598117	rs6686259	T	G	690.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;SB=-1.851e+02;SOR=1.981;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:719,54,0
1	87599697	rs6576865	G	A	2150.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.30;SB=-1.231e+03;SOR=1.121;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2179,160,0
1	87633761	rs10782593	C	T	1403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-5.190e+02;SOR=1.981;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1432,105,0
1	87633929	rs17129860	A	G	1027.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.187;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.277;HaplotypeScore=1.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.174;SB=-4.810e+02;SOR=1.206;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,40:71:99:1056,0,852
1	87709437	rs28379534	G	C	506.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=1.591;SB=-1.760e+02;SOR=0.655;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:535,0,456
1	89225976	rs430600	T	C	1174.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-7.310e+02;SOR=0.746;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1203,87,0
1	89236029	rs7541301	T	A	1155.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-3.150e+02;SOR=2.432;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1184,90,0
1	89250152	rs1772795	G	A	358.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.79;SB=0.00;SOR=4.804;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:387,30,0
1	89252013	.	A	AT	189.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.99;RPA=10,11;RU=T;ReadPosRankSum=0.409;SB=0.00;SOR=0.793;STR;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:22:99:227,0,152
1	89271574	rs786906	T	C	1427.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-6.150e+02;SOR=1.230;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1456,108,0
1	89280965	rs786918	A	G	789.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.23;SB=-3.970e+02;SOR=1.460;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:57:818,57,0
1	89322982	rs2794318	G	A	3700.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-2.151e+03;SOR=0.892;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3729,271,0
1	89357054	rs190065426	C	G	467.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-1.560;SB=0.00;SOR=0.343;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,15:39:99:496,0,866
1	89426902	rs3738055	G	A	693.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.923;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=0.091;SB=-2.510e+02;SOR=0.551;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,25:63:99:722,0,1084
1	89427252	rs10922530	G	A	258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=2.362;SB=0.00;SOR=1.802;VQSLOD=9.34;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:89:287,0,89
1	89427571	rs3753683	G	C	256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=0.855;SB=0.00;SOR=1.179;VQSLOD=10.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:285,0,162
1	89430420	rs1536259	A	G	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=-1.268;SB=-9.700e+01;SOR=0.446;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:339,0,296
1	89449298	rs111779380	C	G	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.93;MQ0=0;MQRankSum=-4.695;QD=5.60;ReadPosRankSum=0.155;SB=-6.000e+01;SOR=1.222;VQSLOD=0.232;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,11:36:99:230,0,711
1	89449483	rs74100106	C	G	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.649;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2019;MLEAC=1;MLEAF=0.500;MQ=55.96;MQ0=0;MQRankSum=-3.971;QD=5.03;ReadPosRankSum=-0.165;SB=-5.300e+01;SOR=0.693;VQSLOD=0.871;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,9:29:99:174,0,676
1	89478854	rs4656076	C	G	619.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=0.00;SOR=5.670;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:648,48,0
1	89479063	rs4656077	G	A	1770.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-6.300e+02;SOR=1.835;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1799,129,0
1	89479074	rs4656078	C	T	1673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-6.160e+02;SOR=1.791;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1702,126,0
1	89479758	rs3795543	T	C	1974.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-8.350e+02;SOR=1.609;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2003,147,0
1	89486037	rs7555039	C	T	2528.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-5.200e+02;SOR=2.899;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2557,187,0
1	89520329	rs72054220	GAAAAAC	G	1157.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.21;SB=0.00;SOR=5.549;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:1195,45,0
1	89520574	rs10922554	C	A	2011.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-8.660e+02;SOR=1.609;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2040,147,0
1	89520636	rs10922555	G	A	870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-2.800e+02;SOR=2.226;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:66:899,66,0
1	89520643	rs10922556	C	T	832.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-2.560e+02;SOR=2.147;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:861,63,0
1	89522512	rs4376712	C	T	1680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-5.530e+02;SOR=2.004;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1709,123,0
1	89522646	rs1048425	G	C	3122.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-1.562e+03;SOR=0.972;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3151,229,0
1	89525219	rs34279176	CT	C	217.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=1.211;QD=7.26;RPA=18,17;RU=T;ReadPosRankSum=0.523;SB=-5.900e+01;SOR=0.631;STR;VQSLOD=1.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,17:38:99:255,0,244
1	89574026	rs1329119	G	A	829.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-1.991e+02;SOR=2.584;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:858,63,0
1	89579941	rs2230338	T	C	2555.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-1.417e+03;SOR=0.793;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2584,196,0
1	89582690	rs1803632	G	C	2493.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-1.107e+03;SOR=1.463;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:78:99:2522,181,0
1	89583544	rs2209956	T	C	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.39;SB=0.00;SOR=4.804;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
1	89607479	rs6666846	G	T	826.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.51;SB=-3.040e+02;SOR=1.688;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:63:855,63,0
1	89607486	rs6658235	T	C	816.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-2.710e+02;SOR=1.781;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:845,60,0
1	89615979	rs586609	C	T	584.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.65;SB=0.00;SOR=5.549;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:613,45,0
1	89618472	rs10710842	GA	G	605.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DB;DP=45;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=61.19;MQ0=0;MQRankSum=1.100;POSITIVE_TRAIN_SITE;QD=14.77;RPA=16,15;RU=A;ReadPosRankSum=-0.399;SB=-3.060e+02;SOR=0.636;STR;VQSLOD=0.041;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,34:45:56:643,0,56
1	89637578	rs676913	G	A	5812.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=196;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-3.636e+03;SOR=0.724;VQSLOD=3.68;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,195:196:99:5841,424,0
1	89650850	rs623134	A	T	701.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.94;SB=0.00;SOR=5.892;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:730,54,0
1	89652071	.	T	C	411.77	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=1;QD=29.41;SB=-1.653e+02;SOR=1.609;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:440,33,0
1	89652072	.	C	T	422.77	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=1;QD=30.20;SB=-1.573e+02;SOR=1.609;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:451,33,0
1	89652078	rs608339	A	T	414.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=1;POSITIVE_TRAIN_SITE;QD=29.63;SB=-1.573e+02;SOR=1.609;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:443,33,0
1	89652087	rs1142890	C	T	296.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=1;POSITIVE_TRAIN_SITE;QD=26.98;SB=-1.205e+02;SOR=1.609;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:325,24,0
1	89652088	rs1142889	C	G	298.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=1;POSITIVE_TRAIN_SITE;QD=27.16;SB=-1.245e+02;SOR=1.609;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:327,24,0
1	89652090	rs1142888	T	G	303.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=1;POSITIVE_TRAIN_SITE;QD=27.62;SB=-1.225e+02;SOR=1.609;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:332,24,0
1	89652094	rs1142887	G	A	288.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=1;QD=26.25;SB=-1.245e+02;SOR=1.609;VQSLOD=3.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:317,24,0
1	89652097	rs1142886	C	T	299.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=1;POSITIVE_TRAIN_SITE;QD=27.25;SB=-1.165e+02;SOR=1.609;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:328,24,0
1	89652102	rs655260	A	T	296.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=1;POSITIVE_TRAIN_SITE;QD=26.98;SB=-1.205e+02;SOR=1.609;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:325,24,0
1	89661228	rs650448	T	G	2125.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-9.060e+02;SOR=1.609;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2154,154,0
1	89664276	rs493470	T	C	505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-4.276e+01;SOR=3.912;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:534,39,0
1	89726592	rs535351	G	A	1714.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-3.377e+01;SOR=6.229;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1743,132,0
1	89730723	rs9628688	C	T	1260.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-1.603e+02;SOR=2.891;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1289,96,0
1	89731959	rs12729209	G	A	755.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-1.563e+02;SOR=2.833;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:60:784,60,0
1	89733273	rs6690597	T	C	1829.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-3.540e+02;SOR=2.970;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1858,135,0
1	89734984	.	C	T	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.693;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.52;ReadPosRankSum=0.000;SB=0.00;SOR=1.061;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:343,0,231
1	89755671	rs623771	T	A	196.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.000;SB=-6.897e+01;SOR=0.582;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:56:225,0,56
1	89833933	rs9428023	C	T	510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=0.00;SOR=5.421;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:539,42,0
1	89835401	rs77072440	G	A	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.376;SB=0.00;SOR=0.473;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:198,0,282
1	89845926	rs67367078	GT	G	1009.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.57;RPA=9,8;RU=T;SB=-1.940e+02;SOR=2.833;STR;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1047,114,0
1	89847153	rs1001847	G	A	1138.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=-4.960e+02;SOR=1.609;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:87:1167,87,0
1	89847372	rs4658359	G	T	2545.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-1.316e+03;SOR=0.968;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2574,193,0
1	89847411	rs4658360	C	T	2441.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-1.394e+03;SOR=0.791;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2470,187,0
1	89847444	rs4658146	A	G	2462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-1.313e+03;SOR=0.828;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2491,187,0
1	89849201	rs928652	C	G	3155.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-1.351e+03;SOR=1.538;VQSLOD=3.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3184,229,0
1	89849350	rs928653	G	A	2739.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=-1.063e+03;SOR=1.522;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2768,208,0
1	89849441	rs928654	T	G	1974.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-9.390e+02;SOR=1.160;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2003,144,0
1	89849574	rs928655	G	A	1333.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-7.400e+02;SOR=0.793;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1362,102,0
1	89849742	rs959460	A	T	656.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-1.055e+02;SOR=3.056;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:685,51,0
1	89875791	rs4233427	T	C	2060.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-4.176e+01;SOR=5.784;VQSLOD=4.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2089,157,0
1	89876132	rs4258205	T	C	1899.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-4.470e+02;SOR=2.753;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1928,153,0
1	89885854	rs6673154	G	A	739.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-3.100e+02;SOR=1.519;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:768,57,0
1	89886714	rs6428538	A	G	2758.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-1.424e+03;SOR=1.065;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2787,202,0
1	89886796	rs6428539	G	A	2352.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-1.015e+03;SOR=1.493;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2381,175,0
1	89887468	rs67428662	TG	T	439.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=0.00;SOR=5.421;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:41:477,41,0
1	89888530	rs4261099	C	T	1700.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-5.500e+02;SOR=2.179;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1729,126,0
1	89888552	rs4282800	T	A	2019.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-8.400e+02;SOR=1.644;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2048,150,0
1	89888585	rs4415545	C	G	2311.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=27.85;SB=-1.305e+03;SOR=1.048;VQSLOD=4.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,83:84:99:2340,169,0
1	89888588	rs4506445	G	T	2285.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.990;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.636;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=1.399;SB=-1.310e+03;SOR=0.793;VQSLOD=2.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,82:83:99:2314,169,0
1	90048132	rs2279085	T	C	3237.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-1.736e+03;SOR=0.916;VQSLOD=4.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3266,244,0
1	90049040	rs36084789	A	G	1676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-8.510e+02;SOR=1.159;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1705,129,0
1	90058242	.	G	GT	685.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.143;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.17;RPA=13,14;RU=T;ReadPosRankSum=0.729;SB=-1.311e+02;SOR=0.818;STR;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:3,31:35:25:723,25,0
1	90171835	rs6657969	C	T	1221.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-3.590e+02;SOR=2.362;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1250,93,0
1	90178743	rs474536	A	G	2444.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-1.240e+03;SOR=1.136;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2473,181,0
1	90459744	rs2703984	A	G	1269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.174;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=3.217;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-1.215;SB=-3.310e+02;SOR=1.111;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,47:92:99:1298,0,1278
1	90459982	rs7556257	G	A	337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.997;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=-0.463;SB=0.00;SOR=1.127;VQSLOD=10.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:366,0,266
1	90470915	rs11808927	T	A	539.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.305;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=1.009;SB=0.00;SOR=0.906;VQSLOD=10.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:568,0,394
1	90475877	rs12140948	G	A	555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.890;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.570;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.16;ReadPosRankSum=-0.488;SB=-3.100e+01;SOR=1.852;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:584,0,331
1	90486412	rs2816881	T	G	1724.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.653;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-0.072;SB=-1.039e+03;SOR=0.682;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,66:128:99:1753,0,1592
1	90493026	rs10922744	G	A	652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.321;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-0.893;SB=-2.670e+02;SOR=0.986;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,22:36:99:681,0,401
1	91447985	rs358691	C	T	1134.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-4.520e+02;SOR=1.802;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1163,87,0
1	91728053	rs585898	G	A	1441.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-7.900e+02;SOR=0.963;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1470,105,0
1	91728202	rs555432	T	C	412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=0.00;SOR=4.977;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:441,33,0
1	91739208	rs281964	C	T	709.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.39;SB=-2.740e+02;SOR=1.893;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:738,54,0
1	91739414	rs281963	G	A	649.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.60;SB=-4.076e+01;SOR=4.294;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:678,51,0
1	91740105	rs176019	T	G	2771.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-3.490e+02;SOR=3.994;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2800,226,0
1	91781304	rs281991	T	C	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=0.00;SOR=4.804;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
1	91781413	rs281992	T	G	538.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.36;SB=-3.300e+02;SOR=1.022;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:567,42,0
1	91782117	.	TA	T	157.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.13;RPA=12,11;RU=A;ReadPosRankSum=-0.741;SB=0.00;SOR=1.609;STR;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:16:79:195,0,79
1	91793877	rs281972	T	C	506.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-1.205e+02;SOR=2.584;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:535,39,0
1	91794091	rs7541566	G	C	794.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SB=-3.650e+02;SOR=0.990;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:823,60,0
1	91794248	rs281973	G	A	1373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-7.800e+02;SOR=0.941;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1402,102,0
1	91794494	rs3893101	G	A	2287.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-1.018e+03;SOR=1.318;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2316,172,0
1	91813184	rs281936	C	T	682.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-1.205e+02;SOR=3.160;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:711,54,0
1	91841301	rs282036	T	C	1093.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.14;SB=-2.441e+02;SOR=2.833;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1122,81,0
1	91846374	rs282033	C	A	1887.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-1.159e+03;SOR=0.854;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1916,138,0
1	91851253	rs282026	T	C	1857.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-8.980e+02;SOR=1.316;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1886,135,0
1	91859795	rs282009	T	C	2634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-1.676e+03;SOR=0.859;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2663,190,0
1	91967142	.	G	GC	2114.73	PASS	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.46;RPA=1,2;RU=C;SB=-5.660e+02;SOR=2.030;STR;VQSLOD=3.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2152,144,0
1	91973557	rs553606	T	G	1460.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.20;SB=-2.890e+02;SOR=2.885;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1489,111,0
1	91989572	rs488126	T	G	946.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-1.493e+02;SOR=3.258;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:975,72,0
1	92108274	.	T	TA	129.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.27;RPA=13,14;RU=A;ReadPosRankSum=-0.063;SB=-4.702e+01;SOR=1.085;STR;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:15:91:167,0,91
1	92108376	rs367788021	G	A	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.77;ReadPosRankSum=0.820;SB=-1.050e+02;SOR=0.818;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:483,0,282
1	92108899	rs2493202	C	T	3668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-2.145e+03;SOR=0.782;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3697,271,0
1	92174260	rs284878	A	G	6476.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=201;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-3.920e+03;SOR=0.765;VQSLOD=4.36;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,201:201:99:6505,473,0
1	92174415	rs2038931	G	A	852.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.040;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-1.376;SB=-5.500e+01;SOR=0.473;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,29:66:99:881,0,1261
1	92177938	rs1805113	A	G	832.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.968;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=4.294;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=0.362;SB=-3.650e+02;SOR=1.156;VQSLOD=7.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:51,33:84:99:861,0,1582
1	92184814	rs7524066	G	T	1045.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.826;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=7.590;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-2.166;SB=-2.880e+02;SOR=1.756;VQSLOD=6.23;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,39:66:99:1074,0,685
1	92185185	rs2279455	T	C	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.62;ReadPosRankSum=0.191;SB=-9.732e-01;SOR=1.371;VQSLOD=9.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:90:90,0,247
1	92185657	rs1805112	C	T	1246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.900;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=6.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=0.009;SB=-5.150e+02;SOR=0.278;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1275,0,1113
1	92200597	rs12124904	G	A	1534.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=-2.750e+02;SOR=3.160;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1563,117,0
1	92200627	rs10874913	T	C	847.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-8.297e+01;SOR=4.255;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:876,72,0
1	92224067	rs3738441	C	T	394.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.266;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=10.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=1.821;SB=-5.150e-01;SOR=3.912;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:423,0,308
1	92262874	rs2810904	T	C	1197.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-2.870e+02;SOR=2.368;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:93:1226,93,0
1	92327045	rs1805110	G	A	953.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.374;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.927;HaplotypeScore=4.4787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.532;SB=-5.050e+02;SOR=0.446;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,35:77:99:982,0,1139
1	92327126	rs1805109	C	T	1214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.918;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=4.835;HaplotypeScore=7.0537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-1.790;SB=-8.260e+02;SOR=0.360;VQSLOD=7.63;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:56,52:108:99:1243,0,1497
1	92433595	rs7541712	C	T	662.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=0.00;SOR=5.784;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:691,51,0
1	92442695	rs1156281	A	C	1938.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-1.108e+03;SOR=0.865;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1967,141,0
1	92568263	rs527412	A	G	1187.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-4.090e+02;SOR=2.073;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1216,87,0
1	92606638	.	T	C	224.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.006;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.77;ReadPosRankSum=0.757;SB=-6.200e+01;SOR=0.321;VQSLOD=6.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,9:23:99:253,0,427
1	92646021	rs1483022	G	A	1967.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-9.120e+02;SOR=1.255;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1996,147,0
1	92647223	rs560389	A	G	1699.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=-9.320e+02;SOR=0.733;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1728,129,0
1	92647532	rs565156	C	A	2433.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-1.289e+03;SOR=1.068;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2462,181,0
1	92649292	rs570368	A	T	509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=0.00;SOR=5.421;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:538,42,0
1	92649312	rs369303848	G	GTT	319.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.84;RPA=15,17;RU=T;SB=0.00;SOR=5.421;STR;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:16:36:357,36,0
1	92649335	rs569593	A	G	586.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2222;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.67;SB=-8.297e+01;SOR=3.816;VQSLOD=4.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:615,54,0
1	92711067	rs3131827	A	T	1202.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-3.130e+02;SOR=2.554;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1231,90,0
1	92712266	rs974924	C	T	1093.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-3.830e+02;SOR=1.949;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1122,84,0
1	92712598	rs35752451	GAA	G	2063.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.44;RPA=4,2;RU=A;SB=-6.670e+02;SOR=1.666;STR;VQSLOD=3.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:42:99:2101,123,0
1	92735359	rs1487540	T	C	1212.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-5.470e+02;SOR=1.445;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1241,90,0
1	92755943	rs3103178	G	A	730.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=0.00;SOR=5.994;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:759,57,0
1	92764828	rs10875348	T	A	339.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-1.185e+02;SOR=1.802;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:368,27,0
1	92765848	rs1542685	A	T	933.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-3.150e+02;SOR=1.863;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:962,72,0
1	92852504	rs10747411	A	G	696.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.80;SB=-3.970e+02;SOR=1.220;VQSLOD=4.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:54:725,54,0
1	92944314	.	C	CAG	450.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=1.099;POSITIVE_TRAIN_SITE;QD=21.46;RPA=18,19;RU=AG;ReadPosRankSum=0.560;SB=0.00;SOR=1.508;STR;VQSLOD=3.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,14:34:99:488,0,217
1	92946479	rs11164605	G	A	612.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.04;SB=-3.080e+02;SOR=0.914;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:641,48,0
1	92979092	rs146230362	ATATATATATATATATATATATATATATATATG	A	2939.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.56;ReadPosRankSum=-0.674;SB=-3.528e+02;SOR=1.802;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,9:13:3:2975,0,3
1	92979354	rs6603979	A	G	3664.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-1.707e+03;SOR=1.295;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:112:99:3693,265,0
1	93029453	rs6656432	A	G	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=0.00;SOR=4.804;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
1	93071048	rs2050597	G	T	1408.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-1.653e+02;SOR=4.073;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:42:99:1437,108,0
1	93089823	rs7514716	T	C	556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.51;SB=-3.670e+02;SOR=0.990;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:42:585,42,0
1	93128514	.	T	TA	397.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;DP=29;ExcessHet=3.0103;FS=5.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;RPA=15,16;RU=A;ReadPosRankSum=0.425;SB=-1.401e+02;SOR=0.118;STR;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,21:29:73:435,0,73
1	93128854	rs10747450	A	G	583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=0.00;SOR=5.549;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:612,45,0
1	93160902	rs2391199	T	C	2360.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-1.504e+03;SOR=0.850;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2389,172,0
1	93163385	rs7418336	A	G	1227.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-5.180e+02;SOR=1.609;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1256,96,0
1	93167854	rs10218670	A	G	432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-8.097e+01;SOR=3.126;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:461,33,0
1	93306317	rs10874744	G	A	3541.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-2.201e+03;SOR=0.763;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3570,262,0
1	93426866	rs945629	T	C	259.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.98;SB=-1.851e+02;SOR=0.693;VQSLOD=4.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:288,21,0
1	93426869	rs1415069	G	C	265.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.58;SB=-2.001e+02;SOR=0.693;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:294,21,0
1	93545157	rs2815419	G	A	746.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.585;HaplotypeScore=28.4536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=1.191;SB=-3.380e+02;SOR=0.770;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,25:65:99:775,0,918
1	93576302	rs494745	T	G	695.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=0.00;SOR=5.892;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:724,54,0
1	93580581	rs2815427	G	C	2961.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-1.755e+03;SOR=0.914;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2990,214,0
1	93580879	rs2295424	T	C	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-1.697;SB=-4.276e+01;SOR=0.093;VQSLOD=7.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:162,0,244
1	93580992	rs566843	C	T	491.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=26.6867;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-1.248;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-1.332;SB=-8.400e+01;SOR=0.813;VQSLOD=2.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,18:49:99:520,0,980
1	93581024	rs2295423	T	C	908.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.757;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=2.441;HaplotypeScore=23.6981;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=-1.238;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.847;SB=-1.500e+02;SOR=1.337;VQSLOD=0.242;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,32:83:99:937,0,1463
1	93592577	rs490153	T	A	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.525;SB=0.00;SOR=0.859;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:202,0,167
1	93602194	rs2281524	C	T	917.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-2.171e+02;SOR=2.376;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:69:946,69,0
1	93620393	rs1060622	G	A	1465.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.546;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.605;HaplotypeScore=4.4085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-0.115;SB=-6.060e+02;SOR=0.874;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,54:106:99:1494,0,1253
1	93620520	rs6670332	T	C	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.235;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.874;SB=-7.200e+01;SOR=0.288;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:380,0,472
1	93621483	rs1057257	A	G	292.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.216;SB=-6.600e+01;SOR=0.368;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:321,0,328
1	93646207	rs2297707	T	C	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.355;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-0.733;SB=-1.800e+02;SOR=1.081;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:483,0,500
1	93646418	rs10874763	C	T	541.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.998;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.453;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=0.365;SB=-2.040e+02;SOR=1.230;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,19:33:99:570,0,279
1	93648816	rs2815409	A	G	630.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=0.00;SOR=5.670;VQSLOD=8.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:48:659,48,0
1	93649732	rs6682670	A	G	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.382;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.586;SB=0.00;SOR=0.430;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:338,0,488
1	93659350	rs2815411	A	T	553.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-1.165e+02;SOR=2.833;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:582,45,0
1	93672723	rs2815413	A	C	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.423;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-0.847;SB=-5.500e+01;SOR=0.765;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,12:30:99:361,0,562
1	93676314	rs555161	A	G	262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.773;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=1.459;SB=0.00;SOR=0.481;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,10:23:99:291,0,444
1	93682155	.	T	TA	193.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.40;RPA=6,7;RU=A;ReadPosRankSum=-0.516;SB=-2.703e+01;SOR=0.818;STR;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:231,0,171
1	93691855	rs34227600	GT	G	95.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DB;DP=22;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=-1.005;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=4.79;RPA=16,15;RU=T;ReadPosRankSum=0.229;SB=-2.901e+01;SOR=1.828;STR;VQSLOD=0.192;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:22:99:133,0,192
1	93698222	rs661566	C	G	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.175;SB=0.00;SOR=0.859;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:206,0,145
1	93711782	rs3754186	T	A	552.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.355;SB=-2.590e+02;SOR=0.527;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,22:38:99:581,0,430
1	93711793	rs3754187	T	G	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.870;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.926;SB=-1.640e+02;SOR=0.724;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,15:38:99:415,0,581
1	93744055	rs10874767	G	A	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.744;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.28;ReadPosRankSum=0.806;SB=-9.000e+01;SOR=1.349;VQSLOD=7.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,9:25:99:227,0,437
1	93998640	rs34814765	AT	A	742.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;DB;DP=37;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.22;RPA=2,1;RU=T;ReadPosRankSum=0.051;SB=-1.570e+02;SOR=0.235;STR;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,21:37:99:780,0,484
1	94002233	rs3767967	A	G	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-0.562;SB=0.00;SOR=0.582;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:230,0,269
1	94041787	rs34974123	G	GAC	2556.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;RPA=2,3;RU=AC;SB=-7.100e+02;SOR=2.004;STR;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:66:99:2594,154,0
1	94054382	rs236319	T	C	311.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.98;SB=-1.393e+02;SOR=1.445;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:340,24,0
1	94312482	.	T	TC	1465.73	PASS	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.18;RPA=1,2;RU=C;SB=-5.990e+02;SOR=1.179;STR;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:34:99:1503,99,0
1	94312528	.	G	GC	1332.73	PASS	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.36;RPA=1,2;RU=C;SB=-6.690e+02;SOR=0.693;STR;VQSLOD=4.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1370,90,0
1	94312533	.	G	GC	555.73	PASS	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.85;RPA=1,2;RU=C;SB=-1.883e+02;SOR=1.609;STR;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:593,39,0
1	94312543	.	C	CCG	489.73	PASS	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.73;SB=-1.086e+02;SOR=1.981;VQSLOD=3.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:35:527,35,0
1	94335643	.	G	GA	631.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;DP=48;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;RPA=6,7;RU=A;ReadPosRankSum=0.166;SB=-1.790e+02;SOR=1.143;STR;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,25:48:99:669,0,430
1	94336498	.	C	CA	172.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.51;RPA=12,13;RU=A;ReadPosRankSum=0.832;SB=-1.773e+00;SOR=1.609;STR;VQSLOD=8.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,11:26:99:210,0,186
1	94341267	rs2273165	A	G	553.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.256;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=-0.273;SB=-2.880e+02;SOR=0.693;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,24:61:99:582,0,971
1	94342564	rs3747965	C	A	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-0.286;SB=-1.160e+02;SOR=0.813;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,17:43:99:503,0,858
1	94343023	rs2391322	A	G	781.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.587;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.926;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=2.172;SB=-4.180e+02;SOR=0.529;VQSLOD=7.54;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:43,28:71:99:810,0,1266
1	94343233	rs3789457	T	C	1752.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.736;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=1.335;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.717;SB=-1.136e+03;SOR=0.656;VQSLOD=7.59;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,68:140:99:1781,0,1965
1	94344716	rs2235971	C	T	2631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DB;DP=185;Dels=0.00;ExcessHet=3.0103;FS=4.217;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.776;SB=-1.406e+03;SOR=0.999;VQSLOD=7.10;culprit=DP	GT:AD:DP:GQ:PL	0/1:90,95:185:99:2660,0,2412
1	94463767	rs10874825	C	T	677.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.425;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.186;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-0.984;SB=-2.190e+02;SOR=0.927;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:706,0,611
1	94463768	rs10874826	T	C	693.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.980;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.186;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-0.906;SB=-2.460e+02;SOR=0.927;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:722,0,591
1	94463795	rs10874827	C	G	447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.339;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=1.303;SB=-1.905e+01;SOR=1.012;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:476,0,581
1	94466659	RISN_ABCR	A	G	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=0.302;SB=-1.980e+02;SOR=0.307;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,19:30:99:495,0,326
1	94467008	rs12086793	C	T	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.926;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-0.616;SB=0.00;SOR=0.616;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:361,0,413
1	94467221	rs4147865	G	A	1465.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.276;SB=-7.250e+02;SOR=0.676;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,49:94:99:1494,0,1184
1	94467238	rs4147864	G	A	1509.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.623;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=1.628;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.429;SB=-6.860e+02;SOR=0.906;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,54:101:99:1538,0,1235
1	94467407	RISN_ABCR	C	T	682.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=6.604;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=-0.259;SB=-2.560e+02;SOR=1.256;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,30:67:99:711,0,1129
1	94467447	RISN_ABCR	G	A	751.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.962;HaplotypeScore=1.8625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-1.070;SB=-4.240e+02;SOR=0.672;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,27:63:99:780,0,1041
1	94471075	rs1762114	A	G	847.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-1.732;SB=-5.350e+02;SOR=0.763;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,35:75:99:876,0,1203
1	94471223	rs2275028	C	T	627.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=9.879;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-0.722;SB=-5.300e+01;SOR=2.655;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:656,0,434
1	94474020	rs1191234	G	A	379.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.11;SB=-4.176e+01;SOR=3.258;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:408,30,0
1	94476555	rs537831	G	A	475.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-1.543e+02;SOR=1.911;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:504,36,0
1	94480037	rs2275033	C	T	82.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.14;ReadPosRankSum=0.568;SB=-6.200e+01;SOR=0.269;VQSLOD=6.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:111,0,507
1	94487354	rs472908	G	A	2445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-1.280e+03;SOR=1.051;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2474,184,0
1	94495407	rs4147846	C	T	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.89;ReadPosRankSum=-2.477;SB=-1.230e+02;SOR=0.495;VQSLOD=8.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:265,0,525
1	94495417	rs4147845	C	T	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.714;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=-1.895;SB=-5.900e+01;SOR=0.760;VQSLOD=8.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,9:28:99:249,0,542
1	94495487	rs4147844	G	A	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.60;ReadPosRankSum=1.209;SB=-5.150e-01;SOR=2.215;VQSLOD=6.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:127,0,255
1	94495816	rs4147843	T	C	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=0.752;SB=0.00;SOR=0.976;VQSLOD=10.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:277,0,200
1	94495930	rs547806	T	C	2496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=-5.160e+02;SOR=2.802;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2525,184,0
1	94496253	rs2297671	G	A	873.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.126;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-1.069;SB=-1.390e+02;SOR=0.748;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,32:56:99:902,0,730
1	94497178	rs4147841	G	A	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.172;SB=-9.900e+01;SOR=1.140;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:241,0,254
1	94509226	rs4147839	G	T	460.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.363;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.153;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-0.158;SB=-9.732e-01;SOR=2.419;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:489,0,492
1	94511533	rs3789398	G	A	553.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.913;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.285;SB=-8.400e+01;SOR=0.492;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,19:36:99:582,0,520
1	94528363	RISN_ABCR	C	T	397.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.017;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=1.164;SB=-1.270e+02;SOR=0.653;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,15:41:99:426,0,699
1	94544276	RISN_ABCR	G	A	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.474;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=0.731;SB=-3.040e+02;SOR=0.343;VQSLOD=7.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,20:41:99:402,0,596
1	94544326	rs3215952	GT	G	514.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DB;DP=29;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;RPA=2,1;RU=T;ReadPosRankSum=0.530;SB=-1.260e+02;SOR=0.223;STR;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:29:99:552,0,492
1	94545160	rs2275035	C	T	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.287;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=-1.825;SB=-1.490e+02;SOR=1.004;VQSLOD=7.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,13:33:99:277,0,712
1	94549083	rs574741	T	C	962.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.921;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=7.208;HaplotypeScore=3.6199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.888;SB=-2.240e+02;SOR=1.643;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,34:71:99:991,0,864
1	94568822	rs2297636	T	C	448.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.528;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.586;SB=-1.000e+02;SOR=0.473;VQSLOD=8.83;culprit=SOR	GT:AD:DP:GQ:PL	0/1:18,18:36:99:477,0,512
1	94574053	rs11165073	C	A	1850.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-4.290e+02;SOR=2.644;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1879,138,0
1	94574342	RISN_ABCR	AT	A	119.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.21;RPA=12,11;RU=T;ReadPosRankSum=-0.422;SB=0.00;SOR=1.179;STR;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:17:99:157,0,102
1	94576893	rs2297635	G	A	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=6.864;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=1.233;SB=-9.732e-01;SOR=2.964;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:297,0,279
1	94576968	RISN_ABCR	T	C	1777.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-4.370e+02;SOR=2.256;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1806,138,0
1	94619937	rs78905824	G	A	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.898;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=1.200;SB=-5.150e-01;SOR=2.461;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:255,0,329
1	94639337	rs1330858	A	G	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.02;SB=0.00;SOR=5.670;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:628,48,0
1	94639447	rs1999272	C	T	3460.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.93;SB=-8.630e+02;SOR=2.595;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3489,259,0
1	94667430	.	G	GA	396.73	PASS	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.45;RPA=9,10;RU=A;SB=-3.377e+01;SOR=4.047;STR;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:19:45:434,45,0
1	94668046	rs1541099	C	T	2183.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-1.158e+03;SOR=1.011;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2212,163,0
1	94670784	rs10443184	T	C	292.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.897;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.593;SB=-1.310e+02;SOR=0.307;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:24:99:321,0,275
1	94674723	rs6684237	G	A	1317.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-5.560e+02;SOR=1.347;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1346,99,0
1	94674726	rs2274788	T	C	520.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.464;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.240;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-1.138;SB=-2.670e+02;SOR=0.404;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:549,0,664
1	94924046	rs2147794	A	G	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.000;SB=-1.766e+00;SOR=1.230;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:198,0,273
1	94930345	rs16946	G	A	814.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=2.722;SB=-5.420e+02;SOR=0.754;VQSLOD=8.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:41,36:77:99:843,0,1024
1	94941376	rs681187	G	A	563.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.67;SB=0.00;SOR=5.549;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:592,45,0
1	94980671	rs3118109	C	G	1419.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-8.890e+02;SOR=0.952;VQSLOD=4.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1448,102,0
1	94995819	rs3354	C	T	272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.395;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.245;SB=0.00;SOR=0.602;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:301,0,346
1	94997751	rs200985472	C	G	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=63.93;MQ0=0;MQRankSum=3.938;QD=9.05;ReadPosRankSum=1.735;SB=0.00;SOR=0.340;VQSLOD=1.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:173,0,338
1	94997751	rs66855746	CA	C	160.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.93;MQ0=0;MQRankSum=3.938;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=1.735;SB=0.00;SOR=0.340;VQSLOD=2.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:198,0,428
1	95001600	rs698946	A	C	3797.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-2.280e+03;SOR=0.709;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3826,289,0
1	95211285	rs6541364	C	T	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=-1.320;SB=0.00;SOR=0.693;VQSLOD=10.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:235,0,246
1	95211525	rs1333953	G	A	3073.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-1.555e+03;SOR=1.132;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3102,232,0
1	95286094	rs10782992	G	T	344.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=-2.061e+02;SOR=1.022;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:373,27,0
1	95286658	rs6676991	C	A	2605.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.859;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=0.222;POSITIVE_TRAIN_SITE;QD=31.78;ReadPosRankSum=-0.824;SB=-1.399e+03;SOR=0.502;VQSLOD=3.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,81:82:99:2634,193,0
1	95286675	rs11274910	GTCCCAAATGTAAA	G	10112.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;SB=-4.419e+03;SOR=0.966;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:75:99:10150,193,0
1	95290003	rs6687749	C	T	1287.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-4.760e+02;SOR=1.845;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1316,99,0
1	95290305	rs6541372	T	C	549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-8.297e+01;SOR=3.258;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:578,42,0
1	95291348	rs116257850	G	A	923.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=1.898;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-0.335;SB=-5.650e+02;SOR=0.446;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,36:79:99:952,0,1252
1	95291366	rs10874894	A	G	2631.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-1.394e+03;SOR=0.961;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2660,196,0
1	95291479	rs12057188	A	C	1470.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.510;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=0.498;SB=-7.020e+02;SOR=0.665;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,53:99:99:1499,0,1107
1	95293005	rs17407097	A	G	827.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.679;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=6.131;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=-0.005;SB=-2.760e+02;SOR=1.397;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,31:80:99:856,0,1362
1	95294089	rs2640065	T	C	1860.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.927;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.733;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=0.229;SB=-9.960e+02;SOR=0.542;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,69:114:99:1889,0,1100
1	95305440	rs859120	A	G	545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.316;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.241;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=-0.573;SB=-3.750e+02;SOR=0.374;VQSLOD=7.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,24:63:99:574,0,1091
1	95330372	rs859098	G	A	2634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-1.125e+03;SOR=1.402;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2663,199,0
1	95332814	rs74104711	C	T	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=1.068;SB=-9.900e+01;SOR=0.446;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:430,0,341
1	95333068	rs859096	G	T	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.340;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.267;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=1.199;SB=-1.890e+02;SOR=1.201;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:545,0,677
1	95358096	rs859063	A	G	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.062;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.638;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=1.127;SB=-1.400e+02;SOR=0.245;VQSLOD=7.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,13:35:99:334,0,642
1	95367108	rs138718825	ACC	AC,A	431.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;RPA=10,9,8;RU=C;SB=-3.719e+01;SOR=3.767;STR;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,6,7:13:99:469,233,197,190,0,176
1	95367136	rs859059	G	A	663.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-1.603e+02;SOR=2.636;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:692,54,0
1	95367649	rs859058	T	C	1093.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.396;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=-0.618;SB=-6.500e+02;SOR=0.649;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,43:101:99:1122,0,1602
1	95367894	rs859057	A	C	488.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=-4.276e+01;SOR=3.912;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:517,39,0
1	95369211	rs859054	T	G	1652.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=-5.350e+02;SOR=2.030;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1681,123,0
1	95392593	rs11540278	C	T	230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.326;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.347;SB=-3.300e+01;SOR=0.368;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:259,0,356
1	95427041	rs3831103	AT	A	232.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.92;RPA=13,12;RU=T;ReadPosRankSum=0.134;SB=-5.397e+01;SOR=1.473;STR;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:15:13:270,13,0
1	95428414	rs2766005	G	A	1813.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-2.740e+02;SOR=3.570;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1842,138,0
1	95428455	.	C	CT	1305.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.12;RPA=15,16;RU=T;ReadPosRankSum=0.305;SB=-2.765e+02;SOR=0.941;STR;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,65:85:99:1283,0,112
1	95449033	rs2298162	T	C	812.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-2.061e+02;SOR=2.670;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:841,66,0
1	95492814	rs199810632	A	G	561.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.667;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.378;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.18;ReadPosRankSum=0.289;SB=-2.140e+02;SOR=0.439;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:590,0,566
1	95614215	rs76921353	G	A	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.229;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=2.212;SB=-2.402e+01;SOR=1.508;VQSLOD=6.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:163,0,259
1	95615678	rs76086699	T	C	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-0.566;SB=-4.276e+01;SOR=0.141;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:217,0,167
1	95615888	rs35206271	T	C	353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.854;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.508;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-0.330;SB=-1.640e+02;SOR=0.283;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,15:34:99:382,0,557
1	95696612	rs6663164	C	T	2060.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-5.140e+02;SOR=2.658;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2089,157,0
1	95705615	rs640527	G	A	1134.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-2.630e+02;SOR=2.584;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1163,84,0
1	95709821	rs259358	T	C	3210.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-1.494e+03;SOR=1.157;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3239,238,0
1	95709939	rs2296308	T	G	3154.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-1.627e+03;SOR=0.953;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3183,232,0
1	96488174	rs161128	A	G	1981.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-1.173e+03;SOR=0.814;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2010,147,0
1	96488206	rs12119760	G	A	877.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.067;SB=-4.100e+02;SOR=0.660;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,33:64:99:906,0,756
1	96488261	rs1146527	A	T	1257.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-3.150e+02;SOR=2.670;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1286,96,0
1	96488283	rs1146528	T	C	966.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-2.411e+02;SOR=2.376;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:995,72,0
1	97544760	rs17116357	C	G	481.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=1.713;SB=-3.377e+01;SOR=0.527;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,15:24:99:510,0,253
1	97544771	rs290855	T	C	80.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.05;ReadPosRankSum=-1.517;SB=0.00;SOR=0.138;VQSLOD=9.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:109,0,415
1	97547831	rs290854	G	A	1357.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-2.800e+02;SOR=3.003;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1386,105,0
1	97771947	rs7556439	C	A	266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-0.301;SB=-3.400e+01;SOR=0.392;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:295,0,431
1	97839016	rs1890138	A	G	1264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.099;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=11.146;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=1.234;SB=-3.540e+02;SOR=1.863;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,47:93:99:1293,0,1069
1	97847874	rs72728438	T	C	366.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.921;SB=-1.190e+02;SOR=0.418;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:27:99:395,0,309
1	97848140	rs56279424	G	T	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=1.242;SB=0.00;SOR=0.412;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:124,0,216
1	97981242	rs2811178	T	C	1013.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-3.377e+01;SOR=5.211;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:1042,78,0
1	98348885	rs1801265	G	A	593.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.324;HaplotypeScore=2.6000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=0.924;SB=-2.870e+02;SOR=1.113;VQSLOD=7.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:51,25:77:99:622,0,1202
1	98349390	.	C	CA	379.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.523;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.10;RPA=11,12;RU=A;ReadPosRankSum=-1.549;SB=-1.464e+02;SOR=1.244;STR;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,16:21:33:417,33,0
1	99150635	rs9433747	G	A	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=6.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=0.884;SB=-5.200e+01;SOR=2.303;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,13:32:99:368,0,502
1	99225627	rs2019213	G	A	1451.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-6.480e+02;SOR=1.378;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1480,108,0
1	99358358	rs984271	G	T	325.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-4.176e+01;SOR=3.258;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:354,27,0
1	99387628	rs34854879	T	TA	1775.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;RPA=8,9;RU=A;SB=-3.220e+02;SOR=2.910;STR;VQSLOD=4.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:69:99:1813,180,0
1	99418647	rs309087	G	C	1114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.908;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=7.997;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.779;SB=-2.100e+02;SOR=1.650;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,38:96:99:1143,0,1752
1	99418948	.	T	TGA,TGTGTGA	1481.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.13;SB=-6.119e+01;SOR=4.804;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,8,14:24:99:1519,743,706,353,0,356
1	99470269	rs12057990	T	C	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.709;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.654;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=1.752;SB=-6.100e+01;SOR=1.061;VQSLOD=7.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,12:32:99:328,0,595
1	99766253	rs819915	C	G	367.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.82;SB=0.00;SOR=4.804;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:396,30,0
1	100111956	rs834997	A	G	800.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.817;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=-0.826;SB=-2.080e+02;SOR=1.022;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:829,0,635
1	100184963	.	CA	C	97.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=21;ExcessHet=3.0103;FS=7.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.89;RPA=20,19;RU=A;ReadPosRankSum=0.418;SB=-4.897e+01;SOR=0.048;STR;VQSLOD=6.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:21:99:135,0,177
1	100316589	rs2307130	A	G	1265.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-5.070e+02;SOR=1.493;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1294,93,0
1	100316765	rs663848	C	T	1236.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-3.950e+02;SOR=2.073;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1265,93,0
1	100329889	rs535461	G	C	1765.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.25;SB=-3.770e+02;SOR=2.701;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1794,132,0
1	100330237	rs538389	A	G	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.01;SB=0.00;SOR=4.804;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
1	100335883	rs903126	A	G	932.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.55;SB=-8.297e+01;SOR=4.332;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:961,78,0
1	100336361	rs2230306	C	T	1324.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-7.150e+02;SOR=1.005;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1353,99,0
1	100340225	rs634880	G	A	1606.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;SB=-2.680e+02;SOR=3.258;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1635,123,0
1	100340787	rs17121464	G	A	2425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-1.519e+03;SOR=0.770;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2454,178,0
1	100342227	rs3736295	C	T	1379.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-1.593e+02;SOR=3.855;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1408,105,0
1	100343073	rs2291637	T	A	1148.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=0.00;SOR=6.869;VQSLOD=4.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1177,90,0
1	100343153	rs2291638	A	G	2305.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-5.920e+02;SOR=2.743;VQSLOD=4.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2334,184,0
1	100345409	rs2392077	C	G	622.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.18;SB=-4.276e+01;SOR=4.294;VQSLOD=3.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:651,48,0
1	100346741	rs3736296	T	C	2980.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-1.832e+03;SOR=0.693;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3009,217,0
1	100350383	rs2234707	G	A	406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=0.00;SOR=5.136;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:435,33,0
1	100353675	rs555929	G	A	4028.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-1.759e+03;SOR=1.455;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4057,292,0
1	100357041	rs2035960	A	G	495.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.44;SB=-1.653e+02;SOR=1.609;VQSLOD=4.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:524,39,0
1	100357141	rs2035961	T	A	1289.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-2.311e+02;SOR=3.145;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1318,102,0
1	100358200	rs594249	G	A	1083.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.86;SB=-8.097e+01;SOR=4.548;VQSLOD=3.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:84:1112,84,0
1	100366446	rs35956186	GTT	G	1403.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.863;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQ0=0;MQRankSum=0.323;POSITIVE_TRAIN_SITE;QD=26.99;RPA=15,13;RU=T;ReadPosRankSum=0.462;SB=-2.540e+02;SOR=1.893;STR;VQSLOD=2.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:8,44:68:82:1373,82,0
1	100376448	rs2274570	G	A	1222.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.97;SB=-3.140e+02;SOR=2.432;VQSLOD=7.42;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1251,93,0
1	100376456	rs1541041	T	A	1066.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.41;SB=-2.401e+02;SOR=2.694;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1095,81,0
1	100533960	rs6687189	G	A	1141.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.78;SB=-7.597e+01;SOR=4.615;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:87:1170,87,0
1	100568759	rs544225	C	G	676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=0.00;SOR=5.892;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:705,54,0
1	100575933	rs13375867	G	A	4012.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-1.919e+03;SOR=1.294;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4041,298,0
1	100588105	rs71075469	C	CT	82.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.60;RPA=21,22;RU=T;ReadPosRankSum=1.201;SB=0.00;SOR=0.512;STR;VQSLOD=8.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,8:25:99:120,0,120
1	100598866	rs472498	G	A	1507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.27;SB=-2.800e+02;SOR=2.885;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1536,114,0
1	100598867	rs687513	C	T	1557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-3.560e+02;SOR=2.687;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1586,117,0
1	100617887	rs2784177	C	T	616.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2482;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-1.075e+02;SOR=3.056;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:645,48,0
1	100671628	.	TA	T	455.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.553;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.86;MQ0=0;MQRankSum=0.588;POSITIVE_TRAIN_SITE;QD=18.23;RPA=18,17;RU=A;ReadPosRankSum=-0.116;SB=-2.720e+01;SOR=2.584;STR;VQSLOD=1.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,24:25:46:389,46,0
1	100671865	.	T	A	1705.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=28.3127;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=1.904;QD=23.69;ReadPosRankSum=0.149;SB=-7.690e+02;SOR=0.662;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,56:72:99:1734,0,330
1	100672060	rs12021720	T	C	2449.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-1.430e+03;SOR=0.908;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2478,181,0
1	100680593	.	C	CT	149.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=0.849;POSITIVE_TRAIN_SITE;QD=9.98;RPA=14,15;RU=T;ReadPosRankSum=-0.800;SB=0.00;SOR=1.473;STR;VQSLOD=3.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,10:19:59:187,0,59
1	100715454	rs3806235	G	A	1576.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-3.590e+02;SOR=2.833;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1605,123,0
1	100731819	rs11406239	C	CA	463.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=0.00;SOR=4.977;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:501,33,0
1	100731820	rs57327535	G	A	410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=0.00;SOR=4.977;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:439,33,0
1	100733207	.	G	GT	534.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.315;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;MQRankSum=0.462;POSITIVE_TRAIN_SITE;QD=19.10;RPA=14,15;RU=T;ReadPosRankSum=-0.632;SB=-2.298e+02;SOR=0.663;STR;VQSLOD=3.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,25:35:22:572,22,0
1	100733552	rs4298755	T	C	1014.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.56;SB=-4.276e+01;SOR=5.211;VQSLOD=3.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:1043,78,0
1	100742670	rs4495726	A	G	941.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=0.00;SOR=6.666;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:970,81,0
1	100743078	rs4433415	A	G	531.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=0.00;SOR=5.421;VQSLOD=8.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:560,42,0
1	100750733	rs58046505	AGTTTT	A	4910.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;RPA=6,5;RU=GTTTT;SB=-8.170e+02;SOR=3.116;STR;VQSLOD=3.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:83:99:4948,232,0
1	100751055	rs10875286	G	C	522.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;SB=0.00;SOR=5.421;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:551,42,0
1	100798137	rs7534479	G	A	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-0.707;SB=-9.301e+01;SOR=0.223;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:210,0,158
1	100817529	rs35169146	AGT	A	189.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQ0=0;MQRankSum=0.319;POSITIVE_TRAIN_SITE;QD=23.72;RPA=15,14;RU=GT;ReadPosRankSum=-0.489;SB=0.00;SOR=2.833;STR;VQSLOD=1.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:10:18:227,0,18
1	100818464	rs594529	T	C	807.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-4.120e+02;SOR=1.302;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:836,60,0
1	100961419	rs2270692	A	G	610.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=0.00;SOR=5.670;VQSLOD=8.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:48:639,48,0
1	100961779	rs149672640	ATT	A	254.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.335;DB;DP=15;ExcessHet=3.0103;FS=7.404;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.16;RPA=15,13;RU=T;ReadPosRankSum=1.097;SB=-3.073e+00;SOR=4.615;STR;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,9:15:22:292,22,0
1	100963418	rs904296	T	G	313.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.15;SB=-1.225e+02;SOR=1.981;VQSLOD=4.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:342,27,0
1	100963479	rs35904273	CAG	C	1080.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;RPA=2,1;RU=AG;SB=-4.770e+02;SOR=0.990;STR;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:1118,63,0
1	101005090	rs2809819	G	A	519.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.63;SB=-3.550e+02;SOR=0.874;VQSLOD=3.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:39:548,39,0
1	101189027	rs1476408	C	G	909.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.27;SB=0.00;SOR=6.358;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:938,69,0
1	101190173	rs2392221	C	T	548.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.427;SB=-2.080e+02;SOR=0.582;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:577,0,710
1	101194965	.	G	GT	619.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;DP=82;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;RPA=11,12;RU=T;ReadPosRankSum=-0.891;SB=-2.140e+02;SOR=0.911;STR;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,32:82:99:657,0,707
1	101199979	rs3176875	A	G	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=0.00;SOR=4.977;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:406,30,0
1	101203827	rs3176879	G	A	3246.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-1.953e+03;SOR=0.849;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3275,238,0
1	101372607	rs4908106	C	A	372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-4.276e+01;SOR=3.442;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:401,30,0
1	101704532	rs3737577	G	T	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.179;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=3.303;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.583;SB=-8.800e+01;SOR=1.473;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:690,0,731
1	101705933	.	C	A	700.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.567;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.087;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.30;ReadPosRankSum=-0.412;SB=-3.620e+02;SOR=0.891;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,27:49:99:729,0,611
1	102252638	rs62620229	T	C	322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=0;MQRankSum=1.488;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.952;SB=-1.340e+02;SOR=0.836;VQSLOD=3.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,11:21:99:351,0,265
1	102271774	rs4907955	G	A	1940.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.895;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.507;SB=-6.720e+02;SOR=0.658;VQSLOD=8.06;culprit=DP	GT:AD:DP:GQ:PL	0/1:80,71:151:99:1969,0,2294
1	103343671	.	A	G	347.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.866;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-0.941;SB=-1.150e+02;SOR=0.793;VQSLOD=7.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,14:36:99:376,0,598
1	103352451	rs2229783	A	G	1352.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=4.921;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.370;SB=-6.870e+02;SOR=0.667;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,50:102:99:1381,0,1333
1	103354115	rs17127203	T	C	737.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=0.140;SB=-3.580e+02;SOR=0.901;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,28:43:99:766,0,446
1	103354138	rs1676486	A	G	541.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.176;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-1.180;SB=-2.310e+02;SOR=0.699;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,19:51:99:570,0,830
1	103354428	rs1763347	A	G	1031.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.277;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=2.970;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-1.002;SB=-4.950e+02;SOR=1.089;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,40:81:99:1060,0,1229
1	103356107	rs11164634	A	G	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=-0.098;SB=-1.430e+02;SOR=0.813;VQSLOD=10.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:213,0,139
1	103379918	rs3753841	G	A	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.01;ReadPosRankSum=-1.662;SB=-2.130e+02;SOR=0.574;VQSLOD=6.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,15:54:99:245,0,1078
1	103380379	.	T	TA	364.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;RPA=13,14;RU=A;ReadPosRankSum=0.400;SB=-5.797e+01;SOR=0.504;STR;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,18:29:42:402,0,42
1	103381129	rs4908273	C	T	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.706;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-0.665;SB=-1.000e+02;SOR=0.693;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:365,0,551
1	103400491	.	G	A	776.77	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.77;SB=-4.176e+01;SOR=4.892;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:63:805,63,0
1	103400492	rs11164642	A	T	815.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.545;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.76;ReadPosRankSum=-1.132;SB=-4.176e+01;SOR=3.442;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,22:23:63:844,63,0
1	103428389	rs1841834	G	A	877.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-2.680e+02;SOR=2.147;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:906,66,0
1	103444679	rs11164649	T	G	990.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-5.770e+02;SOR=1.022;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1019,75,0
1	103449598	rs2615978	G	C	435.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-1.195e+02;SOR=2.303;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:464,33,0
1	103455217	rs1463034	C	T	691.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.59;SB=-1.543e+02;SOR=2.531;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:720,54,0
1	103461508	rs2622867	T	A	839.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-4.000e+02;SOR=1.382;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:868,63,0
1	103462473	rs2786125	A	G	425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.76;SB=0.00;SOR=4.977;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:454,33,0
1	103463976	rs2622870	G	T	1710.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-4.390e+02;SOR=2.494;VQSLOD=7.12;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1739,129,0
1	103464061	rs10874672	T	A	844.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=0.00;SOR=6.358;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:873,66,0
1	103467615	rs2929162	C	T	795.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-8.097e+01;SOR=4.255;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:824,66,0
1	103468306	.	G	A	495.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.012;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.39;ReadPosRankSum=0.014;SB=-2.690e+02;SOR=0.896;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:40:99:524,0,538
1	103468609	rs2251895	A	G	1309.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-4.750e+02;SOR=1.775;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1338,99,0
1	103471456	rs71752747	CCAT	C	2145.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.11;RPA=10,9;RU=CAT;SB=-9.280e+02;SOR=1.005;STR;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:52:99:2183,126,0
1	103471734	.	A	AAAATAAATAAAT,AAAATAAAT	2348.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;RPA=7,10,9;RU=AAAT;SB=-7.960e+02;SOR=1.085;STR;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,12,10:35:99:2386,440,443,683,0,619
1	103483514	rs945748	C	T	1004.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-2.001e+02;SOR=3.056;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1033,78,0
1	103487394	rs35291481	CT	C	382.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.472;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.14;RPA=11,10;RU=T;ReadPosRankSum=0.913;SB=-3.077e+01;SOR=3.056;STR;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,18:21:29:420,29,0
1	103496620	rs7523441	G	T	1224.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-3.860e+02;SOR=2.073;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1253,90,0
1	103496805	rs36076089	GA	G	395.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;DB;DP=29;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.500;MQ=61.11;MQ0=0;MQRankSum=0.761;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.49;RPA=13,12;RU=A;ReadPosRankSum=0.262;SB=-5.711e+01;SOR=2.400;STR;VQSLOD=0.191;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,21:29:17:433,0,17
1	103548319	rs11164662	C	G	1671.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-8.197e+01;SOR=5.330;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1700,126,0
1	103573547	rs6691654	G	A	937.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5921;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-4.710e+02;SOR=1.143;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:31:72:966,72,0
1	104080169	rs10736038	G	C	566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.925;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.001;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-0.226;SB=-2.940e+02;SOR=0.841;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,24:57:99:595,0,910
1	104084226	rs10881232	A	G	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.714;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=-0.041;SB=-1.000e+02;SOR=1.445;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,14:20:99:453,0,118
1	104086145	rs10785725	A	G	660.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-1.383e+02;SOR=2.531;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:689,51,0
1	104089773	rs7529928	C	G	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.078;SB=-1.765e+00;SOR=1.371;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:162,0,194
1	104115672	TMP_ESP_1_104115672	CTT	C	667.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;DB;DP=35;ExcessHet=3.0103;FS=8.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.08;RPA=3,1;RU=T;ReadPosRankSum=0.484;SB=-8.400e+01;SOR=2.437;STR;VQSLOD=5.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:705,0,952
1	104116565	rs79005152	A	T	702.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.620;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-0.129;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=1.001;SB=-1.590e+02;SOR=1.578;VQSLOD=0.260;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,24:49:99:731,0,695
1	104120455	rs370179572	A	G	690.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.216;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=51.70;MQ0=0;MQRankSum=-1.723;QD=13.54;ReadPosRankSum=-0.473;SB=-3.030e+02;SOR=0.665;VQSLOD=1.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,28:51:99:719,0,636
1	104615875	rs3811505	A	G	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.811;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=5.842;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.16;ReadPosRankSum=-0.211;SB=-2.657e-01;SOR=2.494;VQSLOD=6.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:133,0,359
1	104615959	rs3811506	A	G	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.286;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.84;ReadPosRankSum=1.545;SB=-9.000e+01;SOR=0.527;VQSLOD=9.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,8:20:99:205,0,394
1	104616060	.	G	A	353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.452;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.10;ReadPosRankSum=0.244;SB=-1.990e+02;SOR=0.260;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,12:27:99:382,0,424
1	106435441	.	T	C	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=-1.735;QD=5.17;ReadPosRankSum=-1.058;SB=-5.300e+01;SOR=0.663;VQSLOD=1.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,5:22:99:142,0,451
1	106435691	rs148670426	G	T	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.47;MQ0=0;MQRankSum=-0.748;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-0.175;SB=-6.500e+01;SOR=0.760;VQSLOD=3.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:133,0,172
1	106435731	rs184699337	T	C	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-0.728;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.676;SB=-1.090e+02;SOR=0.252;VQSLOD=3.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:178,0,208
1	106435838	.	G	A	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=-1.561;QD=4.55;ReadPosRankSum=0.000;SB=-4.400e+01;SOR=0.871;VQSLOD=1.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,7:27:99:151,0,486
1	106435855	.	T	C	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-1.650;QD=3.92;ReadPosRankSum=-1.141;SB=-4.500e+01;SOR=0.839;VQSLOD=1.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,7:28:99:138,0,530
1	106435868	.	G	T	83.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=-1.606;POSITIVE_TRAIN_SITE;QD=3.10;ReadPosRankSum=-2.602;SB=-4.100e+01;SOR=0.735;VQSLOD=2.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,7:27:99:112,0,501
1	107599258	rs2232015	A	T	97.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=1.097;SB=0.00;SOR=0.330;VQSLOD=9.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:126,0,235
1	107599918	rs2232016	C	T	1408.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.108;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=3.809;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=1.941;SB=-7.760e+02;SOR=0.686;VQSLOD=7.86;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:43,52:95:99:1437,0,1175
1	107946324	.	CA	C	490.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DP=40;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;RPA=16,15;RU=A;ReadPosRankSum=1.820;SB=-9.000e+01;SOR=1.688;STR;VQSLOD=7.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,31:40:81:528,0,81
1	107979396	rs480392	A	C	1737.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-7.260e+02;SOR=1.609;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1766,126,0
1	108023589	rs4915045	A	C	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=0.070;SB=-2.790e+02;SOR=0.610;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,19:39:99:431,0,501
1	108185301	rs12403266	C	G	790.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-4.340e+02;SOR=1.101;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:819,60,0
1	108185309	rs12410676	G	A	814.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.10;SB=-5.300e+02;SOR=0.906;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:60:843,60,0
1	108292260	rs6672483	A	G	1301.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-2.061e+02;SOR=3.086;VQSLOD=4.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:96:1330,96,0
1	108299775	rs34437461	ATG	A	926.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=1.575;POSITIVE_TRAIN_SITE;QD=16.85;RPA=17,16;RU=TG;ReadPosRankSum=0.909;SB=-3.500e+01;SOR=0.981;STR;VQSLOD=3.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,31:64:99:964,0,788
1	108307642	rs7514025	C	T	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=6.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-0.682;SB=-9.732e-01;SOR=2.833;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:226,0,175
1	108313258	rs6583048	C	T	471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-1.689;SB=-3.140e+02;SOR=0.793;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,21:43:99:500,0,518
1	108315305	rs4611048	C	T	1346.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-4.640e+02;SOR=2.007;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1375,102,0
1	108507541	rs71796067	GGCC	G	209.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DB;DP=11;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.22;RPA=6,5;RU=GCC;ReadPosRankSum=0.135;SB=-1.765e+00;SOR=2.833;STR;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,5:11:99:247,0,121
1	108766133	rs3870737	A	G	530.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.475;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=1.630;POSITIVE_TRAIN_SITE;QD=26.54;ReadPosRankSum=0.000;SB=-1.393e+02;SOR=1.270;VQSLOD=3.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,19:20:17:559,17,0
1	108766424	rs3879436	A	G	1084.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=-1.951e+02;SOR=2.833;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1113,81,0
1	109010455	rs2260492	C	T	47.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.23;MQ0=0;MQRankSum=-2.450;QD=4.78;ReadPosRankSum=-1.026;SB=0.00;SOR=0.412;VQSLOD=1.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:76:76,0,215
1	109158746	rs11307079	CT	C	91.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=0;MQRankSum=-0.253;POSITIVE_TRAIN_SITE;QD=9.17;RPA=19,18;RU=T;ReadPosRankSum=0.967;SB=0.00;SOR=2.303;STR;VQSLOD=2.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:10:24:129,0,24
1	109170746	rs2133198	C	T	1401.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.19;SB=-1.593e+02;SOR=3.967;VQSLOD=3.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1430,108,0
1	109255513	rs3006864	G	T	2029.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SB=-6.790e+02;SOR=1.942;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2058,150,0
1	109261321	.	T	TA	256.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.26;RPA=1,2;RU=A;ReadPosRankSum=0.178;SB=0.00;SOR=0.512;STR;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:294,0,360
1	109261850	rs12070845	G	A	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.052;SB=-7.102e+01;SOR=0.458;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:238,0,212
1	109268573	rs4494160	T	C	2407.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.90;SB=-1.095e+03;SOR=1.131;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2436,178,0
1	109299453	rs1277044	C	G	743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.921;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=-1.169;SB=-1.880e+02;SOR=0.255;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,25:38:99:772,0,387
1	109301250	rs1277042	G	C	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=4.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.56;ReadPosRankSum=-0.479;SB=-5.400e+01;SOR=0.595;VQSLOD=5.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,7:32:99:142,0,693
1	109315211	rs1623641	A	G	88.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.652;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.55;ReadPosRankSum=-2.063;SB=0.00;SOR=0.138;VQSLOD=8.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:117,0,409
1	109321824	rs1759481	G	T	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.584;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-0.848;SB=-6.500e+01;SOR=0.638;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,18:44:99:472,0,765
1	109325028	rs1277051	T	C	980.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.924;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-0.923;SB=-3.860e+02;SOR=1.272;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,35:56:99:1009,0,503
1	109337572	rs1149158	A	C	776.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.163;SB=-3.400e+02;SOR=0.825;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,32:67:99:805,0,963
1	109342716	rs1277239	A	G	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.405;SB=0.00;SOR=1.085;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:209,0,117
1	109350198	rs375887364	GT	G	181.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.852;QD=2.88;RPA=17,16;RU=T;ReadPosRankSum=0.981;SB=-2.801e+01;SOR=0.346;STR;VQSLOD=0.078;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,19:80:99:219,0,800
1	109351501	.	A	G	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.28;ReadPosRankSum=0.346;SB=-5.600e+01;SOR=0.839;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:372,0,484
1	109358958	rs6696787	T	C	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.774;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.463;SB=-1.020e+02;SOR=0.576;VQSLOD=9.54;culprit=SOR	GT:AD:DP:GQ:PL	0/1:18,22:41:99:705,0,513
1	109359591	.	TAAG	T	623.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.99;ReadPosRankSum=0.521;SB=0.00;SOR=0.693;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:661,0,689
1	109363075	rs1333128	T	C	733.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.760;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-1.354;SB=-4.190e+02;SOR=0.616;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,31:53:99:762,0,543
1	109363140	rs1333129	T	C	883.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.956;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.559;SB=-5.550e+02;SOR=0.755;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,34:63:99:912,0,768
1	109363232	rs1333130	T	C	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=1.191;SB=-1.320e+02;SOR=1.545;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,19:41:99:468,0,550
1	109366286	rs7522157	C	T	1184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.468;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.009;SB=-6.750e+02;SOR=0.755;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,46:86:99:1213,0,1097
1	109366370	rs7522260	C	T	792.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-0.793;SB=-2.950e+02;SOR=1.247;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,29:55:99:821,0,666
1	109369797	rs11102506	T	G	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.09;ReadPosRankSum=-0.873;SB=-3.100e+01;SOR=0.569;VQSLOD=9.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:20:99:190,0,431
1	109369915	rs7551421	G	T	394.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=0.343;SB=-2.710e+02;SOR=0.741;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,18:42:99:423,0,576
1	109372876	rs1277222	G	A	759.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-1.653e+02;SOR=2.925;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:788,60,0
1	109372968	rs1277221	T	G	1106.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-4.910e+02;SOR=1.432;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1135,87,0
1	109373446	rs1277220	G	A	445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=0.00;SOR=5.136;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:474,36,0
1	109377157	rs5776950	TA	T	378.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.28;RPA=13,12;RU=A;SB=-1.700e+02;SOR=1.061;STR;VQSLOD=4.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:20:51:416,51,0
1	109391486	rs1149142	G	A	1823.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-8.700e+02;SOR=1.199;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1852,141,0
1	109394766	.	G	T	784.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.991;DP=79;Dels=0.00;ExcessHet=3.0103;FS=4.316;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.683;SB=-4.310e+02;SOR=1.184;VQSLOD=6.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,34:79:99:813,0,1206
1	109395105	rs1277207	C	T	3220.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.513;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.86;ReadPosRankSum=1.167;SB=-1.811e+03;SOR=0.321;VQSLOD=3.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,97:99:99:3249,241,0
1	109457151	rs11102642	C	T	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=-0.720;SB=-3.477e+01;SOR=0.446;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:372,0,205
1	109486196	rs338466	A	G	457.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.856;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=-0.291;SB=-2.890e+02;SOR=0.683;VQSLOD=8.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,21:53:99:486,0,856
1	109486240	rs3215062	TA	T	413.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=1.284;POSITIVE_TRAIN_SITE;QD=9.62;RPA=4,3;RU=A;ReadPosRankSum=0.273;SB=-1.310e+02;SOR=0.719;STR;VQSLOD=3.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,17:47:99:451,0,819
1	109490457	rs839543	T	C	394.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.723;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.157;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=2.135;SB=-2.140e+02;SOR=0.298;VQSLOD=7.02;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,16:36:99:423,0,540
1	109493134	rs66465724	G	GTTA	184.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;RPA=7,8;RU=TTA;ReadPosRankSum=-0.388;SB=0.00;SOR=0.307;STR;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:24:99:222,0,373
1	109524584	rs487901	C	A	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.925;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.48;ReadPosRankSum=1.091;SB=-9.732e-01;SOR=0.892;VQSLOD=8.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:77:77,0,367
1	109529322	.	T	TAA	1626.73	PASS	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;RPA=1,3;RU=A;SB=-5.576e+01;SOR=5.670;STR;VQSLOD=5.65;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,34:36:99:1664,102,0
1	109534940	rs337296	G	A	792.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=2;POSITIVE_TRAIN_SITE;QD=24.77;SB=-2.750e+02;SOR=2.019;VQSLOD=3.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:66:821,66,0
1	109545046	rs184606	C	T	1066.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-1.861e+02;SOR=3.126;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1095,84,0
1	109608870	rs3217403	CACTT	C	1663.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;DB;DP=58;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.96;RPA=2,1;RU=ACTT;ReadPosRankSum=-0.462;SB=-5.130e+02;SOR=0.993;STR;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,29:58:99:1701,0,1336
1	109617777	rs112027893	A	G	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.54;ReadPosRankSum=1.293;SB=-6.000e+01;SOR=0.495;VQSLOD=9.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:20:99:199,0,323
1	109618257	rs673365	C	T	823.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.57;SB=-3.600e+02;SOR=1.839;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:63:852,63,0
1	109635398	rs512671	A	G	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.161;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.757;SB=-1.050e+02;SOR=1.609;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,18:26:99:511,0,177
1	109643380	rs534027	G	C	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.561;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-0.395;SB=0.00;SOR=0.460;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:352,0,512
1	109648503	.	CA	C	55.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=0.000;QD=5.07;RPA=22,21;RU=A;ReadPosRankSum=1.004;SB=0.00;SOR=1.270;STR;VQSLOD=7.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,7:12:68:93,0,68
1	109648794	rs17641032	A	G	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.977;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.988;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=0.042;SB=-1.850e+02;SOR=0.193;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:398,0,420
1	109648870	rs533212	C	G	256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.198;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=0.851;SB=0.00;SOR=1.179;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:285,0,166
1	109656038	rs6701236	A	G	53.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=84.1195;MLEAC=1;MLEAF=0.500;MQ=61.82;MQ0=0;MQRankSum=-0.466;QD=3.58;ReadPosRankSum=-1.732;SB=0.00;SOR=0.090;VQSLOD=1.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:15:82:82,0,322
1	109656038	.	AAGAGAGAGAGAGAGAGAGAGAGAG	A	817.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.82;MQ0=0;MQRankSum=1.414;QD=7.30;RPA=26,14;RU=AG;ReadPosRankSum=-0.185;SB=0.00;SOR=0.693;STR;VQSLOD=1.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,7:15:99:855,0,654
1	109656420	rs536176	T	C	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=1.262;SB=-9.732e-01;SOR=2.584;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:186,0,203
1	109656946	rs667524	T	C	1014.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-1.331;SB=-5.620e+02;SOR=0.579;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,37:67:99:1043,0,729
1	109704390	rs643197	C	G	969.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-1.951e+02;SOR=2.985;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:81:998,81,0
1	109704618	rs678238	A	G	1641.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.20;SB=-4.370e+02;SOR=2.208;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1670,123,0
1	109727422	rs12239846	A	G	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.104;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=-1.468;SB=0.00;SOR=1.244;VQSLOD=10.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:350,0,151
1	109727475	rs649531	T	C	1100.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-1.603e+02;SOR=3.477;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:84:1129,84,0
1	109732080	rs603285	C	T	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.606;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.192;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-0.031;SB=-2.801e+01;SOR=1.460;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,10:23:99:316,0,431
1	109734157	rs606066	T	C	1213.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=40.63;SB=-2.850e+02;SOR=2.584;VQSLOD=4.95;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,34:34:90:1242,90,0
1	109734225	rs643785	G	T	1158.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-2.690e+02;SOR=2.303;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1187,90,0
1	109734541	rs645128	C	T	2372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-3.850e+02;SOR=3.321;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2401,184,0
1	109735298	rs658779	T	C	1732.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-9.440e+02;SOR=0.914;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1761,129,0
1	109735416	rs659543	A	C	1507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-9.180e+02;SOR=0.900;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1536,111,0
1	109735504	rs659659	T	C	1068.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-3.660e+02;SOR=2.115;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1097,78,0
1	109737063	rs2359246	C	T	1595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.50;SB=-6.740e+02;SOR=1.781;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1624,117,0
1	109737090	rs2359245	G	A	2039.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-8.000e+02;SOR=1.678;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2068,150,0
1	109737132	rs2359244	T	C	2539.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-1.208e+03;SOR=1.179;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2568,190,0
1	109737172	rs2359243	C	T	2647.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-1.584e+03;SOR=0.839;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2676,199,0
1	109737314	rs2359242	T	C	1264.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-2.800e+02;SOR=2.774;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:93:1293,93,0
1	109737320	rs2359241	G	A	1202.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.48;SB=-1.971e+02;SOR=3.258;VQSLOD=4.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,34:34:90:1231,90,0
1	109740548	rs2296696	G	T	576.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.648;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.232;HaplotypeScore=3.8113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-0.446;SB=-1.920e+02;SOR=1.154;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,20:45:99:605,0,649
1	109742452	rs913178	C	T	763.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=0.00;SOR=6.091;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:792,60,0
1	109742485	rs913179	G	A	1255.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=0.00;SOR=7.054;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1284,99,0
1	109743622	rs3736956	C	T	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=12.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=-0.436;SB=-1.000e+02;SOR=0.722;VQSLOD=5.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,10:29:99:268,0,635
1	109745618	rs1052878	T	C	1820.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-8.160e+02;SOR=1.460;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1849,132,0
1	109771063	rs683182	T	C	1055.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.108;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.187;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-0.424;SB=-4.270e+02;SOR=1.186;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1084,0,1130
1	109773705	rs141018095	ATT	A	387.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=1.664;POSITIVE_TRAIN_SITE;QD=18.47;RPA=15,13;RU=T;ReadPosRankSum=0.584;SB=0.00;SOR=1.828;STR;VQSLOD=3.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:6,15:26:21:425,21,0
1	109778577	rs658092	T	C	803.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.296;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.982;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-0.676;SB=-3.480e+02;SOR=0.551;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,31:70:99:832,0,1123
1	109779556	rs631927	T	A	1803.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-1.065e+03;SOR=0.950;VQSLOD=6.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1832,132,0
1	109779621	.	T	TC	713.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DP=48;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.87;RPA=1,2;RU=C;ReadPosRankSum=-2.134;SB=-3.050e+02;SOR=0.324;STR;VQSLOD=7.60;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:28,20:48:99:751,0,1088
1	109792735	rs377757908	A	ACGC	522.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.25;RPA=5,6;RU=CGC;SB=-5.876e+01;SOR=3.258;STR;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:560,30,0
1	109792911	.	C	T	740.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.917;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.345;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.43;ReadPosRankSum=0.754;SB=-4.260e+02;SOR=0.379;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,31:71:99:769,0,1098
1	109794252	rs454107	T	C	4915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-2.553e+03;SOR=1.193;VQSLOD=4.53;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4944,376,0
1	109795026	rs413380	T	C	5971.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=191;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-3.444e+03;SOR=0.704;VQSLOD=5.02;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,191:191:99:6000,451,0
1	109795608	rs437444	T	C	5818.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-2.767e+03;SOR=1.225;VQSLOD=5.21;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5847,430,0
1	109804646	rs4970833	G	A	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.210;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=-1.508;SB=-3.100e+01;SOR=0.593;VQSLOD=9.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:164,0,355
1	109806442	rs1337248	C	A	1545.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-3.100e+02;SOR=3.033;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1574,120,0
1	109806834	rs6698843	C	T	1197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.554;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.832;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.070;SB=-7.170e+02;SOR=0.877;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,47:82:99:1226,0,761
1	109807099	rs6689614	G	A	841.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-1.540;SB=-3.570e+02;SOR=0.760;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,31:55:99:870,0,569
1	109812726	.	C	T	881.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.333;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.96;ReadPosRankSum=1.912;SB=-4.420e+02;SOR=0.258;VQSLOD=5.95;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,31:52:99:910,0,543
1	109813020	rs3895559	G	A	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-1.248;SB=-4.076e+01;SOR=0.223;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:169,0,149
1	109813510	rs41279716	A	T	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.80;ReadPosRankSum=-0.992;SB=-9.732e-01;SOR=1.371;VQSLOD=8.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:12:92:92,0,222
1	109813719	rs17035665	C	T	478.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.352;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=0.443;SB=-2.660e+02;SOR=0.770;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,23:45:99:507,0,578
1	109813941	.	T	C	1064.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.991;DP=101;Dels=0.00;ExcessHet=3.0103;FS=7.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.54;ReadPosRankSum=-0.874;SB=-5.110e+02;SOR=0.971;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,44:101:99:1093,0,1396
1	109814880	rs4970834	C	T	683.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.908;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=-0.019;SB=-3.240e+02;SOR=0.672;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,29:67:99:712,0,1015
1	109815252	rs611917	A	G	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.39;ReadPosRankSum=0.264;SB=-2.170e+02;SOR=0.646;VQSLOD=8.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,16:51:99:456,0,974
1	109816176	rs441853	A	C	3271.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-1.236e+03;SOR=1.925;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3300,256,0
1	109836842	rs646335	C	G	2986.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-1.613e+03;SOR=1.000;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3015,217,0
1	109838116	rs632514	C	T	585.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.46;SB=-4.176e+01;SOR=4.294;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:614,48,0
1	109838833	rs616899	T	C	1215.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.74;SB=-2.161e+02;SOR=2.964;VQSLOD=3.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1244,90,0
1	109838918	rs629001	C	T	2643.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-1.514e+03;SOR=0.982;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2672,193,0
1	109839063	.	AT	A	70.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.28;RPA=15,14;RU=T;ReadPosRankSum=-0.402;SB=-1.227e+01;SOR=1.075;STR;VQSLOD=6.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,10:39:99:108,0,469
1	109839392	rs604349	A	G	746.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.948;HaplotypeScore=2.7351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.346;SB=-4.210e+02;SOR=0.502;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,32:72:99:775,0,991
1	109839433	rs1278285	A	G	2429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-1.360e+03;SOR=0.914;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2458,178,0
1	109839954	rs603624	G	C	849.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-1.603e+02;SOR=2.833;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:878,66,0
1	109883576	rs66887225	C	CAT	2182.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.72;SB=-5.080e+02;SOR=2.303;VQSLOD=6.18;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,38:39:99:2220,114,0
1	109884775	rs2228604	T	G	1036.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-4.460e+02;SOR=1.609;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1065,78,0
1	109897103	rs11142	A	G	2881.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-1.313e+03;SOR=1.485;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2910,208,0
1	109955010	rs2303875	C	A	419.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=0.00;SOR=4.977;VQSLOD=8.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:448,33,0
1	109958035	rs1465607	T	C	641.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=-1.653e+02;SOR=2.419;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:670,48,0
1	110009434	rs2787015	A	C	1039.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-4.000e+02;SOR=1.751;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1068,78,0
1	110009654	rs138525393	AC	A	1316.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;RPA=6,5;RU=C;SB=-5.570e+02;SOR=1.121;STR;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:39:99:1354,111,0
1	110018148	rs530565	C	T	2345.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-6.330e+02;SOR=2.537;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2374,175,0
1	110029386	rs145836456	C	T	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=-0.441;SB=0.00;SOR=1.981;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:75:313,0,75
1	110086451	rs17575798	G	A	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.539;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.052;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=-0.137;SB=-2.640e+02;SOR=0.892;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,20:56:99:519,0,1053
1	110141421	.	T	C	732.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.013;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.178;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.66;ReadPosRankSum=0.204;SB=-3.220e+02;SOR=0.386;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:761,0,623
1	110148974	rs1799875	C	T	1373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.881;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=2.597;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-0.089;SB=-7.140e+02;SOR=0.474;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,50:104:99:1402,0,1376
1	110153198	rs6658641	G	A	812.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.256;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.926;HaplotypeScore=4.2795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=1.297;SB=-5.300e+02;SOR=0.504;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,32:68:99:841,0,941
1	110155524	rs2304355	T	C	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.905;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.341;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=-0.059;SB=-1.300e+02;SOR=0.944;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,20:44:99:628,0,673
1	110162918	rs28362580	T	C	589.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=4.268;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.164;SB=-2.360e+02;SOR=1.030;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,20:42:99:618,0,579
1	110163076	rs6669802	A	G	887.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-2.530e+02;SOR=2.147;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:916,66,0
1	110163879	rs28362581	G	A	455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.640;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.172;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=0.974;SB=-2.370e+02;SOR=0.922;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,19:42:99:484,0,559
1	110164657	rs12046107	A	G	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.258;SB=0.00;SOR=0.495;VQSLOD=10.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:236,0,293
1	110164963	rs12028540	C	T	734.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.993;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.581;SB=-3.480e+02;SOR=0.958;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,27:61:99:763,0,873
1	110165001	rs12046933	T	A	555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-1.023;SB=-2.860e+02;SOR=0.840;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,23:51:99:584,0,706
1	110168888	rs493972	C	G	1718.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-1.030e+03;SOR=0.767;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1747,126,0
1	110169957	rs524998	A	G	2254.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-9.240e+02;SOR=1.675;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2283,178,0
1	110170896	rs863978	T	C	2650.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-1.257e+03;SOR=1.153;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2679,199,0
1	110171705	rs523786	A	C	2351.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-9.390e+02;SOR=1.734;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2380,175,0
1	110172346	.	T	TG	685.73	PASS	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.32;RPA=5,6;RU=G;SB=-2.311e+02;SOR=1.609;STR;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:723,57,0
1	110200360	rs560018	T	C	2432.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=1.235;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-0.482;SB=-1.499e+03;SOR=0.576;VQSLOD=7.34;culprit=DP	GT:AD:DP:GQ:PL	0/1:70,94:164:99:2461,0,1816
1	110201580	rs650985	C	T	4837.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.29;SB=-2.898e+03;SOR=0.938;VQSLOD=4.63;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,171:171:99:4866,349,0
1	110201699	rs506008	T	C	1926.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-7.370e+02;SOR=1.436;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1955,147,0
1	110201809	rs562996	G	T	2016.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-1.052e+03;SOR=1.131;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2045,147,0
1	110201812	rs563003	A	G	2055.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-1.138e+03;SOR=1.085;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2084,147,0
1	110210780	rs530021	C	G	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.291;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.25;ReadPosRankSum=0.921;SB=-1.807e+01;SOR=0.527;VQSLOD=9.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:92:92,0,222
1	110230569	rs72989301	A	G	655.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-1.463e+02;SOR=2.531;VQSLOD=4.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:684,51,0
1	110232087	rs4147566	C	T	446.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-4.176e+01;SOR=3.767;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:475,36,0
1	110252010	rs1292098	T	C	1231.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-7.260e+02;SOR=0.843;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:90:1260,90,0
1	110252091	rs35677255	G	A	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.697;HaplotypeScore=12.1682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.70;ReadPosRankSum=0.092;SB=-5.800e+01;SOR=1.781;VQSLOD=6.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,11:35:99:324,0,479
1	110255174	rs929166	T	G	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=-0.243;SB=-1.205e+02;SOR=0.086;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:251,0,119
1	110279701	rs7483	C	T	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.501;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.021;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.80;ReadPosRankSum=0.445;SB=-2.103e+01;SOR=1.371;VQSLOD=7.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,8:26:99:205,0,583
1	110279821	rs1537234	C	A	513.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.182;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=1.647;SB=-3.560e+02;SOR=0.740;VQSLOD=6.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,24:61:99:542,0,988
1	110279914	rs1571858	C	T	546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.073;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=-0.414;SB=-2.600e+02;SOR=0.862;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,21:57:99:575,0,1053
1	110280252	rs36120609	ATCC	A	1808.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;DB;DP=67;ExcessHet=3.0103;FS=6.905;MLEAC=1;MLEAF=0.500;MQ=60.48;MQ0=0;MQRankSum=1.672;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=-0.087;SB=-5.840e+02;SOR=1.609;VQSLOD=0.056;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,34:67:99:1846,0,1722
1	110281941	rs10735234	G	A	2117.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-8.550e+02;SOR=1.716;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2146,157,0
1	110282972	rs1332018	G	T	2948.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-1.499e+03;SOR=1.167;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2977,223,0
1	110292856	rs15864	G	C	277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-1.089;SB=-9.732e-01;SOR=2.303;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:306,0,394
1	110292938	rs148530481	CG	C	725.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DB;DP=51;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.51;RPA=4,3;RU=G;ReadPosRankSum=-1.061;SB=-3.120e+02;SOR=0.375;STR;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,23:51:99:763,0,941
1	110294483	rs6674722	A	G	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.405;SB=-7.000e+01;SOR=0.223;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:163,0,129
1	110295264	rs57530127	T	C	1277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=2.013;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-1.007;SB=-5.900e+02;SOR=1.059;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,46:75:99:1306,0,706
1	110295772	rs1887547	T	C	2992.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-1.761e+03;SOR=0.693;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3021,229,0
1	110295890	rs1887548	C	G	2277.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.01;SB=-9.420e+02;SOR=1.576;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2306,166,0
1	110296017	rs6673976	C	T	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.531;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=-0.235;SB=0.00;SOR=1.022;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:238,0,139
1	110299550	rs2094469	A	G	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.049;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.717;SB=-6.200e+01;SOR=0.859;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,15:38:99:430,0,687
1	110300441	rs3818562	G	A	468.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.184;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.19;ReadPosRankSum=-0.010;SB=-2.790e+02;SOR=0.583;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,21:51:99:497,0,893
1	110300504	rs10776700	A	G	1646.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-7.950e+02;SOR=1.244;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1675,120,0
1	110301766	rs373516452	AGTGT	A	558.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=0.000;QD=27.91;RPA=19,17;RU=GT;ReadPosRankSum=-0.522;SB=-1.210e+02;SOR=0.368;STR;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:18:10:595,0,10
1	110456866	rs2297706	C	A	643.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.434;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.321;SB=-3.250e+02;SOR=0.824;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,23:50:99:672,0,736
1	110459730	rs3093044	G	A	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=2.168;SB=0.00;SOR=1.112;VQSLOD=9.29;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:230,0,208
1	110459773	rs333967	C	T	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.728;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=0.914;SB=0.00;SOR=0.368;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:277,0,502
1	110466466	rs1058885	T	C	5510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-2.872e+03;SOR=0.905;VQSLOD=5.26;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,164:165:99:5539,430,0
1	110466555	rs2229165	G	A	1630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.149;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-1.014;SB=-9.120e+02;SOR=0.767;VQSLOD=7.38;culprit=DP	GT:AD:DP:GQ:PL	0/1:99,65:164:99:1659,0,3117
1	110466709	rs333971	T	C	4675.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-2.176e+03;SOR=1.473;VQSLOD=4.62;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4704,343,0
1	110466810	rs2229166	C	A	698.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.143;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.534;SB=-1.230e+02;SOR=0.693;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,25:50:99:727,0,703
1	110467745	rs333972	A	G	1491.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-5.320e+02;SOR=1.981;VQSLOD=3.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1520,108,0
1	110551590	.	T	TA	109.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.10;RPA=11,12;RU=A;ReadPosRankSum=1.270;SB=-2.103e+01;SOR=0.743;STR;VQSLOD=7.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:19:99:147,0,222
1	110558276	rs67481951	A	AC	1979.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-4.340e+02;SOR=2.584;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:2017,129,0
1	110580693	.	AATAT	A	385.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=1.739;POSITIVE_TRAIN_SITE;QD=20.66;RPA=21,19;RU=AT;ReadPosRankSum=-0.213;SB=0.00;SOR=1.765;STR;VQSLOD=3.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,10:23:91:423,0,91
1	110580706	.	A	G	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.8973;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.629;QD=5.81;ReadPosRankSum=0.847;SB=-1.766e+00;SOR=1.609;VQSLOD=1.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,8:17:99:127,0,240
1	110580708	rs200874434	A	G	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.8973;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.956;QD=7.87;ReadPosRankSum=1.073;SB=-1.766e+00;SOR=1.270;VQSLOD=0.654;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:99:162,0,275
1	110581780	rs1834	T	G	5781.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-3.308e+03;SOR=0.803;VQSLOD=5.52;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5810,421,0
1	110587924	rs7545124	G	A	372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-4.076e+01;SOR=3.442;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:401,30,0
1	110592048	.	CT	C	94.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;DP=27;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=0.000;QD=4.51;RPA=19,18;RU=T;ReadPosRankSum=1.234;SB=-2.801e+01;SOR=0.307;STR;VQSLOD=4.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,10:27:99:132,0,184
1	110603286	rs139173949	A	AGGTGCTTCCTCCGTGGTGTCCAGGCAGG	5307.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.59;SB=0.00;SOR=5.892;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:19:54:5345,54,0
1	110603891	rs369122509	C	T	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.48;ReadPosRankSum=1.402;SB=0.00;SOR=0.473;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:189,0,287
1	110709719	rs7527375	T	C	899.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.737;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=7.729;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.871;SB=-3.370e+02;SOR=1.477;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,30:54:99:928,0,604
1	110709720	rs12737742	G	A	877.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.396;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=7.729;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=0.932;SB=-3.160e+02;SOR=1.477;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,30:54:99:906,0,629
1	110716511	rs12747833	C	T	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-0.303;SB=-3.001e+01;SOR=1.179;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:186,0,101
1	110716835	rs371530590	AC	A	322.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.992;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.09;ReadPosRankSum=0.447;SB=-1.090e+02;SOR=0.892;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,10:32:99:360,0,958
1	110719659	.	T	A	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.263;SB=-6.300e+01;SOR=0.941;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:138,0,139
1	110735037	rs2603583	T	G	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.967;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-0.317;SB=-1.390e+02;SOR=0.207;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:474,0,497
1	110738296	rs2784140	G	A	1690.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.826;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=1.459;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.927;SB=-1.169e+03;SOR=0.536;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,69:122:99:1719,0,1322
1	110740273	rs2603581	G	T	483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.999;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.958;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.861;SB=-2.330e+02;SOR=1.292;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:512,0,453
1	110740406	rs2761443	C	T	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.815;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.08;ReadPosRankSum=-0.331;SB=-2.801e+01;SOR=0.412;VQSLOD=8.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,5:21:99:114,0,450
1	110740688	rs2761445	C	T	433.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.175;SB=-1.030e+02;SOR=0.446;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:462,0,441
1	110765535	rs611587	C	G	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.798;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-0.583;SB=-1.765e+00;SOR=1.287;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:483,0,694
1	110882444	rs814771	A	G	899.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-4.720e+02;SOR=0.770;VQSLOD=4.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:928,69,0
1	110883569	rs3738752	A	T	3283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.672;DB;DP=246;Dels=0.00;ExcessHet=3.0103;FS=0.465;HaplotypeScore=5.5487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-0.506;SB=-1.913e+03;SOR=0.633;VQSLOD=4.18;culprit=DP	GT:AD:DP:GQ:PL	0/1:125,121:246:99:3312,0,3485
1	110919497	rs77842866	G	A	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=0.207;SB=0.00;SOR=0.836;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:241,0,173
1	110919903	rs2279722	T	C	266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=0.091;SB=0.00;SOR=1.981;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:84:295,0,84
1	110924353	rs3738750	G	A	1008.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-0.213;SB=-6.760e+02;SOR=0.606;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1037,0,1023
1	110946294	rs12135220	G	A	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-1.030;SB=0.00;SOR=0.446;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:154,0,214
1	110949720	rs6671673	C	T	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.909;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.10;ReadPosRankSum=0.126;SB=-9.300e+01;SOR=0.527;VQSLOD=8.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,12:38:99:336,0,753
1	110950439	rs6674775	C	T	1441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.833;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=2.401;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-0.104;SB=-5.390e+02;SOR=0.944;VQSLOD=8.02;culprit=DP	GT:AD:DP:GQ:PL	0/1:73,49:122:99:1470,0,2052
1	110993739	rs3806451	C	A	1082.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.889;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=1.499;SB=-1.050e+02;SOR=0.468;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,36:70:99:1111,0,1120
1	110996325	rs3795828	G	A	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.233;SB=0.00;SOR=0.446;VQSLOD=10.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:151,0,241
1	110998766	rs7551116	T	A	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=0.852;SB=-1.765e+00;SOR=1.179;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:159,0,252
1	110998854	rs7514102	G	A	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.152;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.403;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.921;SB=-1.670e+02;SOR=1.119;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:519,0,487
1	111059812	rs368922210	C	CGA	722.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DB;DP=44;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.21;RPA=9,10;RU=GA;ReadPosRankSum=1.512;SB=-7.300e+01;SOR=1.329;STR;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,20:44:99:760,0,741
1	111059825	rs3768457	G	A	600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.779;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-1.199;SB=-1.270e+02;SOR=0.770;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,23:54:99:629,0,962
1	111060669	rs1281175	T	C	4541.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-2.086e+03;SOR=1.161;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4570,331,0
1	111061011	rs3748731	C	A	899.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.818;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=9.995;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=0.856;SB=-5.420e+02;SOR=0.129;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,33:58:99:928,0,726
1	111061062	rs1281174	T	C	1637.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.12;SB=-9.340e+02;SOR=0.776;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1666,120,0
1	111136611	rs17026168	G	A	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-0.148;SB=-9.600e+01;SOR=0.818;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:27:99:329,0,438
1	111144526	rs4839071	T	G	919.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-1.901e+02;SOR=2.753;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:948,69,0
1	111144661	rs12407942	A	G	1031.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.473;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=7.337;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-0.554;SB=-2.710e+02;SOR=1.496;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,42:101:99:1060,0,1610
1	111144955	rs6701118	C	T	190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=-0.542;SB=0.00;SOR=1.270;VQSLOD=10.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:219,0,132
1	111441858	rs12030938	G	A	2009.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.221;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=1.367;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=1.124;SB=-9.420e+02;SOR=0.570;VQSLOD=7.58;culprit=DP	GT:AD:DP:GQ:PL	0/1:69,71:140:99:2038,0,1910
1	111494194	rs2232041	C	T	1223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.010;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.081;SB=-6.800e+02;SOR=0.802;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:68,48:116:99:1252,0,1919
1	111661413	rs325916	T	C	652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.444;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=3.989;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.456;SB=-2.700e+02;SOR=1.303;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:681,0,641
1	111726026	rs2243393	G	A	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.116;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.494;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=1.695;SB=-2.501e+01;SOR=1.845;VQSLOD=6.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,12:28:99:345,0,468
1	111726213	rs694180	A	G	1473.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-5.310e+02;SOR=1.981;VQSLOD=6.71;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1502,111,0
1	111726303	rs2275121	A	G	375.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.229;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.84;ReadPosRankSum=2.419;SB=0.00;SOR=2.303;VQSLOD=7.43;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:3,11:14:66:404,0,66
1	111730901	rs608881	C	T	786.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=2.988;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=0.719;SB=-4.380e+02;SOR=0.427;VQSLOD=7.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,39:81:99:815,0,1207
1	111731158	rs2297703	A	G	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.137;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.449;SB=-4.276e+01;SOR=0.155;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:278,0,343
1	111737183	rs660173	C	T	1382.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.92;SB=-4.680e+02;SOR=1.900;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1411,105,0
1	111737398	rs9970286	G	A	640.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.154;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.988;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=-1.548;SB=-1.040e+02;SOR=0.368;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,22:37:99:669,0,469
1	111739771	rs63467362	G	GCAGGACAAA	5557.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;DB;DP=106;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.462;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=-0.998;SB=-2.671e+03;SOR=0.781;VQSLOD=0.186;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,51:106:99:5595,0,5942
1	111742714	rs638825	A	C	366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-7.497e+01;SOR=2.670;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:395,30,0
1	111742761	rs639210	T	C	507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-7.497e+01;SOR=3.126;VQSLOD=7.11;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:39:536,39,0
1	111742838	rs639306	G	C	1270.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-3.670e+02;SOR=2.179;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1299,96,0
1	111742841	rs12756391	A	G	561.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-0.338;SB=-2.040e+02;SOR=0.511;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,21:38:99:590,0,565
1	111770423	rs755467	T	G	3546.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-2.260e+03;SOR=0.728;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3575,256,0
1	111773568	rs2255089	G	C	1197.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-7.300e+02;SOR=0.850;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1226,87,0
1	111773830	rs2147789	A	T	1962.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-1.150e+03;SOR=0.826;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1991,147,0
1	111778187	rs2251715	A	G	2150.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-8.590e+02;SOR=1.576;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2179,160,0
1	111778241	rs2764544	C	T	2733.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-1.537e+03;SOR=0.740;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:88:99:2762,205,0
1	111778824	rs2251608	T	C	746.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-1.205e+02;SOR=2.925;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:775,63,0
1	111783982	rs13721	C	A	2923.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-1.797e+03;SOR=0.957;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2952,214,0
1	111783996	rs2494007	A	G	3119.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-1.971e+03;SOR=0.833;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3148,223,0
1	111784138	rs942694	T	C	1759.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-7.130e+02;SOR=1.651;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1788,138,0
1	111784148	rs2764551	T	G	1843.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-6.970e+02;SOR=1.654;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1872,135,0
1	111784158	rs942693	T	C	1549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-6.230e+02;SOR=1.562;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1578,123,0
1	111784227	rs2182114	C	T	711.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-2.740e+02;SOR=1.708;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:740,57,0
1	111785550	rs3135451	C	T	353.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=0.00;SOR=5.136;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:30:382,30,0
1	111785930	rs1056825	T	C	1187.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.62;SB=-7.050e+02;SOR=1.005;VQSLOD=5.06;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,43:43:90:1216,90,0
1	111786012	rs1056831	T	A	536.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.84;SB=-2.361e+02;SOR=1.721;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:21:42:565,42,0
1	111825883	rs4406629	T	C	1242.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-2.740e+02;SOR=2.712;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1271,93,0
1	111826007	rs58982671	C	T	791.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.804;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.26;MQ0=0;MQRankSum=0.817;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-0.069;SB=-5.270e+02;SOR=0.631;VQSLOD=2.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,32:63:99:820,0,761
1	111833270	rs4442363	C	T	313.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=0.00;SOR=4.804;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:342,27,0
1	111833441	rs11102235	G	A	1882.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-1.109e+03;SOR=0.899;VQSLOD=4.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1911,138,0
1	111833488	rs374234404	C	CCT	2069.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.85;RPA=1,2;RU=CT;SB=-7.890e+02;SOR=1.292;STR;VQSLOD=4.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:44:99:2107,120,0
1	111833517	rs12026825	G	A	1274.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-3.930e+02;SOR=2.073;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:96:1303,96,0
1	111853060	.	A	AGCCAATCTAG	1603.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DP=35;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.205;SB=-6.260e+02;SOR=0.960;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,13:35:99:1641,0,2564
1	111854005	rs4839120	C	G	465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.33;SB=0.00;SOR=5.136;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:494,36,0
1	111854044	rs11102243	C	T	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=-0.032;SB=-3.000e+01;SOR=0.551;VQSLOD=9.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:23:99:226,0,461
1	111854076	rs11102244	G	T	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.917;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=-1.623;SB=-1.660e+02;SOR=0.160;VQSLOD=6.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,12:31:99:235,0,553
1	111854096	rs4839121	A	G	994.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.42;SB=-4.050e+02;SOR=1.885;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:75:1023,75,0
1	111854207	rs4839122	T	C	805.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.624;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.524;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-0.642;SB=-4.090e+02;SOR=1.214;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,31:61:99:834,0,824
1	111854889	rs41282492	A	G	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.954;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.326;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-1.132;SB=-1.320e+02;SOR=0.998;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,21:49:99:589,0,775
1	111854895	rs41282494	G	A	602.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.991;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.819;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=0.196;SB=-1.210e+02;SOR=1.238;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,21:53:99:631,0,784
1	111854938	rs41282496	G	T	1072.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.465;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=2.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=-0.304;SB=-2.850e+02;SOR=1.038;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,35:72:99:1101,0,1025
1	111855149	rs74108971	C	T	890.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.073;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-0.310;SB=-2.860e+02;SOR=0.801;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,35:80:99:919,0,1177
1	111857087	rs2786151	C	T	1209.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-1.543e+02;SOR=3.737;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:93:1238,93,0
1	111857154	rs2786152	T	C	3103.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-1.101e+03;SOR=1.981;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3132,226,0
1	111858291	rs2786155	T	C	559.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.514;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.996;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-1.270;SB=-1.080e+02;SOR=0.368;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:588,0,402
1	111858444	rs2786156	C	T	3502.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=61.61;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-2.026e+03;SOR=0.822;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3531,256,0
1	111858499	rs6661725	A	G	2915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=63.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-1.278e+03;SOR=1.280;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2944,217,0
1	111858526	.	A	C	1401.77	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=69.74;MQ0=0;QD=33.26;SB=-2.890e+02;SOR=2.712;VQSLOD=5.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1430,105,0
1	111858526	rs67959246	AAATATAAGAATAAGACACTATCCTTGGCTT	A	11207.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=69.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-2.245e+03;SOR=2.649;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:36:99:11245,105,0
1	111858589	rs2786157	G	T	956.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.152;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.614;HaplotypeScore=2.2611;MLEAC=1;MLEAF=0.500;MQ=66.54;MQ0=0;MQRankSum=0.932;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=0.959;SB=-9.900e+01;SOR=1.508;VQSLOD=0.814;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,32:55:99:985,0,613
1	111858603	rs2786158	G	T	952.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.281;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.752;HaplotypeScore=2.5494;MLEAC=1;MLEAF=0.500;MQ=66.26;MQ0=0;MQRankSum=1.266;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=-0.577;SB=-9.200e+01;SOR=1.280;VQSLOD=0.266;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,31:51:99:981,0,570
1	111861508	rs11102248	T	C	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.753;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.519;SB=0.00;SOR=0.404;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:28:99:372,0,551
1	111861714	rs2786161	T	A	1543.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-4.300e+02;SOR=2.448;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1572,117,0
1	111861822	rs17027410	G	A	942.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.416;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=2.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-0.167;SB=-5.440e+02;SOR=0.940;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,39:90:99:971,0,1431
1	111861841	rs2275253	A	G	2761.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-1.738e+03;SOR=0.829;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2790,208,0
1	111861974	rs2275254	T	C	2422.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-1.455e+03;SOR=0.774;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2451,178,0
1	111862078	rs12094378	C	T	740.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.389;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-0.576;SB=-3.050e+02;SOR=0.461;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,30:59:99:769,0,777
1	111862952	rs2256721	T	G	2989.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-1.229e+03;SOR=1.609;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3018,220,0
1	111866621	rs17027443	A	G	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.180;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=0.164;SB=-2.901e+01;SOR=2.215;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:353,0,210
1	111866640	rs6690266	C	A	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.60;ReadPosRankSum=2.004;SB=-4.176e+01;SOR=0.074;VQSLOD=6.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:127,0,247
1	111889457	rs11590153	A	T	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.209;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=-0.051;SB=-2.260e+02;SOR=0.503;VQSLOD=7.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,17:42:99:388,0,707
1	111890240	.	C	CTT	435.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=0.000;QD=12.82;RPA=3,5;RU=T;ReadPosRankSum=0.989;SB=-7.521e+01;SOR=1.022;STR;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,20:44:99:473,0,118
1	111891192	rs2184884	C	A	447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.818;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=-0.710;SB=-2.850e+02;SOR=0.793;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:476,0,698
1	111892905	rs3820443	T	C	427.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-7.897e+01;SOR=2.833;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:456,33,0
1	111892909	rs56255516	G	A	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-0.084;SB=-4.076e+01;SOR=0.399;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:210,0,135
1	111893708	rs10158004	G	A	454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-4.276e+01;SOR=3.767;VQSLOD=5.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:483,36,0
1	111893788	.	GTTT	G	550.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;DP=29;ExcessHet=3.0103;FS=5.444;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=2.502;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.39;RPA=20,17;RU=T;ReadPosRankSum=0.307;SB=-1.900e+02;SOR=0.119;STR;VQSLOD=0.478;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,23:29:3:586,0,3
1	111893958	rs1668	A	G	1323.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-7.290e+02;SOR=1.105;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:96:1352,96,0
1	111957097	rs7825	C	G	460.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.270;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.736;SB=-1.750e+02;SOR=0.293;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,18:41:99:489,0,714
1	111957688	rs3767607	T	C	2353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=4.597;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-0.481;SB=-1.265e+03;SOR=0.693;VQSLOD=7.57;culprit=DP	GT:AD:DP:GQ:PL	0/1:75,88:163:99:2382,0,1918
1	111957693	rs2485319	A	G	2388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=1.234;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-0.914;SB=-1.345e+03;SOR=0.591;VQSLOD=7.37;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,88:160:99:2417,0,1793
1	111958847	rs76261890	A	T	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-2.017;SB=0.00;SOR=0.693;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:173,0,170
1	111958885	rs10489791	C	A	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.497;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.336;SB=-2.103e+01;SOR=2.419;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:238,0,176
1	111962209	rs1419092	G	A	1166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.451;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-0.273;SB=-5.580e+02;SOR=0.454;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,46:92:99:1195,0,1261
1	111962256	rs17027633	G	T	1379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.074;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=3.617;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-0.459;SB=-8.780e+02;SOR=0.425;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,54:104:99:1408,0,1361
1	111964262	rs2275794	G	A	1522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.708;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=1.157;SB=-8.060e+02;SOR=0.653;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,57:113:99:1551,0,1452
1	111969294	rs1264892	A	G	794.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.689;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.927;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.147;SB=-3.930e+02;SOR=0.942;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,28:71:99:823,0,1184
1	111969307	rs2275795	G	C	615.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.977;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=0.870;SB=-3.130e+02;SOR=0.997;VQSLOD=7.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,28:74:99:644,0,1213
1	111969719	rs1264894	A	G	1104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.797;HaplotypeScore=2.4167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-0.021;SB=-5.750e+02;SOR=0.858;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,41:89:99:1133,0,1227
1	111970431	rs71652911	TAC	T	135.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;MQRankSum=0.157;POSITIVE_TRAIN_SITE;QD=16.99;RPA=26,25;RU=AC;ReadPosRankSum=1.534;SB=-4.997e+01;SOR=0.693;STR;VQSLOD=3.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,7:21:5:172,5,0
1	111985229	rs1264902	G	T	736.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.608;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=0.385;SB=-2.240e+02;SOR=0.638;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,28:69:99:765,0,1090
1	111991768	rs11548427	G	A	385.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=1.854;SB=-1.410e+02;SOR=0.804;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:414,0,359
1	111991845	rs1270853	C	A	942.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.342;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-1.767;SB=-3.920e+02;SOR=0.393;VQSLOD=8.09;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,36:67:99:971,0,865
1	111992019	rs2298187	T	A	1731.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=1.491;SB=-9.660e+02;SOR=0.732;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:68,65:133:99:1760,0,1820
1	112020238	rs2211494	A	C	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.603e+02;SOR=1.085;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
1	112020453	rs17027773	C	G	683.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=1.676;SB=-3.650e+02;SOR=0.756;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:55:99:712,0,734
1	112026152	rs7737	C	T	537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=-0.174;SB=-1.280e+02;SOR=1.270;VQSLOD=10.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,19:26:99:566,0,149
1	112026676	rs17027796	C	T	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=0.091;SB=0.00;SOR=0.330;VQSLOD=9.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:127,0,223
1	112028577	rs2275796	A	T	414.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.204;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=-1.198;SB=-3.976e+01;SOR=0.399;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:24:99:443,0,304
1	112029193	rs2252739	A	G	1680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.9353;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-7.350e+02;SOR=1.524;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:60:99:1709,138,0
1	112029325	rs2800906	A	G	2970.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-1.598e+03;SOR=1.132;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2999,214,0
1	112032126	rs58712964	T	C	266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.964;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.94;ReadPosRankSum=-1.356;SB=-1.620e+02;SOR=0.784;VQSLOD=7.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,13:54:99:295,0,1112
1	112032131	rs61002431	T	G	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.74;ReadPosRankSum=-1.229;SB=-1.410e+02;SOR=0.836;VQSLOD=6.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,13:55:99:289,0,1133
1	112032205	rs7544118	C	T	199.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.908;HaplotypeScore=3.2489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.70;ReadPosRankSum=1.156;SB=-6.000e+01;SOR=1.675;VQSLOD=6.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,12:54:99:228,0,1293
1	112032347	rs2789539	G	A	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.739;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=9.423;HaplotypeScore=2.6665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=-3.197;SB=-1.860e+02;SOR=2.064;VQSLOD=5.96;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,24:34:99:690,0,186
1	112033285	rs2275797	G	C	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.423;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-1.372;SB=-1.670e+02;SOR=1.230;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,20:37:99:545,0,499
1	112033456	.	G	GA	439.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;DP=50;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;RPA=3,4;RU=A;ReadPosRankSum=0.035;SB=-1.430e+02;SOR=0.483;STR;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,17:50:99:477,0,830
1	112033480	rs2275798	T	C	642.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.554;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.166;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=-1.381;SB=-1.660e+02;SOR=1.329;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,24:40:99:671,0,401
1	112033515	rs2252198	T	C	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.796;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=0.780;SB=-6.900e+01;SOR=0.317;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:353,0,379
1	112033519	rs2252197	A	G	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.045;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.920;SB=-3.101e+01;SOR=0.693;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:353,0,348
1	112042383	rs923	G	A	1079.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-4.376e+01;SOR=5.353;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1108,87,0
1	112042632	rs2229155	A	G	3748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-1.997e+03;SOR=1.028;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3777,277,0
1	112106342	rs1591711	C	T	596.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-0.664;SB=-2.430e+02;SOR=0.919;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,24:39:99:625,0,397
1	112106444	rs1591712	G	A	1863.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-9.040e+02;SOR=1.143;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1892,141,0
1	112191408	rs17665274	T	C	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.969;SB=-1.710e+02;SOR=0.551;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:296,0,273
1	112234084	rs10489469	G	T	1125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.745;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.354;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-1.369;SB=-6.110e+02;SOR=1.172;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,46:81:99:1154,0,951
1	112237915	rs7525307	A	T	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.115;SB=-3.976e+01;SOR=0.346;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:282,0,186
1	112251983	rs3738300	C	G	430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.545;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.438;SB=-7.000e+01;SOR=0.859;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:459,0,380
1	112269872	rs197434	G	A	2186.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-1.150e+03;SOR=1.054;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2215,166,0
1	112304729	.	C	T	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.46;ReadPosRankSum=0.849;SB=0.00;SOR=0.804;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:308,0,257
1	112305406	.	TA	T	420.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;DP=66;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.01;RPA=16,15;RU=A;ReadPosRankSum=0.474;SB=-1.810e+02;SOR=1.008;STR;VQSLOD=5.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,29:66:99:458,0,624
1	112533978	rs36015121	TGAA	T	1277.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.59;SB=0.00;SOR=6.184;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:22:63:1315,63,0
1	112539061	rs2366125	A	G	2578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.65;SB=-1.509e+03;SOR=0.832;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2607,193,0
1	112991698	rs2256883	T	C	761.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.531;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=10.939;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-0.473;SB=-3.030e+02;SOR=1.353;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,29:62:99:790,0,865
1	112991862	rs3818729	G	T	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=6.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=0.725;SB=-2.130e+02;SOR=0.144;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:380,0,532
1	112999227	rs1175641	G	A	1591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-8.200e+02;SOR=0.952;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1620,120,0
1	113059220	rs351372	T	A	470.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=0.00;SOR=5.421;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:499,39,0
1	113113167	.	GTA	G	162.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;RPA=13,12;RU=TA;ReadPosRankSum=0.000;SB=0.00;SOR=2.093;STR;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,7:10:39:200,0,39
1	113202417	rs2932536	G	A	1285.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-5.550e+02;SOR=1.387;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1314,99,0
1	113209766	.	C	T	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.533;DP=31;Dels=0.00;ExcessHet=3.0103;FS=12.366;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-0.501;SB=-1.871e+02;SOR=0.027;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,18:31:99:463,0,399
1	113232003	.	A	C	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DP=16;Dels=0.00;ExcessHet=3.0103;FS=15.911;HaplotypeScore=13.6147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.67;ReadPosRankSum=0.719;SB=-1.352e-01;SOR=4.400;VQSLOD=2.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:151,0,193
1	113232008	.	A	C	34.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;DP=17;Dels=0.00;ExcessHet=3.0103;FS=6.117;HaplotypeScore=13.6147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.158;SB=-1.352e-01;SOR=3.056;VQSLOD=4.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:63:63,0,267
1	113234456	rs2932532	G	A	2261.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.319e+03;SOR=0.840;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2290,169,0
1	113239478	rs2999158	T	C	1127.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-6.460e+02;SOR=1.040;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1156,87,0
1	113242488	rs3013431	C	T	2256.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-8.190e+02;SOR=1.828;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2285,172,0
1	113244433	rs2279500	T	C	1107.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-3.710e+02;SOR=1.911;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1136,84,0
1	113246229	rs937053	T	A	1077.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8626;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.41;SB=-1.423e+02;SOR=2.985;VQSLOD=4.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:87:1106,87,0
1	113248365	rs954679	A	G	844.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-1.245e+02;SOR=3.528;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:873,63,0
1	113252614	rs41310100	C	A	1437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-2.311e+02;SOR=3.109;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1466,108,0
1	113254267	rs7522283	G	C	256.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.68;SB=-1.603e+02;SOR=1.085;VQSLOD=4.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:285,21,0
1	113254484	rs4839258	A	G	594.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-1.603e+02;SOR=2.179;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:623,45,0
1	113255389	rs10857971	C	T	375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=-8.097e+01;SOR=2.494;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:404,30,0
1	113256382	rs45492096	A	C	661.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=0.00;SOR=5.994;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:690,57,0
1	113460676	rs199817200	CAATAAATA	C	654.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.876;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;MQRankSum=0.349;POSITIVE_TRAIN_SITE;QD=22.32;RPA=12,10;RU=AATA;ReadPosRankSum=-0.980;SB=0.00;SOR=1.802;STR;VQSLOD=3.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,8:24:17:692,17,0
1	113616382	.	G	GA	807.73	PASS	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;RPA=2,3;RU=A;SB=-8.097e+01;SOR=3.912;STR;VQSLOD=5.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:66:845,66,0
1	113636924	rs1216802	T	C	986.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=0.00;SOR=6.593;VQSLOD=4.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1015,78,0
1	113657092	rs1216793	A	C	4689.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.06;ReadPosRankSum=0.161;SB=-2.172e+03;SOR=1.108;VQSLOD=6.73;culprit=DP	GT:AD:DP:GQ:PL	1/1:1,150:151:99:4718,349,0
1	113658887	rs1216791	G	A	3086.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-1.384e+03;SOR=1.265;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3115,232,0
1	113659065	rs10541977	ACT	A	4417.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.14;RPA=2,1;RU=CT;SB=-1.332e+03;SOR=1.872;STR;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:94:99:4455,256,0
1	114137013	rs67122528	C	CAT	501.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;RPA=1,2;RU=AT;SB=0.00;SOR=4.804;STR;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:539,30,0
1	114162619	rs1217193	C	G	460.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=0.00;SOR=5.283;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:489,36,0
1	114165757	rs2636006	A	C	405.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.64;SB=0.00;SOR=4.977;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:434,33,0
1	114196364	rs2359174	T	G	1614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-6.370e+02;SOR=1.747;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1643,117,0
1	114196495	rs2359173	A	G	2912.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-1.774e+03;SOR=0.757;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2941,220,0
1	114201994	rs35373114	CTG	C	607.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.55;RPA=2,1;RU=TG;SB=0.00;SOR=5.283;STR;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:18:39:645,39,0
1	114224782	.	A	AT	314.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;RPA=16,17;RU=T;ReadPosRankSum=-1.165;SB=-9.000e+01;SOR=0.560;STR;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:32:99:352,0,208
1	114240319	rs5777167	T	TA	3375.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;RPA=1,2;RU=A;SB=-1.233e+03;SOR=1.349;STR;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:79:99:3413,229,0
1	114240774	rs143096006	AACACACAC	A	1285.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.44;RPA=18,14;RU=AC;SB=0.00;SOR=5.421;STR;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:1323,42,0
1	114242122	rs3752954	T	C	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-4.176e+01;SOR=3.611;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:410,30,0
1	114242250	rs3752953	C	T	1521.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-6.260e+02;SOR=1.609;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1550,117,0
1	114249382	rs6698586	C	T	1143.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-2.800e+02;SOR=2.649;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1172,87,0
1	114267347	rs1230640	C	T	684.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-3.200e+02;SOR=1.519;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:51:713,51,0
1	114280717	rs2273758	A	C	1046.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-3.950e+02;SOR=1.819;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1075,78,0
1	114309172	rs1935836	C	T	544.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=0.00;SOR=5.549;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:573,45,0
1	114320038	.	C	G	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-0.844;SB=-5.300e+01;SOR=1.022;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:369,0,381
1	114339956	rs67958557	C	CTAAA	1574.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-7.076e+01;SOR=4.977;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1612,72,0
1	114372332	rs57877024	TA	T	1284.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;DB;DP=78;ExcessHet=3.0103;FS=1.629;MLEAC=1;MLEAF=0.500;MQ=60.69;MQ0=0;MQRankSum=0.968;POSITIVE_TRAIN_SITE;QD=18.62;RPA=12,11;RU=A;ReadPosRankSum=0.222;SB=-2.910e+02;SOR=1.340;STR;VQSLOD=0.491;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,59:78:71:1322,0,71
1	114372570	.	C	A	501.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.767;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-0.441;SB=-2.270e+02;SOR=0.796;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,21:46:99:530,0,628
1	114377093	rs1599971	A	G	1911.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.54;SB=-5.740e+02;SOR=2.107;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1940,144,0
1	114377568	rs2476601	A	G	2358.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.184;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3072;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.42;ReadPosRankSum=0.550;SB=-1.504e+03;SOR=0.821;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,81:83:99:2387,139,0
1	114380508	.	G	C	1156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-0.402;SB=-6.360e+02;SOR=0.583;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,44:74:99:1185,0,826
1	114401231	rs1217418	A	G	879.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-2.051e+02;SOR=2.985;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:31:66:908,66,0
1	114401904	rs1217419	T	G	1232.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-1.941e+02;SOR=3.126;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:93:1261,93,0
1	114424601	rs1217381	C	T	1488.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-7.910e+02;SOR=1.112;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1517,111,0
1	114512939	rs3811018	A	T	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.130;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.524;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.35;ReadPosRankSum=-0.198;SB=-5.000e+01;SOR=1.060;VQSLOD=7.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,18:57:99:504,0,1166
1	114634952	rs201895469	CTCTCTCTCTGTG	C	1158.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=0.00;SOR=4.407;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:13:24:1196,24,0
1	114641685	rs2774285	A	G	1756.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-6.190e+02;SOR=1.835;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1785,129,0
1	114679940	rs12132771	C	A	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.117;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.617;SB=0.00;SOR=0.392;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:248,0,434
1	114682356	.	G	A	763.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.461;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.73;ReadPosRankSum=-1.687;SB=-3.950e+02;SOR=0.855;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,27:60:99:792,0,923
1	114940209	.	G	T	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.783;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.8857;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=0.127;QD=7.89;ReadPosRankSum=1.665;SB=-1.765e+00;SOR=0.922;VQSLOD=1.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:20:99:186,0,421
1	114940211	rs58764175	G	GT	157.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;DB;DP=20;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=-1.427;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.89;RPA=16,17;RU=T;ReadPosRankSum=-0.657;SB=-2.114e+00;SOR=2.448;STR;VQSLOD=0.059;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,12:20:94:195,0,94
1	114940632	rs5777192	CA	C	533.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;DB;DP=37;ExcessHet=3.0103;FS=5.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.68;RPA=12,11;RU=A;ReadPosRankSum=0.570;SB=-2.180e+02;SOR=0.148;STR;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,28:37:22:571,0,22
1	114947935	rs1230795	G	A	422.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=0.00;SOR=5.136;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:451,36,0
1	114948281	rs6537825	A	G	5505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-3.271e+03;SOR=0.825;VQSLOD=3.36;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,175:175:99:5534,397,0
1	115006208	rs200284448	T	A	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.664;HaplotypeScore=8.2904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.062;SB=-5.900e+01;SOR=1.421;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:444,0,408
1	115144703	rs28398	A	G	2225.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-1.287e+03;SOR=0.920;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2254,163,0
1	115165472	rs222502	T	A	1334.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.76;SB=0.00;SOR=7.223;VQSLOD=1.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1363,108,0
1	115166350	rs148413143	ATTGT	A	1632.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.44;RPA=2,1;RU=TTGT;SB=-3.277e+01;SOR=5.353;STR;VQSLOD=4.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:38:87:1670,87,0
1	115218413	rs2070986	G	A	2939.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-1.402e+03;SOR=1.167;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2968,220,0
1	115222434	rs761755	G	A	595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=0.00;SOR=5.670;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:624,48,0
1	115238016	rs68036474	CA	C	473.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.621;DB;DP=33;ExcessHet=3.0103;FS=8.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;RPA=15,14;RU=A;ReadPosRankSum=-1.232;SB=-6.000e+01;SOR=3.209;STR;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,28:33:26:511,0,26
1	115256669	rs969273	G	A	738.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-6.897e+01;SOR=4.003;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:60:767,60,0
1	115398044	rs60659641	GC	G	1303.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;RPA=7,6;RU=C;SB=-2.181e+02;SOR=3.145;STR;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1341,114,0
1	115401136	rs360615	G	A	828.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.53;SB=-7.497e+01;SOR=4.091;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:857,66,0
1	115576023	rs10776792	A	G	5465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-3.110e+03;SOR=1.075;VQSLOD=4.45;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,182:182:99:5494,391,0
1	115601615	rs7523818	A	G	1238.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-3.770e+02;SOR=1.981;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1267,90,0
1	115631924	rs4240540	C	T	327.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-7.097e+01;SOR=2.303;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:27:356,27,0
1	115828678	.	G	A	941.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.293;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.44;ReadPosRankSum=-0.628;SB=-3.670e+02;SOR=0.693;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,37:61:99:970,0,603
1	116202712	rs370702053	A	C	75.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.496;SB=0.00;SOR=0.188;VQSLOD=8.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:104,0,369
1	116224925	rs10923176	G	A	238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-0.102;SB=-1.765e+00;SOR=1.802;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:267,0,221
1	116224940	rs10754330	C	A	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.542;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=0.559;SB=-3.400e+01;SOR=0.693;VQSLOD=10.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:326,0,351
1	116225180	rs10923177	A	C	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.638;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=0.308;SB=-3.501e+01;SOR=1.739;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,13:19:99:441,0,172
1	116226459	rs12144356	C	T	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=-0.893;SB=0.00;SOR=1.609;VQSLOD=10.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:14:99:307,0,126
1	116228220	rs12145661	C	T	350.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-1.183;SB=-9.600e+01;SOR=0.512;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:379,0,313
1	116243877	rs7413162	G	A	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.002;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=-1.831;SB=-5.150e-01;SOR=2.093;VQSLOD=6.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:221,0,376
1	116245655	rs12402684	G	C	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=0.302;SB=-2.880e+02;SOR=0.830;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,21:34:99:552,0,271
1	116260532	rs2997741	A	T	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.355;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=-0.069;SB=-1.480e+02;SOR=1.065;VQSLOD=7.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,18:51:99:480,0,958
1	116260544	rs3811001	C	T	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.539;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=-0.886;SB=-1.180e+02;SOR=1.148;VQSLOD=7.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,17:47:99:451,0,926
1	116260604	rs2997742	G	A	168.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.380;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.63;ReadPosRankSum=-0.117;SB=-2.701e+01;SOR=0.495;VQSLOD=9.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,8:30:99:197,0,709
1	116268178	.	GA	G	405.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=1.519;POSITIVE_TRAIN_SITE;QD=9.22;RPA=23,22;RU=A;ReadPosRankSum=-0.592;SB=-1.870e+02;SOR=0.772;STR;VQSLOD=2.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,33:56:99:359,0,103
1	116268283	rs4475752	C	T	647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.24;MQ0=0;MQRankSum=-0.209;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=0.260;SB=0.00;SOR=1.981;VQSLOD=3.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,19:26:99:676,0,167
1	116283343	rs9428083	A	G	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.238;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=1.242;SB=-1.820e+02;SOR=0.454;VQSLOD=9.65;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,14:28:99:360,0,397
1	116283526	rs7538337	G	A	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.313;SB=-3.300e+01;SOR=0.446;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:196,0,287
1	116287682	rs9428211	T	C	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=1.337;SB=-1.766e+00;SOR=1.402;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:208,0,235
1	116311198	rs4074537	T	C	911.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-1.145e+02;SOR=3.767;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:940,75,0
1	116534852	rs4046190	C	T	1067.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=0.447;SB=-5.920e+02;SOR=0.756;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:65,42:107:99:1096,0,1798
1	116569530	rs2488429	G	C	990.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-4.040e+02;SOR=1.751;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:72:1019,72,0
1	116577981	rs1935828	G	A	974.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-1.205e+02;SOR=3.767;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:1003,75,0
1	116579779	rs17035177	C	T	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=1.468;SB=0.00;SOR=1.061;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:343,0,218
1	116607254	rs1281748	G	T	795.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.02;SB=0.00;SOR=6.184;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:824,63,0
1	116609185	.	G	A	1505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.706;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.76;ReadPosRankSum=1.610;SB=-6.590e+02;SOR=0.577;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,58:118:99:1534,0,1621
1	116609833	rs3748741	G	A	741.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.102;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.575;SB=-3.460e+02;SOR=0.914;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,32:65:99:770,0,900
1	116655492	rs1146356	A	G	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-0.984;SB=-7.100e+01;SOR=0.859;VQSLOD=10.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:199,0,132
1	116663724	rs41275550	C	T	610.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.151;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.219;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-0.846;SB=-3.880e+02;SOR=0.685;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,28:57:99:639,0,698
1	116666569	rs960675	T	A	338.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-1.165e+02;SOR=1.802;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:367,27,0
1	116670774	rs10754431	A	G	2071.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-1.012e+03;SOR=1.418;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2100,154,0
1	116670990	rs113454074	AG	A	480.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.23;RPA=4,3;RU=G;ReadPosRankSum=-0.111;SB=0.00;SOR=1.136;STR;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,15:26:99:518,0,323
1	116675623	rs76861838	T	C	804.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.915;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.286;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.856;SB=-1.820e+02;SOR=0.454;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,28:58:99:833,0,896
1	116675909	rs74884121	A	G	1198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-0.421;SB=-5.080e+02;SOR=0.614;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,45:98:99:1227,0,1457
1	116676035	rs10802159	A	C	988.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.61;SB=-8.097e+01;SOR=4.332;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:1017,75,0
1	116932563	rs850609	T	A	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.559;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=-0.515;SB=-1.765e+00;SOR=2.833;VQSLOD=6.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,13:20:99:465,0,212
1	116948712	rs850610	G	A	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-0.207;SB=-3.677e+01;SOR=0.132;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:174,0,238
1	117078921	rs41275570	A	G	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-1.899;SB=-3.500e+01;SOR=1.402;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:208,0,134
1	117122288	rs647711	G	C	585.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.805;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.0775;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=0.887;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.910;SB=-2.010e+02;SOR=0.612;VQSLOD=3.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,20:48:99:614,0,795
1	117131292	rs201397796	G	A	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.9886;MLEAC=1;MLEAF=0.500;MQ=52.14;MQ0=3;MQRankSum=-0.205;QD=3.51;ReadPosRankSum=0.151;SB=-5.900e+01;SOR=0.551;VQSLOD=1.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,7:29:99:130,0,507
1	117142531	rs631461	G	A	399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.965;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.82;MQ0=1;MQRankSum=1.604;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-0.122;SB=-2.501e+01;SOR=0.941;VQSLOD=3.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,15:42:99:428,0,774
1	117146124	rs584423	T	C	889.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.639;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-1.004;SB=-1.730e+02;SOR=0.859;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,32:65:99:918,0,1001
1	117150488	rs111304243	G	A	47.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.548;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=1;MQRankSum=-4.379;QD=2.17;ReadPosRankSum=-1.301;SB=0.00;SOR=0.074;VQSLOD=0.197;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,5:22:76:76,0,556
1	117151062	rs78660628	C	T	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.188;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.12;MQ0=0;MQRankSum=-3.996;QD=11.72;ReadPosRankSum=-2.640;SB=0.00;SOR=0.412;VQSLOD=0.355;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,9:22:99:286,0,469
1	117151066	rs79155130	G	A	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.56;MQ0=0;MQRankSum=-3.890;QD=10.75;ReadPosRankSum=-2.030;SB=0.00;SOR=0.346;VQSLOD=0.555;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,8:21:99:254,0,434
1	117151085	rs78995719	A	G	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=0;MQRankSum=-3.466;QD=3.55;ReadPosRankSum=0.156;SB=0.00;SOR=0.105;VQSLOD=1.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:78:78,0,407
1	117214318	.	T	TA	349.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=1.002;POSITIVE_TRAIN_SITE;QD=11.66;RPA=9,10;RU=A;ReadPosRankSum=0.375;SB=-1.270e+02;SOR=0.602;STR;VQSLOD=3.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,16:33:99:387,0,281
1	117236970	rs614477	G	C	1972.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-5.360e+02;SOR=2.546;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2001,147,0
1	117487710	rs10159095	A	G	1411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.782;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=0.529;SB=-5.570e+02;SOR=0.796;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,49:95:99:1440,0,1278
1	117487711	rs4546904	T	A	1372.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.929;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.707;SB=-5.990e+02;SOR=0.760;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1401,0,1267
1	117487884	rs10923173	G	A	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-1.092;SB=0.00;SOR=0.116;VQSLOD=9.45;culprit=SOR	GT:AD:DP:GQ:PL	0/1:9,7:16:99:202,0,315
1	117555898	rs2764849	G	A	871.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SB=-1.165e+02;SOR=3.442;VQSLOD=4.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:900,69,0
1	117559726	rs2249265	A	G	698.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=7.204;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.121;SB=-2.150e+02;SOR=1.609;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,25:57:99:727,0,945
1	117560089	.	T	C	591.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.402;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.394;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-0.440;SB=-2.140e+02;SOR=0.412;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:620,0,643
1	117568093	rs41276566	G	T	748.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.674;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=0.741;SB=-1.990e+02;SOR=0.693;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,26:52:99:777,0,847
1	117576522	rs34223095	A	T	1542.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.517;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=4.287;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=1.532;SB=-5.290e+02;SOR=1.175;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,54:90:99:1571,0,869
1	117602960	rs2244501	C	A	1477.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-4.210e+02;SOR=2.208;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1506,117,0
1	117603188	rs2244406	G	T	477.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.270;SB=-3.100e+01;SOR=1.179;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:506,0,537
1	117617705	rs998532	A	G	798.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.458;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.062;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.640;SB=-3.710e+02;SOR=0.484;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:55:99:827,0,826
1	117618067	rs1289673	C	T	803.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.194;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=0.741;SB=-2.460e+02;SOR=0.859;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,27:38:99:832,0,312
1	117618722	rs1289672	T	C	1438.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=-1.551e+02;SOR=3.611;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1467,108,0
1	117620384	rs1289670	C	G	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-0.506;SB=0.00;SOR=0.582;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:213,0,274
1	117621947	rs55757120	G	C	97.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=-1.213;SB=0.00;SOR=0.223;VQSLOD=9.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:126,0,316
1	117622286	rs2801939	A	G	774.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.246;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.778;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-1.142;SB=-3.900e+02;SOR=0.291;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,32:64:99:803,0,932
1	117631391	rs1555792	T	C	1529.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-4.080e+02;SOR=2.461;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1558,114,0
1	117659352	rs3738413	C	T	635.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.200;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.26;ReadPosRankSum=0.310;SB=-3.600e+02;SOR=0.748;VQSLOD=8.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,27:77:99:664,0,1369
1	117660608	rs1289655	C	T	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.263;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.864;HaplotypeScore=4.3054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.043;SB=-1.165e+02;SOR=0.030;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:241,0,311
1	117663913	rs3795655	C	T	846.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-2.311e+02;SOR=2.303;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:875,66,0
1	117690272	rs10754339	G	A	905.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.84;SB=-1.593e+02;SOR=3.098;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:69:934,69,0
1	117699714	.	G	GAT	144.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;RPA=11,12;RU=AT;ReadPosRankSum=-0.932;SB=0.00;SOR=0.368;STR;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:24:99:182,0,267
1	117753455	rs34957002	A	G	1228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=7.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=0.364;SB=-5.750e+02;SOR=1.195;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,45:78:99:1257,0,937
1	117957288	rs1289948	A	G	828.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-4.276e+01;SOR=4.804;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:857,63,0
1	117984776	rs2306444	A	T	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.247;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.513;SB=-1.765e+00;SOR=1.802;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:271,0,231
1	118053126	rs41506254	T	C	494.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-1.123;SB=-2.600e+02;SOR=0.725;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,20:30:99:523,0,231
1	118165328	rs844108	T	C	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.528;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.230;SB=-1.765e+00;SOR=1.312;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:436,0,558
1	118165691	rs1630312	C	T	2497.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=185;Dels=0.00;ExcessHet=3.0103;FS=4.270;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-1.182;SB=-1.225e+03;SOR=1.039;VQSLOD=6.53;culprit=DP	GT:AD:DP:GQ:PL	0/1:93,92:185:99:2526,0,2332
1	118165973	rs1627787	C	T	1606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.494;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=6.317;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=1.085;SB=-9.460e+02;SOR=0.312;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,59:105:99:1635,0,1389
1	118166096	rs2884587	C	T	1698.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.092;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=4.062;HaplotypeScore=1.9467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-1.153;SB=-8.760e+02;SOR=1.033;VQSLOD=7.86;culprit=DP	GT:AD:DP:GQ:PL	0/1:68,66:134:99:1727,0,1881
1	118320859	rs1775749	T	A	378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=5;POSITIVE_TRAIN_SITE;QD=19.94;SB=-2.341e+02;SOR=0.976;VQSLOD=3.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:30:407,30,0
1	118321119	rs114485606	T	C	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.90;MQ0=0;MQRankSum=-0.451;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.630;SB=-2.240e+02;SOR=0.551;VQSLOD=3.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,14:25:99:369,0,280
1	118449242	.	A	G	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.761;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.20;ReadPosRankSum=-0.707;SB=-8.297e+01;SOR=0.307;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:297,0,124
1	118483711	rs191175586	A	C	930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.114;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.294;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=0.845;SB=-3.390e+02;SOR=1.042;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,36:60:99:959,0,673
1	118484265	rs10733098	G	A	1795.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=-7.870e+02;SOR=1.238;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1824,138,0
1	118491215	.	G	GT	86.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;DP=34;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.13;RPA=15,16;RU=T;ReadPosRankSum=-0.936;SB=-3.077e+01;SOR=0.053;STR;VQSLOD=6.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:34:99:124,0,235
1	118526592	rs4347199	G	A	593.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;SB=-4.176e+01;SOR=4.294;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:622,48,0
1	118579224	rs367694732	G	GAC	398.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.769;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.754;POSITIVE_TRAIN_SITE;QD=26.58;RPA=12,13;RU=AC;ReadPosRankSum=0.653;SB=-8.997e+01;SOR=0.368;STR;VQSLOD=3.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,11:15:97:436,0,97
1	118623681	.	TAC	T	106.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DP=19;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.93;RPA=16,15;RU=AC;ReadPosRankSum=-0.296;SB=-3.500e+01;SOR=0.138;STR;VQSLOD=6.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:19:99:144,0,474
1	118629125	rs2798150	T	C	405.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=0.00;SOR=5.136;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:434,33,0
1	118693217	rs1935992	T	C	969.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=0.178;SB=-3.260e+02;SOR=0.796;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,37:61:99:998,0,763
1	119466275	rs4659129	A	G	672.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-1.483e+02;SOR=2.636;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:701,51,0
1	119467127	rs1779437	C	T	400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=0.00;SOR=4.977;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:429,33,0
1	119628096	.	C	CT	186.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DP=20;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.34;RPA=7,8;RU=T;ReadPosRankSum=0.532;SB=-7.100e+01;SOR=1.179;STR;VQSLOD=6.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:20:99:224,0,252
1	119683063	rs3934789	G	A	509.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.270;SB=-2.400e+02;SOR=0.732;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,18:46:99:538,0,862
1	119683390	rs12096448	G	A	285.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.375;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.197;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=1.026;SB=-9.732e-01;SOR=2.303;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:314,0,310
1	119923531	rs2224995	A	C	1713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-9.740e+02;SOR=0.846;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1742,126,0
1	119923724	rs2275607	T	C	1728.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.775;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.539;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.823;SB=-9.110e+02;SOR=0.959;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,62:112:99:1757,0,1278
1	119925403	rs1341007	C	T	774.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.321;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=0.239;SB=-3.100e+02;SOR=0.371;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,27:48:99:803,0,690
1	119925464	rs2298027	G	A	1299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=6.371;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-0.621;SB=-6.210e+02;SOR=0.250;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,48:85:99:1328,0,1055
1	119927680	rs6667679	A	G	3068.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-1.355e+03;SOR=1.295;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3097,229,0
1	119927969	rs6670497	T	G	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=0.405;SB=-1.765e+00;SOR=2.584;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:95:220,0,95
1	119935507	rs10802092	A	T	322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.470;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=0.000;SB=-3.976e+01;SOR=0.610;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:351,0,145
1	119936263	rs3765949	G	A	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.397;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.147;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=0.091;SB=-2.590e+02;SOR=0.440;VQSLOD=7.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,21:53:99:511,0,776
1	119987849	rs75755272	G	C	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.85;ReadPosRankSum=0.423;SB=-5.600e+01;SOR=1.085;VQSLOD=8.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:22:99:157,0,441
1	119988071	rs10802094	C	T	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.579;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=9.164;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-0.596;SB=-3.460e+02;SOR=0.114;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,25:46:99:680,0,661
1	119988404	rs10923823	C	T	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.981;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-1.449;SB=-5.600e+01;SOR=1.643;VQSLOD=6.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,8:21:99:238,0,331
1	119988512	rs10923824	G	A	269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.172;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-2.160;SB=-1.180e+02;SOR=1.172;VQSLOD=7.30;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,11:29:99:298,0,486
1	120050463	rs2236780	A	G	490.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=0.00;SOR=5.283;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:519,39,0
1	120057158	rs6203	C	T	3143.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-1.143e+03;SOR=1.735;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:97:99:3172,235,0
1	120057246	rs1047303	C	A	1284.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-1.205e+02;SOR=4.351;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1313,102,0
1	120085507	rs2208381	A	G	398.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.48;SB=-1.633e+02;SOR=1.765;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:427,33,0
1	120085571	rs2208382	C	A	635.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.64;SB=-4.280e+02;SOR=0.776;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:664,48,0
1	120088317	rs2885613	T	C	421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-1.115e+02;SOR=2.303;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:450,33,0
1	120088356	rs2885614	A	G	598.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-3.260e+02;SOR=1.022;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:627,45,0
1	120088400	rs5009592	C	T	545.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-3.150e+02;SOR=0.914;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:574,42,0
1	120088430	rs6663497	C	T	537.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.63;SB=-2.311e+02;SOR=1.371;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:42:566,42,0
1	120110685	rs12745167	G	A	588.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-3.750e+02;SOR=0.693;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:45:617,45,0
1	120110708	rs12745178	G	T	537.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.30;SB=-3.540e+02;SOR=0.793;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:566,42,0
1	120110768	rs12746459	C	T	258.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=1;POSITIVE_TRAIN_SITE;QD=25.88;SB=-1.603e+02;SOR=0.892;VQSLOD=4.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:287,21,0
1	120110774	rs12727832	A	G	265.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=1;POSITIVE_TRAIN_SITE;QD=26.58;SB=-1.653e+02;SOR=0.892;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:294,21,0
1	120110779	rs71519737	C	T	261.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=1;QD=26.18;SB=-1.603e+02;SOR=0.892;VQSLOD=3.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:290,21,0
1	120110781	rs71519738	G	T	261.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=1;QD=26.18;SB=-1.603e+02;SOR=0.892;VQSLOD=4.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:21:290,21,0
1	120110783	rs71519739	A	G	264.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=1;QD=26.48;SB=-1.603e+02;SOR=0.892;VQSLOD=3.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:293,21,0
1	120165826	rs12076924	C	T	1286.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=-3.820e+02;SOR=2.012;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1315,99,0
1	120166681	rs12067843	G	A	2061.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-1.260e+03;SOR=0.849;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2090,150,0
1	120254545	rs562038	G	C	453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=0.00;SOR=5.136;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:482,36,0
1	120263657	rs894079	A	G	798.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.135;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.120;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=0.284;SB=-2.120e+02;SOR=0.331;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,28:51:99:827,0,652
1	120267282	.	AT	A	135.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;DP=20;ExcessHet=3.0103;FS=10.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.14;RPA=17,16;RU=T;ReadPosRankSum=0.816;SB=-6.390e-01;SOR=3.702;STR;VQSLOD=4.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,10:20:99:173,0,143
1	120267544	rs1886736	C	T	1009.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.956;SB=-4.040e+02;SOR=0.807;VQSLOD=8.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,36:67:99:1038,0,825
1	120267597	rs3838425	GC	G	987.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;DB;DP=49;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.02;RPA=2,1;RU=C;ReadPosRankSum=-1.081;SB=-3.780e+02;SOR=1.101;STR;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,26:49:99:1025,0,825
1	120267700	rs3838424	CAGA	C	328.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.92;RPA=2,1;RU=AGA;ReadPosRankSum=0.905;SB=-1.764e+00;SOR=1.609;STR;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:16:99:366,0,448
1	120269567	rs2236398	G	C	1373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.060;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=2.329;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=0.176;SB=-5.710e+02;SOR=0.923;VQSLOD=7.11;culprit=DP	GT:AD:DP:GQ:PL	0/1:78,54:132:99:1402,0,2041
1	120283249	rs610404	A	G	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.221;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-0.228;SB=0.00;SOR=0.693;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:340,0,352
1	120285546	rs543703	G	A	460.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=1.990;SB=-2.500e+02;SOR=0.556;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,19:45:99:489,0,723
1	120286457	rs2236399	G	T	317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=0.782;SB=0.00;SOR=1.061;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:346,0,205
1	120293367	rs667246	T	C	1284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.769;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=6.256;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=0.277;SB=-4.920e+02;SOR=0.183;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,50:74:99:1313,0,723
1	120311041	rs2843018	G	A	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=-0.327;SB=0.00;SOR=0.269;VQSLOD=9.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:118,0,291
1	120336785	rs1052972	C	T	662.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.219;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.661;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-0.119;SB=-2.780e+02;SOR=1.220;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,25:44:99:691,0,486
1	120336876	rs699778	T	G	413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.185;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.331;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=2.376;SB=-2.310e+02;SOR=0.619;VQSLOD=7.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,15:36:99:442,0,616
1	120337384	rs947270	T	C	731.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.500;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-2.375;SB=-3.000e+01;SOR=1.066;VQSLOD=7.76;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,23:49:99:760,0,811
1	120337403	rs947271	A	G	467.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.442;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-1.997;SB=-1.765e+00;SOR=1.136;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,15:37:99:496,0,727
1	120342167	rs2793836	T	C	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=1.524;SB=0.00;SOR=1.179;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:280,0,151
1	120378678	rs3009182	C	T	2366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-1.520e+03;SOR=0.770;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2395,172,0
1	120380008	rs3009184	T	A	486.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-1.135e+02;SOR=2.049;VQSLOD=6.57;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:39:515,39,0
1	120381686	rs34302627	G	GTGTGAGTCA	1586.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.86;SB=0.00;SOR=5.421;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:1624,42,0
1	120381687	rs200209132	G	C	499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.74;SB=0.00;SOR=5.283;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:528,39,0
1	120384205	.	A	G	1191.77	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.56;SB=-5.070e+02;SOR=1.387;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1220,87,0
1	120404614	rs3850866	T	C	294.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.80;SB=-1.205e+02;SOR=1.270;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:323,24,0
1	120436751	rs35273427	T	C	1035.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-5.630e+02;SOR=1.022;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1064,78,0
1	120437718	rs2793823	G	A	3293.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-1.894e+03;SOR=0.773;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3322,244,0
1	120437884	rs2641348	A	G	3288.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-1.841e+03;SOR=0.859;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3317,241,0
1	120458004	rs6685892	A	T	3200.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.33;SB=-1.167e+03;SOR=1.735;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3229,238,0
1	120461253	rs2793829	C	T	728.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-2.311e+02;SOR=2.124;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:757,57,0
1	120464165	rs835573	C	T	1365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-8.097e+01;SOR=4.977;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1394,105,0
1	120466108	rs2793830	G	A	716.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=0.00;SOR=5.994;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:745,57,0
1	120471424	rs2493393	C	T	410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=0.00;SOR=4.977;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:439,33,0
1	120471857	rs2493392	C	T	2862.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-1.426e+03;SOR=1.065;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2891,220,0
1	120477998	rs2453056	C	A	1274.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-4.520e+02;SOR=1.788;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1303,99,0
1	120480394	rs2453057	T	C	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-4.176e+01;SOR=3.258;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
1	120480709	rs2453058	C	T	748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.18;SB=-4.176e+01;SOR=4.712;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:777,60,0
1	120484421	rs2493420	G	A	1508.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-3.930e+02;SOR=2.560;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1537,114,0
1	120496119	rs7534585	A	T	1992.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=-4.540e+02;SOR=2.683;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2021,150,0
1	120496127	rs7534586	A	C	2212.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-5.550e+02;SOR=2.483;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2241,163,0
1	120506108	rs2934381	G	A	2130.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-1.145e+03;SOR=0.784;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2159,163,0
1	120512104	rs2493409	T	C	1183.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-7.397e+01;SOR=4.680;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:93:1212,93,0
1	120529750	rs2453040	A	C	800.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-1.971e+02;SOR=2.494;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:829,66,0
1	120611374	.	G	A	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.36;MQ0=0;MQRankSum=0.275;QD=5.80;ReadPosRankSum=-1.248;SB=-3.500e+01;SOR=0.527;VQSLOD=1.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:92:92,0,163
1	120611715	rs2794167	A	G	1456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=2;POSITIVE_TRAIN_SITE;QD=26.98;SB=-7.300e+02;SOR=1.480;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1485,114,0
1	120611876	rs11801062	C	T	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.932;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.85;MQ0=1;MQRankSum=0.065;QD=8.36;ReadPosRankSum=0.612;SB=-2.801e+01;SOR=0.941;VQSLOD=2.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:162,0,303
1	120612194	rs79247096	C	G	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.34;MQ0=0;MQRankSum=-2.469;QD=2.89;ReadPosRankSum=-0.912;SB=-3.200e+01;SOR=0.693;VQSLOD=1.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:86:86,0,366
1	120612297	rs138452656	C	A	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.80;MQ0=0;MQRankSum=2.345;QD=14.48;ReadPosRankSum=0.108;SB=-3.577e+01;SOR=0.307;VQSLOD=1.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:59:173,0,59
1	121116933	rs79097880	T	C	842.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=42.70;SB=-7.797e+01;SOR=4.003;VQSLOD=3.24;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,23:23:63:871,63,0
1	121116953	rs78187610	A	G	724.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=25.50;SB=0.00;SOR=5.994;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:753,57,0
1	121484360	rs9662466	C	T	302.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=25.23;SB=-1.145e+02;SOR=1.445;VQSLOD=4.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:331,24,0
1	121484381	rs4898062	C	G	347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=28.98;SB=-1.543e+02;SOR=1.022;VQSLOD=4.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:376,30,0
1	121484383	rs71257330	T	G	374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.01;MQ0=0;QD=31.23;SB=-1.175e+02;SOR=1.445;VQSLOD=5.77;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:13:30:394,30,0
1	121484388	rs10437190	T	C	431.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=30.84;SB=-1.583e+02;SOR=1.329;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:460,36,0
1	121484397	rs58399548	A	C	43.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.191;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9965;MLEAC=1;MLEAF=0.500;MQ=54.04;MQ0=0;MQRankSum=0.107;QD=2.08;ReadPosRankSum=0.269;SB=-6.829e-02;SOR=0.859;VQSLOD=1.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:21:72:72,0,497
1	121484423	rs7368003	T	C	1115.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9661;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=1;QD=31.88;SB=-3.200e+02;SOR=2.049;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1144,84,0
1	121484503	rs4898086	T	A	1899.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.2232;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=2;QD=28.78;SB=-9.270e+02;SOR=1.306;VQSLOD=3.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1928,144,0
1	121484591	rs4898109	T	A	2515.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.7097;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=29.25;SB=-1.588e+03;SOR=0.740;VQSLOD=4.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2544,190,0
1	121484685	rs9701937	A	G	2336.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.508;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.1895;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.962;QD=27.82;ReadPosRankSum=0.587;SB=-1.523e+03;SOR=0.693;VQSLOD=1.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,82:84:99:2365,136,0
1	121484688	rs2128558	T	A	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.668;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.9204;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=0.362;QD=2.04;ReadPosRankSum=1.112;SB=-9.200e+01;SOR=0.734;VQSLOD=0.080;culprit=QD	GT:AD:DP:GQ:PL	0/1:68,11:80:99:189,0,1791
1	121484712	.	T	G	2041.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.036;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.9797;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.087;QD=27.22;ReadPosRankSum=0.984;SB=-1.209e+03;SOR=0.693;VQSLOD=2.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,73:75:99:2070,108,0
1	121484729	rs4092776	C	T	1985.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=32.6374;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=31.52;SB=-1.187e+03;SOR=0.724;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:66:99:2014,150,0
1	121484951	.	T	C	1905.77	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=30.74;SB=-1.191e+03;SOR=0.826;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1934,144,0
1	142542779	rs75734156	G	T	72.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=45.68;MQ0=1;MQRankSum=-0.684;QD=3.47;ReadPosRankSum=-1.191;SB=-8.600e+01;SOR=0.787;VQSLOD=1.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:101,0,302
1	142713152	rs142135372	T	G	55.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=46.97;MQ0=0;MQRankSum=-0.409;POSITIVE_TRAIN_SITE;QD=4.65;ReadPosRankSum=2.287;SB=-2.601e+01;SOR=1.609;VQSLOD=2.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:84:84,0,202
1	142806045	.	A	G	32.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=44.85;MQ0=0;MQRankSum=-0.858;QD=2.73;ReadPosRankSum=0.000;SB=0.00;SOR=0.148;VQSLOD=1.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:61:61,0,310
1	142806053	.	C	A	62.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=47.79;MQ0=0;MQRankSum=-0.729;QD=4.18;ReadPosRankSum=0.262;SB=0.00;SOR=0.160;VQSLOD=2.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:91:91,0,383
1	142806056	.	A	G	36.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.183;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=47.79;MQ0=0;MQRankSum=0.073;QD=2.45;ReadPosRankSum=0.144;SB=0.00;SOR=0.090;VQSLOD=2.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:15:65:65,0,409
1	142813414	.	T	G	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.062;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9139;MLEAC=1;MLEAF=0.500;MQ=53.22;MQ0=2;MQRankSum=1.191;QD=5.21;ReadPosRankSum=1.051;SB=0.00;SOR=0.116;VQSLOD=1.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,6:27:99:169,0,647
1	142823591	rs4118776	G	A	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8997;MLEAC=1;MLEAF=0.500;MQ=49.71;MQ0=0;MQRankSum=0.581;QD=7.21;ReadPosRankSum=1.221;SB=-3.377e+01;SOR=0.330;VQSLOD=1.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:122,0,202
1	142826369	rs149192684	C	A	788.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.553;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.78;MQ0=2;MQRankSum=-3.306;QD=21.32;ReadPosRankSum=-0.094;SB=-4.010e+02;SOR=0.941;VQSLOD=1.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,32:37:99:817,0,118
1	143188558	rs61784870	C	A	87.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.74;MQ0=0;MQRankSum=-2.424;QD=4.88;ReadPosRankSum=0.816;SB=-2.657e-01;SOR=0.941;VQSLOD=1.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:116,0,265
1	143188600	rs61784871	G	T	56.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.80;MQ0=1;MQRankSum=-1.871;QD=4.05;ReadPosRankSum=-1.442;SB=-9.732e-01;SOR=0.765;VQSLOD=1.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:14:85:85,0,227
1	143744160	rs61823125	G	A	107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=0;MQRankSum=-1.338;QD=5.99;ReadPosRankSum=-0.188;SB=-6.400e+01;SOR=0.619;VQSLOD=1.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,6:18:99:136,0,259
1	144013853	rs6600697	T	C	1239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.740;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=1.581;HaplotypeScore=3.5535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.875;SB=-4.490e+02;SOR=0.428;VQSLOD=4.21;culprit=DP	GT:AD:DP:GQ:PL	0/1:118,49:167:99:1268,0,3229
1	144013865	rs6600696	T	G	1217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.985;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=1.448;HaplotypeScore=2.7604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-0.592;SB=-4.820e+02;SOR=0.524;VQSLOD=3.58;culprit=DP	GT:AD:DP:GQ:PL	0/1:132,52:184:99:1246,0,3930
1	144014051	rs1884147	G	A	1278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.442;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.397;SB=-3.410e+02;SOR=0.725;VQSLOD=6.07;culprit=DP	GT:AD:DP:GQ:PL	0/1:93,53:146:99:1307,0,2865
1	144014068	rs1884146	T	C	2060.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.885;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=2.109;HaplotypeScore=2.4056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.08;ReadPosRankSum=-0.286;SB=-5.290e+02;SOR=0.415;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,73:114:99:2089,0,1181
1	144617119	rs12057892	A	C	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.314;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.95;MQ0=2;MQRankSum=-4.367;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.164;SB=-1.240e+02;SOR=0.653;VQSLOD=1.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,13:27:99:349,0,446
1	144811924	rs320821	T	G	1542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=2;POSITIVE_TRAIN_SITE;QD=26.60;SB=-8.540e+02;SOR=1.199;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1571,117,0
1	144825577	rs633899	G	A	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=47.50;MQ0=4;MQRankSum=0.355;QD=10.41;ReadPosRankSum=0.398;SB=-3.000e+01;SOR=1.508;VQSLOD=1.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:99:174,0,159
1	144828377	rs75713275	T	C	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=46.94;MQ0=0;MQRankSum=-3.436;QD=4.03;ReadPosRankSum=-0.969;SB=0.00;SOR=0.275;VQSLOD=1.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:23:99:121,0,484
1	144828404	rs597581	T	A	524.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;DB;DP=31;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9396;MLEAC=1;MLEAF=0.500;MQ=44.68;MQ0=0;MQRankSum=3.625;QD=17.49;ReadPosRankSum=1.313;SB=0.00;SOR=1.143;VQSLOD=1.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,18:30:99:553,0,246
1	144828418	rs79756393	C	T	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.877;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7147;MLEAC=1;MLEAF=0.500;MQ=43.49;MQ0=0;MQRankSum=-4.531;QD=5.58;ReadPosRankSum=-0.016;SB=-1.765e+00;SOR=1.201;VQSLOD=0.024;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,15:36:99:229,0,527
1	144828857	rs201893749	C	G	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8731;MLEAC=1;MLEAF=0.500;MQ=43.35;MQ0=0;MQRankSum=-1.031;QD=5.79;ReadPosRankSum=-0.321;SB=-5.600e+01;SOR=0.559;VQSLOD=4.200e-03;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,12:45:99:289,0,831
1	144852390	rs61804988	C	T	383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=-2.892;QD=11.99;ReadPosRankSum=-1.226;SB=-2.430e+02;SOR=0.693;VQSLOD=1.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,16:32:99:412,0,393
1	144854351	rs599643	A	C	4119.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.662;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=32.0151;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.000;QD=28.81;ReadPosRankSum=-0.315;SB=-2.366e+03;SOR=0.595;VQSLOD=2.64;culprit=DP	GT:AD:DP:GQ:PL	1/1:1,142:143:99:4148,301,0
1	144854397	rs833193	T	C	3692.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-1.757e+03;SOR=1.159;VQSLOD=4.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3721,271,0
1	144854730	rs75855616	A	G	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.092;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=57.68;MQ0=0;MQRankSum=-3.462;QD=3.57;ReadPosRankSum=1.031;SB=0.00;SOR=0.086;VQSLOD=1.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,5:24:99:114,0,678
1	144854750	rs75538208	G	A	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.105;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=0;MQRankSum=-3.089;QD=4.64;ReadPosRankSum=0.437;SB=0.00;SOR=0.132;VQSLOD=1.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:121,0,540
1	144854765	rs78741893	T	C	73.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.352;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=56.24;MQ0=0;MQRankSum=-2.986;QD=4.92;ReadPosRankSum=0.783;SB=0.00;SOR=0.160;VQSLOD=1.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:99:102,0,389
1	144857068	rs905324	A	T	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.41;ReadPosRankSum=0.707;SB=-1.765e+00;SOR=0.693;VQSLOD=8.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:118,0,349
1	144857783	rs76955504	A	C	277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.154;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.26;MQ0=0;MQRankSum=0.118;QD=4.87;ReadPosRankSum=-1.799;SB=-1.400e+02;SOR=0.613;VQSLOD=0.882;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,14:57:99:306,0,1129
1	144857876	rs1698578	T	G	395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.615;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-0.822;QD=17.99;ReadPosRankSum=0.396;SB=-3.500e+01;SOR=0.892;VQSLOD=2.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,12:22:99:424,0,285
1	144859720	rs678786	G	C	452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=-4.276e+01;SOR=3.767;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:481,36,0
1	144860026	rs1699819	G	C	796.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.715;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=0.240;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.884;SB=-3.260e+02;SOR=0.246;VQSLOD=0.041;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,27:48:99:825,0,613
1	144860131	rs1699818	A	G	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=0;MQRankSum=0.903;QD=22.58;ReadPosRankSum=0.319;SB=0.00;SOR=1.609;VQSLOD=2.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:84:254,0,84
1	144863613	rs1699812	C	T	319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.071;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-1.603;SB=-1.765e+00;SOR=1.055;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:31:99:348,0,586
1	144864454	rs1747948	G	A	1229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.396;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.639;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.203;SB=-1.710e+02;SOR=0.203;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,41:81:99:1258,0,1292
1	144864491	rs1698595	T	C	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.399;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.24;ReadPosRankSum=0.153;SB=-3.500e+01;SOR=0.606;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:611,0,739
1	144865627	rs745937	T	C	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.241;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.12;ReadPosRankSum=0.936;SB=0.00;SOR=0.200;VQSLOD=9.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,7:23:99:215,0,562
1	144865850	rs1613780	G	T	1812.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.356;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-0.176;SB=-9.800e+02;SOR=0.735;VQSLOD=7.76;culprit=DP	GT:AD:DP:GQ:PL	0/1:73,70:143:99:1841,0,1888
1	144866509	rs924667	G	A	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.798;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=8.039;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.374;SB=-1.460e+02;SOR=0.073;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:368,0,514
1	144866643	rs1620560	G	A	848.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.317;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=2.869;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=-0.516;SB=-5.550e+02;SOR=0.694;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,37:89:99:877,0,1235
1	144866662	rs1064044	T	C	864.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.206;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-0.844;SB=-6.110e+02;SOR=0.444;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,38:93:99:893,0,1239
1	144868170	rs1628310	C	T	954.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=0.476;SB=-1.330e+02;SOR=0.722;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,30:54:99:983,0,718
1	144868204	rs1747951	A	C	747.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.941;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=0.243;SB=-3.377e+01;SOR=0.430;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,22:36:99:776,0,449
1	144868239	rs1618966	G	A	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.802;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.89;ReadPosRankSum=1.718;SB=-1.765e+00;SOR=0.836;VQSLOD=7.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:215,0,500
1	144871738	rs1698605	C	A	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.705;SB=-1.765e+00;SOR=1.371;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:163,0,217
1	144871755	rs1778159	A	T	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.05;ReadPosRankSum=0.281;SB=-9.600e+01;SOR=0.551;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:216,0,219
1	144871782	rs1778158	A	G	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.719;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.56;ReadPosRankSum=-0.254;SB=-1.730e+02;SOR=1.179;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:334,0,205
1	144871889	rs1698606	A	C	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.055;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=8.929;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=0.000;SB=-2.441e+02;SOR=0.045;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,14:19:99:409,0,146
1	144873794	rs1610833	C	T	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.432;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=5.645;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.32;ReadPosRankSum=0.257;SB=-8.900e+01;SOR=1.520;VQSLOD=5.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:56,24:80:99:694,0,1556
1	144873818	rs1610566	A	G	916.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.706;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=3.050;HaplotypeScore=1.4450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.82;ReadPosRankSum=0.010;SB=-2.350e+02;SOR=1.093;VQSLOD=5.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:70,34:104:99:945,0,1967
1	144873840	rs1627335	A	G	1132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=-0.749;SB=-4.600e+02;SOR=0.680;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:78,45:123:99:1161,0,2195
1	144873887	rs1699787	C	T	1448.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=2.038;HaplotypeScore=4.6896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=0.332;SB=-6.460e+02;SOR=0.872;VQSLOD=6.18;culprit=DP	GT:AD:DP:GQ:PL	0/1:101,61:162:99:1477,0,2756
1	144874088	rs1419158	G	C	693.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.933;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQ0=0;MQRankSum=1.688;QD=11.76;ReadPosRankSum=-1.672;SB=-1.330e+02;SOR=0.573;VQSLOD=1.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,25:59:99:722,0,1055
1	144874489	rs1699788	G	A	322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.90;ReadPosRankSum=-0.215;SB=0.00;SOR=2.670;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,10:12:36:351,0,36
1	144874641	rs1610771	G	C	1770.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.878;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=3.075;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=1.790;SB=-7.030e+02;SOR=0.396;VQSLOD=7.04;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,60:96:99:1799,0,981
1	144874760	rs1610774	T	C	1839.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.087;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=1.324;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-0.177;SB=-1.132e+03;SOR=0.733;VQSLOD=7.22;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,69:141:99:1868,0,1644
1	144874835	rs111839403	G	A	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.927;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.43;ReadPosRankSum=1.063;SB=-1.310e+02;SOR=0.521;VQSLOD=6.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:63,18:81:99:387,0,1935
1	144874950	rs1747957	G	A	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-0.276;SB=0.00;SOR=0.836;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:230,0,208
1	144875799	rs764983	G	A	786.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.187;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.810;QD=17.48;ReadPosRankSum=-0.655;SB=0.00;SOR=1.038;VQSLOD=2.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,26:45:99:815,0,649
1	144877176	rs2762875	C	T	488.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=5.478;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-1.911;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=-0.572;SB=-1.503e+02;SOR=0.116;VQSLOD=0.022;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,17:24:99:517,0,209
1	144877366	rs1807092	A	G	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.249;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.04;ReadPosRankSum=1.280;SB=-7.497e+01;SOR=0.129;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:352,0,263
1	144877390	rs1807093	G	A	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.12;ReadPosRankSum=0.687;SB=0.00;SOR=1.112;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:315,0,202
1	144878928	rs2762876	G	T	1193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.642;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=4.768;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.56;ReadPosRankSum=0.324;SB=-3.240e+02;SOR=0.217;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,40:68:99:1222,0,884
1	144879264	rs2798901	A	G	554.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.484;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.366;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.868;SB=-3.350e+02;SOR=0.368;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,22:55:99:583,0,965
1	144879375	rs1747958	T	C	1457.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.241;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.996;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=2.320;SB=-4.900e+02;SOR=1.063;VQSLOD=7.01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,51:82:99:1486,0,846
1	144879667	.	G	A	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQ0=0;MQRankSum=-3.252;QD=4.76;ReadPosRankSum=-0.235;SB=-1.765e+00;SOR=0.404;VQSLOD=1.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,5:22:99:133,0,584
1	144881389	rs1614163	T	C	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-1.378;SB=0.00;SOR=1.329;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:317,0,158
1	144881711	rs937714	T	G	329.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.581;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.40;ReadPosRankSum=0.586;SB=-1.765e+00;SOR=2.387;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:358,0,196
1	144882581	rs1699836	A	G	1218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.187;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-0.948;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=1.164;SB=-4.230e+02;SOR=0.770;VQSLOD=2.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1247,0,1205
1	144882823	rs1698647	C	T	2512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-11.229;DB;DP=233;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.784;SB=-1.244e+03;SOR=0.683;VQSLOD=4.20;culprit=DP	GT:AD:DP:GQ:PL	0/1:132,101:233:99:2541,0,3566
1	144882912	rs1698646	G	T	1318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.036;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=5.230;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-0.208;SB=-1.710e+02;SOR=1.456;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,47:101:99:1347,0,1544
1	144886063	rs1625285	T	C	601.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.956;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.641;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=1.184;SB=-8.700e+01;SOR=1.638;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,21:39:99:630,0,505
1	144886092	rs1343472	C	T	780.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.562;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=9.823;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=0.904;SB=-1.570e+02;SOR=2.226;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,27:46:99:809,0,579
1	144886197	rs1698624	A	T	1184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-1.167;SB=-6.720e+02;SOR=0.616;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,47:89:99:1213,0,1108
1	144886409	rs1620507	A	C	572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.420;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.85;ReadPosRankSum=0.469;SB=-6.600e+01;SOR=0.976;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:601,0,428
1	144890833	rs11447	T	C	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.55;ReadPosRankSum=-0.687;SB=-1.766e+00;SOR=2.303;VQSLOD=5.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:288,0,187
1	144892089	rs1614098	G	T	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.049;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-2.432;QD=9.27;ReadPosRankSum=0.476;SB=-2.004e+01;SOR=0.850;VQSLOD=1.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,11:32:99:325,0,702
1	144906508	rs34169189	C	T	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.318;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8621;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-1.311;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-0.533;SB=-3.450e+02;SOR=0.922;VQSLOD=3.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,25:47:99:610,0,509
1	144910082	rs638780	A	G	989.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-4.460e+02;SOR=1.542;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1018,75,0
1	144912153	rs1628172	A	G	470.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-1.991e+02;SOR=1.329;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:499,39,0
1	144912233	.	C	T	265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.84;ReadPosRankSum=2.012;SB=-9.600e+01;SOR=0.818;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:27:99:294,0,466
1	144915624	rs1778112	G	A	573.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.516;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=-1.592;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=0.058;SB=-1.050e+02;SOR=0.919;VQSLOD=3.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,20:32:99:602,0,323
1	144916486	rs1699798	T	G	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.57;ReadPosRankSum=0.088;SB=0.00;SOR=0.223;VQSLOD=8.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:172,0,433
1	144916493	rs1699799	A	G	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.992;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-0.412;SB=0.00;SOR=0.245;VQSLOD=7.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,9:27:99:236,0,627
1	144916676	rs1698683	C	T	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.814;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.96;ReadPosRankSum=0.641;SB=-2.290e+02;SOR=0.740;VQSLOD=4.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:120,25:145:99:457,0,3367
1	144916748	rs1747930	C	G	1241.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.045;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.758;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-0.236;SB=-5.270e+02;SOR=0.575;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,47:114:99:1270,0,1852
1	144917546	rs1698682	A	G	1442.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.013;SB=-8.880e+02;SOR=0.734;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,56:123:99:1471,0,1852
1	144917827	rs11295415	CA	C	225.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.83;MQ0=0;MQRankSum=-0.032;POSITIVE_TRAIN_SITE;QD=8.68;RPA=2,1;RU=A;ReadPosRankSum=-0.083;SB=-9.300e+01;SOR=0.919;STR;VQSLOD=3.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,8:26:99:263,0,734
1	144917841	rs1698681	T	C	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=0.820;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-1.368;SB=-1.180e+02;SOR=0.951;VQSLOD=3.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,12:27:99:333,0,440
1	144918034	rs2655804	A	G	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-0.293;SB=-5.600e+01;SOR=1.112;VQSLOD=8.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:99:177,0,254
1	144918957	rs1061308	T	A	483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.897;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.064;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-1.980;SB=-3.200e+02;SOR=0.784;VQSLOD=2.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,21:45:99:512,0,662
1	144919008	rs11296953	AC	A	322.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;DB;DP=40;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.07;RPA=2,1;RU=C;ReadPosRankSum=1.501;SB=-1.740e+02;SOR=0.269;STR;VQSLOD=7.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,11:40:99:360,0,1165
1	144919072	rs113069591	G	C	59.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.60;ReadPosRankSum=1.016;SB=-5.150e-01;SOR=0.869;VQSLOD=6.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,4:23:88:88,0,576
1	144919094	rs1698680	C	T	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-0.733;SB=-4.076e+01;SOR=0.223;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:189,0,249
1	144922109	rs1343469	A	G	2416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.606;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=8.312;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.69;ReadPosRankSum=1.165;SB=-1.315e+03;SOR=0.424;VQSLOD=3.23;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,80:154:99:2445,0,2066
1	144922171	rs1343470	C	T	2352.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-1.151;SB=-1.424e+03;SOR=0.652;VQSLOD=7.65;culprit=DP	GT:AD:DP:GQ:PL	0/1:66,91:157:99:2381,0,1711
1	144922523	rs2455994	C	T	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.653;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.72;ReadPosRankSum=0.074;SB=-1.420e+02;SOR=0.682;VQSLOD=6.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:74,20:94:99:378,0,2212
1	144922583	rs1359300	G	A	1190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.594;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.245;SB=-6.890e+02;SOR=0.919;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,47:104:99:1219,0,1447
1	144923503	rs1778126	C	T	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.67;ReadPosRankSum=0.227;SB=0.00;SOR=1.609;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:375,0,150
1	144923535	rs1778127	A	G	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.299;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.62;ReadPosRankSum=0.674;SB=0.00;SOR=1.051;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:24:99:475,0,321
1	144923576	rs112261846	A	C	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.96;ReadPosRankSum=-1.721;SB=0.00;SOR=0.184;VQSLOD=5.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,17:56:99:474,0,1344
1	144923823	rs11268079	TAGGAAGAAACGGCA	T	10214.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;RPA=2,1;RU=AGGAAGAAACGGCA;SB=-1.135e+03;SOR=4.014;STR;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:108:99:10252,196,0
1	144930562	rs199782170	A	T	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=8.847;HaplotypeScore=8.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.78;ReadPosRankSum=0.366;SB=-1.352e-01;SOR=2.442;VQSLOD=5.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,9:50:99:217,0,1087
1	144930571	rs2762866	C	A	664.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.746;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=5.860;HaplotypeScore=8.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=1.063;SB=-2.140e+02;SOR=1.553;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:693,0,688
1	144930596	rs2762867	C	A	775.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.517;SB=-4.140e+02;SOR=0.793;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,33:64:99:804,0,839
1	144930940	rs2147326	T	C	2513.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.683;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=4.633;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=0.363;SB=-1.307e+03;SOR=0.864;VQSLOD=7.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,88:162:99:2542,0,1978
1	144931330	rs2762745	C	T	2458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-12.143;DB;DP=214;Dels=0.00;ExcessHet=3.0103;FS=0.500;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-0.574;SB=-1.441e+03;SOR=0.636;VQSLOD=5.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:118,96:214:99:2487,0,3461
1	144931392	rs2798893	G	A	3191.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;DB;DP=249;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-0.733;SB=-1.617e+03;SOR=0.596;VQSLOD=3.89;culprit=DP	GT:AD:DP:GQ:PL	0/1:135,114:249:99:3220,0,3928
1	144931727	rs2985363	G	A	1096.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.124;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=5.769;HaplotypeScore=2.4959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=-1.252;SB=-2.040e+02;SOR=0.160;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,39:75:99:1125,0,1227
1	144946510	rs2488977	C	T	1296.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-1.165e+02;SOR=4.235;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1325,99,0
1	144946768	rs2762733	G	A	783.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.608;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=9.219;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-0.835;SB=-3.010e+02;SOR=0.121;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,31:66:99:812,0,1104
1	144994658	rs1664022	C	A	3022.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=6.932;HaplotypeScore=3.9756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-2.307;SB=-1.572e+03;SOR=1.101;VQSLOD=3.26;culprit=DP	GT:AD:DP:GQ:PL	0/1:136,114:250:99:3051,0,4194
1	144994861	rs2442640	C	T	3490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=5.164;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.06;ReadPosRankSum=-1.680;SB=-1.130e+03;SOR=1.200;VQSLOD=4.15;culprit=DP	GT:AD:DP:GQ:PL	0/1:60,114:174:99:3519,0,1492
1	145013802	rs2500344	T	G	339.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.98;SB=0.00;SOR=4.804;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:368,30,0
1	145014053	rs548602	T	C	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.035;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.72;ReadPosRankSum=1.751;SB=-1.540e+02;SOR=0.745;VQSLOD=5.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,14:73:99:296,0,1637
1	145014103	rs1778711	G	C	785.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.58;ReadPosRankSum=0.196;SB=-4.380e+02;SOR=0.642;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,31:82:99:814,0,1469
1	145014186	.	GA	G	160.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.63;RPA=12,11;RU=A;ReadPosRankSum=-0.014;SB=-1.160e+02;SOR=0.536;STR;VQSLOD=6.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,19:64:99:198,0,797
1	145014210	rs1778710	G	A	377.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9197;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=0.651;QD=5.25;ReadPosRankSum=-0.434;SB=-2.150e+02;SOR=0.728;VQSLOD=0.666;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,20:72:99:406,0,1614
1	145014263	rs1778708	C	T	712.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.194;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.099;SB=-4.220e+02;SOR=0.682;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,30:74:99:741,0,1134
1	145014394	rs1107089	C	T	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.357;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.02;ReadPosRankSum=1.662;SB=-6.800e+01;SOR=0.404;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:31:99:370,0,472
1	145014411	rs1778707	T	C	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.291;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.58;ReadPosRankSum=1.352;SB=-3.501e+01;SOR=0.527;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:305,0,372
1	145015877	rs77741369	G	T	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.323;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.969;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.22;ReadPosRankSum=1.888;SB=-1.320e+02;SOR=0.925;VQSLOD=4.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:93,19:112:99:389,0,2603
1	145016020	rs657162	T	G	2376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-7.640e+02;SOR=2.082;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2405,175,0
1	145016035	rs80291027	A	C	327.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.664;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.9924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.262;SB=-8.400e+01;SOR=0.661;VQSLOD=6.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,14:53:99:356,0,1232
1	145018023	rs2799192	G	T	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.870;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.186;SB=-2.180e+02;SOR=0.574;VQSLOD=6.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,15:37:99:329,0,700
1	145018102	.	G	GAGAA	533.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;RPA=1,2;RU=AGAA;ReadPosRankSum=1.156;SB=-5.500e+01;SOR=1.022;STR;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,10:27:99:571,0,1002
1	145020936	rs1778693	A	G	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.99;ReadPosRankSum=-0.089;SB=0.00;SOR=0.512;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:208,0,322
1	145021024	rs1778692	G	C	578.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.242;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.7587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.785;SB=-1.330e+02;SOR=0.701;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,21:51:99:607,0,867
1	145021034	rs674066	C	A	123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.023;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.7587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.29;ReadPosRankSum=1.057;SB=-6.193e+00;SOR=1.061;VQSLOD=3.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,9:54:99:152,0,1330
1	145021265	rs673110	A	G	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.190;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=6.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.315;SB=-2.100e+02;SOR=0.197;VQSLOD=4.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:69,17:86:99:326,0,2128
1	145038736	rs1663882	C	G	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.98;ReadPosRankSum=1.940;SB=0.00;SOR=0.412;VQSLOD=7.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:99:118,0,197
1	145038815	rs2442664	A	G	832.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.057;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.91;ReadPosRankSum=0.467;SB=-3.330e+02;SOR=1.445;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,33:38:80:861,0,80
1	145038952	rs1663881	C	T	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.608;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.876;SB=-3.110e+02;SOR=0.690;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,24:67:99:660,0,1225
1	145039026	rs1663880	T	C	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.156;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.024;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.18;ReadPosRankSum=-2.097;SB=-7.300e+01;SOR=1.244;VQSLOD=5.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,13:44:99:344,0,879
1	145039562	rs1663878	C	T	814.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.841;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.109;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-0.079;SB=-2.270e+02;SOR=0.990;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,32:65:99:843,0,960
1	145039744	rs367568901	C	A	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=3.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-1.193;SB=-9.000e+01;SOR=0.256;VQSLOD=3.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:64,12:76:99:184,0,1798
1	145039821	rs7554603	C	A	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.068;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.117;SB=-1.765e+00;SOR=0.238;VQSLOD=7.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,6:33:99:151,0,848
1	145039831	rs1343582	A	G	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.645;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.34;ReadPosRankSum=-1.514;SB=-1.765e+00;SOR=1.402;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:444,0,508
1	145074939	rs1663854	T	C	1332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.562;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.652;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-1.114;SB=-5.640e+02;SOR=0.601;VQSLOD=4.76;culprit=DP	GT:AD:DP:GQ:PL	0/1:98,56:154:99:1361,0,2723
1	145075208	rs6424335	T	A	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.113;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.91;ReadPosRankSum=1.733;SB=-3.401e+01;SOR=0.749;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,19:37:99:580,0,556
1	145075519	rs2596337	G	C	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.628;SB=-1.765e+00;SOR=1.371;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:167,0,184
1	145075683	rs2762779	C	T	708.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-0.124;SB=-2.570e+02;SOR=0.622;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,25:64:99:737,0,1113
1	145075854	rs1663853	G	C	1583.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.277;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.657;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-0.709;SB=-9.310e+02;SOR=0.793;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:65,64:129:99:1612,0,1717
1	145075903	rs2596336	C	T	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.962;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.945;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.32;ReadPosRankSum=1.149;SB=-1.200e+02;SOR=0.284;VQSLOD=4.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:74,13:87:99:230,0,2208
1	145075923	rs6656135	C	T	714.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.679;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-1.757;SB=-1.870e+02;SOR=0.724;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,26:67:99:743,0,1316
1	145103844	rs2590144	G	A	814.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.910;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.111;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.15;ReadPosRankSum=0.050;SB=-1.420e+02;SOR=0.473;VQSLOD=5.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:82,32:114:99:843,0,2566
1	145103928	rs2596251	G	A	549.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.324;DB;DP=223;Dels=0.00;ExcessHet=3.0103;FS=2.337;HaplotypeScore=2.7861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.109;SB=-2.190e+02;SOR=0.944;VQSLOD=0.908;culprit=DP	GT:AD:DP:GQ:PL	0/1:187,36:223:99:578,0,5373
1	145103947	rs2794062	T	C	1682.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=12.876;DB;DP=230;Dels=0.00;ExcessHet=3.0103;FS=3.234;HaplotypeScore=6.5575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.32;ReadPosRankSum=0.541;SB=-9.410e+02;SOR=0.901;VQSLOD=2.69;culprit=DP	GT:AD:DP:GQ:PL	0/1:161,69:230:99:1711,0,4349
1	145104052	rs3977171	AGT	A	1831.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DB;DP=150;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;RPA=2,1;RU=GT;ReadPosRankSum=0.931;SB=-4.150e+02;SOR=0.576;STR;VQSLOD=6.96;culprit=DP	GT:AD:DP:GQ:PL	0/1:99,46:150:99:1869,0,4669
1	145109312	rs11370361	C	CA	101.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.27;RPA=10,11;RU=A;ReadPosRankSum=-0.433;SB=0.00;SOR=0.693;STR;VQSLOD=9.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,7:14:99:139,0,126
1	145109430	rs2442653	A	T	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.667;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.386;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.153;SB=-1.611e+01;SOR=1.022;VQSLOD=4.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:74,16:90:99:338,0,2178
1	145109456	rs7553975	C	T	1001.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.638;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=5.427;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.77;ReadPosRankSum=1.563;SB=-4.140e+02;SOR=0.335;VQSLOD=4.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:88,41:129:99:1030,0,2741
1	145109468	rs2442652	A	G	3566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.684;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=2.294;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.66;ReadPosRankSum=-0.066;SB=-1.253e+03;SOR=0.420;VQSLOD=3.38;culprit=DP	GT:AD:DP:GQ:PL	0/1:20,119:139:99:3595,0,302
1	145109493	rs2442651	C	T	804.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.468;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=4.918;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-0.662;SB=-1.730e+02;SOR=1.206;VQSLOD=3.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:137,37:174:99:833,0,4066
1	145109549	rs2596331	G	T	1096.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-11.982;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.453;SB=-6.310e+02;SOR=0.821;VQSLOD=0.323;culprit=DP	GT:AD:DP:GQ:PL	0/1:191,59:250:99:1125,0,5438
1	145109583	rs2794053	C	A	2865.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.828;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=5.921;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.46;ReadPosRankSum=0.351;SB=-1.689e+03;SOR=0.881;VQSLOD=3.20;culprit=DP	GT:AD:DP:GQ:PL	0/1:133,117:250:99:2894,0,3604
1	145109661	rs2655551	G	A	688.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;DB;DP=194;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.2660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.984;SB=-2.550e+02;SOR=0.707;VQSLOD=2.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:158,36:194:99:717,0,4472
1	145109809	rs2596327	T	A	82.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.623;SB=0.00;SOR=0.120;VQSLOD=8.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,4:17:99:111,0,420
1	145112287	rs2794042	T	C	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.671;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-0.874;SB=0.00;SOR=0.132;VQSLOD=8.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:146,0,511
1	145112414	rs2590131	T	C	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.376;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=26.6559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.234;SB=-1.480e+02;SOR=0.751;VQSLOD=3.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:115,24:139:99:417,0,3193
1	145112420	rs2794041	C	T	819.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=6.315;HaplotypeScore=51.5155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.81;ReadPosRankSum=-0.309;SB=-2.500e+02;SOR=1.332;VQSLOD=4.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:104,37:142:99:848,0,2811
1	145112428	rs2794040	C	T	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.011;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=28.5234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.415;SB=-1.850e+02;SOR=0.789;VQSLOD=3.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:123,25:149:99:429,0,3401
1	145112485	rs2794039	C	T	481.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.192;SB=-2.970e+02;SOR=0.767;VQSLOD=3.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:129,29:158:99:510,0,3351
1	145115810	rs2655557	A	G	1387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=2.085;HaplotypeScore=27.7099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.19;ReadPosRankSum=0.010;SB=-8.000e+02;SOR=0.776;VQSLOD=5.28;culprit=DP	GT:AD:DP:GQ:PL	0/1:91,60:151:99:1416,0,2444
1	145115820	rs2655558	T	C	567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=4.774;HaplotypeScore=28.6431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-0.210;SB=-3.070e+02;SOR=1.156;VQSLOD=3.63;culprit=QD	GT:AD:DP:GQ:PL	0/1:119,33:152:99:596,0,3327
1	145116027	rs7550440	T	C	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.040;SB=0.00;SOR=0.283;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:20:99:203,0,438
1	145209612	.	GCCCCGCCAACCGCCGGGGTT	G	3439.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.97;MQ0=0;MQRankSum=0.485;POSITIVE_TRAIN_SITE;QD=28.66;RPA=3,2;RU=CCCCGCCAACCGCCGGGGTT;ReadPosRankSum=-1.254;SB=-6.933e+02;SOR=1.085;STR;VQSLOD=3.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,17:29:99:3477,0,167
1	145277430	rs77938685	T	C	194.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=1;QD=19.48;SB=-1.245e+02;SOR=1.402;VQSLOD=3.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:223,18,0
1	145277457	rs78018144	A	G	194.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=1;QD=19.48;SB=-1.065e+02;SOR=1.402;VQSLOD=3.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:223,18,0
1	145281203	rs147993620	G	A	419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.447;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.40;MQ0=5;MQRankSum=1.052;QD=5.91;ReadPosRankSum=-1.283;SB=0.00;SOR=0.122;VQSLOD=0.984;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,17:71:99:448,0,1688
1	145282093	rs199946317	G	A	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.758;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=-4.417;QD=5.90;ReadPosRankSum=1.058;SB=-3.000e+01;SOR=0.249;VQSLOD=0.539;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,11:43:99:282,0,1091
1	145290317	rs77985488	C	T	56.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.227;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=-1.643;QD=4.37;ReadPosRankSum=1.352;SB=0.00;SOR=0.124;VQSLOD=1.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:85:85,0,360
1	145290320	rs2949607	C	T	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=-0.674;QD=14.91;ReadPosRankSum=1.062;SB=0.00;SOR=0.693;VQSLOD=2.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:237,0,241
1	145290351	.	A	G	74.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9988;MLEAC=1;MLEAF=0.500;MQ=56.89;MQ0=0;MQRankSum=0.281;QD=3.56;ReadPosRankSum=0.358;SB=-5.150e-01;SOR=1.022;VQSLOD=1.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:21:99:103,0,546
1	145290377	.	T	C	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=58.15;MQ0=0;MQRankSum=-3.110;QD=12.97;ReadPosRankSum=-0.649;SB=-1.650e+02;SOR=0.473;VQSLOD=1.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,18:36:99:495,0,516
1	145290401	rs77093221	T	G	272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9984;MLEAC=1;MLEAF=0.500;MQ=58.04;MQ0=0;MQRankSum=-4.838;QD=5.93;ReadPosRankSum=-0.812;SB=-8.800e+01;SOR=0.610;VQSLOD=0.149;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,14:46:99:301,0,946
1	145290409	rs77693292	G	A	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.476;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.27;MQ0=0;MQRankSum=-4.510;QD=6.65;ReadPosRankSum=-1.112;SB=-1.550e+02;SOR=0.610;VQSLOD=2.600e-03;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,17:52:99:374,0,1019
1	145290547	rs77744531	C	A	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.604;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9948;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=-5.003;QD=4.70;ReadPosRankSum=0.152;SB=-8.400e+01;SOR=0.563;VQSLOD=0.068;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,10:41:99:221,0,896
1	145290553	.	C	T	83.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9948;MLEAC=1;MLEAF=0.500;MQ=57.42;MQ0=0;MQRankSum=1.321;QD=2.33;ReadPosRankSum=0.828;SB=-1.417e+01;SOR=0.866;VQSLOD=1.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,6:36:99:112,0,907
1	145293667	rs6689039	T	G	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.864;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.58;MQ0=2;MQRankSum=-1.780;QD=3.78;ReadPosRankSum=0.538;SB=-2.302e+01;SOR=0.245;VQSLOD=1.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,11:55:99:236,0,1275
1	145296207	rs71246524	T	C	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.20;MQ0=0;MQRankSum=-2.839;QD=13.10;ReadPosRankSum=-1.356;SB=0.00;SOR=0.693;VQSLOD=1.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:264,0,299
1	145296372	.	A	G	1132.77	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=3;QD=28.32;SB=-5.350e+02;SOR=1.270;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:84:1161,84,0
1	145296654	rs4068117	G	A	72.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.404;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=41.49;MQ0=1;MQRankSum=-1.428;QD=4.28;ReadPosRankSum=1.984;SB=-1.709e+01;SOR=0.804;VQSLOD=1.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:101,0,284
1	145296675	rs199792864	A	G	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.196;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9531;MLEAC=1;MLEAF=0.500;MQ=45.23;MQ0=0;MQRankSum=-0.803;QD=3.25;ReadPosRankSum=0.217;SB=-9.732e-01;SOR=0.784;VQSLOD=1.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:15:77:77,0,263
1	145297817	.	G	C	1035.77	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=29.73;SB=-1.185e+02;SOR=3.690;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:1064,78,0
1	145301907	rs6697832	A	C	55.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.830;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8660;MLEAC=1;MLEAF=0.500;MQ=40.10;MQ0=3;MQRankSum=-2.055;QD=2.07;ReadPosRankSum=0.142;SB=-9.732e-01;SOR=0.693;VQSLOD=1.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,6:28:84:84,0,551
1	145310197	.	C	T	1066.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.317;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.85;MQ0=2;MQRankSum=-4.996;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=1.141;SB=-3.450e+02;SOR=0.612;VQSLOD=1.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,43:66:99:1095,0,630
1	145310983	rs116247129	G	C	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=46.52;MQ0=0;MQRankSum=-3.227;QD=7.60;ReadPosRankSum=-1.554;SB=-8.100e+01;SOR=0.965;VQSLOD=0.793;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,19:43:99:355,0,759
1	145311380	rs4649547	C	A	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.303;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.91;MQ0=0;MQRankSum=0.180;QD=15.32;ReadPosRankSum=0.247;SB=0.00;SOR=0.784;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,11:21:99:350,0,291
1	145311828	rs12135693	C	G	1044.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.24;SB=-7.010e+02;SOR=0.859;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:75:1073,75,0
1	145367083	rs10910796	G	C	35.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.19;MQ0=1;MQRankSum=-0.591;QD=2.75;ReadPosRankSum=-0.265;SB=-9.732e-01;SOR=0.946;VQSLOD=1.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:64:64,0,150
1	145367657	rs147722843	T	G	102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.37;MQ0=0;MQRankSum=0.173;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=-0.490;SB=-5.800e+01;SOR=0.693;VQSLOD=2.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:12:99:131,0,157
1	145368837	rs7414890	C	A	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=47.56;MQ0=0;MQRankSum=0.263;QD=14.10;ReadPosRankSum=-0.611;SB=0.00;SOR=0.593;VQSLOD=2.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:268,0,300
1	145368871	rs7416122	A	G	440.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;QD=25.96;SB=0.00;SOR=5.136;VQSLOD=4.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:469,36,0
1	145440921	rs142683989	T	C	1547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=5.779;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.677;SB=-8.500e+02;SOR=1.024;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,62:118:99:1576,0,1434
1	145440941	rs72563166	G	A	1550.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=2.442;HaplotypeScore=2.4947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-1.048;SB=-9.070e+02;SOR=0.861;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,61:114:99:1579,0,1304
1	145457677	rs66512364	A	AG	329.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=1.388;POSITIVE_TRAIN_SITE;QD=9.16;RPA=6,7;RU=G;ReadPosRankSum=0.362;SB=-8.500e+01;SOR=0.562;STR;VQSLOD=3.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,13:42:99:367,0,693
1	145459902	rs6658276	G	A	585.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.567;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=0.725;SB=-2.760e+02;SOR=0.986;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,21:30:99:614,0,221
1	145460000	rs6672807	A	G	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=0.233;SB=-8.297e+01;SOR=0.105;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:212,0,157
1	145507826	rs872786	A	T	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.264;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=0.592;SB=-3.540e+02;SOR=0.766;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,24:39:99:684,0,421
1	145508146	rs59285351	C	A	1022.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.638;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=7.701;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=0.511;SB=-5.790e+02;SOR=0.236;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,38:80:99:1051,0,1243
1	145515979	rs77879391	C	G	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-0.507;SB=-2.501e+01;SOR=1.085;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,7:19:99:230,0,379
1	145516177	rs78764825	G	A	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-1.935;SB=-3.200e+01;SOR=1.445;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:166,0,175
1	145516514	rs79534266	T	C	932.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=2.218;SB=-4.540e+02;SOR=0.632;VQSLOD=7.88;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,35:68:99:961,0,778
1	145517063	rs10910821	G	A	458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.279;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-1.172;SB=-4.176e+01;SOR=0.287;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:487,0,407
1	145522423	rs71803934	T	TTG	362.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.23;RPA=1,2;RU=TG;ReadPosRankSum=0.611;SB=-5.476e+01;SOR=0.818;STR;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:99:400,0,99
1	145524903	rs149835973	C	T	494.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.613;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=0.537;SB=0.00;SOR=1.270;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:523,0,299
1	145527604	rs2274620	A	G	1308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.826;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.761;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.498;SB=-6.190e+02;SOR=0.850;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,50:103:99:1337,0,1331
1	145531980	rs4384171	T	C	1415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.51;SB=-5.700e+02;SOR=1.329;VQSLOD=5.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:39:99:1444,108,0
1	145532549	rs1328584	T	C	3669.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-2.131e+03;SOR=0.881;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3698,265,0
1	145535611	rs4970851	T	G	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.023;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.406;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.599;SB=-1.790e+02;SOR=0.476;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:560,0,527
1	145535921	rs2274617	T	C	2106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.712;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=1.364;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-0.584;SB=-1.238e+03;SOR=0.527;VQSLOD=7.83;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,71:136:99:2135,0,1844
1	145538664	rs1109216	A	G	641.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.246;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.968;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=-1.328;SB=-3.370e+02;SOR=0.557;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,28:68:99:670,0,1157
1	145555653	rs6424379	C	T	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.864;HaplotypeScore=4.3175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.83;ReadPosRankSum=-1.767;SB=-2.440e+02;SOR=0.874;VQSLOD=6.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,30:96:99:684,0,1673
1	145557429	rs111690905	C	G	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=-0.263;SB=0.00;SOR=0.859;VQSLOD=10.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:209,0,171
1	145558565	rs11801520	C	G	1403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-3.220e+02;SOR=2.670;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1432,105,0
1	145562087	rs41315701	G	A	624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=7.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-1.882;SB=-3.000e+02;SOR=0.353;VQSLOD=6.47;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,23:54:99:653,0,943
1	145562293	rs11579366	G	C	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.526;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.968;HaplotypeScore=1.7719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.225;SB=-3.520e+02;SOR=0.439;VQSLOD=7.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,25:72:99:694,0,1304
1	145567084	rs16827032	A	G	984.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.766;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=4.812;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=2.006;SB=-5.380e+02;SOR=0.727;VQSLOD=7.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,36:67:99:1013,0,850
1	145576115	TMP_ESP_1_145576115	TC	T	144.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.13;RPA=6,5;RU=C;ReadPosRankSum=-1.562;SB=-9.100e+01;SOR=0.495;STR;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:182,0,227
1	145577985	rs139610738	T	G	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.354;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.795;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=1.729;SB=-6.200e+01;SOR=1.414;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,19:39:99:541,0,565
1	145585135	rs113755297	C	T	298.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=6.990;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=1.645;SB=-3.301e+01;SOR=3.020;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,9:10:6:326,0,6
1	145585317	rs4128488	A	G	1566.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-8.390e+02;SOR=0.919;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1595,123,0
1	145585518	rs112103191	A	C	839.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.813;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.746;SB=-3.650e+02;SOR=0.885;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,31:66:99:868,0,958
1	145586403	rs1050057	G	T	360.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=0.00;SOR=4.804;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:389,30,0
1	145586839	rs16827062	C	T	1763.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.425;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=2.960;HaplotypeScore=3.2707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.721;SB=-9.760e+02;SOR=0.930;VQSLOD=7.13;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,68:145:99:1792,0,1962
1	145588184	rs2004659	T	C	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.201;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.754;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.83;ReadPosRankSum=0.450;SB=-2.657e-01;SOR=1.675;VQSLOD=6.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,4:19:99:120,0,391
1	145588536	rs9286836	C	T	468.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.751;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=-0.789;SB=-2.150e+02;SOR=0.743;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,18:50:99:497,0,940
1	145589491	rs1887804	A	T	557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-4.997e+01;SOR=3.383;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:586,48,0
1	145597116	rs9728311	C	T	1341.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-6.330e+02;SOR=1.055;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1370,105,0
1	145598459	rs9729715	T	C	2234.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-1.111e+03;SOR=1.000;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2263,166,0
1	145601861	rs9286837	G	A	2069.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-4.970e+02;SOR=2.412;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2098,157,0
1	145683334	rs34695381	G	C	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.511;SB=0.00;SOR=0.412;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:138,0,167
1	145696694	rs2231375	G	A	165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.752;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.755;SB=-5.200e+01;SOR=1.153;VQSLOD=7.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:194,0,322
1	145826770	rs34955113	G	A	610.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.243;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=1.193;SB=-1.670e+02;SOR=0.976;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,22:50:99:639,0,894
1	146013577	rs145151412	A	C	2129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.892;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=3.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.08;MQ0=4;MQRankSum=-1.331;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=-0.190;SB=-1.036e+03;SOR=0.389;VQSLOD=0.079;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,76:100:99:2158,0,581
1	146493279	rs3929735	C	T	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=52.42;MQ0=0;MQRankSum=-4.192;QD=8.95;ReadPosRankSum=0.061;SB=-4.900e+01;SOR=1.165;VQSLOD=0.836;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,8:24:99:243,0,493
1	146493280	rs3929736	A	G	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.524;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=52.42;MQ0=0;MQRankSum=-4.307;QD=10.74;ReadPosRankSum=-0.597;SB=-8.200e+01;SOR=0.648;VQSLOD=0.844;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,9:24:99:286,0,453
1	146496460	.	G	A	961.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.343;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-0.019;SB=-5.430e+02;SOR=0.752;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,40:81:99:990,0,1103
1	146515859	rs11332586	TA	T	80.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.73;RPA=15,14;RU=A;ReadPosRankSum=1.524;SB=-2.777e+01;SOR=0.293;STR;VQSLOD=9.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,7:13:96:118,0,96
1	146522857	rs671690	A	G	232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.761;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=6.560;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=0.142;SB=-1.680e+02;SOR=0.039;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:261,0,124
1	146549478	rs492243	G	A	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.77;ReadPosRankSum=-1.640;SB=-4.700e+01;SOR=0.784;VQSLOD=8.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,5:23:99:115,0,446
1	146549527	.	C	T	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.40;ReadPosRankSum=1.260;SB=-1.227e+01;SOR=1.049;VQSLOD=4.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:86:86,0,341
1	146549553	rs74490826	G	A	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.622;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.86;ReadPosRankSum=1.032;SB=-4.900e+01;SOR=0.148;VQSLOD=5.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:90:90,0,338
1	146576094	rs4950368	C	A	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=0.079;SB=0.00;SOR=0.269;VQSLOD=9.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:118,0,289
1	146576120	rs4950369	G	C	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-0.675;SB=-5.150e-01;SOR=2.303;VQSLOD=6.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:164,0,258
1	146576122	rs4950370	T	C	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.367;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=-1.193;SB=-2.203e+01;SOR=1.179;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:174,0,258
1	146576133	rs6593735	C	G	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=-0.976;SB=-2.901e+01;SOR=1.179;VQSLOD=9.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:168,0,261
1	146583568	rs6686480	G	A	193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.295;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-0.578;SB=-1.330e+02;SOR=0.877;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:222,0,217
1	146583569	rs6700783	A	T	193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-0.578;SB=-1.330e+02;SOR=0.877;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:222,0,216
1	146585825	rs4950371	G	A	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-1.091;SB=-3.580e+02;SOR=0.616;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,22:45:99:529,0,562
1	146592787	rs55697094	T	C	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=1.686;SB=-9.100e+01;SOR=1.179;VQSLOD=6.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,8:24:99:221,0,395
1	146633933	rs1036852	G	A	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=7.509;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=0.437;SB=-5.900e+01;SOR=2.733;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:431,0,245
1	146643555	rs1348316	A	G	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=-0.403;SB=-8.100e+01;SOR=0.330;VQSLOD=7.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:161,0,295
1	146656292	rs4950385	A	G	622.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.685;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.171;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.386;SB=-1.930e+02;SOR=1.035;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,23:53:99:651,0,812
1	146672906	rs894469	C	T	1100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=2.506;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.110;SB=-5.450e+02;SOR=0.970;VQSLOD=7.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:71,42:113:99:1129,0,1997
1	146673178	rs6683215	A	G	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.345;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=-0.053;SB=-9.732e-01;SOR=1.238;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,11:35:99:349,0,785
1	146680262	rs2354433	A	G	662.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.605;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=-1.819;SB=-1.040e+02;SOR=1.255;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,21:35:99:691,0,392
1	146685121	rs1530336	G	A	895.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.301;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=4.083;HaplotypeScore=2.7318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.016;SB=-4.140e+02;SOR=0.314;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,36:59:99:924,0,620
1	146687250	rs1822312	A	T	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.044;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.168;SB=-1.765e+00;SOR=1.609;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:235,0,259
1	146714392	rs1890042	G	T	153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.542;SB=-1.060e+02;SOR=0.595;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:182,0,124
1	147083744	rs677977	C	T	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=0.504;SB=-1.860e+02;SOR=0.715;VQSLOD=9.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,18:47:99:431,0,832
1	147085066	rs35669952	G	A	700.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=-0.548;SB=-1.690e+02;SOR=1.329;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,24:34:99:729,0,245
1	147086504	rs7512513	A	C	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.694;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.828;SB=-6.200e+01;SOR=0.693;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:349,0,350
1	147096044	.	G	C	1985.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.602;DP=145;Dels=0.00;ExcessHet=3.0103;FS=2.939;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.69;ReadPosRankSum=-0.491;SB=-1.184e+03;SOR=0.490;VQSLOD=6.02;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,69:145:99:2014,0,2194
1	147096794	rs867270	A	G	1466.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.97;SB=-2.890e+02;SOR=3.003;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1495,108,0
1	147096828	rs946902	C	G	901.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-7.497e+01;SOR=4.091;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:930,69,0
1	147119273	rs1344	G	A	793.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.282;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=0.406;SB=-4.270e+02;SOR=0.655;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,30:56:99:822,0,573
1	147121977	rs6593795	C	T	2273.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-9.030e+02;SOR=1.508;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2302,172,0
1	147124310	rs2153463	T	G	1117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.432;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.872;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-0.510;SB=-5.590e+02;SOR=0.816;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,45:79:99:1146,0,903
1	147131465	rs6674938	T	C	975.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.665;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.559;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-1.566;SB=-4.600e+02;SOR=0.357;VQSLOD=8.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,34:66:99:1004,0,913
1	147131945	rs2275552	T	C	540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.564;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.083;SB=-6.400e+01;SOR=0.846;VQSLOD=10.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:569,0,370
1	147142296	rs2883202	T	C	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.199;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=1.014;SB=-6.600e+01;SOR=1.473;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:402,0,161
1	147230217	rs1692141	T	C	2223.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-7.220e+02;SOR=2.105;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2252,166,0
1	147313488	rs61998237	A	G	629.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.852;SB=-3.680e+02;SOR=0.791;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:658,0,920
1	147381444	rs1532399	A	C	1516.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-2.251e+02;SOR=3.109;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1545,114,0
1	147381558	rs2132397	G	A	314.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-4.176e+01;SOR=3.258;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:343,27,0
1	147706592	rs139101841	A	C	35.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.184;SB=-2.203e+01;SOR=0.889;VQSLOD=4.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:64:64,0,179
1	147806559	rs10752439	C	T	1614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-3.190e+02;SOR=3.171;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1643,126,0
1	147806874	rs2999607	G	C	1002.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-8.197e+01;SOR=4.407;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1031,78,0
1	147806880	rs537191	T	C	928.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.57;SB=-4.276e+01;SOR=5.058;VQSLOD=4.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:957,72,0
1	148009141	.	A	G	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.65;MQ0=1;MQRankSum=0.967;QD=9.25;ReadPosRankSum=-1.483;SB=0.00;SOR=0.412;VQSLOD=1.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:130,0,206
1	148009510	rs1127394	G	A	921.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=3.126;HaplotypeScore=2.7819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.60;ReadPosRankSum=0.247;SB=-2.720e+02;SOR=1.179;VQSLOD=6.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,38:96:99:950,0,1536
1	148252264	.	A	T	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.55;MQ0=1;MQRankSum=-3.858;QD=3.26;ReadPosRankSum=1.003;SB=0.00;SOR=0.193;VQSLOD=1.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,6:18:87:87,0,383
1	148346495	rs200733391	AATT	A	474.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=0;MQRankSum=-0.134;POSITIVE_TRAIN_SITE;QD=19.78;RPA=2,1;RU=ATT;ReadPosRankSum=0.957;SB=-1.370e+02;SOR=0.512;STR;VQSLOD=3.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,11:24:99:512,0,690
1	148873574	rs74545317	G	T	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.658;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6774;MLEAC=1;MLEAF=0.500;MQ=47.93;MQ0=1;MQRankSum=-0.168;QD=5.03;ReadPosRankSum=-0.571;SB=-7.000e+01;SOR=0.616;VQSLOD=1.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,16:57:99:315,0,981
1	148889543	.	AT	A	523.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.54;MQ0=0;MQRankSum=-4.633;QD=14.15;RPA=8,7;RU=T;ReadPosRankSum=0.782;SB=-1.520e+02;SOR=0.804;STR;VQSLOD=0.787;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,26:38:99:561,0,202
1	148889551	rs71268402	TAA	T	238.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.31;MQ0=0;MQRankSum=4.320;QD=6.28;RPA=7,5;RU=A;ReadPosRankSum=0.216;SB=-8.700e+01;SOR=0.693;STR;VQSLOD=0.858;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,10:39:99:276,0,1004
1	148889747	rs374904270	A	G	56.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.844;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.39;MQ0=0;MQRankSum=-0.480;QD=4.05;ReadPosRankSum=0.935;SB=0.00;SOR=0.105;VQSLOD=1.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:85:85,0,339
1	148889778	rs61788508	T	C	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.95;MQ0=0;MQRankSum=-0.431;QD=10.98;ReadPosRankSum=1.036;SB=0.00;SOR=0.412;VQSLOD=1.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:138,0,154
1	148902312	rs151006	G	A	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=42.13;MQ0=2;MQRankSum=-1.655;QD=4.51;ReadPosRankSum=0.351;SB=-4.900e+01;SOR=0.804;VQSLOD=1.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,8:21:99:123,0,350
1	148902392	rs2531506	G	A	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.057;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=41.29;MQ0=4;MQRankSum=-4.888;QD=8.62;ReadPosRankSum=1.195;SB=-7.400e+01;SOR=1.051;VQSLOD=0.270;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,18:33:99:304,0,423
1	149039031	rs11588033	T	C	641.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.774;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.484;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=0.548;SB=-3.510e+02;SOR=0.386;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,26:37:99:670,0,320
1	149039120	rs11579261	C	T	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=1.440;SB=-7.597e+01;SOR=0.223;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:92:212,0,92
1	149049274	rs34725262	A	G	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.364;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=-0.933;SB=0.00;SOR=0.250;VQSLOD=9.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:215,0,482
1	149049485	rs12741994	G	T	1022.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.802;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.798;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-0.367;SB=-4.860e+02;SOR=0.919;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,41:96:99:1051,0,1590
1	149059969	rs72704365	G	A	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.379;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.269;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.953;SB=-5.400e+01;SOR=1.828;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:247,0,256
1	149062949	rs112411080	A	G	56.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.15;ReadPosRankSum=-1.488;SB=-2.203e+01;SOR=0.892;VQSLOD=8.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:18:85:85,0,370
1	149062982	rs114520083	A	C	47.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.914;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.39;ReadPosRankSum=0.583;SB=-1.709e+01;SOR=0.784;VQSLOD=8.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,3:20:76:76,0,486
1	149089962	rs1849365	A	C	471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.273;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-0.642;SB=-1.350e+02;SOR=2.179;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:500,0,304
1	149105999	rs13376441	G	T	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.43;ReadPosRankSum=0.705;SB=-5.800e+01;SOR=1.329;VQSLOD=6.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,6:18:99:162,0,327
1	149242396	.	A	G	358.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.61;ReadPosRankSum=1.005;SB=-7.397e+01;SOR=0.914;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,12:14:7:386,0,7
1	149288166	rs17162066	G	A	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.53;MQ0=4;MQRankSum=0.726;QD=4.71;ReadPosRankSum=-0.116;SB=-1.000e+02;SOR=0.701;VQSLOD=1.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,12:53:99:278,0,1016
1	149379694	rs79328769	C	T	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.65;MQ0=0;MQRankSum=-1.030;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.154;SB=-9.400e+01;SOR=0.693;VQSLOD=2.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:172,0,139
1	149398947	rs200680677	G	A	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.83;MQ0=0;MQRankSum=1.288;QD=12.74;ReadPosRankSum=0.988;SB=-1.700e+02;SOR=0.721;VQSLOD=2.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:283,0,237
1	149665167	rs588242	A	G	4734.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=5;POSITIVE_TRAIN_SITE;QD=32.88;SB=-1.693e+03;SOR=1.714;VQSLOD=5.65;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4763,349,0
1	149665430	rs201539226	T	C	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.743;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.42;MQ0=4;MQRankSum=-0.378;QD=4.07;ReadPosRankSum=1.619;SB=-7.500e+01;SOR=0.374;VQSLOD=0.489;culprit=QD	GT:AD:DP:GQ:PL	0/1:64,16:80:99:354,0,1629
1	149876665	rs13067	G	A	1104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.764;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-0.485;SB=-6.590e+02;SOR=0.702;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,45:98:99:1133,0,1432
1	149879066	.	G	C	64.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.48;ReadPosRankSum=0.000;SB=0.00;SOR=0.223;VQSLOD=7.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:93:93,0,244
1	149902311	.	C	T	870.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.597;DP=74;Dels=0.00;ExcessHet=3.0103;FS=5.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.77;ReadPosRankSum=0.038;SB=-4.440e+02;SOR=1.064;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,35:74:99:899,0,1060
1	149906413	rs11205303	T	C	1175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.021;SB=-5.690e+02;SOR=0.656;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,45:77:99:1204,0,911
1	150053397	.	CT	C	848.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=1.186;QD=13.06;RPA=9,8;RU=T;ReadPosRankSum=-1.212;SB=-2.760e+02;SOR=0.713;STR;VQSLOD=1.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,39:65:99:886,0,591
1	150115398	rs12138231	T	A	366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=0.00;SOR=4.804;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:395,30,0
1	150128425	rs1545762	C	T	951.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-2.421e+02;SOR=2.621;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:980,72,0
1	150129267	rs10749675	G	A	851.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;SB=-7.997e+01;SOR=4.091;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:880,69,0
1	150199039	rs68136184	CTCCTCT	C	1139.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.52;RPA=2,1;RU=TCCTCT;SB=-3.433e+02;SOR=1.765;STR;VQSLOD=6.10;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,14:14:42:1177,42,0
1	150199123	rs7522034	G	T	924.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=-2.371e+02;SOR=2.387;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:953,69,0
1	150203984	rs113913866	AT	A	409.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=0.00;SOR=4.804;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:30:447,30,0
1	150241230	rs2275780	G	T	1254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.802;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=-1.010;SB=-3.720e+02;SOR=0.562;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,43:66:99:1283,0,600
1	150249101	rs11205354	C	A	1065.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-1.951e+02;SOR=3.056;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1094,81,0
1	150258838	rs1122967	C	G	1259.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-2.800e+02;SOR=2.712;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1288,93,0
1	150259400	rs9126	A	C	1698.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-4.330e+02;SOR=2.348;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1727,126,0
1	150276429	rs471738	G	A	1255.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=-2.620e+02;SOR=2.712;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1284,96,0
1	150276461	rs471657	G	A	883.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-2.011e+02;SOR=2.670;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:912,66,0
1	150281202	rs580060	A	C	759.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-8.297e+01;SOR=3.816;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:788,57,0
1	150284493	rs60639251	TA	T	388.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;RPA=2,1;RU=A;SB=0.00;SOR=4.804;STR;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:426,30,0
1	150444026	rs117341696	G	A	1483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.597;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-0.258;SB=-6.740e+02;SOR=1.035;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,52:102:99:1512,0,1383
1	150445282	rs201545993	T	A	540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.402;SB=-2.990e+02;SOR=0.801;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,20:43:99:569,0,593
1	150469480	rs12119249	C	T	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.785;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.486;SB=-7.897e+01;SOR=0.069;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:368,0,434
1	150526044	rs41317515	G	C	3132.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-1.727e+03;SOR=0.738;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3161,232,0
1	150528090	rs66703603	G	GACAC	4149.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;RPA=2,4;RU=AC;SB=-1.759e+03;SOR=1.071;STR;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:68:99:4187,181,0
1	150528118	rs67907755	T	TACAC	3352.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;RPA=3,5;RU=AC;SB=-8.970e+02;SOR=2.124;STR;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:56:99:3390,151,0
1	150528175	rs35233292	GCA	G	1758.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;RPA=2,1;RU=CA;SB=-1.605e+02;SOR=4.174;STR;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:37:99:1796,102,0
1	150528208	rs9728540	C	T	519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.103;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.965;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.56;ReadPosRankSum=-0.848;SB=-8.097e+01;SOR=0.180;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:548,0,325
1	150529322	rs67767989	T	TAA	897.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.30;SB=-4.660e+02;SOR=0.693;VQSLOD=3.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:17:48:935,48,0
1	150530040	rs368952263	C	T	653.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.430;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.996;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-1.087;SB=-3.510e+02;SOR=0.495;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,26:64:99:682,0,1123
1	150530266	.	GCTGAGC	G	527.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.49;ReadPosRankSum=0.357;SB=-7.300e+01;SOR=1.371;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:20:99:565,0,720
1	150531008	rs10888382	T	C	2479.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-1.014e+03;SOR=1.525;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2508,184,0
1	150531050	rs10749657	G	A	3012.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-1.484e+03;SOR=1.132;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3041,226,0
1	150531170	rs10749658	C	T	2727.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-1.348e+03;SOR=1.192;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2756,205,0
1	150531380	rs11204664	T	C	579.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-2.950e+02;SOR=0.804;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:608,48,0
1	150550019	.	T	TA	1564.73	PASS	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;RPA=1,2;RU=A;SB=-3.610e+02;SOR=2.432;STR;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:37:99:1602,108,0
1	150595537	rs11204682	G	T	152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=0.760;SB=-2.501e+01;SOR=1.179;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:181,0,260
1	150635869	rs6661415	G	A	54.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.48;ReadPosRankSum=-1.440;SB=0.00;SOR=0.223;VQSLOD=9.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:83:83,0,259
1	150671243	rs139837908	AC	A	192.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.88;ReadPosRankSum=-0.080;SB=-1.020e+02;SOR=0.498;VQSLOD=8.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,7:28:99:230,0,928
1	150676674	rs367543855	TA	T	92.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;DB;DP=42;ExcessHet=3.0103;FS=3.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.51;RPA=17,16;RU=A;ReadPosRankSum=-0.667;SB=-2.801e+01;SOR=1.501;STR;VQSLOD=4.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,10:42:99:130,0,537
1	150678910	rs1336899	T	C	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-0.439;SB=0.00;SOR=0.473;VQSLOD=10.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:190,0,281
1	150679033	rs1336900	G	A	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.957;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=-1.034;SB=-2.630e+02;SOR=0.804;VQSLOD=9.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,17:39:99:371,0,588
1	150679358	rs11586422	C	T	703.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-1.402;SB=-3.320e+02;SOR=0.783;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,28:48:99:732,0,589
1	150680988	rs3768005	A	T	126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=6.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-1.524;SB=-5.150e-01;SOR=2.833;VQSLOD=5.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:155,0,287
1	150689984	.	A	AT	151.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;DP=34;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.23;RPA=12,13;RU=T;ReadPosRankSum=1.744;SB=-9.732e-01;SOR=2.133;STR;VQSLOD=4.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,9:34:99:189,0,238
1	150705755	rs1415148	G	A	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=-1.602;SB=0.00;SOR=1.445;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:89:279,0,89
1	150727539	rs2230061	G	A	1198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.085;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=8.823;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=-0.879;SB=-6.990e+02;SOR=0.517;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,46:70:99:1227,0,645
1	150730184	rs11204722	C	A	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=1.201;SB=-3.500e+01;SOR=0.627;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:438,0,481
1	150730279	rs2275235	A	G	1574.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.678;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.739;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-0.159;SB=-6.250e+02;SOR=0.619;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,59:118:99:1603,0,1546
1	150771703	rs10788796	T	C	1648.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-7.600e+02;SOR=1.342;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1677,123,0
1	150779755	rs6587522	C	T	1957.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.57;SB=-1.301e+03;SOR=0.721;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1986,141,0
1	150789961	rs3894771	A	T	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-0.999;SB=0.00;SOR=0.368;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:153,0,271
1	150801466	rs3738483	T	C	768.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;SB=-2.061e+02;SOR=2.400;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:797,57,0
1	150804401	.	G	GA	123.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;DP=28;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.16;RPA=16,17;RU=A;ReadPosRankSum=-0.389;SB=-5.302e+01;SOR=0.069;STR;VQSLOD=5.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,9:28:99:161,0,205
1	150804429	rs10305704	A	C	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.154;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-0.072;SB=-1.765e+00;SOR=2.461;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:276,0,346
1	150808889	rs2228099	C	G	924.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.611;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.230;SB=-3.590e+02;SOR=0.711;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,30:51:99:953,0,606
1	150811794	rs2256355	T	C	480.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.506;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.334;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.762;SB=-7.300e+01;SOR=0.250;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:509,0,651
1	150914922	.	C	CA	124.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;DP=18;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.34;RPA=16,17;RU=A;ReadPosRankSum=-0.564;SB=-9.733e-01;SOR=2.517;STR;VQSLOD=6.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,8:18:99:162,0,137
1	150923774	rs2124952	T	A	593.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.184;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.607;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=0.190;SB=-3.680e+02;SOR=0.260;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,21:31:99:622,0,260
1	150932953	rs374284707	GA	G	90.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.319;QD=7.56;RPA=18,17;RU=A;ReadPosRankSum=0.980;SB=0.00;SOR=1.981;STR;VQSLOD=1.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,9:13:42:128,0,42
1	150935872	rs2280627	A	G	1201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.858;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.003;HaplotypeScore=8.5259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=-1.437;SB=-6.660e+02;SOR=0.425;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1230,0,946
1	150938571	rs8444	G	A	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=1.257;SB=-9.732e-01;SOR=1.688;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:185,0,303
1	150938616	rs267739	G	A	998.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-3.600e+02;SOR=1.839;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:32:75:1027,75,0
1	150939744	rs11204750	C	A	770.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.366;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=0.063;SB=-2.130e+02;SOR=0.892;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,26:38:99:799,0,338
1	150940357	rs6656535	G	T	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-0.386;SB=-4.076e+01;SOR=0.169;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:171,0,214
1	150940358	rs59988025	C	T	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-0.465;SB=-3.677e+01;SOR=0.169;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:165,0,214
1	150941381	rs752376	C	T	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.287;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=5.469;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=-1.295;SB=-7.101e+01;SOR=0.105;VQSLOD=7.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:28:99:243,0,657
1	150944541	rs267737	A	G	819.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=6.273;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:848,63,0
1	150956128	rs12405726	G	A	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=5.756;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=0.978;SB=-2.701e+01;SOR=2.584;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:231,0,203
1	150958977	rs2305814	T	C	991.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.823;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.696;SB=-5.010e+02;SOR=0.859;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,37:86:99:1020,0,1469
1	150960350	rs7532008	A	C	875.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.564;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.967;SB=-1.880e+02;SOR=1.135;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,31:61:99:904,0,801
1	150969992	rs2925740	T	C	2646.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-1.628e+03;SOR=0.741;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2675,196,0
1	150970577	rs2925741	G	T	3035.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.11;SB=-9.240e+02;SOR=1.981;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3064,223,0
1	150970836	rs1673160	T	A	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=-1.124;SB=-7.100e+01;SOR=0.582;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:694,0,455
1	150972538	rs708909	G	A	802.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3031;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=-1.075e+02;SOR=3.442;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:26:63:831,63,0
1	150974162	rs771204	G	A	3041.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-1.263e+03;SOR=1.440;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3070,229,0
1	150974311	rs59942146	G	A	1201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.793;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.123;SB=-5.020e+02;SOR=0.608;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,46:95:99:1230,0,1346
1	150975108	rs771205	T	C	2371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-1.480e+03;SOR=0.876;VQSLOD=4.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2400,178,0
1	150990466	rs35775297	C	CAT	2755.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;QD=32.20;RPA=1,2;RU=AT;SB=-7.770e+02;SOR=1.938;STR;VQSLOD=5.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,53:54:99:2793,160,0
1	150990825	rs3738480	A	G	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-4.276e+01;SOR=4.804;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:867,63,0
1	150991285	rs6664220	A	G	672.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=0.00;SOR=5.784;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:701,51,0
1	150991330	rs6664295	A	C	354.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=0.00;SOR=4.804;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:383,30,0
1	150998221	rs55774303	AT	A	112.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.05;RPA=13,12;RU=T;ReadPosRankSum=-0.627;SB=-2.777e+01;SOR=0.283;STR;VQSLOD=8.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,8:14:99:150,0,123
1	150999737	rs11204762	A	G	893.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.336;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=0.739;SB=-3.720e+02;SOR=1.542;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,33:51:99:922,0,489
1	150999863	rs55717234	A	G	1084.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=5.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.911;SB=-5.010e+02;SOR=1.033;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,42:77:99:1113,0,847
1	151001583	rs6691701	G	A	764.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.76;SB=-4.076e+01;SOR=4.804;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:793,63,0
1	151006539	rs3738476	C	A	3155.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.921;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.20;ReadPosRankSum=0.690;SB=-1.604e+03;SOR=0.738;VQSLOD=3.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:1,97:98:99:3184,241,0
1	151018861	rs6587552	A	G	510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-1.841e+02;SOR=1.473;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:539,42,0
1	151019180	rs6587553	A	G	970.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-5.310e+02;SOR=1.112;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:999,72,0
1	151021576	.	T	G	108.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.398;SB=0.00;SOR=0.693;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:137,0,158
1	151026815	rs2902810	C	T	1662.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-1.072e+03;SOR=0.800;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1691,123,0
1	151028234	rs11204767	G	T	1687.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-6.130e+02;SOR=1.938;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1716,129,0
1	151039576	rs57235606	GA	G	59.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.32;RPA=16,15;RU=A;ReadPosRankSum=-0.906;SB=-1.907e+01;SOR=0.340;STR;VQSLOD=9.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:20:97:97,0,212
1	151039609	rs3738481	A	G	858.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1710;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.63;SB=-2.980e+02;SOR=1.942;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:887,72,0
1	151070252	rs35034487	CA	C	687.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;DB;DP=33;ExcessHet=3.0103;FS=6.734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.84;RPA=14,13;RU=A;ReadPosRankSum=-0.263;SB=-1.215e+02;SOR=2.717;STR;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,32:33:69:725,69,0
1	151104950	.	G	A	622.77	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.78;SB=-3.320e+02;SOR=0.793;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:651,51,0
1	151105824	rs4971006	C	G	338.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.06;SB=-1.911e+02;SOR=1.179;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:367,27,0
1	151108137	rs4971007	T	G	4566.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-2.246e+03;SOR=1.228;VQSLOD=6.21;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4595,334,0
1	151110832	rs72708441	G	A	959.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.081;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.287;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-0.792;SB=-6.340e+02;SOR=0.585;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,40:68:99:988,0,825
1	151114882	.	C	CT	2264.73	PASS	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;RPA=1,2;RU=T;SB=-8.340e+02;SOR=1.390;STR;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2302,151,0
1	151139073	.	C	CT	167.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQ0=0;MQRankSum=1.509;QD=4.93;RPA=14,15;RU=T;ReadPosRankSum=1.124;SB=-6.300e+01;SOR=0.409;STR;VQSLOD=1.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,11:44:99:205,0,427
1	151144057	rs28730723	C	T	2075.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=2.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-0.764;SB=-1.128e+03;SOR=0.916;VQSLOD=7.59;culprit=DP	GT:AD:DP:GQ:PL	0/1:80,78:158:99:2104,0,2021
1	151146186	rs7552226	C	G	1486.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.63;SB=-4.650e+02;SOR=2.160;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1515,111,0
1	151146276	rs7521416	T	C	415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-4.176e+01;SOR=3.767;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:444,36,0
1	151149601	rs6656261	A	G	343.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-2.977e+01;SOR=3.258;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:372,27,0
1	151205303	rs7544947	A	G	1182.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-1.055e+02;SOR=4.047;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1211,90,0
1	151205349	rs7545024	A	G	448.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-4.276e+01;SOR=3.767;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:477,36,0
1	151209063	rs12407426	C	T	2211.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-8.470e+02;SOR=1.673;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2240,163,0
1	151210789	rs7532935	C	T	1456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-9.200e+02;SOR=0.818;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1485,108,0
1	151212399	rs3842532	C	CCTT	3722.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.92;SB=-9.010e+02;SOR=2.342;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:3760,178,0
1	151237589	rs3216063	TC	T	3899.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;RPA=7,6;RU=C;SB=-1.820e+03;SOR=0.765;STR;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,114:121:99:3937,343,0
1	151238222	rs2275900	G	A	659.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=0.00;SOR=5.892;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:688,54,0
1	151239051	.	T	C	2475.77	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.95;SB=-1.029e+03;SOR=1.639;VQSLOD=4.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2504,193,0
1	151239570	rs10888408	C	T	2273.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-1.138e+03;SOR=1.085;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2302,175,0
1	151254041	rs3811406	T	C	1021.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-1.731e+02;SOR=3.056;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1050,78,0
1	151263782	rs10788803	A	G	822.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-2.061e+02;SOR=2.400;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:63:851,63,0
1	151267069	rs142234366	G	A	900.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.979;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.092;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=1.022;SB=-4.300e+02;SOR=1.056;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,35:66:99:929,0,902
1	151271782	rs10888409	A	C	964.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.46;SB=-2.021e+02;SOR=2.833;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:993,72,0
1	151278505	rs2031797	A	G	1934.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-7.260e+02;SOR=1.850;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1963,144,0
1	151280400	rs1536617	C	G	1614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-5.990e+02;SOR=1.414;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1643,120,0
1	151288172	rs1056847	G	A	2781.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-1.504e+03;SOR=1.022;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2810,211,0
1	151288391	rs1752379	A	G	4734.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-2.811e+03;SOR=0.859;VQSLOD=5.89;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4763,358,0
1	151316161	rs1752386	G	A	2584.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-1.267e+03;SOR=1.058;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2613,193,0
1	151337788	rs10788804	A	G	1026.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-3.990e+02;SOR=1.885;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:75:1055,75,0
1	151372138	rs7172	G	A	1172.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-4.850e+02;SOR=1.308;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:36:90:1201,90,0
1	151372770	rs2495390	A	G	1823.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3913;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.58;SB=-5.410e+02;SOR=1.911;VQSLOD=7.24;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1852,138,0
1	151373200	rs2495391	T	C	2651.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-1.504e+03;SOR=0.997;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2680,196,0
1	151377248	rs6667714	T	C	1262.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.76;SB=-4.400e+02;SOR=1.739;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1291,96,0
1	151379250	rs2274535	G	A	547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=0.00;SOR=5.549;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:576,45,0
1	151380504	rs200057999	AAAAG	A	1120.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.647;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=3.388;POSITIVE_TRAIN_SITE;QD=33.62;ReadPosRankSum=-0.486;SB=-1.075e+02;SOR=2.147;VQSLOD=2.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,24:25:49:1158,49,0
1	151381320	rs3831142	GA	G	868.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;RPA=7,6;RU=A;SB=-8.951e+01;SOR=3.981;STR;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:34:93:906,93,0
1	151384711	rs1887545	A	G	1132.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.33;SB=-2.890e+02;SOR=2.517;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1161,84,0
1	151384733	rs3748550	G	A	1444.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-3.710e+02;SOR=2.584;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1473,111,0
1	151395782	rs2274533	T	C	905.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.76;SB=-3.876e+01;SOR=4.977;VQSLOD=4.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:934,69,0
1	151396037	rs2274534	A	C	1748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.67;SB=-6.910e+02;SOR=1.981;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1777,135,0
1	151400942	rs11204811	A	C	663.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-1.871e+02;SOR=2.093;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:692,51,0
1	151402045	rs6587577	A	G	2206.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-6.650e+02;SOR=2.368;VQSLOD=4.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2235,175,0
1	151499635	rs2298168	C	T	1009.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-3.260e+02;SOR=2.235;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1038,75,0
1	151501698	rs2096232	A	G	1083.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-1.653e+02;SOR=3.258;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:90:1112,90,0
1	151501737	rs6678068	T	C	1630.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-6.140e+02;SOR=1.893;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1659,120,0
1	151504778	rs6673116	C	T	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.333;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.82;ReadPosRankSum=0.099;SB=-2.701e+01;SOR=0.602;VQSLOD=9.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:115,0,409
1	151508061	rs11204842	A	C	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.840;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=-0.283;SB=-8.097e+01;SOR=0.223;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,16:25:99:521,0,281
1	151509966	.	T	TA	161.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.18;RPA=12,13;RU=A;ReadPosRankSum=0.967;SB=0.00;SOR=2.303;STR;VQSLOD=8.26;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:2,8:13:19:199,0,19
1	151534142	rs4132646	A	C	1008.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.002;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-1.215;SB=-3.260e+02;SOR=0.534;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1037,0,818
1	151542099	rs3748610	G	T	4986.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8343;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-2.075e+03;SOR=1.390;VQSLOD=4.99;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,154:154:99:5015,373,0
1	151546931	rs6660238	A	G	1104.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-1.483e+02;SOR=3.545;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1133,84,0
1	151551078	rs1544218	A	G	627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=0.00;SOR=5.892;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:656,54,0
1	151551320	rs3748608	G	A	3170.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-1.808e+03;SOR=0.839;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3199,238,0
1	151552301	rs3833527	TG	T	597.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-4.976e+01;SOR=3.912;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:635,42,0
1	151554503	rs1891592	T	C	3443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.70;SB=-2.073e+03;SOR=0.796;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3472,253,0
1	151634512	.	A	AT	206.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;DP=15;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;RPA=7,8;RU=T;ReadPosRankSum=-0.450;SB=-6.597e+01;SOR=0.180;STR;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:15:99:244,0,99
1	151634803	rs11808761	G	A	543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.549;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=1.076;SB=0.00;SOR=2.200;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,16:21:99:572,0,141
1	151675618	rs1308150	T	C	1094.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.53;SB=-4.020e+02;SOR=1.609;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1123,81,0
1	151679441	rs1308152	T	C	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-0.816;SB=-2.801e+01;SOR=0.892;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:127,0,214
1	151679900	rs10888428	C	T	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.561;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-1.326;SB=-1.490e+02;SOR=0.105;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:21:99:251,0,284
1	151679963	rs2280473	C	T	584.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.123;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.396;HaplotypeScore=4.7420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=0.050;SB=-1.950e+02;SOR=1.535;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:613,0,367
1	151681635	rs2280475	T	C	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.802;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.105;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.94;ReadPosRankSum=1.883;SB=-1.905e+01;SOR=1.536;VQSLOD=6.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:99:159,0,438
1	151686983	rs939592	T	A	895.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.846;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.126;SB=-5.190e+02;SOR=0.811;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,34:78:99:924,0,1195
1	151700189	rs3216068	C	CCTG	2444.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SB=-5.510e+02;SOR=2.303;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:42:99:2482,114,0
1	151700214	rs2275920	T	C	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.153;SB=-3.100e+01;SOR=1.179;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:403,0,434
1	151700227	rs2275921	G	A	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.261;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-1.008;SB=0.00;SOR=0.770;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:451,0,405
1	151701345	rs2298294	A	G	947.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.845;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=8.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.513;SB=-5.930e+02;SOR=0.600;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,42:95:99:976,0,1366
1	151732700	rs10888433	A	G	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.394;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.948;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=-0.421;SB=-1.440e+02;SOR=0.207;VQSLOD=7.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,12:29:99:302,0,518
1	151733335	rs8480	T	G	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.102;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.180;HaplotypeScore=17.7277;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=0.915;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=2.124;SB=-8.400e+01;SOR=1.104;VQSLOD=0.220;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,18:32:99:463,0,330
1	151733379	.	C	CAAA	316.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=1.003;POSITIVE_TRAIN_SITE;QD=13.20;RPA=23,26;RU=A;ReadPosRankSum=-0.812;SB=-1.160e+02;SOR=0.582;STR;VQSLOD=3.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,13:28:99:354,0,203
1	151740420	rs12066445	G	A	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.233;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-0.489;SB=-1.300e+02;SOR=0.512;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:304,0,421
1	151740479	rs1196457	C	A	1297.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-4.350e+02;SOR=1.802;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:39:99:1326,99,0
1	151740666	rs2495397	T	C	4104.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-2.450e+03;SOR=0.902;VQSLOD=4.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4133,298,0
1	151742494	rs4995159	A	G	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.007;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-1.135;SB=0.00;SOR=0.818;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:251,0,225
1	151742553	rs201309809	GAGAGAGGGAGAGGGAGACCATGGGGAGAC	G	3086.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=1.281;QD=11.83;ReadPosRankSum=1.285;SB=-3.000e+02;SOR=0.387;VQSLOD=1.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,11:27:99:3124,0,4205
1	151742588	rs112134853	C	G	521.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.537;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=1.125;QD=12.73;ReadPosRankSum=-0.368;SB=-1.280e+02;SOR=0.527;VQSLOD=2.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,19:41:99:550,0,724
1	151742798	rs3748612	T	C	830.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.755;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-1.946;SB=-1.750e+02;SOR=0.582;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,28:48:99:859,0,542
1	151747043	rs1123855	C	T	720.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-1.534;SB=-3.660e+02;SOR=0.954;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,28:59:99:749,0,841
1	151747733	rs1781421	C	T	644.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.335;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.060;HaplotypeScore=4.2498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=0.461;SB=-2.950e+02;SOR=0.507;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,23:59:99:673,0,1104
1	151747799	rs1781419	G	A	866.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.042;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.586;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-0.447;SB=-3.570e+02;SOR=1.104;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,30:59:99:895,0,908
1	151747970	rs11204885	A	G	1384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.922;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=3.390;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.641;SB=-7.390e+02;SOR=1.059;VQSLOD=8.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:61,58:119:99:1413,0,1523
1	151748425	rs3923394	C	A	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-0.484;SB=-3.300e+01;SOR=0.859;VQSLOD=10.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:211,0,171
1	151751081	rs1996729	G	A	537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=7.343;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=0.614;SB=-6.400e+01;SOR=2.390;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:566,0,289
1	151753804	.	AAT	A	179.74	PASS	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=17.97;RPA=8,7;RU=AT;SB=0.00;SOR=4.804;STR;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:28:217,28,0
1	151754112	rs35077383	T	C	959.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.400;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=-0.094;SB=-5.300e+02;SOR=0.474;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,32:52:99:988,0,446
1	151789588	.	C	CTGTGTGTG	1733.73	PASS	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;RPA=10,14;RU=TG;SB=-1.868e+02;SOR=2.833;STR;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:20:57:1771,57,0
1	151789609	.	C	T	809.77	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.39;SB=-2.700e+02;SOR=1.893;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:838,63,0
1	151789611	.	C	T	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DP=26;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.111;SB=-9.900e+01;SOR=0.527;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:296,0,394
1	151798295	rs12030974	G	A	553.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.115;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-1.551;SB=-2.110e+02;SOR=1.609;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,22:46:99:582,0,654
1	151803449	rs80223568	G	T	658.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-1.205e+02;SOR=3.056;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:687,51,0
1	151820298	rs6587624	G	C	2061.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-1.237e+03;SOR=0.880;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2090,150,0
1	151820324	rs6587625	T	C	2100.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.01;SB=-1.427e+03;SOR=0.774;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2129,151,0
1	151825713	rs998500	G	C	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-0.135;SB=-7.300e+01;SOR=0.368;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:177,0,180
1	151825991	rs7556386	G	T	556.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.071;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.099;HaplotypeScore=2.6547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.357;SB=-3.290e+02;SOR=0.446;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,24:53:99:585,0,762
1	151861477	rs1352654	A	G	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.60;ReadPosRankSum=-0.422;SB=0.00;SOR=1.179;VQSLOD=10.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:283,0,160
1	151862661	rs1060870	G	A	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.638;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.69;ReadPosRankSum=-0.065;SB=-9.400e+01;SOR=0.402;VQSLOD=7.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:289,0,494
1	151867560	rs3762427	G	A	745.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=-0.405;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.472;SB=-4.070e+02;SOR=0.693;VQSLOD=3.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,24:44:99:774,0,465
1	151881885	rs3748805	A	C	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.226;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=7.799;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.290;SB=-1.770e+02;SOR=0.072;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:333,0,356
1	152005482	rs2999550	C	G	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=1.026;SB=0.00;SOR=1.085;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:213,0,124
1	152009530	rs3811422	T	C	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=2.509;SB=-1.765e+00;SOR=1.112;VQSLOD=8.65;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:132,0,223
1	152060796	rs2935207	A	T	568.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.68;SB=-3.677e+01;SOR=4.174;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:597,45,0
1	152080814	.	G	T	537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.941;DP=48;Dels=0.00;ExcessHet=3.0103;FS=6.016;HaplotypeScore=2.7431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-0.197;SB=-3.120e+02;SOR=0.534;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,22:48:99:566,0,798
1	152085505	rs2515663	A	C	2563.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-1.651e+03;SOR=0.859;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2592,193,0
1	152185762	rs41266112	C	G	1149.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.27;SB=-4.390e+02;SOR=1.402;VQSLOD=4.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:87:1178,87,0
1	152185768	rs41266114	T	G	909.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-3.190e+02;SOR=1.697;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:938,75,0
1	152185774	rs61814932	A	G	768.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.94;SB=-2.800e+02;SOR=1.609;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:797,63,0
1	152185780	rs41266116	G	A	770.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.79;SB=-2.740e+02;SOR=1.508;VQSLOD=5.55;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,21:21:60:799,60,0
1	152185790	rs76102381	T	C	562.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=33.25;SB=-2.151e+02;SOR=1.244;VQSLOD=4.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:591,45,0
1	152185792	rs74493243	G	A	477.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=34.13;SB=-1.921e+02;SOR=1.329;VQSLOD=4.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:506,39,0
1	152185796	rs41266118	A	G	497.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-1.991e+02;SOR=1.329;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:526,39,0
1	152191709	rs6662450	C	G	4824.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-2.826e+03;SOR=0.832;VQSLOD=5.62;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4853,349,0
1	152191879	rs10788828	G	A	4047.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-2.099e+03;SOR=0.986;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,122:122:99:4076,301,0
1	152192293	rs7520375	C	T	3713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-1.847e+03;SOR=0.912;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3742,274,0
1	152192631	rs6587647	C	T	4553.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-2.694e+03;SOR=0.781;VQSLOD=5.76;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4582,334,0
1	152192687	rs6587648	T	C	3981.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-2.010e+03;SOR=1.107;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4010,295,0
1	152192819	rs141454792	C	T	1558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=3.743;HaplotypeScore=2.4328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-0.078;SB=-7.850e+02;SOR=0.379;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,52:104:99:1587,0,1399
1	152192825	rs6666097	C	T	3403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-1.574e+03;SOR=1.179;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3432,262,0
1	152192978	rs6587649	T	C	4921.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-2.764e+03;SOR=0.719;VQSLOD=5.47;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4950,370,0
1	152193052	rs6587650	A	G	5168.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-2.729e+03;SOR=0.757;VQSLOD=5.12;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5197,397,0
1	152193121	rs6587651	G	T	4761.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-2.670e+03;SOR=0.883;VQSLOD=5.46;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4790,358,0
1	152193286	rs7545406	G	T	5518.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-2.246e+03;SOR=1.348;VQSLOD=2.69;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,162:162:99:5547,418,0
1	152193291	rs6587652	G	T	5819.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.894;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4131;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.63;ReadPosRankSum=-0.449;SB=-2.437e+03;SOR=1.090;VQSLOD=1.89;culprit=DP	GT:AD:DP:GQ:PL	1/1:1,165:166:99:5848,430,0
1	152193544	rs7535536	A	G	5717.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.3234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-2.504e+03;SOR=1.338;VQSLOD=4.63;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,172:173:99:5746,421,0
1	152193547	rs6587653	G	A	5605.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-2.264e+03;SOR=1.456;VQSLOD=4.89;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,164:165:99:5634,412,0
1	152193851	rs11204937	C	T	1918.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.08;SB=-1.061e+03;SOR=0.836;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1947,144,0
1	152193990	rs11204938	A	G	1012.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-2.001e+02;SOR=3.056;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1041,78,0
1	152195728	rs34061715	AT	A	1016.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.234;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;MQRankSum=0.302;POSITIVE_TRAIN_SITE;QD=22.59;RPA=11,10;RU=T;ReadPosRankSum=1.002;SB=-2.310e+02;SOR=1.445;STR;VQSLOD=3.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,44:53:99:1054,106,0
1	152282684	rs151103850	G	A	1814.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;DB;DP=168;Dels=0.00;ExcessHet=3.0103;FS=1.228;HaplotypeScore=3.3240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-2.335;SB=-1.061e+03;SOR=0.572;VQSLOD=5.66;culprit=DP	GT:AD:DP:GQ:PL	0/1:92,76:168:99:1843,0,2491
1	152384833	rs1923492	T	C	377.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.714;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=11.067;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=-0.104;SB=-1.880e+02;SOR=0.048;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:406,0,597
1	152538358	rs17659359	G	C	853.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.603;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.103;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.177;SB=-5.070e+02;SOR=0.430;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,37:70:99:882,0,946
1	152552461	.	C	A	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.493;SB=-9.200e+01;SOR=1.038;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:273,0,351
1	152681543	rs1332496	T	C	1353.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-5.560e+02;SOR=1.765;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1382,99,0
1	152681680	rs33921874	C	CAGCTCTGGGGGCTGCTGT	3929.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.285;SB=-1.787e+03;SOR=0.704;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,20:62:99:3967,0,5663
1	152732106	rs17612167	A	T	734.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.109;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.016;SB=-2.120e+02;SOR=0.941;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,27:56:99:763,0,763
1	152944594	rs3170863	C	T	1214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.789;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.527;SB=-7.500e+02;SOR=0.683;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,53:104:99:1243,0,1298
1	152957832	rs1611762	C	A	730.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.775;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-0.015;SB=-2.180e+02;SOR=0.698;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,25:60:99:759,0,960
1	152957887	rs1611764	G	A	656.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.229;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.293;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=0.536;SB=-2.060e+02;SOR=1.125;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,26:65:99:685,0,1119
1	152975495	rs2075739	G	A	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.821;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.624;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=1.672;SB=-1.270e+02;SOR=1.516;VQSLOD=7.03;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,14:25:99:365,0,278
1	152975658	rs67156933	AGAGCCAGGCTGTACCAAGGTCCCT	A	399.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;DB;DP=26;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=64.42;MQ0=0;MQRankSum=3.622;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=3.84;RPA=3,2;RU=GAGCCAGGCTGTACCAAGGTCCCT;ReadPosRankSum=0.594;SB=-1.260e+02;SOR=0.982;STR;VQSLOD=0.061;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,11:26:65:437,0,65
1	152975829	rs1970328	A	G	781.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.051;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=1.652;SB=-3.780e+02;SOR=0.579;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,27:64:99:810,0,928
1	152975941	rs1055935	C	G	768.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.414;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.850;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=0.224;SB=-4.520e+02;SOR=0.843;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,34:80:99:797,0,1264
1	152976108	rs1015996	C	T	193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-0.873;SB=0.00;SOR=0.693;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:222,0,245
1	152976114	rs1015995	G	C	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=-0.792;SB=0.00;SOR=0.551;VQSLOD=9.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:99:124,0,212
1	152996419	rs10788851	A	G	225.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.58;SB=-1.633e+02;SOR=1.085;VQSLOD=3.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:254,18,0
1	153004652	rs1334849	G	A	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.699;SB=-7.000e+01;SOR=0.693;VQSLOD=10.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:178,0,145
1	153004721	rs1334848	A	T	463.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-0.088;SB=-1.360e+02;SOR=0.990;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:492,0,326
1	153004778	rs3820141	C	T	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.254;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.078;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.991;SB=-3.250e+02;SOR=0.527;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,24:51:99:615,0,730
1	153004809	rs3181787	T	C	618.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.289;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-0.345;SB=-3.590e+02;SOR=0.716;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,27:56:99:647,0,614
1	153004848	rs3795381	T	C	616.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.657;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-1.199;SB=-3.850e+02;SOR=0.839;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,28:58:99:645,0,827
1	153004853	rs3795382	C	T	608.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.778;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=5.587;HaplotypeScore=2.7041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-1.491;SB=-3.590e+02;SOR=0.897;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,27:55:99:637,0,723
1	153004983	rs12195	C	T	1073.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.160;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=5.406;HaplotypeScore=4.4933;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.871;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=-0.230;SB=-2.950e+02;SOR=1.414;VQSLOD=0.274;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,33:60:99:1102,0,691
1	153005156	rs2711	C	T	1592.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=2.818;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=-0.333;SB=-6.590e+02;SOR=1.065;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,56:96:99:1621,0,814
1	153122310	rs510277	G	A	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.642;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=-0.438;SB=-1.020e+02;SOR=0.874;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:335,0,362
1	153122620	rs513555	T	C	979.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.665;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.921;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.044;SB=-5.370e+02;SOR=0.954;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,39:73:99:1008,0,925
1	153233991	rs66779360	A	ACTCTGGCGGCGG	576.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.30;MQ0=0;MQRankSum=1.207;POSITIVE_TRAIN_SITE;QD=12.02;RPA=1,2;RU=CTCTGGCGGCGG;ReadPosRankSum=0.618;SB=-2.030e+02;SOR=0.693;STR;VQSLOD=3.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:15:99:614,0,691
1	153270362	rs2771110	C	G	589.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.429;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=0.653;SB=0.00;SOR=1.302;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,17:27:99:618,0,319
1	153270857	rs2771111	T	C	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.562;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=1.005;SB=-1.765e+00;SOR=0.963;VQSLOD=9.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:164,0,356
1	153271524	rs821431	C	T	739.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.138;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=1.151;SB=-2.440e+02;SOR=0.708;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,29:50:99:768,0,620
1	153277423	rs843971	C	T	1101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.914;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-0.754;SB=-6.670e+02;SOR=0.505;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,40:71:99:1130,0,817
1	153277660	rs2771112	A	T	541.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.917;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=-0.620;SB=-2.130e+02;SOR=0.525;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,21:34:99:570,0,336
1	153279462	rs66966700	TAAG	T	1028.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=41;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.79;MQ0=0;MQRankSum=1.850;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=0.117;SB=-2.300e+02;SOR=1.167;VQSLOD=0.268;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,20:41:99:1066,0,1195
1	153282892	rs821424	C	T	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.718;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.530;SB=-3.400e+01;SOR=0.693;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:269,0,319
1	153283004	rs821423	C	T	840.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.173;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-0.592;SB=-3.270e+02;SOR=1.025;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,30:62:99:869,0,878
1	153312644	rs2771122	A	G	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.346;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=6.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-0.642;SB=-9.500e+01;SOR=2.066;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:511,0,410
1	153314153	rs3006448	C	A	724.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.248;SB=-4.390e+02;SOR=0.588;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,28:62:99:753,0,909
1	153314347	rs3006449	C	T	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.480;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.559;SB=-3.000e+01;SOR=1.314;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:332,0,316
1	153315467	rs34336843	T	TAAG	485.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;RPA=1,2;RU=AAG;ReadPosRankSum=0.151;SB=-5.300e+01;SOR=0.631;STR;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,10:28:99:523,0,914
1	153315579	rs3014863	A	G	1149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.972;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.29;MQ0=0;MQRankSum=1.351;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=0.707;SB=-4.860e+02;SOR=1.058;VQSLOD=0.560;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1178,0,987
1	153315784	rs1865234	T	C	470.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-0.342;SB=-3.100e+01;SOR=1.646;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:499,0,357
1	153320334	rs3006457	T	C	647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.388;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.308;HaplotypeScore=1.9148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.947;SB=-2.460e+02;SOR=0.409;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,24:47:99:676,0,725
1	153320372	rs3006458	T	G	881.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.063;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.143;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-1.130;SB=-5.010e+02;SOR=0.400;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,35:67:99:910,0,839
1	153320581	rs3006459	T	C	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.276;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.608;SB=-3.400e+01;SOR=0.957;VQSLOD=9.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,19:34:99:643,0,453
1	153410822	rs10888561	C	A	597.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.679;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-0.838;SB=-2.380e+02;SOR=0.631;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,24:39:99:626,0,439
1	153412392	rs3006428	T	G	1078.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.124;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=3.253;HaplotypeScore=2.7649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-0.776;SB=-2.920e+02;SOR=1.173;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,37:85:99:1107,0,1256
1	153430249	rs35971850	TG	T	668.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=1.092;POSITIVE_TRAIN_SITE;QD=15.20;RPA=4,3;RU=G;ReadPosRankSum=-1.528;SB=-3.070e+02;SOR=0.560;STR;VQSLOD=3.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,21:45:99:706,0,802
1	153431200	rs3014836	T	C	698.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.885;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.102;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=-2.050;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=0.000;SB=-2.801e+01;SOR=1.244;VQSLOD=6.800e-03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,22:44:99:727,0,684
1	153431406	rs3014837	C	G	3394.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-1.278e+03;SOR=1.755;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3423,250,0
1	153509892	rs2248745	A	G	849.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.0151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-1.225;SB=-3.400e+02;SOR=0.755;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,34:65:99:878,0,794
1	153516185	rs143742855	G	A	844.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=16.807;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.590;SB=-7.790e+00;SOR=3.313;VQSLOD=4.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,29:69:99:873,0,1035
1	153587308	rs11548104	C	T	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.672;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-1.419;SB=-1.709e+01;SOR=1.981;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:201,0,225
1	153588208	rs9792963	G	A	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.232;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-0.874;SB=-7.300e+01;SOR=0.527;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,21:37:99:610,0,552
1	153588279	rs9792967	G	A	1105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.161;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.488;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-0.664;SB=-6.180e+02;SOR=0.336;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1134,0,1094
1	153588340	rs11548103	C	T	1293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=1.624;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-0.560;SB=-6.780e+02;SOR=0.890;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,47:100:99:1322,0,1350
1	153600778	rs3806233	G	A	39.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.21;ReadPosRankSum=-0.119;SB=-5.150e-01;SOR=0.922;VQSLOD=8.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,3:18:68:68,0,519
1	153604029	rs1046379	C	T	2368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-1.508e+03;SOR=0.746;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2397,175,0
1	153604112	rs1046381	G	A	1230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.104;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.811;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=0.365;SB=-4.680e+02;SOR=0.927;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1259,0,1066
1	153609039	rs4845557	T	C	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.388;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.178;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=1.395;SB=-2.390e+02;SOR=0.290;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,19:36:99:503,0,483
1	153615820	rs74844193	G	A	682.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.599;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=6.035;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.905;SB=-4.230e+02;SOR=0.212;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,26:51:99:711,0,635
1	153635425	rs3795396	G	A	486.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=0.059;SB=-2.590e+02;SOR=0.971;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,19:44:99:515,0,776
1	153636432	rs10598064	TTAC	T	375.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.18;RPA=13,12;RU=TAC;SB=-1.060e+02;SOR=1.863;STR;VQSLOD=4.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:11:24:413,24,0
1	153636472	.	T	C	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-0.921;SB=-6.100e+01;SOR=1.245;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:193,0,176
1	153636860	rs4351684	A	G	1402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.677;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-0.062;SB=-8.680e+02;SOR=0.516;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,58:125:99:1431,0,1733
1	153637617	rs3862047	G	A	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=0.973;SB=-2.701e+01;SOR=1.112;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:159,0,283
1	153640665	rs10797096	G	A	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.460;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.029;SB=-7.000e+01;SOR=0.392;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:329,0,503
1	153642372	rs79913857	G	T	998.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.208;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.145;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-0.257;SB=-6.050e+02;SOR=0.404;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,36:63:99:1027,0,751
1	153642835	rs6663046	G	C	2105.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-9.690e+02;SOR=1.306;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2134,154,0
1	153642909	rs11265625	A	G	452.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.482;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.387;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.615;SB=-9.300e+01;SOR=1.402;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:481,0,551
1	153661374	rs34402066	CG	C	1307.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DB;DP=70;ExcessHet=3.0103;FS=5.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.95;RPA=2,1;RU=G;ReadPosRankSum=0.637;SB=-5.160e+02;SOR=0.302;STR;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,36:70:99:1345,0,1285
1	153662617	rs55865334	T	A	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.48;ReadPosRankSum=0.000;SB=-4.076e+01;SOR=1.022;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:43:273,0,43
1	153665919	.	T	TC	168.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;RPA=3,4;RU=C;ReadPosRankSum=1.626;SB=0.00;SOR=0.859;STR;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:12:99:206,0,163
1	153732640	rs7554642	A	G	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=0.00;SOR=4.977;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:394,33,0
1	153743234	rs6675978	T	C	1379.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-9.810e+02;SOR=0.733;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1408,99,0
1	153743289	rs12068256	C	G	636.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.705;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=1.611;SB=-3.610e+02;SOR=0.525;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,25:45:99:665,0,553
1	153750207	rs67865767	C	CCTT	1305.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.50;ReadPosRankSum=0.087;SB=-2.790e+02;SOR=0.557;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,23:35:99:1343,0,624
1	153750214	rs3841381	TC	T	722.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;DB;DP=42;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.63;RPA=6,5;RU=C;ReadPosRankSum=0.815;SB=-2.030e+02;SOR=0.379;STR;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,25:42:99:760,0,479
1	153751636	.	G	A	2251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;DP=153;Dels=0.00;ExcessHet=3.0103;FS=2.033;HaplotypeScore=2.6182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-0.508;SB=-1.007e+03;SOR=0.868;VQSLOD=6.04;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,79:153:99:2280,0,1800
1	153784666	rs11347449	CT	C	303.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQ0=0;MQRankSum=0.544;POSITIVE_TRAIN_SITE;QD=14.47;RPA=18,17;RU=T;ReadPosRankSum=-1.006;SB=-5.097e+01;SOR=1.101;STR;VQSLOD=3.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,18:31:17:341,0,17
1	153800931	rs144104082	TACACACAC	T	635.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;RPA=18,14;RU=AC;SB=0.00;SOR=4.174;STR;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:11:21:673,21,0
1	153825208	rs4540690	A	G	508.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=-2.431e+02;SOR=1.493;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:537,39,0
1	153927251	.	A	G	337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.771;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-0.511;SB=-9.200e+01;SOR=1.718;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:366,0,320
1	154002393	rs191534009	G	A	1445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.699;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=1.470;SB=-5.140e+02;SOR=0.599;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,53:99:99:1474,0,1349
1	154061855	rs2066135	T	G	1756.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-5.290e+02;SOR=2.259;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1785,129,0
1	154108387	rs3001361	G	A	984.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-4.750e+02;SOR=1.143;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1013,75,0
1	154199543	rs4845365	T	C	498.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-4.176e+01;SOR=3.767;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:527,39,0
1	154243457	rs12354278	A	T	1065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=4.082;HaplotypeScore=2.6377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-1.681;SB=-4.080e+02;SOR=1.244;VQSLOD=7.26;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:52,44:96:99:1094,0,1331
1	154245142	rs11265425	T	G	514.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=0.298;SB=-2.590e+02;SOR=0.527;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,21:32:99:543,0,322
1	154245917	rs13796	T	C	848.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.388;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.303;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-0.811;SB=-3.190e+02;SOR=1.460;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,29:59:99:877,0,870
1	154285052	rs11265530	G	A	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0187;MLEAC=1;MLEAF=0.500;MQ=55.47;MQ0=0;MQRankSum=-3.633;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=-1.671;SB=-1.030e+02;SOR=0.593;VQSLOD=2.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,14:26:99:444,0,257
1	154285078	rs11581043	T	G	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9085;MLEAC=1;MLEAF=0.500;MQ=56.00;MQ0=0;MQRankSum=-3.274;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-1.472;SB=-2.501e+01;SOR=1.179;VQSLOD=2.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,9:19:99:229,0,270
1	154293675	rs6668968	G	A	1754.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-7.770e+02;SOR=1.262;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1783,129,0
1	154294656	rs1194607	T	C	1667.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.36;SB=-6.080e+02;SOR=1.802;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1696,126,0
1	154295592	rs6685323	C	T	4079.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-2.408e+03;SOR=0.723;VQSLOD=5.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4108,304,0
1	154303783	rs147889978	G	A	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=-1.133;SB=-3.100e+01;SOR=0.892;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:120,0,212
1	154303976	rs6702754	T	C	2493.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-8.700e+02;SOR=1.795;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2522,184,0
1	154305010	rs1209264	A	G	647.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;SB=-1.205e+02;SOR=2.948;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:676,51,0
1	154305190	rs12077870	G	C	1634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-9.010e+02;SOR=1.199;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1663,117,0
1	154310223	.	G	GA	1237.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.288;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.33;RPA=9,10;RU=A;ReadPosRankSum=0.686;SB=-4.600e+02;SOR=1.414;STR;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,45:53:86:1275,86,0
1	154317281	rs9660850	G	A	2847.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-1.477e+03;SOR=1.046;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2876,217,0
1	154318172	rs1979575	A	G	2026.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-6.600e+02;SOR=1.850;VQSLOD=6.64;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2055,163,0
1	154321072	rs1194591	A	G	1385.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.64;SB=-3.710e+02;SOR=2.191;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1414,105,0
1	154401972	rs6694817	T	C	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.998;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-0.539;SB=-1.590e+02;SOR=0.752;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,16:40:99:416,0,634
1	154407419	rs7518199	A	C	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=0.308;SB=-7.100e+01;SOR=1.492;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:49:258,0,49
1	154407713	rs7521458	T	C	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=-0.262;SB=-1.225e+02;SOR=0.132;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:367,0,220
1	154408340	rs4845371	T	C	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=0.353;SB=-3.101e+01;SOR=0.330;VQSLOD=10.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:132,0,254
1	154417415	.	G	C	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1393;MLEAC=1;MLEAF=0.500;MQ=55.70;MQ0=0;MQRankSum=-1.969;QD=7.06;ReadPosRankSum=2.023;SB=-1.765e+00;SOR=2.093;VQSLOD=0.645;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,7:13:99:120,0,117
1	154426970	rs2228145	A	C	30.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.975;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.836;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.20;ReadPosRankSum=-0.567;SB=-5.200e+01;SOR=0.105;VQSLOD=5.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:59:59,0,293
1	154437896	rs2229238	T	C	1136.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.82;SB=-1.573e+02;SOR=3.545;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1165,84,0
1	154442960	rs11265621	G	A	1268.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-2.351e+02;SOR=3.086;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:93:1297,93,0
1	154459197	rs4845633	C	G	973.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.64;SB=-4.320e+02;SOR=1.418;VQSLOD=4.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:72:1002,72,0
1	154473726	rs6683078	G	A	738.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-1.603e+02;SOR=2.737;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:767,57,0
1	154474131	rs4845635	C	G	1277.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-5.920e+02;SOR=1.151;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1306,96,0
1	154479657	rs35092505	C	CAT	2110.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.21;SB=-5.170e+02;SOR=2.303;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:2148,114,0
1	154479670	rs6664608	C	T	1359.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-5.160e+02;SOR=1.609;VQSLOD=6.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1388,102,0
1	154492702	rs10908842	G	A	1964.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-6.380e+02;SOR=2.194;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1993,150,0
1	154493721	rs6684225	T	C	1040.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=-1.741e+02;SOR=2.985;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1069,78,0
1	154514331	rs4845647	C	A	525.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-8.297e+01;SOR=3.258;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:554,42,0
1	154516477	rs12750774	G	A	592.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.100;HaplotypeScore=2.5338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.59;ReadPosRankSum=0.391;SB=-3.010e+02;SOR=1.096;VQSLOD=7.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,26:70:99:621,0,1208
1	154516571	rs6678164	T	C	2106.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-1.118e+03;SOR=1.033;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2135,154,0
1	154523215	rs4520411	C	T	775.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.86;SB=-4.176e+01;SOR=4.712;VQSLOD=5.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:804,60,0
1	154523588	rs10908849	T	G	919.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-3.377e+01;SOR=5.058;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:948,72,0
1	154524973	rs12144146	A	G	1508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.885;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=7.627;HaplotypeScore=2.8798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.834;SB=-6.790e+02;SOR=1.371;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,55:106:99:1537,0,1228
1	154528086	rs4078519	T	C	2744.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-1.482e+03;SOR=1.055;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2773,211,0
1	154548521	rs2072659	C	G	619.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.25;SB=0.00;SOR=5.670;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:648,48,0
1	154557685	rs9427094	C	T	1291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.422;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-0.370;SB=-5.400e+02;SOR=0.646;VQSLOD=8.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,50:96:99:1320,0,1314
1	154561261	rs9427095	G	C	2221.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-9.050e+02;SOR=1.445;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:69:99:2250,163,0
1	154561925	rs1127309	C	T	758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.867;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.032;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=1.799;SB=-4.870e+02;SOR=0.546;VQSLOD=7.80;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:37,31:68:99:787,0,987
1	154562629	rs60407842	C	A	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8812;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=0.904;QD=9.36;ReadPosRankSum=-0.380;SB=-8.500e+01;SOR=0.412;VQSLOD=2.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:178,0,281
1	154571174	rs4045821	T	TGGA	533.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;RPA=1,2;RU=GGA;SB=0.00;SOR=4.804;STR;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:13:30:571,30,0
1	154573967	rs2229857	T	C	1675.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.682;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-1.130;SB=-1.131e+03;SOR=0.678;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,68:128:99:1704,0,1640
1	154574820	rs1466731	T	C	4099.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.89;SB=-2.382e+03;SOR=1.017;VQSLOD=3.83;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4128,307,0
1	154575040	rs1802645	C	T	2150.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-1.234e+03;SOR=0.756;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2179,163,0
1	154580348	.	G	GAC	1267.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;DP=85;ExcessHet=3.0103;FS=4.761;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;RPA=8,9;RU=AC;ReadPosRankSum=-0.335;SB=-5.660e+02;SOR=0.313;STR;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,34:84:99:1305,0,1621
1	154600372	rs6426859	A	G	549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-1.941e+02;SOR=1.863;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:578,42,0
1	154744807	rs1051614	C	G	2886.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6546;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-1.583e+03;SOR=1.006;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2915,208,0
1	154744852	rs1131820	A	G	2164.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-8.800e+02;SOR=1.512;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2193,160,0
1	154832304	rs4845397	T	C	814.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.613;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=0.617;SB=-3.930e+02;SOR=0.721;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,32:84:99:843,0,1480
1	154832322	rs1218586	A	C	663.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.908;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=1.863;SB=-2.640e+02;SOR=0.705;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,24:65:99:692,0,1257
1	154917701	rs906594	A	G	1503.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.85;SB=-8.730e+02;SOR=0.931;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1532,111,0
1	154918352	rs41264253	G	A	1330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=3.904;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.021;SB=-7.180e+02;SOR=0.336;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,47:98:99:1359,0,1370
1	154924015	rs116114495	C	T	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-0.776;SB=-1.210e+02;SOR=0.827;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:258,0,233
1	154925989	rs1218593	T	C	600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.753;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.937;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=-0.190;SB=-1.390e+02;SOR=2.030;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,21:31:99:629,0,217
1	154948327	rs12087657	G	T	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-1.716;SB=-1.360e+02;SOR=0.519;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:403,0,541
1	154987526	rs11264295	C	T	861.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.066;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.159;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=0.983;SB=-5.080e+02;SOR=0.789;VQSLOD=7.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,36:85:99:890,0,1365
1	154988957	rs2242195	A	G	1314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.992;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=-0.999;SB=-4.380e+02;SOR=0.481;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,43:80:99:1343,0,1127
1	154995503	rs2242193	G	A	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.510;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.10;ReadPosRankSum=0.635;SB=-1.760e+02;SOR=0.425;VQSLOD=7.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,12:27:99:247,0,446
1	155001929	rs10908452	T	C	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.601;SB=-1.230e+02;SOR=0.813;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:369,0,502
1	155006091	rs10908453	A	G	1165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.012;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.591;HaplotypeScore=2.5757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-0.380;SB=-7.730e+02;SOR=0.512;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,46:104:99:1194,0,1572
1	155006999	rs6680600	C	T	815.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.933;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.122;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=1.416;SB=-5.330e+02;SOR=0.460;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,32:60:99:844,0,764
1	155007293	rs4845404	C	T	151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=0.770;VQSLOD=9.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:180,0,438
1	155007302	rs4845405	C	A	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.274;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.46;ReadPosRankSum=0.370;SB=0.00;SOR=0.193;VQSLOD=10.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:138,0,425
1	155019710	rs11264300	A	C	961.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.053;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-1.827;SB=-5.940e+02;SOR=0.629;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,36:69:99:990,0,951
1	155021893	.	AT	A	193.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.75;RPA=15,14;RU=T;ReadPosRankSum=0.370;SB=-7.894e+00;SOR=1.739;STR;VQSLOD=7.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,12:29:99:195,0,171
1	155026114	rs6660884	C	T	493.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.128;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.337;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=-0.189;SB=-3.400e+01;SOR=2.833;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,16:20:73:522,0,73
1	155026942	rs6427128	A	C	1248.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-6.190e+02;SOR=0.968;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1277,96,0
1	155028522	rs11264302	G	A	1408.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.492;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=1.486;HaplotypeScore=23.2569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-1.251;SB=-7.920e+02;SOR=0.540;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,57:115:99:1437,0,1431
1	155030557	rs11264303	A	C	2262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.687;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=1.809;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.412;SB=-1.281e+03;SOR=0.590;VQSLOD=6.61;culprit=DP	GT:AD:DP:GQ:PL	0/1:99,87:186:99:2291,0,2606
1	155031376	rs12023499	C	T	1149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.543;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=2.815;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.074;SB=-5.100e+02;SOR=1.015;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,41:89:99:1178,0,1318
1	155033317	rs11264304	T	C	2595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-9.170e+02;SOR=1.923;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2624,208,0
1	155033918	rs41264285	C	T	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.561;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.393;SB=-9.600e+01;SOR=0.941;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:394,0,420
1	155058663	rs17723260	G	A	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.065;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.507;HaplotypeScore=5.4226;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=-0.917;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-0.751;SB=-1.470e+02;SOR=1.022;VQSLOD=0.306;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,12:24:99:365,0,387
1	155106054	rs4390169	A	G	3601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-1.539e+03;SOR=1.295;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3630,274,0
1	155106227	rs4745	A	T	2806.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.616e+03;SOR=0.786;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2835,214,0
1	155108663	.	A	AG	337.74	PASS	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;RPA=5,6;RU=G;SB=0.00;SOR=4.804;STR;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:12:30:375,30,0
1	155178782	rs760077	A	T	859.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.916;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.015;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=1.604;SB=-4.900e+02;SOR=0.473;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,33:69:99:888,0,989
1	155205669	rs28559737	G	T	4621.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.24;SB=-1.516e+03;SOR=1.990;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4650,352,0
1	155208647	rs7416991	T	C	637.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=0.00;SOR=6.091;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:666,57,0
1	155217398	.	A	G	831.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.659;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.633;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.85;ReadPosRankSum=0.025;SB=-2.570e+02;SOR=0.396;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:56:99:860,0,806
1	155231774	.	C	T	832.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.963;DP=64;Dels=0.00;ExcessHet=3.0103;FS=7.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.01;ReadPosRankSum=1.147;SB=-5.210e+02;SOR=0.189;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,35:64:99:861,0,848
1	155235557	rs192046581	C	T	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.521;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=0.940;SB=0.00;SOR=0.760;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:501,0,471
1	155294274	rs914616	A	G	346.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.68;SB=-2.061e+02;SOR=0.836;VQSLOD=4.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:375,27,0
1	155294772	rs4971075	A	G	1246.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-6.040e+02;SOR=0.880;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1275,93,0
1	155308897	.	C	T	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-0.501;SB=-1.765e+00;SOR=1.402;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:201,0,249
1	155313047	rs4971051	T	C	834.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=-1.185e+02;SOR=3.442;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:863,63,0
1	155326922	rs68168045	CT	C	484.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;RPA=2,1;RU=T;SB=0.00;SOR=5.421;STR;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:522,42,0
1	155408635	rs4971053	T	C	3108.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-1.866e+03;SOR=0.732;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3137,232,0
1	155532316	rs12403379	T	C	624.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-3.650e+02;SOR=0.892;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:653,48,0
1	155532325	rs12403380	T	C	663.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.61;SB=-4.030e+02;SOR=0.784;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:692,51,0
1	155532332	rs34869594	T	C	578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-3.700e+02;SOR=0.793;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:607,45,0
1	155532341	rs61812107	T	C	626.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-3.280e+02;SOR=1.022;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:655,48,0
1	155533153	rs148794484	G	A	352.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=0.000;SB=-1.350e+02;SOR=1.270;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:381,0,111
1	155618415	rs5777949	CT	C	3278.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;RPA=4,3;RU=T;SB=-1.484e+03;SOR=0.896;STR;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:97:99:3316,286,0
1	155631307	.	AACACACACAC	A	793.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.18;MQ0=0;MQRankSum=-1.531;POSITIVE_TRAIN_SITE;QD=17.01;RPA=17,12;RU=AC;ReadPosRankSum=0.776;SB=0.00;SOR=1.329;STR;VQSLOD=3.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,9:24:99:831,0,517
1	155691191	.	GTA	G	125.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.99;RPA=9,8;RU=TA;ReadPosRankSum=1.431;SB=-9.732e-01;SOR=1.179;STR;VQSLOD=7.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:163,0,542
1	155737425	rs71591911	AACAC	A	648.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;RPA=14,12;RU=AC;SB=0.00;SOR=5.136;STR;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:18:36:686,36,0
1	155746340	rs60525991	CT	C	1014.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.870;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.90;RPA=12,11;RU=T;ReadPosRankSum=0.894;SB=-2.670e+02;SOR=1.217;STR;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:4,47:55:37:1052,37,0
1	155753676	rs822019	A	G	396.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=-2.001e+02;SOR=1.329;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:425,30,0
1	155754117	rs822020	G	A	685.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.21;SB=-1.205e+02;SOR=2.948;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:714,54,0
1	155755097	rs822021	G	A	1214.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.61;SB=-6.750e+02;SOR=1.230;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:90:1243,90,0
1	155784372	rs822013	G	A	395.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=0.00;SOR=4.977;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:424,33,0
1	155785578	rs148569012	CAACT	C	7005.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-2.652e+03;SOR=1.306;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:103:99:7043,304,0
1	155822971	rs822490	C	T	721.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=0.00;SOR=5.994;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:750,57,0
1	155823002	rs822491	T	C	1156.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;SB=-1.175e+02;SOR=4.112;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:90:1185,90,0
1	155829360	rs1749412	C	A	857.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-4.076e+01;SOR=5.058;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:886,69,0
1	155837865	rs822522	G	C	1585.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-7.000e+02;SOR=1.473;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1614,117,0
1	155838267	rs822521	T	C	3968.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-2.000e+03;SOR=1.005;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3997,295,0
1	155850558	rs822508	T	C	720.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=-1.623e+02;SOR=2.400;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:60:749,60,0
1	155850811	rs822509	G	A	371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=0.00;SOR=4.977;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:400,30,0
1	155870416	rs1749409	G	A	2631.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-1.615e+03;SOR=0.716;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2660,196,0
1	155874426	.	AAG	A	396.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.80;RPA=3,2;RU=AG;ReadPosRankSum=1.570;SB=-1.570e+02;SOR=0.801;STR;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,11:31:99:434,0,891
1	155880573	rs493446	C	G	2894.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-1.476e+03;SOR=1.166;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2923,214,0
1	155880760	rs33913852	C	CA	949.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-2.023e+02;SOR=2.636;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:23:63:987,63,0
1	155891045	rs625658	A	C	414.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-3.976e+01;SOR=3.611;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:443,33,0
1	155891877	rs33993745	C	CAG	912.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;RPA=1,2;RU=AG;SB=-5.676e+01;SOR=4.407;STR;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:20:54:950,54,0
1	155899020	rs539602	A	T	755.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=-3.430e+02;SOR=1.528;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:57:784,57,0
1	155903310	rs4661150	T	C	425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=0.00;SOR=4.977;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:454,33,0
1	155903408	rs4661151	C	T	1240.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-5.860e+02;SOR=1.455;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:90:1269,90,0
1	155904177	rs2275079	T	C	1776.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-1.067e+03;SOR=0.986;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1805,129,0
1	155904392	rs2275081	G	A	435.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.68;SB=0.00;SOR=5.136;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:464,36,0
1	155912486	rs2152051	T	C	3569.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-2.125e+03;SOR=1.010;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3598,268,0
1	155917880	rs1010033	T	A	3438.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-1.340e+03;SOR=1.807;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3467,259,0
1	155928232	rs2364404	T	C	452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.63;SB=-1.961e+02;SOR=1.739;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:36:481,36,0
1	155928242	rs2886069	C	T	418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-1.543e+02;SOR=1.911;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:447,33,0
1	155931368	rs4661175	G	A	904.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-3.150e+02;SOR=1.863;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:933,69,0
1	155955076	rs4661216	A	G	2116.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8402;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-9.240e+02;SOR=1.545;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2145,154,0
1	156011444	rs2297792	T	C	519.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-2.890e+02;SOR=1.179;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:548,39,0
1	156013676	rs34673835	C	T	319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.128;SB=-2.030e+02;SOR=0.693;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:348,0,331
1	156025096	rs7541	C	T	1658.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.817;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=0.947;SB=-4.670e+02;SOR=0.854;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,62:121:99:1687,0,1680
1	156132909	rs143862668	GCA	G	1418.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;DB;DP=88;ExcessHet=3.0103;FS=7.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.69;RPA=2,1;RU=CA;ReadPosRankSum=1.007;SB=-5.660e+02;SOR=0.971;STR;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,32:88:99:1456,0,2605
1	156133038	rs7555253	T	C	794.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.558;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.112;HaplotypeScore=3.7891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.722;SB=-4.030e+02;SOR=0.442;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,29:67:99:823,0,1045
1	156146218	rs12401573	C	T	2050.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-5.780e+02;SOR=2.265;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2079,150,0
1	156146669	rs199933282	C	T	955.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.24;ReadPosRankSum=0.931;SB=-5.180e+02;SOR=0.610;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,37:85:99:984,0,1351
1	156163906	rs41265025	C	T	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.925;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-0.580;SB=-1.765e+00;SOR=1.302;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:272,0,376
1	156169610	rs2072499	A	G	1041.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.330;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-1.317;SB=-2.100e+02;SOR=0.846;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,35:66:99:1070,0,868
1	156182710	rs2241107	T	C	574.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.981;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.733;HaplotypeScore=3.2332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=-0.792;SB=-1.065e+02;SOR=0.124;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,18:28:99:603,0,307
1	156186275	rs1065147	A	C	522.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-2.750e+02;SOR=1.179;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:551,39,0
1	156186279	rs61813337	T	C	543.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.62;SB=-2.590e+02;SOR=1.292;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:572,42,0
1	156186287	rs1065149	T	C	556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.30;SB=-2.580e+02;SOR=1.292;VQSLOD=4.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:585,42,0
1	156186327	rs4119257	T	C	557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.89;SB=-3.330e+02;SOR=0.892;VQSLOD=4.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:42:586,42,0
1	156186349	rs1062299	T	C	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.197;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.14;ReadPosRankSum=0.063;SB=-3.000e+02;SOR=0.105;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,18:20:32:511,0,32
1	156186369	rs11264459	A	T	609.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.04;SB=-3.310e+02;SOR=0.990;VQSLOD=3.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:22:48:638,48,0
1	156186461	rs1062302	T	C	594.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.30;SB=-3.290e+02;SOR=1.022;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:623,45,0
1	156186465	rs1062303	C	G	604.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.24;SB=-3.580e+02;SOR=0.892;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:633,48,0
1	156186522	rs4119260	A	G	561.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.75;SB=-2.960e+02;SOR=0.990;VQSLOD=2.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:42:590,42,0
1	156186563	rs4119261	T	G	514.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.60;SB=-1.791e+02;SOR=1.863;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:543,39,0
1	156186596	rs1923544	A	G	416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.06;SB=-4.176e+01;SOR=2.833;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:445,33,0
1	156186604	rs4998248	A	G	413.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-7.497e+01;SOR=2.833;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:442,33,0
1	156186606	rs4998249	G	A	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.98;SB=-4.076e+01;SOR=2.670;VQSLOD=5.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:30:412,30,0
1	156186615	rs7534434	A	G	343.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-4.176e+01;SOR=3.258;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:372,27,0
1	156195205	rs2758600	C	T	355.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.461;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7742;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=-0.806;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-1.097;SB=-1.010e+02;SOR=0.671;VQSLOD=3.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,14:25:99:384,0,314
1	156202173	rs1052053	A	G	999.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-0.142;SB=-6.940e+02;SOR=0.663;VQSLOD=8.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:68,46:114:99:1028,0,1924
1	156206121	rs1052067	G	A	2151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.080;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=1.973;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-0.477;SB=-1.184e+03;SOR=0.546;VQSLOD=7.31;culprit=DP	GT:AD:DP:GQ:PL	0/1:83,80:163:99:2180,0,2265
1	156213921	rs7513351	C	T	1341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.926;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=1.270;SB=-6.340e+02;SOR=0.626;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,51:85:99:1370,0,929
1	156215899	rs2075165	G	A	702.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.840;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=17.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-0.976;SB=-3.670e+02;SOR=0.619;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,28:62:99:731,0,937
1	156220056	rs1043165	T	C	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.338;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=4.032;HaplotypeScore=2.6457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-0.473;SB=-2.300e+02;SOR=1.410;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,26:58:99:643,0,705
1	156230141	rs2287025	T	A	731.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.301;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=-0.746;SB=-1.730e+02;SOR=1.705;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,24:40:99:760,0,419
1	156230206	rs2287024	C	A	1063.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.365;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=9.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=-0.210;SB=-2.920e+02;SOR=1.986;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,35:60:99:1092,0,615
1	156230605	rs7533548	C	G	583.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=8.478;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=0.627;SB=-2.501e+01;SOR=2.876;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:612,0,414
1	156231266	rs759328	G	C	939.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.940;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.431;SB=-4.640e+02;SOR=0.491;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,38:76:99:968,0,1088
1	156233479	rs4661036	T	C	426.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.687;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.715;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-0.482;SB=-6.100e+01;SOR=1.312;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,15:36:99:455,0,571
1	156246728	rs2277872	T	G	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-0.063;SB=0.00;SOR=0.693;VQSLOD=10.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:245,0,238
1	156247907	rs2248273	C	T	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.028;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=-0.924;SB=-6.500e+01;SOR=1.061;VQSLOD=10.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:339,0,243
1	156255833	rs2842883	G	C	699.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-8.297e+01;SOR=3.716;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:728,54,0
1	156261491	rs3795728	G	C	444.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-0.254;SB=-1.660e+02;SOR=0.518;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:473,0,678
1	156279210	rs3001784	T	C	1513.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-4.430e+02;SOR=2.303;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1542,114,0
1	156280296	rs72414608	GATAA	G	364.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQ0=0;MQRankSum=1.711;POSITIVE_TRAIN_SITE;QD=15.20;RPA=3,2;RU=ATAA;ReadPosRankSum=-0.622;SB=-1.764e+00;SOR=1.445;STR;VQSLOD=3.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,8:19:99:402,0,560
1	156287360	rs2249790	C	T	767.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.782;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.047;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=0.345;SB=-2.520e+02;SOR=0.914;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,29:63:99:796,0,878
1	156287403	rs2296374	T	C	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.579;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.579;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-0.213;SB=-9.700e+01;SOR=1.402;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:519,0,496
1	156303527	rs2764402	C	T	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.30;ReadPosRankSum=0.706;SB=-3.100e+01;SOR=0.693;VQSLOD=9.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:161,0,288
1	156304782	rs3762281	A	G	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.176;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.263;SB=-2.801e+01;SOR=1.765;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:359,0,317
1	156347131	rs2245623	G	A	1188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.509;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=5.269;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-0.727;SB=-7.450e+02;SOR=0.654;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,50:90:99:1217,0,1063
1	156348344	rs2842851	C	T	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-1.256;SB=-6.801e+01;SOR=0.283;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:232,0,206
1	156351066	rs942679	C	A	1427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.571;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=3.870;HaplotypeScore=1.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-1.154;SB=-5.320e+02;SOR=1.091;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,54:102:99:1456,0,1461
1	156351699	rs3748569	G	A	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.202;HaplotypeScore=4.4628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.529;SB=-2.300e+02;SOR=0.446;VQSLOD=7.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,18:49:99:480,0,874
1	156351792	rs3748568	G	A	473.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.933;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-1.223;SB=-2.690e+02;SOR=0.516;VQSLOD=7.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,19:54:99:502,0,961
1	156352447	rs954916	G	T	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-2.881;SB=0.00;SOR=0.693;VQSLOD=9.45;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:164,0,175
1	156354367	rs6668857	A	G	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=14.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.194;SB=-2.011e+02;SOR=0.026;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:311,0,438
1	156374256	rs3431	C	T	735.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.803;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.225;HaplotypeScore=4.6016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-0.771;SB=-2.350e+02;SOR=0.519;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,28:53:99:764,0,669
1	156376680	rs6662064	A	G	534.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=0.00;SOR=5.421;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:563,42,0
1	156439000	rs1109751	T	C	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.787;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=0.490;SB=0.00;SOR=1.473;VQSLOD=10.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:349,0,106
1	156446242	rs2274316	C	A	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.639;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.422;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=1.023;SB=-1.680e+02;SOR=1.179;VQSLOD=7.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,21:55:99:519,0,924
1	156446450	rs12131289	C	T	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.029;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.529;SB=-3.400e+01;SOR=0.602;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:308,0,320
1	156446903	rs2274317	T	C	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=0.280;SB=-1.830e+02;SOR=0.432;VQSLOD=7.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,14:34:99:338,0,536
1	156450719	rs1185700	G	A	529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.974;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.390;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=1.260;SB=-2.480e+02;SOR=1.150;VQSLOD=7.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,21:54:99:558,0,772
1	156450740	rs1925950	G	A	640.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.000;SB=-4.280e+02;SOR=0.346;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,28:51:99:669,0,600
1	156452870	rs2282286	G	A	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.706;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.640;SB=-1.390e+02;SOR=0.148;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:313,0,244
1	156496188	rs6427315	A	G	1556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-4.770e+02;SOR=2.160;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1585,114,0
1	156498673	rs1171564	T	A	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-1.691;SB=-2.470e+02;SOR=0.633;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:470,0,645
1	156499969	rs1171566	T	C	724.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.631;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=0.222;SB=-3.270e+02;SOR=0.653;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,28:40:99:753,0,303
1	156502991	rs1609666	A	G	991.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.450;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=0.359;SB=-9.300e+01;SOR=0.682;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,31:54:99:1020,0,681
1	156504104	rs7552082	A	C	370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.231;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-0.515;SB=-2.203e+01;SOR=1.609;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:399,0,469
1	156504728	rs728918	G	A	151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-0.500;SB=-1.765e+00;SOR=1.402;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:180,0,288
1	156505061	rs942965	C	T	766.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.281;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=-1.124;SB=-2.410e+02;SOR=1.022;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,28:59:99:795,0,807
1	156508792	rs79402045	T	C	685.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.432;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.333;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-0.037;SB=-2.410e+02;SOR=1.140;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,26:43:99:714,0,428
1	156509552	rs1171570	C	G	1966.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-7.110e+02;SOR=1.524;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1995,147,0
1	156518379	rs744224	G	A	1035.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.801;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.177;SB=-5.070e+02;SOR=0.931;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,37:82:99:1064,0,1208
1	156520173	rs1778819	T	A	1636.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.870;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=0.265;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=-0.030;SB=-1.117e+03;SOR=0.237;VQSLOD=4.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1665,120,0
1	156520320	rs1778818	C	T	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.234;SB=-3.677e+01;SOR=0.551;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:388,0,169
1	156524221	rs6694580	G	T	368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.41;ReadPosRankSum=0.219;SB=-1.070e+02;SOR=0.610;VQSLOD=10.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,13:19:99:397,0,157
1	156526234	rs2489139	C	T	943.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-2.361e+02;SOR=2.468;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:972,72,0
1	156526387	rs11264498	C	G	645.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.284;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.649;HaplotypeScore=2.6550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-0.455;SB=-3.950e+02;SOR=0.327;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,24:45:99:674,0,604
1	156526444	rs2488269	T	C	948.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-2.750e+02;SOR=2.226;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:977,72,0
1	156531474	rs1171544	A	G	646.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-3.660e+02;SOR=0.990;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:675,48,0
1	156531871	rs1171545	A	G	1082.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;SB=-2.830e+02;SOR=2.376;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1111,81,0
1	156532207	rs1171546	T	C	374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.84;SB=0.00;SOR=4.804;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:403,30,0
1	156532250	rs1778828	T	C	531.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.93;SB=0.00;SOR=5.421;VQSLOD=7.33;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,14:14:42:560,42,0
1	156532252	rs1778827	C	T	545.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=0.00;SOR=5.421;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:574,42,0
1	156532344	rs7548309	T	G	742.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.246;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=6.157;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-1.499;SB=-4.010e+02;SOR=0.206;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,32:59:99:771,0,805
1	156532908	rs16837492	C	A	966.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.858;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=17.122;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-0.089;SB=-2.130e+02;SOR=2.368;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,35:79:99:995,0,1160
1	156532977	rs1171547	T	C	2298.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.85;SB=-1.273e+03;SOR=1.079;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2327,166,0
1	156534525	rs4661184	A	C	641.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.779;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=-1.855;SB=-3.500e+01;SOR=0.880;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:670,0,494
1	156534539	rs4661185	G	A	447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.911;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-2.097;SB=-4.076e+01;SOR=0.846;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:29:99:476,0,412
1	156536133	rs4382715	A	G	420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=0.00;SOR=4.977;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:449,33,0
1	156536221	rs2066377	G	C	1331.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-3.580e+02;SOR=2.303;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1360,99,0
1	156536251	rs947662	T	C	1601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-6.600e+02;SOR=1.656;VQSLOD=3.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1630,120,0
1	156536353	rs947663	A	G	2374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.27;SB=-1.456e+03;SOR=1.013;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2403,172,0
1	156536480	rs947664	T	C	543.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.39;SB=-1.205e+02;SOR=2.448;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:572,42,0
1	156538973	rs1778825	A	G	404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=0.00;SOR=5.136;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:433,36,0
1	156539019	rs11332475	CA	C	524.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.86;RPA=12,11;RU=A;SB=-7.433e+01;SOR=2.925;STR;VQSLOD=1.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:71:562,71,0
1	156539154	rs6427319	T	C	2166.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-8.750e+02;SOR=1.545;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2195,163,0
1	156553102	rs34924172	AG	A	388.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;DB;DP=35;ExcessHet=3.0103;FS=5.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;RPA=2,1;RU=G;ReadPosRankSum=-0.399;SB=-1.010e+02;SOR=1.949;STR;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:35:99:426,0,710
1	156556321	rs10796961	G	A	1381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.01;SB=-5.310e+02;SOR=1.552;VQSLOD=3.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1410,105,0
1	156561651	rs7516274	G	C	429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.65;SB=-1.643e+02;SOR=1.911;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:458,33,0
1	156562008	rs1925949	G	A	794.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-3.030e+02;SOR=1.519;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:823,60,0
1	156562143	rs942959	G	A	634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.41;SB=-1.991e+02;SOR=1.981;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:663,51,0
1	156562641	rs142064440	C	CCA	202.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.93;RPA=3,4;RU=CA;ReadPosRankSum=-0.402;SB=-1.764e+00;SOR=0.963;STR;VQSLOD=8.57;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,6:18:99:240,0,457
1	156563375	rs6427321	G	A	3174.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-1.980e+03;SOR=0.732;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3203,232,0
1	156563726	rs6427322	A	C	2456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-1.359e+03;SOR=1.012;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2485,178,0
1	156563813	rs6668178	G	A	1528.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-5.150e+02;SOR=1.911;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1557,114,0
1	156563852	rs942963	C	T	1024.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-2.311e+02;SOR=2.694;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:32:81:1053,81,0
1	156563898	rs1270	T	C	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-8.297e+01;SOR=2.670;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:440,33,0
1	156564922	rs3795733	C	T	435.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.963;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-0.401;SB=-3.130e+02;SOR=0.362;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,19:33:99:464,0,386
1	156565049	rs10637036	A	AAC	1849.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-8.710e+02;SOR=0.693;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1887,108,0
1	156565834	rs12024215	G	C	947.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.536;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=1.345;SB=-3.720e+02;SOR=1.206;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,37:65:99:976,0,834
1	156567496	rs879461	C	T	416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.516;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.898;SB=-9.400e+01;SOR=0.569;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:445,0,544
1	156589450	rs3795727	C	T	1181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.164;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=5.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-1.318;SB=-4.550e+02;SOR=1.329;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,49:108:99:1210,0,1412
1	156594364	rs12405992	T	C	702.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.636;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.073;SB=-2.880e+02;SOR=0.638;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,24:43:99:731,0,584
1	156617968	rs2277873	G	A	1106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.091;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.672;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.746;SB=-2.260e+02;SOR=1.223;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,38:79:99:1135,0,1087
1	156618768	rs4661209	T	G	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.12;ReadPosRankSum=1.098;SB=-4.176e+01;SOR=0.346;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:315,0,194
1	156621258	rs144857663	G	A	1040.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.532;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=4.006;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-0.690;SB=-3.270e+02;SOR=0.285;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,37:73:99:1069,0,1104
1	156622252	rs1056695	G	A	907.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.949;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.014;HaplotypeScore=2.4533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=0.314;SB=-3.970e+02;SOR=0.856;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,33:58:99:936,0,702
1	156626920	rs7524611	T	C	2038.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-8.780e+02;SOR=1.745;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2067,156,0
1	156627996	rs2298135	T	C	919.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.36;ReadPosRankSum=-1.640;SB=-6.300e+02;SOR=0.651;VQSLOD=8.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:67,43:110:99:948,0,1875
1	156628252	rs2298133	G	A	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.242;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.328;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-1.947;SB=-9.801e+01;SOR=0.105;VQSLOD=7.70;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,10:22:99:315,0,415
1	156628717	rs951964	C	A	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.242;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.509;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=-1.788;SB=-1.310e+02;SOR=0.654;VQSLOD=7.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:302,0,575
1	156629037	rs11360	A	G	190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.390;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=0.423;SB=-1.060e+02;SOR=0.175;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:219,0,236
1	156639000	rs1046650	A	G	544.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.67;SB=-1.941e+02;SOR=1.981;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:573,45,0
1	156639636	rs11549292	G	A	1590.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-5.850e+02;SOR=1.609;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1619,117,0
1	156639753	rs11582300	G	A	974.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-5.320e+02;SOR=0.760;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:75:1003,75,0
1	156640156	rs3748570	G	A	930.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-3.620e+02;SOR=1.609;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:959,72,0
1	156640308	rs3748571	C	T	1597.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-9.810e+02;SOR=0.770;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1626,120,0
1	156640503	rs3828043	C	T	1279.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-5.940e+02;SOR=1.402;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:96:1308,96,0
1	156646668	rs4278369	A	G	709.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-2.890e+02;SOR=1.802;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:738,57,0
1	156670545	rs4661213	C	T	629.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-1.653e+02;SOR=2.531;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:658,54,0
1	156693135	rs1133856	C	T	580.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.125;SB=-1.590e+02;SOR=0.544;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,21:45:99:609,0,763
1	156697056	rs3795737	T	C	1416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.745;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.522;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=1.952;SB=-8.540e+02;SOR=0.525;VQSLOD=7.51;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:60,52:112:99:1445,0,1717
1	156705469	.	G	A	602.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.366;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.911;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-0.176;SB=-1.240e+02;SOR=1.295;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,22:50:99:631,0,830
1	156705593	rs4311877	G	C	2738.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-1.745e+03;SOR=0.738;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2767,199,0
1	156706559	rs8658	A	G	2085.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-8.550e+02;SOR=1.536;VQSLOD=5.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2114,154,0
1	156707128	rs140737064	AAG	A	184.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=0.000;SB=-4.876e+01;SOR=0.307;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:222,0,161
1	156707775	rs6670122	T	G	2624.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-5.660e+02;SOR=2.864;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2653,193,0
1	156713512	rs4437869	C	T	436.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-2.331e+02;SOR=1.112;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:465,33,0
1	156713558	rs4399146	G	A	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=-0.868;SB=-5.200e+01;SOR=1.108;VQSLOD=7.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:156,0,322
1	156761618	rs2644615	C	T	542.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.329;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.436;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=1.013;SB=-3.370e+02;SOR=0.348;VQSLOD=7.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,22:54:99:571,0,869
1	156767253	rs6701637	C	T	731.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.430;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.585;SB=-3.870e+02;SOR=0.398;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,31:61:99:760,0,905
1	156785356	rs2150906	T	C	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=0.167;SB=-1.170e+02;SOR=0.673;VQSLOD=9.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,10:25:99:244,0,340
1	156813650	rs10908521	T	C	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.163;SB=-7.300e+01;SOR=0.859;VQSLOD=10.64;culprit=SOR	GT:AD:DP:GQ:PL	0/1:4,8:12:98:227,0,98
1	156814478	rs41267423	G	A	1328.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.187;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.636;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.430;SB=-6.830e+02;SOR=0.497;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,47:98:99:1357,0,1317
1	156846120	rs1800880	C	T	624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.768;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.241;SB=-5.300e+01;SOR=1.270;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,23:49:99:653,0,771
1	156848995	IPNMDB_536	C	T	627.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.978;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=6.565;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-0.581;SB=-2.203e+01;SOR=2.055;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:656,0,772
1	156874874	rs78436112	TGG	T	472.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;DB;DP=28;ExcessHet=3.0103;FS=5.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.51;RPA=10,8;RU=G;ReadPosRankSum=0.399;SB=-3.500e+01;SOR=2.985;STR;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:28:99:510,0,282
1	156874993	rs12048392	C	T	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=-0.210;SB=-3.401e+01;SOR=1.179;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:203,0,129
1	156875037	rs6676171	T	G	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=1.104;SB=-4.276e+01;SOR=0.399;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:255,0,126
1	156875092	rs4661074	G	A	510.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.111;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-0.447;SB=-1.850e+02;SOR=0.382;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:539,0,344
1	156875097	rs4661075	G	A	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.262;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=-0.081;SB=-1.720e+02;SOR=0.382;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:541,0,310
1	156875107	rs2644590	C	A	559.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.981;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.715;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=1.301;SB=-1.720e+02;SOR=0.314;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:588,0,444
1	156875985	rs2644593	G	A	1487.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-7.380e+02;SOR=1.345;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1516,111,0
1	156877457	rs1952294	T	C	1641.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-4.490e+02;SOR=2.448;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1670,123,0
1	156882261	rs57731889	C	T	969.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.181;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=1.920;SB=-5.740e+02;SOR=0.746;VQSLOD=8.80;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:38,37:75:99:998,0,982
1	156883493	rs11264581	G	A	754.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.600;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-0.173;SB=-4.090e+02;SOR=0.349;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,29:49:99:783,0,537
1	156883546	rs12137505	A	G	2074.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.103e+03;SOR=1.179;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2103,160,0
1	156884365	rs749256	T	C	1075.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-7.497e+01;SOR=4.332;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1104,81,0
1	156902259	rs822430	G	A	1003.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-3.660e+02;SOR=2.049;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1032,75,0
1	156907081	rs945508	T	C	2970.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-1.790e+03;SOR=0.693;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2999,223,0
1	156907115	rs868188	T	C	3110.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-1.510e+03;SOR=1.046;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3139,229,0
1	156914240	rs5778015	CCATT	C	5070.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;RPA=8,7;RU=CATT;SB=-2.134e+03;SOR=1.013;STR;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:107:99:5108,253,0
1	156933613	rs1336150	G	T	355.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=0.00;SOR=4.804;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:384,30,0
1	156939175	rs1336149	C	T	959.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.42;SB=-5.370e+02;SOR=1.002;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:72:988,72,0
1	156948956	rs3831270	CCCT	C	4003.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.78;RPA=2,1;RU=CCT;SB=-8.170e+02;SOR=2.584;STR;VQSLOD=3.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:72:99:4041,211,0
1	156949153	.	CTT	C	293.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQ0=0;MQRankSum=0.957;POSITIVE_TRAIN_SITE;QD=10.49;RPA=22,20;RU=T;ReadPosRankSum=1.068;SB=-2.049e+01;SOR=1.981;STR;VQSLOD=2.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:47:99:296,0,155
1	156954267	rs6427339	C	T	3757.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.515;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.30;ReadPosRankSum=-1.313;SB=-1.710e+03;SOR=0.582;VQSLOD=2.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,123:124:99:3786,277,0
1	156954384	rs6427340	T	C	1511.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-7.797e+01;SOR=5.330;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1540,126,0
1	156956057	rs3737599	T	C	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;SB=0.00;SOR=6.439;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:867,66,0
1	157043969	rs16865471	T	C	337.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-8.097e+01;SOR=2.494;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:366,27,0
1	157069154	rs16838075	A	G	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.835;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.665;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.000;SB=-1.000e+02;SOR=1.492;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:323,0,236
1	157069261	rs16838078	A	C	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.533;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-1.355;SB=-5.300e+01;SOR=0.707;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:160,0,216
1	157095470	rs2231856	A	G	1954.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=4.548;HaplotypeScore=3.9151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-0.736;SB=-1.121e+03;SOR=0.481;VQSLOD=7.10;culprit=DP	GT:AD:DP:GQ:PL	0/1:96,73:169:99:1983,0,2585
1	157246074	rs61799756	G	C	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=0.217;SB=-8.700e+01;SOR=0.412;VQSLOD=9.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:135,0,249
1	157485275	rs3811036	T	G	602.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.823;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.344;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=0.653;SB=-1.640e+02;SOR=0.468;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,21:47:99:631,0,774
1	157485561	rs3811035	G	A	1509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-6.570e+02;SOR=1.179;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:45:99:1538,123,0
1	157485720	rs1002967	T	C	312.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-4.276e+01;SOR=3.258;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:341,27,0
1	157488085	rs1571967	C	A	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.206;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=7.334;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.417;SB=-1.821e+02;SOR=0.091;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,17:31:99:454,0,454
1	157488435	rs74799115	G	A	1231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.414;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=7.574;HaplotypeScore=2.6308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-0.307;SB=-5.640e+02;SOR=0.248;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1260,0,1325
1	157488487	rs6663265	C	T	1503.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.285;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.7317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.288;SB=-6.230e+02;SOR=0.738;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,55:119:99:1532,0,1750
1	157488760	rs12122119	C	A	467.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.629;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.153;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-0.079;SB=-9.732e-01;SOR=2.419;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:496,0,493
1	157488773	rs12144232	G	A	381.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.909;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.188;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.163;SB=-9.732e-01;SOR=2.448;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:410,0,386
1	157488810	rs12141689	T	A	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-0.126;SB=0.00;SOR=0.473;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:198,0,276
1	157489488	rs3811032	T	C	667.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.605;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-1.298;SB=-2.500e+02;SOR=0.330;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,26:59:99:696,0,1074
1	157489516	rs1332714	T	G	1206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.268;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=6.644;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=0.287;SB=-3.280e+02;SOR=1.546;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1235,0,881
1	157489535	rs3827757	G	A	954.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.598;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=1.193;SB=-4.800e+02;SOR=0.686;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,37:82:99:983,0,1209
1	157489537	rs368910462	C	T	984.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.01;ReadPosRankSum=0.879;SB=-4.670e+02;SOR=0.765;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,38:82:99:1013,0,1184
1	157491173	rs6427383	T	A	255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.711;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=0.168;SB=-9.900e+01;SOR=0.368;VQSLOD=7.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:28:99:284,0,522
1	157493754	rs1888872	G	A	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=2.881;SB=0.00;SOR=0.693;VQSLOD=8.43;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:127,0,175
1	157494106	rs34273689	C	T	964.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=5.013;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=1.776;SB=-4.890e+02;SOR=0.630;VQSLOD=7.34;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,33:63:99:993,0,768
1	157494357	rs113588617	GA	G	447.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;RPA=5,4;RU=A;ReadPosRankSum=-0.013;SB=-2.290e+02;SOR=0.624;STR;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,19:44:99:485,0,623
1	157494415	rs73011532	T	G	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.115;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=-0.452;SB=-1.980e+02;SOR=0.836;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,17:40:99:394,0,549
1	157497160	rs11264750	A	G	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.48;ReadPosRankSum=-0.546;SB=0.00;SOR=0.105;VQSLOD=9.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:77:77,0,360
1	157497263	rs3761961	T	C	1765.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-5.740e+02;SOR=2.093;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1794,129,0
1	157504143	rs73011564	G	A	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=-0.313;SB=-1.490e+02;SOR=0.631;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,14:37:99:371,0,695
1	157504422	rs73011567	C	T	883.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.209;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.380;HaplotypeScore=3.4813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.841;SB=-5.080e+02;SOR=0.376;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,31:65:99:912,0,974
1	157504433	rs73011568	C	G	937.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.977;HaplotypeScore=2.5220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=0.296;SB=-4.400e+02;SOR=0.495;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,33:64:99:966,0,824
1	157508882	rs6427384	C	T	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.77;ReadPosRankSum=-0.946;SB=-2.902e+01;SOR=1.230;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:483,0,259
1	157509025	rs2012199	C	T	1893.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.141e+03;SOR=0.793;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1922,141,0
1	157550066	rs10489673	T	C	2367.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-1.308e+03;SOR=0.828;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2396,178,0
1	157557701	rs2777962	G	A	1225.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-3.040e+02;SOR=2.362;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1254,93,0
1	157567751	rs1361889	A	G	3244.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-1.160e+03;SOR=1.911;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3273,238,0
1	157567808	rs113311460	C	T	1023.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.744;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=-0.481;SB=-1.330e+02;SOR=0.892;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,33:55:99:1052,0,641
1	157599858	rs2777997	C	T	522.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.51;SB=-3.200e+02;SOR=1.022;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:551,39,0
1	157599917	rs2758629	A	G	442.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.05;SB=-3.180e+02;SOR=0.804;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:33:471,33,0
1	157599937	rs2777998	T	A	389.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.98;SB=-2.001e+02;SOR=1.473;VQSLOD=4.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:418,30,0
1	157599988	rs2758628	T	C	388.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-8.097e+01;SOR=2.670;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:417,30,0
1	157600009	rs2777999	G	T	290.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.08;SB=-7.797e+01;SOR=2.303;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:319,24,0
1	157606002	rs2758697	G	A	707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-2.800e+02;SOR=1.708;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:736,54,0
1	157606013	rs2758696	G	A	747.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-3.510e+02;SOR=1.358;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:57:776,57,0
1	157606064	rs2758695	C	T	889.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-4.300e+02;SOR=1.022;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:69:918,69,0
1	157606085	rs113174450	C	A	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.511;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-0.731;SB=-1.570e+02;SOR=0.515;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:31:99:353,0,605
1	157606294	rs2248138	T	A	887.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-2.730e+02;SOR=2.066;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:916,66,0
1	157612420	rs9427302	C	T	274.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.98;SB=-1.543e+02;SOR=1.270;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:303,21,0
1	157612470	rs2758649	G	A	300.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.07;SB=-1.613e+02;SOR=1.445;VQSLOD=3.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:329,24,0
1	157718283	rs6696643	A	T	2121.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-8.100e+02;SOR=1.785;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2150,160,0
1	157744526	rs140480046	G	A	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=0.171;SB=0.00;SOR=1.112;VQSLOD=10.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:296,0,202
1	157768185	rs9426992	T	C	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.431;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=-0.565;SB=-1.290e+02;SOR=1.041;VQSLOD=7.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,14:33:99:319,0,479
1	157771880	rs4971154	C	T	3421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-2.232e+03;SOR=0.763;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3450,253,0
1	157771966	rs145252437	T	C	1702.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.316;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=3.658;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-0.569;SB=-9.880e+02;SOR=0.398;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,59:106:99:1731,0,1387
1	157802748	rs2777815	C	G	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=0.00;SOR=4.804;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:412,30,0
1	157802877	rs2765500	T	C	1979.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-8.750e+02;SOR=1.341;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2008,147,0
1	157802979	rs2261295	C	T	2695.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-1.323e+03;SOR=1.179;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2724,202,0
1	157806006	rs2765503	G	A	2351.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-1.187e+03;SOR=1.121;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2380,175,0
1	157811392	rs2260040	G	A	1526.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-6.070e+02;SOR=1.802;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1555,114,0
1	158045749	rs11264900	A	G	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-0.458;SB=-1.090e+02;SOR=0.446;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:317,0,274
1	158047657	rs12133744	G	A	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.035;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.93;ReadPosRankSum=-0.504;SB=0.00;SOR=2.712;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,14:17:73:469,0,73
1	158054379	rs927662	A	G	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.176;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.513;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.100;SB=-6.501e+01;SOR=0.180;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,19:46:99:580,0,929
1	158056172	rs55705020	T	G	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-1.778;SB=0.00;SOR=0.392;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:258,0,420
1	158056213	rs67978907	A	AAC,AACAC	1687.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.387;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.94;RPA=13,14,15;RU=AC;ReadPosRankSum=1.268;SB=-4.319e+01;SOR=4.615;STR;VQSLOD=4.43;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,28,12:41:99:1725,458,373,985,0,980
1	158056299	rs7367384	C	G	1098.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.236;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=5.934;HaplotypeScore=7.0924;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=-0.843;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-0.606;SB=-4.960e+02;SOR=0.273;VQSLOD=3.900e-03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:62,47:109:99:1127,0,1870
1	158056549	rs41273463	G	C	1250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.564;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.1789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.997;SB=-2.040e+02;SOR=0.826;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,46:81:99:1279,0,943
1	158056651	rs7364493	A	G	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=1.359;SB=-4.176e+01;SOR=0.293;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:217,0,160
1	158057420	rs7514301	A	T	701.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.292;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=-0.634;SB=-3.440e+02;SOR=0.602;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,29:54:99:730,0,650
1	158057691	rs3820676	A	C	966.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.484;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=8.212;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=-1.129;SB=-3.770e+02;SOR=1.034;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,33:66:99:995,0,1003
1	158058109	rs6427419	C	A	1141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.836;HaplotypeScore=3.2416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.069;SB=-4.780e+02;SOR=0.572;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1170,0,1222
1	158061043	rs2274165	G	A	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=0.497;SB=0.00;SOR=0.693;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:127,0,179
1	158064439	rs41273465	C	A	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.357;HaplotypeScore=2.3984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=1.331;SB=-1.550e+02;SOR=1.095;VQSLOD=7.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,14:36:99:367,0,640
1	158066669	rs41273471	G	A	1136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=0.910;SB=-4.360e+02;SOR=0.843;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,35:68:99:1165,0,834
1	158066834	rs6427420	A	G	1322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.758;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-0.208;SB=-5.330e+02;SOR=0.841;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,47:102:99:1351,0,1581
1	158067047	rs874844	A	C	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=1.002;SB=0.00;SOR=0.693;VQSLOD=10.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:316,0,300
1	158067060	rs11339854	TG	T	163.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.47;RPA=5,4;RU=G;ReadPosRankSum=-0.319;SB=0.00;SOR=1.863;STR;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,6:14:52:201,0,52
1	158146946	rs3021477	T	C	438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.265;SB=-3.430e+02;SOR=0.719;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,21:46:99:467,0,656
1	158153996	rs426336	T	C	873.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;SB=-1.961e+02;SOR=2.584;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:902,66,0
1	158224575	rs370074413	CTGTGTGTGTG	C,CTG	1883.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.801;DB;DP=36;ExcessHet=3.0103;FS=15.855;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.54;RPA=24,19,20;RU=TG;ReadPosRankSum=-0.915;SB=-1.680e+02;SOR=3.694;STR;VQSLOD=4.68;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,12,8:36:99:1921,250,368,299,0,290
1	158224825	rs411089	C	T	1781.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.94;SB=-5.500e+02;SOR=2.004;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1810,135,0
1	158226465	rs34315183	CA	C	227.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;DB;DP=18;ExcessHet=3.0103;FS=9.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;RPA=14,13;RU=A;ReadPosRankSum=-0.106;SB=-1.417e+01;SOR=3.912;STR;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,14:18:59:265,0,59
1	158297887	rs3176846	T	C	1109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.182;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=-0.975;SB=-2.070e+02;SOR=0.525;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,37:61:99:1138,0,680
1	158298693	rs75664720	A	C	189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=-0.027;SB=-9.200e+01;SOR=0.502;VQSLOD=8.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,9:26:99:218,0,501
1	158299454	rs374638151	GA	G	1126.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.83;RPA=8,7;RU=A;ReadPosRankSum=0.211;SB=-5.220e+02;SOR=0.693;STR;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,52:109:99:1164,0,1318
1	158323253	rs57394063	T	C	1239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=2.484;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.426;SB=-7.400e+02;SOR=0.859;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,50:110:99:1268,0,1473
1	158324425	rs1065457	A	G	1633.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-9.190e+02;SOR=0.922;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1662,123,0
1	158326447	.	C	CT	244.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;DP=29;ExcessHet=3.0103;FS=9.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.79;RPA=11,12;RU=T;ReadPosRankSum=-0.110;SB=-4.100e+01;SOR=2.276;STR;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:29:99:282,0,206
1	158368315	rs60530245	G	A	3193.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-8.050e+02;SOR=2.486;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3222,244,0
1	158368541	rs34465440	A	G	5601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-2.602e+03;SOR=1.130;VQSLOD=5.32;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,162:162:99:5630,412,0
1	158368846	rs6662382	T	C	2352.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.641;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.79;ReadPosRankSum=1.640;SB=-1.180e+03;SOR=0.721;VQSLOD=5.01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:1,73:74:99:2381,174,0
1	158389209	rs66914850	A	AG	289.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.101;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=0.722;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-1.681;SB=-4.100e+01;SOR=1.179;VQSLOD=3.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:18:99:327,0,298
1	158389659	rs58605957	T	C	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=-0.496;SB=-4.176e+01;SOR=0.693;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:328,0,121
1	158390252	rs12239443	T	G	987.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.940;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=0.138;SB=-5.000e+02;SOR=0.813;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,34:59:99:1016,0,674
1	158390501	rs34616883	G	A	770.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.146;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=10.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-1.520;SB=-3.780e+02;SOR=0.389;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,30:74:99:799,0,1284
1	158390834	rs10489830	C	A	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.666;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.09;ReadPosRankSum=0.113;SB=-5.000e+01;SOR=1.106;VQSLOD=7.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:30:99:241,0,630
1	158424637	rs1844787	A	C	557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-2.590e+02;SOR=1.292;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:586,42,0
1	158435250	rs1002599	C	T	1613.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-4.140e+02;SOR=2.352;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1642,120,0
1	158435278	rs1573519	G	A	1777.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-8.610e+02;SOR=1.316;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1806,132,0
1	158436299	rs4657080	T	C	1915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.59;SB=-8.920e+02;SOR=1.508;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1944,138,0
1	158436354	rs67123344	AT	A	850.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.59;RPA=8,7;RU=T;SB=-8.951e+01;SOR=4.047;STR;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:35:96:888,96,0
1	158450238	rs3820678	G	A	1781.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SB=-6.740e+02;SOR=1.609;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1810,138,0
1	158450314	rs6679056	A	G	1534.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-8.890e+02;SOR=0.859;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1563,114,0
1	158450382	rs1418843	C	T	1718.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-8.760e+02;SOR=1.118;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1747,129,0
1	158493852	rs7514968	A	T	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.48;SB=-1.603e+02;SOR=1.765;VQSLOD=4.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:399,30,0
1	158493890	rs7525362	G	C	627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-2.590e+02;SOR=1.508;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:656,48,0
1	158494110	rs7515245	A	G	368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=0.00;SOR=4.804;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:397,30,0
1	158495001	rs6663277	A	T	586.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-3.600e+02;SOR=0.793;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:615,45,0
1	158495431	rs6674656	G	A	270.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.62;SB=-2.001e+02;SOR=0.859;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:299,21,0
1	158507157	rs2051665	A	T	1210.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-3.200e+02;SOR=2.554;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1239,93,0
1	158507160	rs2051666	T	G	1279.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-3.580e+02;SOR=2.419;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1308,96,0
1	158507184	rs2051068	A	G	1415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-5.380e+02;SOR=1.765;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1444,105,0
1	158507222	rs5778082	GA	G	1474.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.83;RPA=8,7;RU=A;SB=-6.930e+02;SOR=0.892;STR;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1512,159,0
1	158507398	rs2051067	G	T	472.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-1.165e+02;SOR=2.303;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:501,39,0
1	158532405	rs7526514	T	G	514.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SB=-7.697e+01;SOR=3.126;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:543,39,0
1	158533140	rs12080815	A	G	1889.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=-1.066e+03;SOR=0.831;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1918,138,0
1	158533224	rs12081915	A	G	1699.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.00;SB=-9.010e+02;SOR=0.952;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1728,126,0
1	158549264	rs863360	G	A	1442.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-8.300e+02;SOR=0.784;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1471,108,0
1	158549420	rs863361	C	T	1628.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-9.880e+02;SOR=0.693;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1657,123,0
1	158549492	rs863362	C	T	1654.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-9.000e+02;SOR=0.952;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1683,123,0
1	158549511	rs863363	A	G	1591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-6.670e+02;SOR=1.329;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1620,120,0
1	158580887	rs3768535	T	C	404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=0.00;SOR=4.977;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:433,33,0
1	158580921	.	G	GCACACACACA	1006.74	PASS	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;RPA=17,22;RU=CA;SB=0.00;SOR=4.804;STR;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:17:30:1044,30,0
1	158582646	rs2251969	T	C	2538.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-1.397e+03;SOR=0.941;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:81:99:2567,196,0
1	158584091	rs952094	A	G	495.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-2.800e+02;SOR=0.941;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:524,39,0
1	158584103	.	G	GA	180.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;DP=17;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.754;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.05;RPA=12,13;RU=A;ReadPosRankSum=1.828;SB=-5.303e+01;SOR=1.802;STR;VQSLOD=0.149;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,11:17:44:218,0,44
1	158587390	rs857716	C	T	1818.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-7.360e+02;SOR=1.609;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1847,135,0
1	158587784	rs857717	T	G	670.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-3.600e+02;SOR=1.085;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:699,51,0
1	158587858	rs28525570	G	A	798.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-3.980e+02;SOR=1.136;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:827,60,0
1	158588916	rs7553252	C	G	627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-1.633e+02;SOR=2.179;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:656,48,0
1	158592935	rs3753068	G	A	5046.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-2.146e+03;SOR=1.436;VQSLOD=3.98;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,157:157:99:5075,370,0
1	158595824	rs56954229	T	C	1805.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=-3.520e+02;SOR=3.014;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1834,135,0
1	158595842	rs11265038	C	A	2075.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-5.910e+02;SOR=2.093;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2104,160,0
1	158596524	rs12088990	A	G	1153.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-1.921e+02;SOR=3.126;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:87:1182,87,0
1	158597507	rs3737515	G	C	2859.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-1.165e+03;SOR=1.662;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2888,211,0
1	158606449	rs3738791	G	T	2050.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-1.040e+03;SOR=0.986;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2079,157,0
1	158607788	rs2518492	T	G	1203.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-3.660e+02;SOR=2.303;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1232,93,0
1	158609300	rs17635857	C	G	2585.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-1.319e+03;SOR=1.151;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2614,199,0
1	158612236	rs863931	A	G	2863.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.35;SB=-1.748e+03;SOR=0.957;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2892,214,0
1	158612756	rs34973695	G	A	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.265;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.331;HaplotypeScore=1.8300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=1.568;SB=-1.640e+02;SOR=1.101;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,21:43:99:564,0,585
1	158614198	rs6702040	C	T	1685.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-5.090e+02;SOR=2.215;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1714,129,0
1	158618223	rs857677	C	T	844.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=-1.483e+02;SOR=2.925;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:873,66,0
1	158618480	rs11265044	A	T	688.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.33;SB=-4.076e+01;SOR=4.407;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:717,54,0
1	158619728	rs2482965	A	C	1917.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.61;SB=-8.990e+02;SOR=1.077;VQSLOD=3.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1946,141,0
1	158631257	rs12039268	C	T	1982.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;SB=-3.100e+02;SOR=3.500;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2011,153,0
1	158637865	rs5778087	GA	G	143.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.465;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;MQRankSum=0.603;POSITIVE_TRAIN_SITE;QD=11.96;RPA=16,15;RU=A;ReadPosRankSum=1.014;SB=-1.204e+01;SOR=2.147;STR;VQSLOD=1.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,11:15:7:180,7,0
1	158644105	rs703116	T	A	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.436;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=6.396;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=1.379;SB=-2.160e+02;SOR=0.127;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:482,0,491
1	158647495	rs325996	A	T	1865.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-8.000e+02;SOR=1.532;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1894,135,0
1	158647522	rs703121	A	G	640.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.070;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=8.975;HaplotypeScore=2.7188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=1.438;SB=-2.040e+02;SOR=1.818;VQSLOD=6.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,25:68:99:669,0,1140
1	158647631	rs325995	T	A	1448.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-5.020e+02;SOR=1.981;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1477,111,0
1	158647669	rs703122	T	C	508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.159;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.817;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.281;SB=-6.300e+01;SOR=1.426;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:537,0,485
1	158647676	rs371000477	G	C	419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.555;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.083;SB=-6.900e+01;SOR=0.327;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:448,0,492
1	158654786	rs385096	C	T	440.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=0.00;SOR=5.136;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:469,36,0
1	158654852	rs857937	A	G	574.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.846;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.700;HaplotypeScore=2.5243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.032;SB=-1.650e+02;SOR=0.314;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:37:99:603,0,377
1	158655036	rs435080	G	A	2016.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-1.138e+03;SOR=1.054;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2045,147,0
1	158655162	rs2564859	C	A	843.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;SB=-3.480e+02;SOR=1.688;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:63:872,63,0
1	158656281	rs2564858	T	C	727.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-2.840e+02;SOR=1.708;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:756,54,0
1	158656347	rs72020964	C	CAGAG,CAG	1683.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.633;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.13;RPA=9,11,10;RU=AG;ReadPosRankSum=1.397;SB=-8.300e+02;SOR=0.756;STR;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,25,6:34:99:1721,204,197,1043,0,985
1	158656432	rs368011566	G	GA	444.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=1.022;POSITIVE_TRAIN_SITE;QD=9.88;RPA=11,12;RU=A;ReadPosRankSum=0.307;SB=-2.220e+02;SOR=0.602;STR;VQSLOD=2.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,23:49:99:482,0,400
1	158656632	.	G	GAA	343.73	PASS	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.64;RPA=8,10;RU=A;SB=-4.019e+01;SOR=2.584;STR;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:15:36:378,36,0
1	158656641	rs12096997	C	A	361.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.15;SB=-4.176e+01;SOR=3.611;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:390,30,0
1	158656653	rs452233	A	T	335.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-4.176e+01;SOR=3.258;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:364,27,0
1	158687896	rs857705	C	T	1187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.804;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=8.454;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.131;SB=-4.630e+02;SOR=1.494;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,42:91:99:1216,0,1277
1	158694444	rs432335	A	G	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=4.832;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.05;ReadPosRankSum=0.114;SB=-9.000e+01;SOR=0.132;VQSLOD=7.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:134,0,252
1	158747492	rs857835	A	G	1101.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-4.490e+02;SOR=1.675;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1130,81,0
1	158909164	rs2325704	C	A	1588.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-4.320e+02;SOR=2.352;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1617,123,0
1	158943295	rs66916979	T	TCA	338.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;RPA=16,17;RU=CA;SB=0.00;SOR=4.804;STR;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:376,30,0
1	158946198	.	G	T	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.88;ReadPosRankSum=1.113;SB=0.00;SOR=0.693;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:127,0,173
1	158946629	rs72259836	A	AATATATGTAT	3236.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;RPA=1,2;RU=ATATATGTAT;SB=-6.681e+02;SOR=2.387;STR;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:51:81:3274,81,0
1	158946658	rs145640162	CTATATATATATATATATATATATATATA	C	2401.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.59;RPA=24,10;RU=TA;SB=0.00;SOR=4.615;STR;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:27:27:2439,27,0
1	158986477	rs866484	G	C	2199.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-1.071e+03;SOR=1.085;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2228,163,0
1	158987941	rs856046	A	G	551.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.42;SB=-4.076e+01;SOR=4.047;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:580,42,0
1	159002222	rs861318	A	G	382.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=0.00;SOR=4.804;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:411,30,0
1	159002301	rs2518553	T	C	847.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=-4.010e+02;SOR=1.329;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:63:876,63,0
1	159002377	rs1057027	C	A	1375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-8.590e+02;SOR=0.693;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1404,102,0
1	159002389	rs1057028	T	A	1334.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-7.780e+02;SOR=0.836;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1363,99,0
1	159032702	rs80297331	C	T	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.216;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.580;SB=-3.500e+01;SOR=0.540;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:319,0,425
1	159162024	rs4656165	G	C	799.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.814;SB=-2.360e+02;SOR=0.787;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,27:59:99:828,0,889
1	159163119	rs862990	C	T	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=0.00;SOR=4.804;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
1	159169463	rs3027001	C	T	1312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.746;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=3.238;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=1.085;SB=-6.210e+02;SOR=1.022;VQSLOD=7.39;culprit=DP	GT:AD:DP:GQ:PL	0/1:78,55:133:99:1341,0,2044
1	159169641	rs862999	T	C	2278.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=-1.225e+03;SOR=1.252;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2307,172,0
1	159174824	rs863001	G	C	942.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-4.750e+02;SOR=1.284;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:69:971,69,0
1	159174885	rs7550207	T	C	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.419;HaplotypeScore=2.3118;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=-0.858;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.106;SB=-5.900e+01;SOR=2.030;VQSLOD=0.155;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,10:21:99:266,0,255
1	159174920	rs863002	C	T	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=1.230;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=0.845;SB=-6.500e+01;SOR=1.329;VQSLOD=3.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,8:18:99:205,0,255
1	159175004	rs17838198	CT	C	268.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;RPA=4,3;RU=T;SB=-6.997e+01;SOR=2.093;STR;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:10:27:306,27,0
1	159175193	rs3027016	A	G	820.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.997;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.052;SB=-2.340e+02;SOR=0.605;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,31:60:99:849,0,856
1	159175354	rs12075	G	A	3929.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-2.380e+03;SOR=0.758;VQSLOD=5.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3958,292,0
1	159272060	rs2251746	T	C	375.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.980;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=0.562;SB=-1.310e+02;SOR=0.970;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,15:36:99:404,0,620
1	159320979	rs10908710	G	A	656.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-0.499;SB=-3.220e+02;SOR=0.594;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,25:57:99:685,0,777
1	159321675	rs4443888	G	T	66.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.07;ReadPosRankSum=0.179;SB=-2.501e+01;SOR=1.535;VQSLOD=6.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:95:95,0,224
1	159402584	.	G	GT	2123.73	PASS	AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;RPA=2,3;RU=T;SB=-6.300e+02;SOR=1.961;STR;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:61:99:2161,172,0
1	159402695	rs4491058	A	C	501.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-8.097e+01;SOR=3.258;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:530,42,0
1	159409196	rs6691297	T	C	831.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-2.221e+02;SOR=2.066;VQSLOD=7.28;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,27:27:63:860,63,0
1	159409533	rs10908721	G	A	1365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.14;SB=-3.300e+02;SOR=2.670;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1394,105,0
1	159409734	rs10908722	G	T	3048.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.50;SB=-1.645e+03;SOR=0.855;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3077,229,0
1	159409857	rs12048482	A	G	1532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.933;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.485;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-0.795;SB=-8.600e+02;SOR=0.774;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,55:112:99:1561,0,1532
1	159410340	rs12409540	T	A	1127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.532;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=2.119;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=-0.037;SB=-5.330e+02;SOR=1.375;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,42:76:99:1156,0,695
1	159505101	rs35393723	G	A	2174.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.90;SB=-7.880e+02;SOR=1.460;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2203,163,0
1	159558258	rs2808661	A	G	4464.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-2.931e+03;SOR=0.706;VQSLOD=5.80;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4493,322,0
1	159558672	rs28383573	G	T	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=1.376;SB=-3.100e+01;SOR=0.446;VQSLOD=8.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:22:99:184,0,477
1	159684047	rs113155790	CCACACACA	C	702.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;DB;DP=16;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.47;RPA=19,15;RU=CA;ReadPosRankSum=0.217;SB=-2.010e+02;SOR=0.169;STR;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:740,0,437
1	159752066	rs1129923	G	A	1216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.845;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=6.382;HaplotypeScore=2.9463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.046;SB=-5.270e+02;SOR=1.359;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,47:104:99:1245,0,1544
1	159776366	rs61821626	G	A	663.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.995;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=1.051;SB=-4.570e+02;SOR=0.629;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,30:70:99:692,0,1225
1	159778699	rs12042065	G	A	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.742;SB=-1.410e+02;SOR=0.610;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:347,0,427
1	159778910	rs72700615	G	A	493.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.460;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.411;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=1.452;SB=-2.020e+02;SOR=0.357;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:522,0,680
1	159778983	rs12083967	T	C	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-0.605;SB=-9.800e+01;SOR=0.368;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:279,0,278
1	159783559	rs58240276	C	T	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.736;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=0.339;SB=-3.200e+01;SOR=2.494;VQSLOD=6.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,10:13:78:309,0,78
1	159784141	rs61821659	G	A	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.458;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=0.632;SB=-1.270e+02;SOR=0.704;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,19:43:99:475,0,692
1	159784160	rs61823160	T	C	495.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.118;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-1.277;SB=-1.440e+02;SOR=0.495;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,19:37:99:524,0,545
1	159785284	rs4411129	C	G	3247.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SB=-1.169e+03;SOR=1.814;VQSLOD=7.01;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3276,238,0
1	159785413	rs61823162	C	T	1758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.422;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.678;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.981;SB=-9.270e+02;SOR=0.588;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,70:131:99:1787,0,1574
1	159785425	rs4443889	A	G	1629.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.690;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-0.474;SB=-8.440e+02;SOR=0.595;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,65:126:99:1658,0,1564
1	159785477	rs61823163	G	A	843.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.280;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.358;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-0.419;SB=-1.300e+02;SOR=1.136;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,30:61:99:872,0,916
1	159785518	rs61823164	G	C	540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.667;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-0.484;SB=-7.300e+01;SOR=0.407;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:569,0,475
1	159799599	.	C	CA	1059.73	PASS	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;RPA=3,4;RU=A;SB=-2.580e+02;SOR=2.376;STR;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1097,93,0
1	159802627	rs2494480	A	C	1301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.548;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=5.311;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.391;SB=-4.940e+02;SOR=1.324;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,45:95:99:1330,0,1366
1	159802683	rs3795331	G	A	1611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=4.449;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.650;SB=-9.270e+02;SOR=0.599;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,61:116:99:1640,0,1394
1	159824967	rs2501340	G	C	427.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-1.245e+02;SOR=2.147;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:456,33,0
1	159825061	rs2501339	G	C	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.146;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=-1.401;SB=-1.640e+02;SOR=0.616;VQSLOD=7.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,13:32:99:317,0,491
1	159825916	rs11587021	C	T	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.219;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.779;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-0.194;SB=-5.000e+01;SOR=1.650;VQSLOD=7.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:323,0,487
1	159828128	rs2494504	A	G	2080.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-9.450e+02;SOR=1.270;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2109,154,0
1	159828746	rs2501337	G	A	372.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.787;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.909;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=0.000;SB=-1.720e+02;SOR=0.223;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:401,0,309
1	159832425	rs2494507	G	A	406.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.60;ReadPosRankSum=0.000;SB=-4.076e+01;SOR=0.551;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:435,0,186
1	159842088	rs2494518	T	A	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.535;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-0.973;SB=-9.200e+01;SOR=1.096;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:545,0,567
1	159842103	rs11265289	C	T	579.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-0.080;SB=-1.270e+02;SOR=0.882;VQSLOD=9.30;culprit=SOR	GT:AD:DP:GQ:PL	0/1:25,20:45:99:608,0,707
1	159842566	rs4545332	T	A	84.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=5.756;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.52;ReadPosRankSum=-0.895;SB=-1.807e+01;SOR=1.465;VQSLOD=6.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:113,0,318
1	159842691	rs4460634	C	G	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.59;ReadPosRankSum=0.439;SB=-1.150e+02;SOR=0.813;VQSLOD=7.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,10:35:99:189,0,647
1	159850401	rs7550537	C	G	602.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.480;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=6.396;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.141;SB=-1.580e+02;SOR=1.702;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,22:49:99:631,0,796
1	159860259	rs2501320	G	A	1467.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.604;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=4.737;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-0.524;SB=-8.240e+02;SOR=0.868;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1496,0,1341
1	159860547	rs35075962	C	CT	51.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.04;RPA=19,20;RU=T;ReadPosRankSum=1.409;SB=-1.810e+00;SOR=0.963;STR;VQSLOD=7.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:23:89:89,0,130
1	159889686	.	G	A	625.77	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.21;SB=-3.090e+02;SOR=1.426;VQSLOD=3.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:654,48,0
1	159897681	.	TA	T	805.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.227;DP=50;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.65;MQ0=0;MQRankSum=0.672;POSITIVE_TRAIN_SITE;QD=17.91;RPA=15,14;RU=A;ReadPosRankSum=0.171;SB=-4.100e+02;SOR=0.247;STR;VQSLOD=0.249;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,41:50:39:794,39,0
1	159912533	rs112448119	AGTGT	A,AGT	1294.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQ0=0;QD=32.66;RPA=13,11,12;RU=GT;SB=-1.960e+02;SOR=3.098;STR;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,19,7:29:99:1332,278,233,756,0,681
1	159922369	rs2840583	C	T	1136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=4.590;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=-0.087;SB=-5.340e+02;SOR=0.243;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,44:59:99:1165,0,362
1	159922959	rs2249707	C	T	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.592;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=-0.868;SB=-3.976e+01;SOR=0.412;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:313,0,197
1	159923111	rs2789417	T	G	1673.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.772;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=2.453;HaplotypeScore=4.5933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.666;SB=-6.310e+02;SOR=0.479;VQSLOD=7.46;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,61:143:99:1702,0,2326
1	159942846	rs148354042	G	A	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.932;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-1.161;SB=-1.165e+02;SOR=0.175;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:84:227,0,84
1	160012406	rs12729701	A	G	849.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.258;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.966;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=0.560;SB=-2.920e+02;SOR=0.230;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,31:54:99:878,0,707
1	160061384	rs1131891	C	T	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=-0.312;SB=0.00;SOR=1.022;VQSLOD=10.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:241,0,164
1	160061414	rs12727520	G	A	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=1.389;SB=0.00;SOR=0.602;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:292,0,312
1	160061934	rs12408242	T	C	281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=10.942;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-1.305;SB=-1.200e+02;SOR=0.718;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:310,0,361
1	160061959	rs12401728	C	T	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=11.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-1.979;SB=-7.800e+01;SOR=1.148;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:276,0,365
1	160062340	rs41265757	G	A	624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=7.450;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.413;SB=-3.820e+02;SOR=0.615;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,27:55:99:653,0,835
1	160062472	rs2295622	C	T	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=6.603;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.699;SB=-3.650e+02;SOR=0.673;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,27:65:99:690,0,1038
1	160062727	rs2295621	A	G	1385.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.763;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.465;SB=-7.040e+02;SOR=0.562;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,50:102:99:1414,0,1299
1	160083544	rs11265328	G	A	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.09;ReadPosRankSum=0.132;SB=-2.402e+01;SOR=1.179;VQSLOD=8.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:163,0,343
1	160090674	rs2854246	T	C	1150.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=101.4834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-3.310e+02;SOR=2.179;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1179,87,0
1	160090681	rs67915591	CCCTT	C	2494.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.02;SB=-7.040e+02;SOR=2.012;VQSLOD=4.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:38:99:2532,111,0
1	160091136	rs17846705	T	C	394.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.045;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-1.252;SB=-6.500e+01;SOR=0.848;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:423,0,484
1	160093222	rs2820581	C	T	1659.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-9.700e+02;SOR=0.892;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1688,123,0
1	160093911	rs2820582	T	C	2496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-1.518e+03;SOR=0.876;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2525,181,0
1	160093927	rs2854248	T	A	1161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.944;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-1.713;SB=-6.410e+02;SOR=0.580;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,44:79:99:1190,0,894
1	160094343	rs1023420	T	C	567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.901;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-0.753;SB=-4.210e+02;SOR=0.156;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,27:45:99:596,0,470
1	160095127	rs7548116	T	A	694.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.438;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=5.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=1.654;SB=-2.160e+02;SOR=0.169;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,25:46:99:723,0,604
1	160097666	rs6695366	G	A	1265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.177;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-0.008;SB=-8.600e+02;SOR=0.721;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,52:93:99:1294,0,1181
1	160105367	rs17846715	C	T	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-1.418;SB=-2.650e+02;SOR=1.303;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:593,0,813
1	160109408	.	A	AC	566.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=1.313;POSITIVE_TRAIN_SITE;QD=12.06;RPA=2,3;RU=C;ReadPosRankSum=0.263;SB=-2.620e+02;SOR=0.839;STR;VQSLOD=2.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,18:47:99:604,0,1073
1	160109636	rs17846717	C	G	572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.524;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=4.966;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.30;ReadPosRankSum=-1.873;SB=-2.710e+02;SOR=1.358;VQSLOD=6.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,25:69:99:601,0,1286
1	160109656	rs17846718	G	C	522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.526;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=5.056;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.47;ReadPosRankSum=-1.355;SB=-2.300e+02;SOR=1.391;VQSLOD=6.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,24:70:99:551,0,1352
1	160109788	rs41288127	C	T	272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.471;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.756;HaplotypeScore=2.2772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=-1.766;SB=-8.900e+01;SOR=0.330;VQSLOD=6.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,11:32:99:301,0,666
1	160109835	rs55884181	G	A	266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-0.469;SB=-2.502e+01;SOR=0.846;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:295,0,447
1	160121899	rs77332724	A	G	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=1.725;SB=-1.280e+02;SOR=0.896;VQSLOD=6.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,10:25:99:247,0,337
1	160124875	rs6427504	G	A	336.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-1.145e+02;SOR=1.802;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:365,27,0
1	160128994	rs10908764	C	T	1078.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-2.261e+02;SOR=2.765;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1107,84,0
1	160133859	rs12124737	C	T	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.456;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.841;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=0.222;SB=-1.670e+02;SOR=1.532;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,24:33:99:684,0,250
1	160136350	rs7529215	G	A	2450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.04;SB=-4.600e+02;SOR=3.136;VQSLOD=6.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2479,187,0
1	160140998	rs1209804	G	A	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.173;SB=-6.700e+01;SOR=0.317;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:332,0,372
1	160141196	rs625549	C	T	2097.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-1.065e+03;SOR=1.146;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2126,157,0
1	160141636	rs1891265	C	T	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.326;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=6.827;HaplotypeScore=1.9142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=0.105;SB=-7.400e+01;SOR=1.938;VQSLOD=6.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,20:55:99:545,0,1039
1	160145688	rs1884996	C	G	363.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.735;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.805;SB=-1.460e+02;SOR=0.229;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:392,0,454
1	160145707	rs11805919	C	T	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.259;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.634;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.870;SB=-1.710e+02;SOR=0.242;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:398,0,523
1	160147502	rs731852	T	G	787.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=-0.831;SB=-3.380e+02;SOR=0.557;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:816,0,574
1	160147517	rs11801984	A	G	679.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-1.340;SB=-2.790e+02;SOR=0.693;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,25:44:99:708,0,556
1	160147521	rs11806793	C	T	650.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-1.246;SB=-2.660e+02;SOR=0.693;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,25:44:99:679,0,561
1	160151450	rs7519748	T	C	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.089;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.564;HaplotypeScore=4.3114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=1.275;SB=-1.410e+02;SOR=1.140;VQSLOD=6.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,18:55:99:457,0,1030
1	160152382	rs6427505	C	T	483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.015;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.577;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=1.357;SB=-2.860e+02;SOR=0.662;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:48:99:512,0,732
1	160156512	.	T	C	870.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=1.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.40;ReadPosRankSum=0.585;SB=-3.620e+02;SOR=1.328;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,34:65:99:899,0,829
1	160160846	.	C	T	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.055;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.06;ReadPosRankSum=-0.284;SB=-9.800e+01;SOR=1.358;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:557,0,306
1	160163446	rs3747621	C	T	1677.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=-1.503e+02;SOR=4.317;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1706,129,0
1	160163449	rs3747622	G	C	946.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.051;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=0.336;SB=-6.800e+01;SOR=1.179;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,28:47:99:975,0,587
1	160163509	rs3747623	C	T	1076.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=1.780;HaplotypeScore=3.5672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.767;SB=-4.110e+02;SOR=0.509;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,39:101:99:1105,0,1813
1	160163815	rs116123807	C	G	430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.93;ReadPosRankSum=-0.395;SB=0.00;SOR=1.863;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,13:18:99:459,0,113
1	160163816	rs34277881	T	G	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=-0.053;SB=0.00;SOR=1.739;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:390,0,151
1	160164668	rs1186693	T	C	706.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7369;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-1.921e+02;SOR=2.400;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:735,54,0
1	160165572	rs60043899	T	A	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.767;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=-0.879;SB=-4.276e+01;SOR=0.105;VQSLOD=7.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:14:99:157,0,269
1	160167196	.	C	T	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.724;HaplotypeScore=10.5767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-0.441;SB=-6.100e+01;SOR=1.162;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,17:40:99:474,0,655
1	160168368	rs822450	G	A	1284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.449;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=2.651;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-0.636;SB=-5.490e+02;SOR=0.447;VQSLOD=7.57;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,54:125:99:1313,0,2046
1	160169473	rs959166	T	C	783.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-3.876e+01;SOR=4.712;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:812,60,0
1	160178356	rs667306	A	G	1914.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-7.430e+02;SOR=1.727;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1943,141,0
1	160178376	rs3789040	C	G	939.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.997;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.095;SB=-4.620e+02;SOR=0.506;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,37:67:99:968,0,751
1	160251792	rs2795067	A	G	1066.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.544;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.852;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.778;SB=-5.240e+02;SOR=0.538;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,41:87:99:1095,0,1290
1	160261556	.	G	T	1086.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.174;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.903;HaplotypeScore=2.5771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.25;ReadPosRankSum=1.112;SB=-3.830e+02;SOR=0.507;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,38:82:99:1115,0,1192
1	160262824	rs3834718	TAA	T	921.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQ0=0;MQRankSum=0.745;POSITIVE_TRAIN_SITE;QD=31.78;RPA=3,1;RU=A;ReadPosRankSum=-0.094;SB=-2.490e+02;SOR=0.693;STR;VQSLOD=3.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,20:29:99:959,0,388
1	160263124	rs1317944	C	T	1611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.581;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.898;SB=-9.110e+02;SOR=0.509;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,61:106:99:1640,0,1215
1	160267555	rs10159339	G	A	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=-0.228;SB=-3.100e+01;SOR=0.818;VQSLOD=9.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:160,0,286
1	160275434	rs2066320	A	G	1278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.8036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=-0.853;SB=-4.930e+02;SOR=0.642;VQSLOD=7.56;culprit=DP	GT:AD:DP:GQ:PL	0/1:89,57:148:99:1307,0,2555
1	160302444	rs4656897	G	A	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;VQSLOD=10.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:232,0,167
1	160303416	rs1802778	G	A	1195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.464;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=7.571;HaplotypeScore=4.3149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=-0.596;SB=-6.140e+02;SOR=1.075;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,50:104:99:1224,0,1553
1	160309664	rs1886419	T	G	754.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.698;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.011;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.602;SB=-2.470e+02;SOR=0.909;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,28:63:99:783,0,858
1	160313330	rs3737794	C	G	416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.336;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.52;ReadPosRankSum=-0.057;SB=-1.420e+02;SOR=1.609;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,13:17:99:445,0,114
1	160313744	.	G	GTTTT	574.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;RPA=22,26;RU=T;ReadPosRankSum=1.023;SB=-1.020e+01;SOR=0.223;STR;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,20:57:99:612,0,488
1	160319074	rs41266883	A	T	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.847;SB=-9.300e+01;SOR=0.527;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:226,0,267
1	160321656	rs1041066	G	A	532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-0.336;SB=-2.750e+02;SOR=0.191;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:561,0,607
1	160325921	rs45503695	T	C	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=0.843;SB=-1.245e+02;SOR=0.160;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:332,0,159
1	160327820	rs17370539	G	C	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.706;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.462;SB=-1.460e+02;SOR=0.148;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:290,0,318
1	160327865	rs41266887	C	T	545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.743;SB=-1.950e+02;SOR=0.693;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:574,0,592
1	160385612	rs189802721	G	A	547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-0.504;SB=-2.350e+02;SOR=0.754;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,22:56:99:576,0,855
1	160393905	rs12086448	A	G	1048.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.992;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.997;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.663;SB=-2.590e+02;SOR=0.955;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,35:78:99:1077,0,1295
1	160394155	rs68148622	CT	C	596.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;DB;DP=42;ExcessHet=3.0103;FS=4.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-1.999;SB=-3.150e+02;SOR=0.198;VQSLOD=7.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:25,17:42:99:634,0,1098
1	160458782	rs3795327	A	G	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.692;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=12.789;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-2.056;SB=-3.800e+01;SOR=2.694;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,19:51:99:503,0,975
1	160580015	rs1061217	A	G	262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.156;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.657;SB=-9.100e+01;SOR=1.038;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:291,0,357
1	160580807	rs349251	T	C	335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.98;ReadPosRankSum=2.619;SB=0.00;SOR=1.765;VQSLOD=8.49;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,10:14:99:364,0,111
1	160582248	rs11265449	C	G	722.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-3.660e+02;SOR=1.179;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:751,54,0
1	160585554	rs149160	C	G	1085.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-4.460e+02;SOR=1.402;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1114,81,0
1	160585706	rs151607	C	T	601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-4.276e+01;SOR=4.294;VQSLOD=6.57;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:48:630,48,0
1	160604863	rs3766362	A	T	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=0.00;SOR=6.358;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:867,66,0
1	160650913	rs4656926	A	G	1816.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=0.555;SB=-2.800e+02;SOR=2.107;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1845,101,0
1	160681737	.	A	T	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.071;SB=-1.050e+02;SOR=0.631;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:347,0,238
1	160681775	rs352684	A	G	462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-8.297e+01;SOR=2.985;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:491,36,0
1	160717693	.	G	GT	123.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;RPA=5,6;RU=T;ReadPosRankSum=1.116;SB=0.00;SOR=0.569;STR;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:161,0,177
1	160717741	rs17313062	A	G	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.967;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=8.302;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-0.154;SB=-1.490e+02;SOR=0.064;VQSLOD=6.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,12:26:99:280,0,432
1	160717872	rs527733	T	G	2028.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.39;SB=-9.950e+02;SOR=1.034;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2057,150,0
1	160722064	rs527342	A	G	579.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-7.497e+01;SOR=3.383;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:608,45,0
1	160786670	rs560681	A	G	577.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.849;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.599;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.811;SB=-6.100e+01;SOR=1.453;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,20:45:99:606,0,781
1	160787725	rs579589	T	C	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.413;SB=0.00;SOR=0.569;VQSLOD=10.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:196,0,225
1	160788217	rs575217	T	A	53.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.89;ReadPosRankSum=0.199;SB=0.00;SOR=0.180;VQSLOD=8.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:82:82,0,279
1	160789196	rs537540	A	C	1832.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-9.280e+02;SOR=1.329;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1861,132,0
1	160789308	rs522897	C	T	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=4.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=0.386;SB=-1.765e+00;SOR=2.833;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:315,0,117
1	160793442	rs474131	A	G	2512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=10.442;DB;DP=175;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=2.352;SB=-1.166e+03;SOR=0.541;VQSLOD=6.30;culprit=DP	GT:AD:DP:GQ:PL	0/1:92,83:175:99:2541,0,2417
1	160793560	rs509749	A	G	1930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.972;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=1.249;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.867;SB=-9.130e+02;SOR=0.539;VQSLOD=6.60;culprit=DP	GT:AD:DP:GQ:PL	0/1:94,79:173:99:1959,0,2488
1	160793962	rs506081	G	C	1320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-0.945;SB=-4.990e+02;SOR=0.651;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:69,49:118:99:1349,0,1883
1	160797323	rs577453	T	G	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-0.879;SB=-3.101e+01;SOR=0.473;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:189,0,273
1	160797514	rs576334	C	G	863.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.654;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.851;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.677;SB=-4.920e+02;SOR=0.899;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,35:81:99:892,0,1195
1	160797684	rs574610	A	G	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-0.388;SB=-1.767e+00;SOR=1.781;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:319,0,264
1	160801046	rs480104	C	G	392.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.639;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-1.160;SB=-2.510e+02;SOR=0.142;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:35:99:421,0,544
1	160803802	rs11265493	A	G	372.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-0.079;SB=-2.050e+02;SOR=1.082;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:401,0,384
1	160809003	rs6682654	G	A	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.820;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=-0.317;SB=0.00;SOR=0.784;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:388,0,298
1	160811830	rs2990703	A	G	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=1.200;SB=0.00;SOR=1.270;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:251,0,127
1	160832212	rs11265500	A	G	190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.621;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.016;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.95;ReadPosRankSum=-0.763;SB=-2.302e+01;SOR=1.284;VQSLOD=7.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,7:24:99:219,0,550
1	160848993	rs3766357	G	A	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.792;SB=0.00;SOR=0.551;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:130,0,192
1	160849030	.	T	A	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-0.490;SB=-6.400e+01;SOR=0.180;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:240,0,288
1	160849060	rs3766359	G	A	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-0.103;SB=-1.730e+02;SOR=0.446;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:322,0,340
1	160849082	rs3820094	A	G	327.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.674;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=1.880;SB=-1.640e+02;SOR=0.551;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,13:33:99:356,0,505
1	160850280	rs4656957	G	A	610.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.167;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.281;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=-0.156;SB=-2.920e+02;SOR=0.411;VQSLOD=7.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,25:67:99:639,0,1184
1	160850936	rs2236515	T	C	1395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-2.088;SB=-8.360e+02;SOR=0.745;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,61:125:99:1424,0,1773
1	160851564	rs6427551	C	G	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.702;SB=-3.876e+01;SOR=0.120;VQSLOD=7.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:99:138,0,212
1	160851619	rs10908808	A	G	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.0435;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=0.738;POSITIVE_TRAIN_SITE;QD=5.61;ReadPosRankSum=0.779;SB=-6.600e+01;SOR=0.233;VQSLOD=2.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,6:23:99:146,0,395
1	160851826	rs2274907	A	T	1455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.827;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-0.561;SB=-5.970e+02;SOR=0.809;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,50:94:99:1484,0,1272
1	160851894	rs2274908	G	A	1524.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.752;HaplotypeScore=3.8599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=1.191;SB=-6.350e+02;SOR=0.822;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,54:106:99:1553,0,1349
1	160852022	rs2274909	C	T	2341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.617;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=-0.046;SB=-1.462e+03;SOR=0.607;VQSLOD=7.13;culprit=DP	GT:AD:DP:GQ:PL	0/1:61,85:146:99:2370,0,1714
1	160852046	rs2274910	T	C	2151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=10.424;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=1.368;HaplotypeScore=1.8606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=0.291;SB=-1.270e+03;SOR=0.558;VQSLOD=7.77;culprit=DP	GT:AD:DP:GQ:PL	0/1:59,82:141:99:2180,0,1575
1	160852167	rs6427552	C	T	702.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.026;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-0.499;SB=0.00;SOR=0.739;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,22:43:99:731,0,736
1	160854526	rs2297559	G	A	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=1.241;SB=0.00;SOR=0.693;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:272,0,273
1	160917902	rs1556519	T	C	487.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.135;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=0.127;SB=-8.197e+01;SOR=0.368;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,17:24:99:516,0,174
1	160920809	rs3829790	A	G	816.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-1.022;SB=-3.590e+02;SOR=0.739;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,32:54:99:845,0,511
1	160920813	rs790059	A	G	1771.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-7.140e+02;SOR=1.609;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1800,129,0
1	160920966	rs6680969	C	T	1383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.714;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-1.270;SB=-5.120e+02;SOR=0.613;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,48:91:99:1412,0,1309
1	160921230	rs4656971	T	G	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.303;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=1.495;SB=-2.901e+01;SOR=0.631;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,15:40:99:463,0,785
1	160969008	.	T	TG	1384.73	PASS	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.85;RPA=4,5;RU=G;SB=-6.160e+02;SOR=0.984;STR;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:42:99:1422,111,0
1	160969585	rs790056	C	T	2221.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.366;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.16;ReadPosRankSum=1.423;SB=-6.770e+02;SOR=0.979;VQSLOD=4.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,66:67:99:2250,139,0
1	160971146	rs790055	A	G	1612.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.915;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.62;ReadPosRankSum=1.190;SB=-7.390e+02;SOR=0.562;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,50:51:85:1641,85,0
1	160990875	rs28365980	T	C	2246.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-9.950e+02;SOR=1.516;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2275,163,0
1	160990876	rs28365979	C	A	2157.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-9.190e+02;SOR=1.577;VQSLOD=5.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2186,163,0
1	160990878	rs28365978	C	T	2189.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-9.720e+02;SOR=1.609;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2218,163,0
1	161008572	rs3766383	C	A	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.610;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=-0.920;SB=-6.900e+01;SOR=1.981;VQSLOD=6.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,12:34:99:345,0,677
1	161008803	rs3766382	G	T	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=0.044;SB=-1.410e+02;SOR=1.230;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:457,0,334
1	161010774	rs2516841	A	G	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=0.337;SB=0.00;SOR=0.818;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:269,0,235
1	161011051	.	CA	C	59.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.085;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.01;MQ0=0;MQRankSum=0.756;QD=2.30;RPA=24,23;RU=A;ReadPosRankSum=2.188;SB=-1.133e+01;SOR=1.112;STR;VQSLOD=1.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,10:28:97:97,0,285
1	161011317	rs2516840	A	G	37.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.70;ReadPosRankSum=1.326;SB=-2.801e+01;SOR=0.184;VQSLOD=5.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:66:66,0,404
1	161011716	rs2774276	G	C	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.743;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-0.165;SB=-1.670e+02;SOR=0.676;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,20:44:99:563,0,636
1	161012760	rs2073653	T	C	503.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.915;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.500;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.190;SB=-1.320e+02;SOR=1.688;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:532,0,475
1	161013312	rs6686076	T	C	232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.118;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=7.877;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-1.916;SB=-8.197e+01;SOR=0.035;VQSLOD=6.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,10:25:99:261,0,473
1	161017445	rs75570999	A	C	756.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-1.331;SB=-2.170e+02;SOR=0.569;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:55:99:785,0,793
1	161022380	rs4396136	G	A	3144.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-1.587e+03;SOR=1.122;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3173,232,0
1	161042874	rs149361218	AGCAGAGATGCGGT	A	1544.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.28;ReadPosRankSum=0.490;SB=-1.570e+02;SOR=1.329;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:1582,0,939
1	161043735	rs4656285	A	C	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.589;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.72;ReadPosRankSum=-0.675;SB=-3.200e+01;SOR=0.527;VQSLOD=8.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:114,0,366
1	161043764	rs4656978	G	A	56.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.774;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.37;ReadPosRankSum=-0.169;SB=-5.150e-01;SOR=1.609;VQSLOD=6.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:85:85,0,295
1	161047125	rs60601836	CTATA	C	1276.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.52;RPA=4,2;RU=TA;SB=0.00;SOR=5.994;STR;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:20:57:1314,57,0
1	161049358	rs3820097	G	A	614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-3.150e+02;SOR=0.914;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:643,48,0
1	161068949	rs114751920	C	A	1383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.399;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.499;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.496;SB=-8.860e+02;SOR=0.584;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,55:114:99:1412,0,1733
1	161088583	rs41270017	T	G	1385.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.142;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=8.526;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.744;SB=-4.960e+02;SOR=1.575;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,51:97:99:1414,0,1244
1	161089450	rs71692995	C	CTAAACT	2010.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=57;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=1.151;SB=-9.340e+02;SOR=0.544;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,25:57:99:2048,0,2611
1	161092761	rs17389237	A	G	804.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=0.994;SB=-4.310e+02;SOR=1.179;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,33:77:99:833,0,1155
1	161093425	rs35678373	CA	C	120.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.63;RPA=18,17;RU=A;ReadPosRankSum=1.403;SB=0.00;SOR=2.303;STR;VQSLOD=5.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,11:15:22:158,0,22
1	161094190	rs1135783	A	G	966.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=0.296;SB=-5.000e+02;SOR=0.664;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,38:98:99:995,0,1594
1	161126975	rs12031437	C	G	1122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.821;HaplotypeScore=2.5113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.228;SB=-6.550e+02;SOR=0.495;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,43:82:99:1151,0,951
1	161136843	rs2301287	C	G	600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=7.695;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=0.750;SB=-3.960e+02;SOR=0.199;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,25:56:99:629,0,918
1	161143969	rs11265561	A	G	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=1.329;SB=0.00;SOR=1.445;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:271,0,127
1	161145005	rs3813620	C	T	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.235;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-0.433;SB=-1.200e+02;SOR=0.541;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,15:36:99:374,0,513
1	161161284	rs41270041	G	C	990.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.292;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=-0.110;SB=-5.400e+02;SOR=1.121;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,37:59:99:1019,0,531
1	161162173	rs7512012	G	A	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.363;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-0.902;SB=-9.300e+01;SOR=1.061;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,13:32:99:378,0,557
1	161163037	rs4233367	T	C	238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.304;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.076;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=0.493;SB=-9.901e+01;SOR=0.124;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:267,0,362
1	161163633	.	C	T	494.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.272;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-0.372;SB=-2.930e+02;SOR=0.589;VQSLOD=6.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,21:60:99:523,0,1064
1	161167698	rs4589131	T	G	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.124;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.762;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=0.890;SB=-8.297e+01;SOR=0.242;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:355,0,178
1	161168189	rs34448954	C	T	811.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.026;HaplotypeScore=5.7327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.497;SB=-4.170e+02;SOR=0.906;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,29:55:99:840,0,636
1	161176137	rs4656993	A	G	1815.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.259;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=3.951;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.891;SB=-3.930e+02;SOR=1.199;VQSLOD=8.00;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,61:126:99:1844,0,1654
1	161182208	rs11576415	C	G	1598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.614;HaplotypeScore=2.3437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=2.056;SB=-1.103e+03;SOR=0.604;VQSLOD=6.12;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,69:146:99:1627,0,1942
1	161187665	rs2070902	C	T	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.107;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=1.314;SB=-1.205e+02;SOR=0.076;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:347,0,221
1	161188893	rs3557	T	G	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.104;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.05;ReadPosRankSum=1.010;SB=-9.732e-01;SOR=0.693;VQSLOD=9.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,3:16:77:77,0,432
1	161192316	rs6413453	G	A	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.384;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.212;SB=-9.400e+01;SOR=0.765;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,12:30:99:370,0,481
1	161192845	.	CCACACACACA	C	1784.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;RPA=19,14;RU=CA;ReadPosRankSum=1.132;SB=-4.520e+02;SOR=0.681;STR;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,17:65:99:1822,0,2024
1	161196166	rs3813628	A	C	624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.845;HaplotypeScore=14.3846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-1.917;SB=-3.410e+02;SOR=0.094;VQSLOD=7.54;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,26:38:99:653,0,345
1	161200487	rs4073054	C	A	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.469;SB=0.00;SOR=0.446;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:162,0,242
1	161202605	rs2307424	G	A	1495.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.708;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=6.605;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=1.302;SB=-9.040e+02;SOR=0.247;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,52:76:99:1524,0,560
1	161205898	rs6686001	G	T	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=0.503;SB=-9.200e+01;SOR=0.941;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,22:40:99:694,0,541
1	161228800	rs4078110	C	T	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=0.303;SB=-3.400e+01;SOR=0.368;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:133,0,166
1	161253657	rs4255401	C	T	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.774;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.761;SB=-9.732e-01;SOR=1.802;VQSLOD=7.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,8:21:99:233,0,386
1	161253684	rs66526557	AT	A	81.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.81;RPA=5,4;RU=T;ReadPosRankSum=0.000;SB=0.00;SOR=0.446;STR;VQSLOD=9.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:99:119,0,198
1	161276434	rs6674383	A	G	2147.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-8.480e+02;SOR=1.342;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2176,160,0
1	161309139	rs199769511	AT	A	61.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.86;RPA=16,15;RU=T;ReadPosRankSum=0.868;SB=0.00;SOR=0.340;STR;VQSLOD=7.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:99,0,211
1	161495477	rs72633678	A	T	5059.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=2;POSITIVE_TRAIN_SITE;QD=31.04;SB=-2.195e+03;SOR=1.495;VQSLOD=4.92;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5088,376,0
1	161495885	rs404508	T	C	4620.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-2.556e+03;SOR=0.753;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4649,340,0
1	161496530	rs1042881	C	G	814.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.636;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=-2.369;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-2.207;SB=-5.700e+01;SOR=0.976;VQSLOD=1.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,28:66:99:843,0,1095
1	161519411	rs10917571	C	A	389.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=0.00;SOR=4.977;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:418,33,0
1	161559327	rs3933769	A	G	729.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-1.613e+02;SOR=2.833;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:60:758,60,0
1	161561151	rs74341264	G	A	1345.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=20;POSITIVE_TRAIN_SITE;QD=20.39;SB=-6.240e+02;SOR=1.329;VQSLOD=3.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:11,55:66:99:1374,105,0
1	161565408	rs114010589	T	C	940.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.52;SB=-6.000e+02;SOR=0.902;VQSLOD=3.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:69:969,69,0
1	161565479	rs111504845	G	A	922.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-1.891e+02;SOR=2.985;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:69:951,69,0
1	161577657	rs61802306	G	A	1155.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=2;POSITIVE_TRAIN_SITE;QD=33.99;SB=-4.390e+02;SOR=1.473;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1184,87,0
1	161577669	rs61802307	G	A	1114.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=2;POSITIVE_TRAIN_SITE;QD=30.97;SB=-3.830e+02;SOR=1.418;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1143,87,0
1	161594246	rs61803009	G	T	339.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.31;SB=-8.097e+01;SOR=2.670;VQSLOD=6.77;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:27:368,27,0
1	161596283	rs418215	G	A	1904.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=2;POSITIVE_TRAIN_SITE;QD=30.23;SB=-5.697e+01;SOR=4.514;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1933,159,0
1	161600287	rs143868437	AT	A	271.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=30.19;RPA=4,3;RU=T;SB=-7.197e+01;SOR=2.093;STR;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:11:27:309,27,0
1	161601097	rs67020125	C	A	436.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-3.677e+01;SOR=3.611;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:465,36,0
1	161654843	rs1256288	C	G	483.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.88;SB=-3.600e+02;SOR=0.693;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:36:512,36,0
1	161676904	rs1340977	T	C	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.888;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.165;SB=-1.765e+00;SOR=1.473;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:335,0,361
1	161676970	rs1340978	A	G	672.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.977;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.363;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-1.403;SB=-1.350e+02;SOR=1.022;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,23:49:99:701,0,698
1	161680258	rs6427618	G	A	744.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=1.067;SB=-4.020e+02;SOR=0.629;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,25:47:99:773,0,597
1	161683136	rs11746	G	A	1816.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.941;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=1.317;HaplotypeScore=2.7651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.412;SB=-1.132e+03;SOR=0.549;VQSLOD=7.53;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,70:144:99:1845,0,1883
1	161695639	rs7520519	G	T	723.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.508;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.653;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-0.769;SB=-3.550e+02;SOR=0.330;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,25:65:99:752,0,1188
1	161696088	rs1417582	T	C	975.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.576;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.261;HaplotypeScore=2.7260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=-1.627;SB=-4.960e+02;SOR=0.394;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,35:61:99:1004,0,717
1	161696998	rs1875763	C	G	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=-1.427;SB=-3.100e+01;SOR=1.609;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:88:248,0,88
1	161722272	rs10917852	C	A	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.413;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-0.449;SB=-2.450e+02;SOR=1.096;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:684,0,702
1	161722779	.	C	CAAA	385.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;RPA=10,13;RU=A;ReadPosRankSum=0.626;SB=0.00;SOR=0.622;STR;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:26:99:423,0,499
1	161736035	rs2298019	A	G	1182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.860;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=6.965;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=-1.025;SB=-6.990e+02;SOR=0.221;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,39:66:99:1211,0,694
1	161822959	rs2340717	C	T	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.608;SB=-1.765e+00;SOR=2.584;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:212,0,100
1	161823011	rs2257107	T	A	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-1.623;SB=-9.300e+01;SOR=0.914;VQSLOD=8.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:352,0,280
1	161823197	.	G	GT	835.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=47;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.57;RPA=2,3;RU=T;ReadPosRankSum=-2.017;SB=-3.840e+02;SOR=0.781;STR;VQSLOD=7.43;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,27:47:99:873,0,617
1	161833233	rs3767632	G	A	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=1.171;SB=0.00;SOR=1.061;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:352,0,190
1	161953400	rs12039519	G	A	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.247;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.258;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=-1.274;SB=-1.150e+02;SOR=0.976;VQSLOD=7.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,21:57:99:557,0,966
1	161954448	rs12726227	C	T	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.944;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=1.001;SB=-3.677e+01;SOR=0.195;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:446,0,438
1	161967681	rs2499836	A	G	1102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-0.284;SB=-5.390e+02;SOR=0.785;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,41:99:99:1131,0,1467
1	161976234	rs12022536	A	G	1604.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-8.670e+02;SOR=0.776;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1633,126,0
1	161976272	.	G	GA	1282.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.165;DP=51;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.65;RPA=10,11;RU=A;ReadPosRankSum=-1.575;SB=-5.950e+02;SOR=0.595;STR;VQSLOD=5.88;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:1,49:51:99:1315,123,0
1	162257033	rs10800405	C	G	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.284;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=0.000;SB=-1.350e+02;SOR=0.653;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:271,0,330
1	162313518	rs3751285	A	G	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.135;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.010;SB=-2.080e+02;SOR=0.446;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:718,0,682
1	162313597	rs347278	T	C	3016.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-1.315e+03;SOR=1.516;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3045,220,0
1	162313735	rs3751284	C	T	1333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.507;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.791;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=-0.723;SB=-6.390e+02;SOR=0.491;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,51:93:99:1362,0,1044
1	162335052	rs905721	C	T	1094.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;SB=-1.841e+02;SOR=3.126;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1123,81,0
1	162335424	rs1964052	T	C	778.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.80;SB=-4.176e+01;SOR=4.712;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:807,60,0
1	162343774	rs7512126	A	G	2553.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-1.108e+03;SOR=1.664;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2582,199,0
1	162344102	rs2282397	C	T	5769.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-3.351e+03;SOR=0.784;VQSLOD=4.53;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,182:182:99:5798,430,0
1	162344390	rs164159	A	G	2231.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=-4.420e+02;SOR=3.021;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2260,166,0
1	162345091	rs164181	G	A	2381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-5.790e+02;SOR=2.400;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2410,181,0
1	162345472	rs164183	C	T	635.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.46;SB=-1.543e+02;SOR=2.419;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:664,51,0
1	162346433	rs150155141	CA	C	2123.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.94;RPA=8,7;RU=A;SB=-9.050e+02;SOR=1.121;STR;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:78:99:2161,228,0
1	162348662	rs164188	C	T	501.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-1.135e+02;SOR=2.584;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:530,39,0
1	162352111	rs164189	G	A	499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-1.603e+02;SOR=1.765;VQSLOD=7.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:39:528,39,0
1	162367071	rs17852003	C	T	782.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-4.540e+02;SOR=0.770;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:811,60,0
1	162415426	rs66587648	C	T	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.835;SB=-3.000e+01;SOR=1.688;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:199,0,211
1	162467014	rs10919549	C	G	3324.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-8.090e+02;SOR=2.742;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3353,244,0
1	162473401	rs33964112	CAA	C	196.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.769;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;RPA=20,18;RU=A;ReadPosRankSum=1.443;SB=0.00;SOR=2.147;STR;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:3,10:14:13:234,13,0
1	162562775	rs1510267	A	G	387.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.69;SB=0.00;SOR=4.977;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:416,33,0
1	162722846	rs1632311	C	G	2278.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.28;SB=-4.310e+02;SOR=3.056;VQSLOD=0.065;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2307,169,0
1	162725655	rs1115570	A	C	760.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=0.00;SOR=6.273;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:789,66,0
1	162731404	rs2684867	C	T	530.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-3.577e+01;SOR=4.174;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:559,42,0
1	162736851	rs35772230	G	GAAAA	605.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;RPA=4,8;RU=A;SB=0.00;SOR=5.136;STR;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:643,36,0
1	162736856	rs1533083	C	A	469.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.55;SB=0.00;SOR=5.421;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:498,39,0
1	162740327	rs1780003	T	C	2911.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-1.352e+03;SOR=1.321;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2940,226,0
1	162742180	rs1704762	T	C	861.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.47;SB=-1.245e+02;SOR=3.528;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:890,66,0
1	162743418	rs1355287	G	T	1079.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-3.500e+02;SOR=1.949;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1108,81,0
1	162748588	rs907074	C	A	881.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-1.473e+02;SOR=3.180;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:910,69,0
1	162760551	rs1704754	C	T	2542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=10;POSITIVE_TRAIN_SITE;QD=27.05;SB=-7.780e+02;SOR=2.140;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,92:94:99:2571,196,0
1	162760554	rs71519246	T	C	2722.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=10;POSITIVE_TRAIN_SITE;QD=28.07;SB=-8.030e+02;SOR=2.022;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2751,199,0
1	162765475	rs2684884	G	C	862.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-3.490e+02;SOR=1.382;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:891,66,0
1	162766476	rs1780019	C	T	3017.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.712e+03;SOR=0.985;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3046,223,0
1	162822771	rs2684878	A	C	778.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-1.245e+02;SOR=3.352;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:60:807,60,0
1	162829537	.	C	G	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.339;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.977;SB=0.00;SOR=0.340;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:196,0,364
1	163038613	rs7515900	C	A	355.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.554;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-0.735;SB=-1.765e+00;SOR=0.963;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,13:35:99:384,0,766
1	163038684	rs12402634	C	A	923.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.319;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.066;SB=-3.160e+02;SOR=0.678;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,37:81:99:952,0,1145
1	163038853	rs10917671	G	A	775.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.002;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.630;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-0.071;SB=-1.520e+02;SOR=1.214;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,28:62:99:804,0,814
1	163043088	rs10799897	A	G	831.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-4.176e+01;SOR=4.804;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:860,63,0
1	163122528	rs1354939	G	C	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.175;SB=-1.765e+00;SOR=1.609;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:164,0,180
1	163187232	rs56177331	T	C	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.42;ReadPosRankSum=-1.191;SB=-3.500e+01;SOR=0.188;VQSLOD=8.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:115,0,364
1	163187263	rs2814368	G	A	965.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-2.740e+02;SOR=2.448;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:75:994,75,0
1	163297896	rs41272017	G	A	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.581;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-1.840;SB=0.00;SOR=0.693;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:360,0,382
1	163298768	.	T	TA	294.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.55;RPA=15,16;RU=A;ReadPosRankSum=0.810;SB=-6.901e+01;SOR=0.199;STR;VQSLOD=6.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,21:60:99:332,0,324
1	163307944	rs2175015	T	C	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.666;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.3346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-0.064;SB=-1.470e+02;SOR=0.892;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:31:99:468,0,285
1	163309219	rs1509022	A	T	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.126;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.113;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=-1.248;SB=-2.990e+02;SOR=0.473;VQSLOD=6.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,20:50:99:387,0,741
1	163309302	rs2999852	C	T	676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-1.145e+02;SOR=3.160;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:705,54,0
1	163315350	rs10753611	G	C	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.323;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.85;ReadPosRankSum=-0.612;SB=-3.876e+01;SOR=0.527;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:326,0,109
1	163318934	rs17358956	A	C	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.854;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=-0.258;SB=-1.470e+02;SOR=0.722;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,15:23:99:407,0,230
1	164529120	rs2275558	G	A	1075.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4580;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=-9.827e+01;SOR=3.407;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:33:87:1104,87,0
1	164529284	rs141669515	GTTTT	G	2010.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQ0=0;MQRankSum=1.549;QD=21.24;RPA=6,2;RU=T;ReadPosRankSum=1.003;SB=-8.040e+02;SOR=0.802;STR;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,33:72:99:2048,0,2324
1	164532325	rs4657364	T	C	620.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.524;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=0.088;SB=-6.100e+01;SOR=1.089;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:649,0,617
1	164559536	rs1780335	A	G	241.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-0.969;SB=-1.766e+00;SOR=1.214;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:270,0,421
1	164789444	rs1538488	A	G	768.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;SB=-1.483e+02;SOR=2.833;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:797,57,0
1	165173216	rs1354509	A	G	3136.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-1.259e+03;SOR=1.683;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3165,229,0
1	165180089	rs1532815	T	A	658.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.035;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-1.119;SB=-2.820e+02;SOR=0.929;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,28:60:99:687,0,815
1	165218792	rs10753668	G	A	876.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=8.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.444;SB=-3.510e+02;SOR=1.337;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,31:70:99:905,0,1010
1	165375835	rs283698	A	G	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.164;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.339;HaplotypeScore=1.7172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-0.584;SB=-1.709e+01;SOR=1.999;VQSLOD=6.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,12:37:99:363,0,680
1	165375895	rs283697	A	C	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.982;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-1.283;SB=-1.900e+02;SOR=1.392;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,25:60:99:705,0,893
1	165376043	rs283696	T	C	1558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.285;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=5.277;HaplotypeScore=1.9025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.412;SB=-8.510e+02;SOR=0.738;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,58:95:99:1587,0,904
1	165376228	rs3737003	T	C	448.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.714;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.03;ReadPosRankSum=-1.530;SB=-7.100e+01;SOR=0.663;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:477,0,323
1	165376229	rs10800095	C	G	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.846;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.06;ReadPosRankSum=-1.577;SB=-6.500e+01;SOR=0.663;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:534,0,341
1	165376233	rs10800096	G	C	520.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=-1.435;SB=-7.300e+01;SOR=0.663;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:549,0,335
1	165377389	rs283692	T	C	929.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-8.397e+01;SOR=4.174;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:958,72,0
1	165377552	rs2134095	G	A	1264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.808;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=3.550;HaplotypeScore=3.1615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-0.900;SB=-6.800e+02;SOR=1.028;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,50:109:99:1293,0,1525
1	165378729	rs55949511	TAC	T	565.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;RPA=14,13;RU=AC;SB=-1.025e+02;SOR=2.712;STR;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:18:51:603,51,0
1	165378992	rs10918172	C	T	362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.151;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-0.728;SB=-6.100e+01;SOR=1.911;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:391,0,372
1	165389285	rs157870	C	G	1113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.756;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=3.163;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-2.302;SB=-4.020e+02;SOR=1.236;VQSLOD=7.27;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1142,0,1149
1	165533005	rs453717	C	A	1104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.594;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=5.810;HaplotypeScore=3.4184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-1.357;SB=-2.930e+02;SOR=1.332;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,37:88:99:1133,0,1399
1	165533188	rs367199	A	C	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.399;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.93;ReadPosRankSum=-0.211;SB=-2.601e+01;SOR=1.075;VQSLOD=9.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:129,0,329
1	165601215	rs4147595	G	C	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.474;SB=0.00;SOR=0.693;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:211,0,204
1	165601365	rs4147596	T	C	558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.223;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.317;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-1.408;SB=-3.930e+02;SOR=0.399;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,22:37:99:587,0,457
1	165601466	rs9333378	G	A	851.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.099;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=-0.991;SB=-3.820e+02;SOR=1.022;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,33:53:99:880,0,446
1	165619424	rs9333468	G	T	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=0.450;SB=-9.732e-01;SOR=1.802;VQSLOD=6.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:99:164,0,253
1	165623386	rs4147604	C	G	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-0.682;SB=0.00;SOR=0.693;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:243,0,169
1	165623411	rs4147605	C	G	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.625;SB=0.00;SOR=0.473;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:205,0,283
1	165623451	rs4147606	C	T	335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.172;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=8.287;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.616;SB=-1.410e+02;SOR=0.065;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:364,0,554
1	165623693	rs4147607	G	C	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-0.757;SB=-4.176e+01;SOR=0.188;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:304,0,355
1	165630475	rs7544840	C	T	449.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.105;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-0.602;SB=-2.601e+01;SOR=0.693;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:478,0,480
1	165630495	rs7511691	T	C	463.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.502;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.536;SB=-1.250e+02;SOR=0.752;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:492,0,599
1	165630698	rs6667681	A	G	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=0.805;SB=-8.000e+01;SOR=0.776;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,15:25:99:474,0,256
1	165636749	rs2176151	A	G	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.549;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.36;ReadPosRankSum=-0.511;SB=0.00;SOR=1.609;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:386,0,157
1	165648480	rs6662419	A	G	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.150;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.547;SB=0.00;SOR=1.022;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:238,0,155
1	165648559	rs4646897	T	G	471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=-1.291;SB=-9.900e+01;SOR=0.502;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:500,0,389
1	165648886	rs4646896	G	A	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.753;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.139;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-0.828;SB=-7.000e+01;SOR=0.324;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:388,0,464
1	165648894	rs4646895	C	G	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.861;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-0.163;SB=-7.301e+01;SOR=0.276;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:347,0,417
1	165649715	rs16849374	T	C	755.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.017;SB=-2.810e+02;SOR=0.593;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,26:54:99:784,0,797
1	165649851	rs1065756	C	G	1397.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.826;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.108;SB=-7.910e+02;SOR=0.536;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,52:89:99:1426,0,1039
1	165651153	rs2882006	T	A	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=-0.657;SB=-4.176e+01;SOR=0.048;VQSLOD=6.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:86:86,0,276
1	165651502	rs1913844	G	C	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=1.206;SB=-7.300e+01;SOR=0.321;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:342,0,414
1	165652273	rs1143659	A	G	1655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.638;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-1.279;SB=-8.840e+02;SOR=0.773;VQSLOD=7.49;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,63:137:99:1684,0,1921
1	165652445	rs4233407	A	G	859.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.243;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=6.793;HaplotypeScore=2.7351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=-0.766;SB=-1.352e-01;SOR=2.175;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,27:60:99:888,0,1006
1	165721223	rs7512095	T	C	707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=0.00;SOR=5.892;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:736,54,0
1	165737704	rs2790053	C	G	1846.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6232;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-8.620e+02;SOR=0.933;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1875,144,0
1	165859630	rs477033	C	G	4842.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-2.057e+03;SOR=1.609;VQSLOD=5.35;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4871,358,0
1	165865300	rs4656465	G	A	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.449;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=-0.760;SB=-4.076e+01;SOR=0.260;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:363,0,343
1	165865694	rs2241965	G	A	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.810;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.24;ReadPosRankSum=-0.350;SB=0.00;SOR=0.132;VQSLOD=9.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:133,0,549
1	166029970	rs4353067	T	C	2812.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-1.346e+03;SOR=1.101;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2841,208,0
1	166030079	rs36122465	A	AAG	1422.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.76;RPA=1,2;RU=AG;SB=-4.976e+01;SOR=5.353;STR;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1460,87,0
1	166124134	rs896402	A	G	1615.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4602;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-7.010e+02;SOR=1.609;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1644,117,0
1	166245170	rs3813991	G	C	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.21;ReadPosRankSum=0.895;SB=-5.600e+01;SOR=0.527;VQSLOD=8.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:122,0,260
1	166246419	rs2488896	A	G	367.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-1.115e+02;SOR=1.802;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:396,30,0
1	167038406	rs370179559	C	A	961.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.208;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=2.215;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.36;ReadPosRankSum=1.239;SB=-3.250e+02;SOR=0.458;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,36:72:99:990,0,1059
1	167082869	rs12122365	G	A	1058.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.916;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.246;HaplotypeScore=2.5105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=-0.055;SB=-3.380e+02;SOR=0.429;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,38:59:99:1087,0,565
1	167088473	rs1410244	C	A	463.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.126;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-0.159;SB=-2.701e+01;SOR=1.426;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:492,0,605
1	167095163	rs267745	G	C	892.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.512;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.039;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.791;SB=-4.300e+02;SOR=0.452;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,30:68:99:921,0,1143
1	167095765	rs6668826	G	A	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=-0.094;SB=-2.441e+02;SOR=0.495;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,22:27:99:643,0,119
1	167095881	rs3795605	G	A	943.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.319;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.079;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=1.178;SB=-5.420e+02;SOR=0.297;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,35:54:99:972,0,478
1	167097739	rs2281959	C	A	785.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.651;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-0.024;SB=-3.040e+02;SOR=0.309;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,32:57:99:814,0,753
1	167343255	rs140796646	C	T	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.561;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.154;HaplotypeScore=1.9329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.472;SB=-3.580e+02;SOR=0.420;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,23:46:99:610,0,708
1	167370988	rs2273964	C	A	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.06;ReadPosRankSum=-1.695;SB=0.00;SOR=0.124;VQSLOD=9.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:81:81,0,372
1	167385324	rs34032944	TA	T	115.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.589;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;RPA=19,18;RU=A;ReadPosRankSum=0.000;SB=-7.246e+01;SOR=0.223;STR;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,8:13:16:153,16,0
1	167403504	rs952962	A	G	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-3.077e+01;SOR=3.442;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:406,30,0
1	167404078	rs3108156	G	A	689.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.59;SB=-4.350e+02;SOR=0.941;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:51:718,51,0
1	167407686	rs2462553	T	C	564.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=0.00;SOR=5.549;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:593,45,0
1	167408073	rs2258497	C	A	920.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=0.00;SOR=6.439;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:949,72,0
1	167408670	rs840016	C	T	1181.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-4.760e+02;SOR=1.609;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1210,90,0
1	167515272	rs7513428	T	C	1617.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-9.460e+02;SOR=0.841;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1646,120,0
1	167515307	.	A	C	911.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.752;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.922;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-0.228;SB=-4.960e+02;SOR=0.818;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,32:64:99:940,0,922
1	167778843	rs3213588	G	A	525.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.555;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=0.083;SB=0.00;SOR=2.200;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,16:21:99:554,0,143
1	167779865	rs74486783	A	C	426.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.757;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=2.164;SB=-2.340e+02;SOR=0.877;VQSLOD=7.20;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,16:37:99:455,0,527
1	167793670	rs1476074	C	T	704.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.943;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.645;SB=-1.390e+02;SOR=0.818;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,25:60:99:733,0,983
1	167803432	rs12069151	C	T	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=6.690;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=1.270;SB=-8.397e+01;SOR=0.061;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:296,0,366
1	167803896	rs2863273	T	A	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.565;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=2.394;SB=-3.001e+01;SOR=1.179;VQSLOD=9.12;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,12:20:99:416,0,237
1	167805439	rs7550383	G	A	834.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.486;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.373;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.951;SB=-4.310e+02;SOR=0.359;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,30:57:99:863,0,663
1	167806647	rs1034463	T	A	1352.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-5.010e+02;SOR=1.775;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1381,105,0
1	167806696	rs1034464	T	C	893.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-3.240e+02;SOR=1.863;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:29:66:922,66,0
1	167806714	rs1034465	G	A	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-0.657;SB=-1.420e+02;SOR=0.362;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:390,0,239
1	167815167	rs2269678	T	C	1651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.228;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=1.474;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-2.190;SB=-1.023e+03;SOR=0.575;VQSLOD=7.55;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:57,61:118:99:1680,0,1516
1	167815610	rs2269679	C	A	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.490;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-0.854;SB=-2.901e+01;SOR=0.518;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:460,0,569
1	167817639	rs203795	A	G	2788.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-1.514e+03;SOR=1.251;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2817,211,0
1	167823512	rs3738236	T	C	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.562;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-0.657;SB=-2.657e-01;SOR=2.655;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,15:40:99:482,0,753
1	167825485	rs2071921	T	C	1397.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.704;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.165;SB=-8.080e+02;SOR=0.777;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,54:111:99:1426,0,1604
1	167825718	rs7537851	C	T	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=0.114;SB=-3.400e+01;SOR=0.368;VQSLOD=9.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:157,0,283
1	167839578	rs67878347	G	A	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.089;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-0.116;SB=-9.700e+01;SOR=1.329;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:389,0,197
1	167844553	rs203826	C	A	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.721;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.107;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.635;SB=-5.150e-01;SOR=2.613;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:243,0,269
1	167844582	rs203827	C	G	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.63;ReadPosRankSum=-1.841;SB=-5.150e-01;SOR=1.981;VQSLOD=6.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:121,0,249
1	167849318	rs203847	A	G	366.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.804;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.604;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.586;SB=-9.600e+01;SOR=1.179;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:395,0,426
1	167849414	rs203849	A	G	633.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.553;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-1.287;SB=-3.960e+02;SOR=0.355;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,28:48:99:662,0,524
1	167893759	rs9618	G	A	363.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.824;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.050;HaplotypeScore=4.7964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=0.412;SB=-2.630e+02;SOR=0.269;VQSLOD=8.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,17:36:99:392,0,477
1	167973976	rs1060041	C	T	1619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.192;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=3.048;HaplotypeScore=7.0535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-0.104;SB=-8.240e+02;SOR=0.840;VQSLOD=7.75;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,62:140:99:1648,0,2188
1	167985326	rs3831959	TG	T	724.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.727;DB;DP=39;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.58;RPA=3,2;RU=G;ReadPosRankSum=0.366;SB=-2.650e+02;SOR=0.330;STR;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,21:39:99:762,0,622
1	167988529	rs6700210	A	G	43.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.394;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.37;ReadPosRankSum=0.677;SB=0.00;SOR=0.124;VQSLOD=9.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:72:72,0,352
1	167988653	rs202255	A	G	1141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.394;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.507;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.812;SB=-3.920e+02;SOR=1.227;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1170,0,1065
1	167992344	rs201541	T	A	377.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.398;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=0.166;SB=-1.330e+02;SOR=0.475;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,16:40:99:406,0,664
1	168035104	rs380095	G	C	348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.421;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=1.385;SB=-3.277e+01;SOR=0.223;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:377,0,387
1	168056724	rs275143	A	G	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.809;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=0.000;SB=-7.200e+01;SOR=0.495;VQSLOD=10.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:416,0,326
1	168059866	rs275149	A	G	781.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=5.816;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=1.189;SB=-2.950e+02;SOR=1.425;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,29:52:99:810,0,625
1	168066659	rs7515429	A	G	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.81;ReadPosRankSum=0.913;SB=-2.302e+01;SOR=1.002;VQSLOD=8.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,7:27:99:212,0,603
1	168073601	rs2294817	C	A	645.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.241;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.484;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.662;SB=-9.100e+01;SOR=1.056;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,23:50:99:674,0,844
1	168074145	rs6427119	G	A	820.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.941;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=0.410;SB=-6.100e+01;SOR=1.488;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:849,0,565
1	168200733	rs11588504	T	C	166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.506;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.94;ReadPosRankSum=-0.187;SB=-2.004e+01;SOR=2.129;VQSLOD=6.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:195,0,371
1	168206118	rs55947108	GTTTAA	G	637.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.26;RPA=2,1;RU=TTTAA;ReadPosRankSum=-0.178;SB=-7.676e+01;SOR=0.269;STR;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:19:99:675,0,537
1	168208308	rs12142742	T	C	575.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.662;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.219;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=0.400;SB=-3.800e+02;SOR=0.495;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,24:40:99:604,0,478
1	168262289	rs7543224	A	G	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.925;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-0.330;SB=-3.200e+01;SOR=0.892;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:241,0,329
1	168262299	rs7520743	C	T	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.078;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-2.110;SB=-1.200e+02;SOR=0.573;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:349,0,345
1	168262522	.	AGT	A	216.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=2.008;POSITIVE_TRAIN_SITE;QD=16.67;RPA=21,20;RU=GT;ReadPosRankSum=-0.508;SB=0.00;SOR=2.147;STR;VQSLOD=1.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,10:21:40:254,0,40
1	168262531	.	G	T	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=36.5377;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=0.641;QD=3.11;ReadPosRankSum=-0.673;SB=-9.732e-01;SOR=0.693;VQSLOD=1.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,3:16:78:78,0,400
1	168267092	rs35031496	A	G	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.390;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.64;ReadPosRankSum=1.267;SB=-1.765e+00;SOR=0.495;VQSLOD=9.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:141,0,490
1	168269338	rs2075976	A	C	96.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=1.026;SB=0.00;SOR=0.412;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:125,0,207
1	168278264	rs1883148	G	A	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.173;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.431;SB=-1.765e+00;SOR=1.609;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:372,0,385
1	168282261	rs3885717	T	A	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.209;SB=-2.690e+02;SOR=0.801;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,22:51:99:589,0,917
1	168513243	rs1933114	G	A	1284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.379;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=3.390;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-0.184;SB=-3.210e+02;SOR=1.197;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1313,0,1103
1	168513346	rs3820411	A	T	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.096;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-1.798;SB=0.00;SOR=0.859;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:431,0,345
1	168545758	rs28433337	C	T	262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.924;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.21;ReadPosRankSum=-2.218;SB=-1.765e+00;SOR=0.693;VQSLOD=8.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,10:33:99:291,0,711
1	168549254	rs5024578	A	G	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.892;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=55.20;MQ0=0;MQRankSum=-4.984;POSITIVE_TRAIN_SITE;QD=3.85;ReadPosRankSum=-1.809;SB=-1.765e+00;SOR=0.846;VQSLOD=1.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,9:36:99:167,0,832
1	168550059	rs6687901	C	G	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-0.705;SB=0.00;SOR=0.693;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:198,0,208
1	168665747	rs71685037	C	CT	1096.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.986;DB;DP=43;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.51;ReadPosRankSum=1.244;SB=-5.460e+02;SOR=0.416;VQSLOD=4.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,25:43:99:1134,0,647
1	168665974	rs524705	T	C	283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=-0.817;SB=0.00;SOR=1.609;VQSLOD=10.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:312,0,118
1	168698173	rs1052591	C	T	758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.074;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.058;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-1.990;SB=-3.040e+02;SOR=0.555;VQSLOD=7.92;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,30:60:99:787,0,889
1	169080837	rs1200138	C	T	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=0.205;SB=-3.400e+01;SOR=0.283;VQSLOD=9.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,8:22:99:211,0,458
1	169101257	rs56167655	A	AT	271.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=-1.001;POSITIVE_TRAIN_SITE;QD=6.47;RPA=22,23;RU=T;ReadPosRankSum=0.101;SB=-1.230e+02;SOR=0.743;STR;VQSLOD=2.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,20:49:99:309,0,253
1	169216412	rs2040445	C	G	450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=0.00;SOR=5.283;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:479,36,0
1	169272451	rs10800427	A	T	414.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-1.603e+02;SOR=1.609;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:443,33,0
1	169272453	rs10800428	G	A	369.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-1.573e+02;SOR=1.445;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:398,30,0
1	169356573	.	A	G	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.203;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.73;ReadPosRankSum=0.585;SB=-3.677e+01;SOR=0.165;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:367,0,406
1	169364479	rs17576071	T	G	639.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.129;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-0.468;SB=-2.910e+02;SOR=0.693;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,25:41:99:668,0,491
1	169394226	rs10919168	A	G	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=-0.923;SB=-2.150e+02;SOR=0.576;VQSLOD=8.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,17:47:99:417,0,771
1	169435027	rs2678166	C	T	580.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=-7.797e+01;SOR=3.383;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:609,45,0
1	169493953	rs12131397	A	C	2111.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.21;SB=-2.540e+02;SOR=3.804;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2140,157,0
1	169498834	rs6009	T	C	1031.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.00;SB=-1.483e+02;SOR=3.258;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1060,81,0
1	169515925	rs12139696	A	G	782.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=0.00;SOR=6.184;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:811,60,0
1	169519049	rs6025	T	C	3310.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-1.479e+03;SOR=1.212;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3339,247,0
1	169525808	rs2239854	G	A	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.792;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.560;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.39;ReadPosRankSum=-0.363;SB=-5.200e+01;SOR=1.402;VQSLOD=7.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,15:46:99:322,0,930
1	169541803	rs9332525	C	G	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-0.365;SB=-1.765e+00;SOR=1.112;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:130,0,214
1	169551682	rs6028	T	C	264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.854;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-1.334;SB=-1.760e+02;SOR=0.693;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:293,0,207
1	169560727	.	T	TA	287.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;DP=24;ExcessHet=3.0103;FS=5.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;RPA=12,13;RU=A;ReadPosRankSum=-0.512;SB=-1.173e+02;SOR=0.058;STR;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:24:99:325,0,108
1	169564167	rs742127	G	C	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.690;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.493;SB=-5.150e-01;SOR=3.383;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:390,0,313
1	169566313	rs6127	C	T	1103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.355;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.224;SB=-6.370e+02;SOR=0.743;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,42:85:99:1132,0,1219
1	169572545	rs201543202	CTGTGTGTG	C	512.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.36;RPA=21,17;RU=TG;ReadPosRankSum=1.510;SB=0.00;SOR=1.402;STR;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,6:17:99:550,0,146
1	169572557	rs199963384	G	C	110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.044;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=11.9303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.91;ReadPosRankSum=2.565;SB=-9.732e-01;SOR=2.303;VQSLOD=4.34;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:139,0,206
1	169580717	rs3917731	T	C	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=-1.196;SB=-1.250e+02;SOR=0.653;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:453,0,368
1	169580972	rs61535831	C	CAT	1137.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-1.120e+02;SOR=3.912;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:1175,66,0
1	169582132	rs3917722	T	A	1529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.822;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=5.017;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=-0.824;SB=-6.090e+02;SOR=0.253;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,56:90:99:1558,0,958
1	169599254	rs732314	T	C	1674.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-1.072e+03;SOR=0.836;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1703,123,0
1	169660781	rs12938	A	G	774.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.959;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-0.995;SB=-3.930e+02;SOR=0.696;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,33:74:99:803,0,1016
1	169665551	rs4987358	G	T	463.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.521;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.544;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-1.241;SB=-1.350e+02;SOR=1.525;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,17:45:99:492,0,741
1	169665632	rs2223286	T	C	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.485;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.512;SB=-3.310e+02;SOR=0.387;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,22:47:99:564,0,777
1	169676486	rs1131498	A	G	542.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.313;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=0.509;SB=-2.960e+02;SOR=0.527;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,22:32:99:571,0,267
1	169679553	rs4987280	C	T	1606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=3.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-0.074;SB=-5.210e+02;SOR=1.119;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,58:115:99:1635,0,1534
1	169697444	rs1076637	C	T	367.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.909;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=2.139;SB=-1.120e+02;SOR=1.227;VQSLOD=7.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,15:41:99:396,0,686
1	169698825	rs1534904	T	G	2633.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-1.354e+03;SOR=1.068;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2662,193,0
1	169698921	rs2076059	C	T	777.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.246;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.136;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.393;SB=-3.760e+02;SOR=0.402;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,29:53:99:806,0,682
1	169699466	rs60426343	CA	C	386.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DB;DP=43;ExcessHet=3.0103;FS=3.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;RPA=10,9;RU=A;ReadPosRankSum=0.705;SB=-3.500e+01;SOR=1.781;STR;VQSLOD=6.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,21:43:99:424,0,523
1	169699819	rs3917419	G	A	576.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-0.834;SB=-1.460e+02;SOR=0.732;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,22:55:99:605,0,858
1	169702705	rs932307	G	A	1071.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.149;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=6.711;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=0.443;SB=-4.390e+02;SOR=1.315;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,41:101:99:1100,0,1569
1	169764568	rs3766132	C	G	277.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SB=-1.951e+02;SOR=0.836;VQSLOD=3.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:21:306,21,0
1	169768033	rs6680938	T	C	1015.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.93;SB=-1.205e+02;SOR=3.841;VQSLOD=4.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:30:78:1044,78,0
1	169768080	rs6668114	C	A	1687.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-4.650e+02;SOR=2.480;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1716,126,0
1	169773160	rs3766138	T	C	903.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.354;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.265;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=1.282;SB=-1.700e+02;SOR=0.456;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,32:80:99:932,0,1525
1	169773317	rs11590604	G	A	2029.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-11.423;DB;DP=199;Dels=0.00;ExcessHet=3.0103;FS=1.772;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=-0.318;SB=-1.221e+03;SOR=0.552;VQSLOD=5.92;culprit=DP	GT:AD:DP:GQ:PL	0/1:115,84:199:99:2058,0,3254
1	169777169	rs34657513	T	C	230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.165;SB=-1.300e+02;SOR=0.385;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:259,0,210
1	169800062	rs10489175	C	T	519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.117;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=-0.187;SB=0.00;SOR=0.826;VQSLOD=9.59;culprit=SOR	GT:AD:DP:GQ:PL	0/1:14,16:30:99:548,0,413
1	169818880	rs2272918	G	A	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=-1.026;SB=0.00;SOR=1.085;VQSLOD=10.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:199,0,132
1	169819605	rs6664099	A	G	695.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-1.423e+02;SOR=2.636;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:724,54,0
1	169823296	.	G	GCTTGACTTGA	917.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;RPA=2,4;RU=CTTGA;ReadPosRankSum=0.854;SB=0.00;SOR=0.307;STR;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:955,0,1690
1	169823660	rs1062976	C	T	1812.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.624;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.261;SB=-1.067e+03;SOR=0.690;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,69:128:99:1841,0,1599
1	169823718	.	T	C	3747.77	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.23;SB=-1.957e+03;SOR=1.169;VQSLOD=4.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,120:121:99:3776,289,0
1	169831690	rs5778632	CTCTT	C	1082.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DB;DP=50;ExcessHet=3.0103;FS=3.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;RPA=2,1;RU=TCTT;ReadPosRankSum=-1.347;SB=-2.900e+02;SOR=0.321;STR;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,20:50:99:1120,0,1851
1	169831993	rs7525259	A	G	880.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-1.643e+02;SOR=3.014;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:909,66,0
1	169833822	rs1883436	T	C	583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=0.00;SOR=5.784;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:612,51,0
1	169838278	rs17603022	G	A	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.860;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=1.883;SB=-1.310e+02;SOR=0.776;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,17:27:99:430,0,237
1	169847683	rs6683056	G	A	356.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=0.00;SOR=4.804;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:385,30,0
1	169890933	rs518928	A	G	1893.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-7.730e+02;SOR=1.727;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1922,138,0
1	169891056	rs3838393	CT	C	251.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.88;RPA=10,9;RU=T;SB=0.00;SOR=4.977;STR;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:15:33:289,33,0
1	169941761	rs511443	A	T	450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;SB=-1.553e+02;SOR=2.049;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:479,36,0
1	169947146	.	C	CA	1082.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.426;POSITIVE_TRAIN_SITE;QD=21.23;RPA=11,12;RU=A;ReadPosRankSum=-0.410;SB=-1.521e+02;SOR=0.669;STR;VQSLOD=3.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:6,45:55:17:1120,17,0
1	169951748	rs638486	A	G	369.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=0.00;SOR=4.977;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:398,33,0
1	169952385	rs2057249	G	T	570.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=0.00;SOR=5.784;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:599,45,0
1	170001151	rs11277624	ATACTCATT	A	2900.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.27;SB=-5.891e+02;SOR=2.670;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:30:78:2938,78,0
1	170015700	rs7555871	T	C	647.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=0.00;SOR=5.784;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:676,51,0
1	170115156	rs550297	G	A	459.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-1.483e+02;SOR=1.911;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:488,36,0
1	170135510	rs576572	T	C	571.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=0.00;SOR=5.994;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:600,51,0
1	170338606	rs10800514	C	A	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=1.521;SB=-2.701e+01;SOR=1.179;VQSLOD=8.63;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:157,0,322
1	170501385	rs7531125	A	C	1303.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-6.790e+02;SOR=1.022;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1332,96,0
1	170501521	rs112197426	AC	A	382.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;DB;DP=35;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-0.213;SB=-2.030e+02;SOR=0.238;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,11:35:99:420,0,1058
1	170511604	rs7538037	T	C	480.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.735;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.144;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=-0.497;SB=-8.097e+01;SOR=0.061;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:509,0,557
1	170521376	rs913257	G	A	976.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.797;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.519;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=-0.334;SB=-4.440e+02;SOR=0.819;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,33:48:99:1005,0,400
1	170521650	rs7552922	T	G	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-1.010;SB=-6.500e+01;SOR=0.160;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:14:99:161,0,241
1	170916646	rs4656817	G	T	1512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.419;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.450;SB=-1.014e+03;SOR=0.556;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,61:125:99:1541,0,1706
1	170927572	rs367560788	T	TC	4262.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;DB;DP=119;ExcessHet=3.0103;FS=11.003;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.30;ReadPosRankSum=-0.298;SB=-1.778e+03;SOR=0.669;VQSLOD=3.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:3,112:119:99:4300,305,0
1	170927573	.	T	C	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;DP=116;Dels=0.00;ExcessHet=3.0103;FS=2.988;HaplotypeScore=94.7518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-3.456;SB=-2.250e+02;SOR=1.164;VQSLOD=3.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:83,31:116:99:680,0,2231
1	170928671	rs2294740	T	C	4556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9290;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-2.555e+03;SOR=1.041;VQSLOD=5.20;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4585,328,0
1	170928973	rs2294741	T	C	1711.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;SB=-3.790e+02;SOR=2.448;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1740,126,0
1	170993444	rs72386119	G	GGT	354.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=1.982;QD=29.56;RPA=14,15;RU=GT;ReadPosRankSum=1.506;SB=-4.376e+01;SOR=1.329;STR;VQSLOD=1.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,10:12:43:392,0,43
1	171080080	rs1736557	G	A	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=0.601;SB=-3.580e+02;SOR=0.797;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,26:36:99:680,0,248
1	171112490	rs1736565	C	T	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=0.851;SB=-3.400e+01;SOR=0.346;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:252,0,463
1	171119021	rs1795244	T	C	319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.490;SB=0.00;SOR=1.061;VQSLOD=10.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:348,0,216
1	171120945	rs141892993	CTGATGTTTAACTGCT	C	1174.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.36;ReadPosRankSum=0.542;SB=0.00;SOR=1.270;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:1212,0,674
1	171130598	rs145126383	CACACA	C	597.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.995;DB;DP=19;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-0.222;SB=-8.076e+01;SOR=0.124;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:19:99:635,0,818
1	171154959	rs2020870	A	G	2095.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.856;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=2.993;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.415;SB=-1.069e+03;SOR=0.490;VQSLOD=7.69;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,76:148:99:2124,0,1849
1	171155103	rs6657314	C	T	1202.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.59;SB=-7.997e+01;SOR=4.743;VQSLOD=4.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1231,93,0
1	171168584	rs2020862	C	T	1713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SB=-5.410e+02;SOR=1.958;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1742,129,0
1	171168585	rs2020861	A	G	1674.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-4.950e+02;SOR=2.160;VQSLOD=7.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1703,126,0
1	171168693	rs7542361	C	T	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=1.723;SB=0.00;SOR=1.802;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:76:265,0,76
1	171174531	rs2020863	A	G	967.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-0.422;SB=-5.720e+02;SOR=0.709;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,37:93:99:996,0,1584
1	171177119	rs2075989	T	C	30.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=5.229;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.08;ReadPosRankSum=0.000;SB=-3.876e+01;SOR=0.035;VQSLOD=6.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:59:59,0,242
1	171227216	rs10912675	T	C	3161.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-1.242e+03;SOR=1.420;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3190,238,0
1	171300959	rs2294482	T	C	831.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.867;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=6.033;HaplotypeScore=2.5885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=-1.910;SB=-4.310e+02;SOR=0.267;VQSLOD=7.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,34:92:99:860,0,1577
1	171301033	rs2294483	C	G	1012.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.6006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-1.633e+02;SOR=3.675;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:35:78:1041,78,0
1	171301043	.	G	GA	411.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.56;RPA=12,13;RU=A;ReadPosRankSum=0.694;SB=-3.277e+01;SOR=2.303;STR;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,18:26:10:448,10,0
1	171302094	rs4140632	A	C	947.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;SB=0.00;SOR=6.439;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:976,72,0
1	171303925	rs3820170	C	T	3598.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-1.418e+03;SOR=1.715;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3627,271,0
1	171306323	rs3737924	C	T	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.04;ReadPosRankSum=-1.053;SB=-5.700e+01;SOR=0.527;VQSLOD=9.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:124,0,342
1	171311003	rs1042772	A	C	1677.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-6.320e+02;SOR=1.697;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1706,123,0
1	171482686	rs2294292	A	T	507.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.052;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=1.711;SB=-2.901e+01;SOR=1.287;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,17:40:99:536,0,706
1	171482699	rs2294293	G	C	483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.971;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=1.658;SB=-9.732e-01;SOR=1.828;VQSLOD=6.66;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,15:37:99:512,0,726
1	171483717	rs1055417	A	C	1232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.197;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-1.415;SB=-3.940e+02;SOR=0.735;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1261,0,1407
1	171491264	rs3736679	T	A	632.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=-0.634;SB=-1.810e+02;SOR=0.278;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,21:31:99:661,0,275
1	171496875	rs139849492	A	G	507.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.867;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.582;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-2.297;SB=-1.820e+02;SOR=0.274;VQSLOD=7.14;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,20:41:99:536,0,617
1	171496895	rs10753126	A	G	1713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-6.770e+02;SOR=1.697;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1742,126,0
1	171509058	rs2015996	G	A	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-7.797e+01;SOR=2.494;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:394,30,0
1	171509322	.	T	C	656.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.921;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.280;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.581;SB=-3.810e+02;SOR=0.381;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,24:60:99:685,0,1090
1	171509327	rs760644	G	A	2079.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=-1.027e+03;SOR=1.044;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2108,157,0
1	171511039	rs1687064	C	G	1621.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-8.480e+02;SOR=0.859;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1650,126,0
1	171511442	rs2272810	A	G	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.632;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=0.847;SB=-8.297e+01;SOR=0.191;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:363,0,223
1	171514731	rs235468	C	G	608.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-1.245e+02;SOR=2.531;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:21:48:637,48,0
1	171519487	rs235470	A	C	554.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=-1.971e+02;SOR=1.981;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:583,45,0
1	171526570	rs1687057	G	A	1630.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-7.580e+02;SOR=1.225;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1659,120,0
1	171527322	rs235482	A	G	451.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SB=0.00;SOR=5.136;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:480,36,0
1	171546833	rs6685179	C	A	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.971;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2814;MLEAC=1;MLEAF=0.500;MQ=61.34;MQ0=0;MQRankSum=-0.426;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.661;SB=-8.900e+01;SOR=0.363;VQSLOD=3.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,11:32:99:324,0,580
1	171546910	.	A	ATAAT	600.73	PASS	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=63.82;MQ0=0;QD=30.17;SB=0.00;SOR=4.977;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:638,33,0
1	171548772	rs235488	A	G	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.379;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=7.225;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=1.256;SB=-9.732e-01;SOR=3.056;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:386,0,296
1	171548868	rs235489	T	C	376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-8.297e+01;SOR=2.670;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:405,30,0
1	171553778	rs235495	A	G	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.516;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.812;SB=-7.002e+01;SOR=0.610;VQSLOD=10.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:368,0,227
1	171556165	rs235501	G	C	3577.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-1.861e+03;SOR=1.244;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3606,259,0
1	171558516	rs235503	C	T	1636.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=25.9286;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-3.910e+02;SOR=2.608;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:50:99:1665,126,0
1	171607702	rs2032555	C	T	1085.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-5.200e+02;SOR=1.244;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1114,81,0
1	171639719	rs112979407	T	C	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.15;ReadPosRankSum=-0.141;SB=-2.801e+01;SOR=0.512;VQSLOD=8.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,6:18:99:157,0,376
1	171639868	rs112423609	C	T	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.490;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.549;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=0.306;SB=-1.970e+02;SOR=0.260;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:331,0,504
1	171675296	rs236899	A	G	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.116;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-1.116;SB=-2.170e+02;SOR=0.339;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:360,0,366
1	171679958	rs10913530	G	A	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.195;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=9.156;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.872;SB=-1.180e+02;SOR=2.186;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,26:53:99:718,0,704
1	171707272	rs10753179	T	C	332.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-4.276e+01;SOR=3.258;VQSLOD=4.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:361,27,0
1	171731608	.	C	T	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.05;ReadPosRankSum=-0.142;SB=-6.700e+01;SOR=1.179;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:281,0,119
1	171750854	rs2294718	C	G	870.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=0.610;SB=-2.571e+02;SOR=0.546;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,31:43:99:899,0,295
1	171751051	rs2294719	A	G	940.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.522;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=5.094;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.55;ReadPosRankSum=1.179;SB=-3.870e+02;SOR=1.218;VQSLOD=7.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:74,36:110:99:969,0,1988
1	171751236	rs2294720	T	C	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.374;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.31;ReadPosRankSum=1.583;SB=-1.200e+02;SOR=0.555;VQSLOD=8.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,12:44:99:350,0,863
1	171755182	rs2232819	G	A	921.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.928;HaplotypeScore=1.8914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=0.081;SB=-3.570e+02;SOR=0.276;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,32:64:99:950,0,878
1	171761458	rs2232824	T	C	1759.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.863;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.729;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.881;SB=-6.160e+02;SOR=0.817;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,64:126:99:1788,0,1557
1	171763549	rs2232825	C	T	638.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.87;ReadPosRankSum=-1.018;SB=-2.460e+02;SOR=0.597;VQSLOD=8.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,28:72:99:667,0,1175
1	171765964	rs1801898	A	G	1086.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.332;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=-0.851;SB=-3.500e+01;SOR=1.514;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,32:49:99:1115,0,499
1	171956803	rs3736790	C	T	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-1.734;SB=-1.300e+02;SOR=0.948;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:367,0,264
1	172038079	rs12760234	T	C	2277.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-1.241e+03;SOR=1.002;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2306,166,0
1	172277925	rs34870740	C	T	720.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.227;HaplotypeScore=2.6594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-0.516;SB=-4.380e+02;SOR=0.379;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,28:73:99:749,0,1134
1	172356437	rs6688654	A	G	1042.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-3.950e+02;SOR=1.473;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1071,81,0
1	172377024	rs12408776	G	A	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=1.022;SB=-1.360e+02;SOR=0.693;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:317,0,246
1	172399346	rs200979934	TAA	T	563.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=1.784;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=-0.538;SB=-1.000e+02;SOR=0.634;VQSLOD=3.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,13:32:99:601,0,1003
1	172400009	rs35527973	AT	A	252.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;DB;DP=23;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;RPA=3,2;RU=T;ReadPosRankSum=0.189;SB=-2.701e+01;SOR=1.646;STR;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:290,0,479
1	172410967	rs1063412	G	A	1153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.847;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=3.249;HaplotypeScore=3.5044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-0.137;SB=-4.650e+02;SOR=1.129;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,44:76:99:1182,0,821
1	172411496	rs2230471	A	G	1310.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.44;SB=-6.120e+02;SOR=1.002;VQSLOD=4.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1339,99,0
1	172411768	rs13932	T	C	1062.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.414;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.891;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=1.472;SB=-3.530e+02;SOR=0.931;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,38:85:99:1091,0,1214
1	172422209	rs2285175	C	T	752.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.991;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.619;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.109;SB=-1.530e+02;SOR=1.244;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,27:55:99:781,0,801
1	172422649	rs929098	A	G	262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=-0.789;SB=0.00;SOR=1.802;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:81:291,0,81
1	172425529	rs2285170	C	G	1159.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.997;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=2.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=-0.075;SB=-6.700e+02;SOR=0.584;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1188,0,987
1	172431210	rs4916261	G	A	692.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.84;SB=0.00;SOR=5.994;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:721,57,0
1	172434309	rs9425328	G	A	643.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=0.00;SOR=5.784;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:672,51,0
1	172434375	rs2901655	G	A	1774.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-3.860e+02;SOR=2.833;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1803,138,0
1	172434812	rs2901656	C	T	970.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.476;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.494;SB=-4.170e+02;SOR=1.179;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,38:67:99:999,0,722
1	172437592	rs1129942	G	A	1870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=-7.320e+02;SOR=1.487;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1899,144,0
1	172501643	rs2239816	T	C	971.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.173;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-0.301;SB=-5.180e+02;SOR=0.774;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,40:97:99:1000,0,1545
1	172502340	rs2285143	T	C	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=-1.704;SB=-1.765e+00;SOR=2.419;VQSLOD=6.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:246,0,135
1	172502479	.	T	C	403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.157;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.518;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.42;ReadPosRankSum=0.484;SB=-2.060e+02;SOR=1.032;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:432,0,341
1	172502727	rs55696309	TA	T	903.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.617;DB;DP=36;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=0.069;SB=-4.140e+02;SOR=0.639;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,25:36:99:941,0,420
1	172539442	rs3752515	A	G	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.308;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-0.150;SB=0.00;SOR=1.609;VQSLOD=10.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:292,0,118
1	172547465	rs2285664	A	G	827.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.235;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.866;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-0.357;SB=-5.310e+02;SOR=0.578;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,34:75:99:856,0,994
1	172554867	rs10752995	T	A	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=1.930;SB=0.00;SOR=0.368;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:154,0,281
1	172634734	rs2639653	T	C	2626.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-1.477e+03;SOR=0.908;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2655,190,0
1	172718106	rs115457643	A	G	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.745;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.619;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-0.137;SB=-1.290e+02;SOR=1.270;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:311,0,459
1	172718554	rs143258936	TC	T	329.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;DB;DP=18;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.40;RPA=5,4;RU=C;ReadPosRankSum=0.503;SB=-9.900e+01;SOR=1.802;STR;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:18:99:367,0,187
1	173490616	.	C	CTATATA	645.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;RPA=10,13;RU=TA;ReadPosRankSum=-1.021;SB=-8.041e+01;SOR=0.804;STR;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:25:99:683,0,544
1	173556699	rs301698	G	T	296.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-4.176e+01;SOR=3.258;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:325,24,0
1	173594213	rs301701	T	C	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.935;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=-0.510;SB=0.00;SOR=0.627;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:453,0,459
1	173702764	rs45467799	C	T	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.357;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-0.412;SB=-1.765e+00;SOR=1.426;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:243,0,272
1	173724942	rs2273366	A	G	159.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.263;SB=0.00;SOR=0.859;VQSLOD=10.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:188,0,161
1	173735570	rs56048122	A	G	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=0.200;SB=0.00;SOR=0.693;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:132,0,165
1	173780119	rs2144708	A	G	123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=1.248;SB=0.00;SOR=0.551;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:152,0,207
1	173797451	rs55878143	T	C	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.983;HaplotypeScore=10.5733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-2.396;SB=-1.321e+01;SOR=1.802;VQSLOD=4.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,8:32:99:227,0,589
1	173802433	rs3835254	GA	G	269.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;RPA=4,3;RU=A;ReadPosRankSum=1.621;SB=0.00;SOR=0.784;STR;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:307,0,284
1	173825692	rs2295366	T	G	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.22;ReadPosRankSum=0.528;SB=0.00;SOR=0.193;VQSLOD=9.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:151,0,370
1	173834332	.	T	TAA	238.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.05;RPA=16,18;RU=A;ReadPosRankSum=-2.336;SB=-3.501e+01;SOR=1.179;STR;VQSLOD=8.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,10:14:94:276,0,94
1	173835211	rs2067079	C	T	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.486;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-0.514;SB=-1.430e+02;SOR=0.385;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:446,0,474
1	173836194	rs17359906	G	A	643.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.404;HaplotypeScore=5.0468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=-0.830;SB=-1.950e+02;SOR=0.379;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,24:47:99:672,0,647
1	173836247	.	T	TA	352.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;DP=28;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.06;RPA=7,8;RU=A;ReadPosRankSum=0.269;SB=-6.497e+01;SOR=0.121;STR;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:28:99:390,0,260
1	173839240	rs1322774	C	T	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.21;ReadPosRankSum=1.193;SB=-9.732e-01;SOR=1.002;VQSLOD=8.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,6:23:99:171,0,541
1	173842467	rs9286895	A	G	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=0.000;SB=0.00;SOR=0.330;VQSLOD=9.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:114,0,245
1	173855298	rs1322775	A	T	764.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=1.258;SB=-1.270e+02;SOR=0.651;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,27:65:99:793,0,1089
1	173878832	rs5878	T	C	1778.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=1.479;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=1.010;SB=-8.840e+02;SOR=0.514;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,62:124:99:1807,0,1897
1	173878862	rs5877	T	C	1831.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=3.974;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-1.169;SB=-8.820e+02;SOR=1.016;VQSLOD=7.80;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,67:141:99:1860,0,2097
1	174188285	rs2103640	G	A	609.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.012;SB=-2.910e+02;SOR=0.495;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:44:99:638,0,543
1	174210910	rs12136358	G	A	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.18;ReadPosRankSum=-0.536;SB=0.00;SOR=0.223;VQSLOD=9.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:90:90,0,253
1	174221887	rs11351373	GT	G	214.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;DB;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;RPA=3,2;RU=T;ReadPosRankSum=0.069;SB=-1.765e+00;SOR=2.093;STR;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:252,0,191
1	174274062	rs2142864	A	G	699.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.419;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.556;HaplotypeScore=2.8489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=-0.749;SB=-2.500e+02;SOR=0.203;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,25:41:99:728,0,414
1	174274349	rs2860909	T	G	1001.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.178;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.253;SB=-3.400e+02;SOR=0.627;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,37:76:99:1030,0,1043
1	174339970	rs10912772	A	G	569.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.310;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=-0.138;SB=0.00;SOR=0.811;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:598,0,534
1	174362965	rs10912778	T	C	438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.904;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=-1.411;SB=-4.276e+01;SOR=0.631;VQSLOD=8.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,15:22:99:467,0,215
1	174417231	rs7516240	G	A	3133.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-1.476e+03;SOR=1.480;VQSLOD=5.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3162,238,0
1	174516999	rs41266050	C	T	557.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.451;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.325;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.857;SB=-3.810e+02;SOR=0.293;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,24:44:99:586,0,499
1	174927388	rs10798329	G	C	753.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=-4.276e+01;SOR=4.615;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:782,57,0
1	174945171	rs142125254	CTGTATGACTGTGA	C	2008.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;RPA=2,1;RU=TGTATGACTGTGA;ReadPosRankSum=1.761;SB=-7.280e+02;SOR=0.869;STR;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,14:43:99:2046,0,4088
1	174969271	rs1046439	C	T	505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-1.573e+02;SOR=2.179;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:534,39,0
1	174984072	rs199952908	TTC	T	385.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.412;DB;DP=17;ExcessHet=3.0103;FS=9.294;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.69;ReadPosRankSum=1.123;SB=-3.513e+01;SOR=4.163;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,16:17:43:423,43,0
1	175014250	rs7355181	A	G	869.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-2.031e+02;SOR=2.494;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:898,66,0
1	175046488	rs2072033	G	A	587.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.007;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.137;SB=-1.350e+02;SOR=0.294;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,22:35:99:616,0,352
1	175046789	rs2072032	A	G	3260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.420;DB;DP=235;Dels=0.00;ExcessHet=3.0103;FS=0.481;HaplotypeScore=5.1629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.199;SB=-1.800e+03;SOR=0.728;VQSLOD=4.71;culprit=DP	GT:AD:DP:GQ:PL	0/1:112,122:235:99:3289,0,2997
1	175052828	rs2072031	G	A	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.522;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.968;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=0.000;SB=-1.670e+02;SOR=1.321;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,31:55:99:944,0,761
1	175053101	rs2072030	A	T	1340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=5.370;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.481;SB=-5.820e+02;SOR=0.324;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,55:117:99:1369,0,1792
1	175054548	rs1573758	C	T	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.719;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.057;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=0.553;SB=-2.080e+02;SOR=0.880;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,25:62:99:636,0,1025
1	175068011	rs744008	T	A	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-1.437;SB=0.00;SOR=0.693;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:159,0,166
1	175092674	rs2285215	C	T	973.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.337;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=0.337;SB=-4.300e+02;SOR=0.916;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,32:69:99:1002,0,1068
1	175092707	rs10798333	C	T	879.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.406;SB=-5.180e+02;SOR=0.563;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,32:73:99:908,0,1228
1	175092840	rs2072041	T	C	1137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.449;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=3.071;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.825;SB=-6.330e+02;SOR=0.409;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,44:82:99:1166,0,1082
1	175092992	rs10568684	GGAGT	G	860.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.73;RPA=2,1;RU=GAGT;SB=-7.176e+01;SOR=3.767;STR;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:14:39:898,39,0
1	175095936	rs7515770	C	T	265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-1.288;SB=-1.765e+00;SOR=1.981;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:294,0,277
1	175096333	rs2072040	A	G	456.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.311;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.907;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=-0.669;SB=-2.501e+01;SOR=1.162;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,16:46:99:485,0,896
1	175097331	rs10912891	G	A	2478.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=-1.115e+03;SOR=1.195;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2507,187,0
1	175097349	rs7547567	C	T	616.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.137;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=0.782;SB=-3.070e+02;SOR=0.663;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,25:68:99:645,0,1250
1	175097357	rs2269652	C	G	1221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=-1.187;SB=-6.160e+02;SOR=0.735;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,44:68:99:1250,0,617
1	175097864	rs12022593	G	A	799.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.089;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=5.772;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=1.246;SB=-5.760e+02;SOR=0.283;VQSLOD=6.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,36:88:99:828,0,1454
1	175097991	rs10798335	C	T	733.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-2.061e+02;SOR=2.400;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:762,57,0
1	175104719	rs4651322	T	C	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=-0.728;SB=0.00;SOR=1.270;VQSLOD=10.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:245,0,127
1	175104796	rs4651324	G	T	1883.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.85;SB=-1.593e+02;SOR=4.493;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1912,141,0
1	175105778	rs2072038	T	C	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-0.608;SB=0.00;SOR=1.085;VQSLOD=10.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:212,0,130
1	175105880	rs2072037	G	A	420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.368;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.170;SB=-1.300e+02;SOR=0.693;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:449,0,429
1	175105942	rs4650703	G	A	1588.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-5.910e+02;SOR=1.708;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1617,120,0
1	175105996	rs2072036	C	T	1106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=0.397;SB=-5.360e+02;SOR=0.617;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,37:58:99:1135,0,513
1	175113578	rs10912897	T	C	2518.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-1.026e+03;SOR=1.409;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2547,190,0
1	175116046	.	C	CT	704.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.645;POSITIVE_TRAIN_SITE;QD=16.02;RPA=15,16;RU=T;ReadPosRankSum=-0.401;SB=-3.130e+02;SOR=0.789;STR;VQSLOD=3.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,30:51:82:653,0,82
1	175116252	rs4651335	C	G	1148.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.91;SB=-7.597e+01;SOR=4.615;VQSLOD=3.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:87:1177,87,0
1	175129924	rs150137790	CCTTCTTCTT	C	2483.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.64;MQ0=0;MQRankSum=1.931;POSITIVE_TRAIN_SITE;QD=15.33;RPA=10,7;RU=CTT;ReadPosRankSum=-0.182;SB=-6.870e+02;SOR=0.578;STR;VQSLOD=3.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,29:67:99:2521,0,1613
1	175129946	rs2072035	C	T	1155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.917;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.59;MQ0=0;MQRankSum=-2.235;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-1.702;SB=-4.010e+02;SOR=0.856;VQSLOD=2.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,40:73:99:1184,0,851
1	175130119	rs116333252	T	C	1517.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.069;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=8.819;HaplotypeScore=2.6000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.050;SB=-5.020e+02;SOR=1.472;VQSLOD=4.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:68,52:120:99:1546,0,1681
1	175130204	rs1057239	G	A	1358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.004;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=0.227;SB=-5.540e+02;SOR=0.556;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,48:72:99:1387,0,640
1	175130276	rs1135289	G	A	962.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-2.690e+02;SOR=2.376;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:991,75,0
1	175293424	rs2213635	T	C	588.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.536;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-0.649;SB=0.00;SOR=0.693;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,18:36:99:617,0,609
1	175299301	rs2027867	T	C	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=10.824;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=1.004;SB=-3.270e+02;SOR=0.078;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,20:36:99:529,0,476
1	175323446	rs2301432	A	G	289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=-0.338;SB=-4.176e+01;SOR=0.941;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:75:318,0,75
1	175324518	rs55715761	GCA	G	857.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;DB;DP=46;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=2.478;SB=-1.760e+02;SOR=1.345;VQSLOD=6.63;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,19:46:99:895,0,1486
1	175324521	rs55973835	A	T	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.798;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.825;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.25;ReadPosRankSum=2.847;SB=-8.400e+01;SOR=1.201;VQSLOD=5.20;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,19:48:99:472,0,771
1	175324651	rs2228359	A	G	1327.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=1.713;SB=-7.930e+02;SOR=0.633;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,52:114:99:1356,0,1730
1	175324711	rs61731115	G	A	1005.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.971;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-1.151;SB=-4.010e+02;SOR=0.802;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,36:75:99:1034,0,1144
1	175331617	rs79247495	C	A	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=0.342;SB=-7.201e+01;SOR=0.776;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:417,0,217
1	175335412	rs1385540	A	C	367.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.093;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=-0.743;SB=0.00;SOR=1.022;VQSLOD=10.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:396,0,260
1	175336530	rs6697701	T	C	888.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.827;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.119;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=-1.902;SB=-4.580e+02;SOR=0.458;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,32:53:99:917,0,615
1	175336619	rs6697801	T	C	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=1.724;SB=-1.420e+02;SOR=0.573;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:403,0,289
1	175348543	rs859426	T	C	283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.424;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-0.263;SB=-7.000e+01;SOR=0.693;VQSLOD=10.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:312,0,342
1	175348723	rs859427	C	T	1399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.688;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-1.143;SB=-8.030e+02;SOR=0.621;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,56:117:99:1428,0,1653
1	175349054	rs10912967	A	C	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.984;SB=0.00;SOR=1.445;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:260,0,126
1	175355128	rs859436	C	G	633.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=6.275;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=0.080;SB=-9.800e+01;SOR=2.043;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:662,0,410
1	175355152	rs72723450	C	T	771.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.503;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-0.705;SB=-1.300e+02;SOR=1.634;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,25:42:99:800,0,460
1	175355391	rs859437	A	G	2404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=-1.349e+03;SOR=0.693;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2433,187,0
1	175355618	rs859438	T	C	1254.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.69;SB=-1.245e+02;SOR=4.112;VQSLOD=3.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1283,93,0
1	175360690	rs859444	C	T	922.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-4.100e+02;SOR=1.255;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:951,72,0
1	175362736	rs3752517	G	A	396.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.88;SB=0.00;SOR=4.977;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:425,33,0
1	175365663	rs859446	G	A	1256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.681;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-0.719;SB=-7.600e+02;SOR=0.970;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,53:100:99:1285,0,1252
1	175375334	rs859400	C	T	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.787;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=1.483;SB=0.00;SOR=0.132;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:215,0,388
1	175375469	rs2239819	C	A	1314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.949;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=5.219;HaplotypeScore=2.6492;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=1.101;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.761;SB=-6.140e+02;SOR=0.332;VQSLOD=0.408;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:61,52:113:99:1343,0,1918
1	175375683	rs859399	T	C	5788.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=181;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-3.284e+03;SOR=0.704;VQSLOD=5.14;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5817,439,0
1	175375729	.	T	C	2331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.231;DP=185;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.60;ReadPosRankSum=1.196;SB=-1.242e+03;SOR=0.813;VQSLOD=5.06;culprit=DP	GT:AD:DP:GQ:PL	0/1:97,88:185:99:2360,0,2706
1	175375802	rs859398	T	C	6450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=214;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-4.062e+03;SOR=0.811;VQSLOD=3.97;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,214:214:99:6479,485,0
1	175376019	rs60974501	AG	A	1143.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;RPA=8,7;RU=G;SB=0.00;SOR=7.112;STR;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:40:99:1181,102,0
1	175911397	rs10436864	T	C	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.18;ReadPosRankSum=-0.549;SB=0.00;SOR=0.223;VQSLOD=9.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:90:90,0,236
1	175916267	rs6674353	T	C	4229.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-2.413e+03;SOR=0.770;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4258,310,0
1	175916506	rs34272809	AT	A	147.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=1.382;POSITIVE_TRAIN_SITE;QD=7.03;RPA=18,17;RU=T;ReadPosRankSum=0.107;SB=-1.204e+01;SOR=0.307;STR;VQSLOD=3.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,12:22:99:185,0,127
1	175937540	rs4534339	C	T	2420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-1.026e+03;SOR=1.371;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2449,181,0
1	175951347	rs10798430	T	A	1290.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-6.280e+02;SOR=1.096;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1319,99,0
1	175955734	rs9783047	T	A	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.107;SB=0.00;SOR=0.465;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:292,0,425
1	176050430	.	GA	G	349.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=1.342;POSITIVE_TRAIN_SITE;QD=7.60;RPA=16,15;RU=A;ReadPosRankSum=-0.276;SB=-1.380e+02;SOR=0.600;STR;VQSLOD=2.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,25:55:99:387,0,382
1	176103053	rs34010407	TAC	T	316.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;DB;DP=17;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.63;RPA=2,1;RU=AC;ReadPosRankSum=-1.532;SB=-4.000e+01;SOR=1.828;STR;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:354,0,415
1	176105710	rs373330844	CA	C	188.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;DB;DP=56;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.50;RPA=12,11;RU=A;ReadPosRankSum=1.687;SB=-8.600e+01;SOR=0.976;STR;VQSLOD=4.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,16:56:99:226,0,883
1	176118219	rs3748618	G	A	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.949;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.594;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-1.280;SB=-2.560e+02;SOR=1.081;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,20:45:99:565,0,652
1	176118410	rs74127190	C	T	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=0.200;SB=-3.400e+01;SOR=0.693;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:134,0,142
1	176129391	.	CTT	C	246.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=0.828;POSITIVE_TRAIN_SITE;QD=8.23;RPA=28,26;RU=T;ReadPosRankSum=0.000;SB=-2.005e+01;SOR=1.739;STR;VQSLOD=2.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,13:49:99:262,0,217
1	176132292	rs704828	C	T	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-1.145e+02;SOR=2.948;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:628,48,0
1	176153658	rs791744	T	C	335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.99;ReadPosRankSum=0.853;SB=-5.600e+01;SOR=1.022;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:364,0,123
1	176175910	rs140755121	A	G	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.829;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.16;ReadPosRankSum=1.210;SB=-8.297e+01;SOR=0.204;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:405,0,145
1	176671914	rs2985893	A	T	129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;DB;DP=21;Dels=0.05;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=1.029;QD=6.49;ReadPosRankSum=-1.736;SB=-2.203e+01;SOR=0.693;VQSLOD=1.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:99:158,0,372
1	176681165	rs66731142	ATG	A	443.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;DB;DP=29;ExcessHet=3.0103;FS=2.730;MLEAC=1;MLEAF=0.500;MQ=60.37;MQ0=0;MQRankSum=0.808;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.13;RPA=14,13;RU=TG;ReadPosRankSum=0.374;SB=-8.297e+01;SOR=0.257;STR;VQSLOD=0.351;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,14:29:99:481,0,212
1	176845410	rs2076340	G	C	1126.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-3.650e+02;SOR=2.115;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1155,84,0
1	176845528	rs2076341	C	T	2663.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-1.233e+03;SOR=1.264;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2692,199,0
1	176845871	rs372758922	G	A	580.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.146;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.73;ReadPosRankSum=-1.073;SB=0.00;SOR=0.892;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,17:31:99:609,0,429
1	176857347	rs2072935	A	G	1478.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-8.140e+02;SOR=1.022;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1507,108,0
1	176863836	rs2281180	G	C	1550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-8.120e+02;SOR=0.883;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1579,114,0
1	176863867	rs2228956	T	C	1270.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-8.120e+02;SOR=0.883;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:96:1299,96,0
1	176913215	.	AT	A	262.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;RPA=15,14;RU=T;ReadPosRankSum=1.097;SB=-3.919e+01;SOR=2.494;STR;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,15:19:4:224,0,4
1	177199323	rs3176442	C	T	1549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-7.910e+02;SOR=1.287;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1578,114,0
1	177247854	rs3176443	C	G	886.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.021;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-0.425;SB=-1.980e+02;SOR=0.624;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,30:66:99:915,0,1040
1	177906657	rs6676302	G	A	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.008;HaplotypeScore=2.7651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-1.946;SB=-3.040e+02;SOR=1.077;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,27:62:99:718,0,934
1	177908852	rs943762	C	T	1302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.350;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=7.087;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.550;SB=-7.660e+02;SOR=0.505;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,47:88:99:1331,0,997
1	177915474	rs842192	A	C	1362.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-5.350e+02;SOR=1.666;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1391,102,0
1	177921322	.	C	T	735.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.768;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.386;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-0.739;SB=-3.070e+02;SOR=1.144;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,26:53:99:764,0,790
1	177921434	rs4652282	T	A	809.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-2.311e+02;SOR=2.303;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:838,63,0
1	177923440	rs12129817	T	G	1395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.283;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=-1.711;SB=-8.080e+02;SOR=0.770;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,52:88:99:1424,0,930
1	177928265	rs74338226	G	A	433.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.357;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.288;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-0.577;SB=-8.200e+01;SOR=1.688;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,16:38:99:462,0,550
1	177929554	rs10913472	C	T	2408.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-1.306e+03;SOR=1.003;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2437,184,0
1	177929987	rs12040910	T	C	3300.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-1.273e+03;SOR=1.565;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3329,247,0
1	177930096	rs867275	T	C	3960.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-2.059e+03;SOR=1.196;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3989,301,0
1	177930894	rs945641	C	T	1363.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-2.231e+02;SOR=3.312;VQSLOD=7.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1392,108,0
1	177935275	rs1415085	A	G	368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-1.105e+02;SOR=1.981;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:397,30,0
1	178380859	rs61736916	G	A	1255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.086;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=-1.762;SB=-7.880e+02;SOR=0.782;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:81,53:134:99:1284,0,2249
1	178408780	rs16852807	C	T	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-0.441;SB=-9.000e+01;SOR=0.693;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:258,0,164
1	178442031	rs6688185	C	T	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=0.327;SB=0.00;SOR=0.793;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:335,0,265
1	178484834	rs10798611	A	G	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.181;SB=-1.090e+02;SOR=0.818;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:304,0,167
1	178490309	rs202003188	T	G	635.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.643;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-1.144;SB=-1.300e+02;SOR=0.838;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,21:48:99:664,0,776
1	178490667	.	A	G	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.220;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.59;ReadPosRankSum=1.322;SB=-2.020e+02;SOR=0.474;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:431,0,493
1	178491680	rs3813637	C	G	851.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.146;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=1.116;SB=-2.710e+02;SOR=0.793;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:880,0,717
1	178492447	rs7527160	T	A	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=0.217;SB=-1.360e+02;SOR=0.399;VQSLOD=7.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,10:23:99:247,0,364
1	178494428	rs6664493	C	T	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=0.269;SB=-1.765e+00;SOR=2.179;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:210,0,137
1	178499068	rs6675811	T	A	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=1.806;SB=-1.350e+02;SOR=1.071;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,13:33:99:333,0,538
1	178513895	rs10798615	T	G	1142.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=-2.890e+02;SOR=2.517;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1171,84,0
1	178514165	rs12141152	C	T	756.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=0.890;SB=-4.370e+02;SOR=0.826;VQSLOD=8.73;culprit=SOR	GT:AD:DP:GQ:PL	0/1:40,30:70:99:785,0,1153
1	178514203	rs12044868	C	A	889.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.288;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.429;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.443;SB=-5.510e+02;SOR=0.350;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,37:68:99:918,0,751
1	178514560	.	A	AT	3191.02	PASS	AC=2;AF=1.00;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;RPA=4,5;RU=T;SB=-1.426e+03;SOR=0.947;STR;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:100:99:3229,285,0
1	178515135	rs4650992	A	T	903.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.76;SB=-1.871e+02;SOR=2.670;VQSLOD=4.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:932,72,0
1	178515187	rs4650993	A	G	465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-2.001e+02;SOR=1.473;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:494,36,0
1	178524596	rs4354501	T	C	296.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-1.583e+02;SOR=1.085;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:325,24,0
1	178646748	rs2811318	A	T	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=1.340;SB=-2.010e+02;SOR=0.836;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:333,0,172
1	178646752	rs2773075	A	C	556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.51;SB=-4.070e+02;SOR=0.784;VQSLOD=5.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:42:585,42,0
1	178745798	rs35196749	CT	C	297.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DB;DP=57;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.62;RPA=14,13;RU=T;ReadPosRankSum=0.722;SB=-6.600e+01;SOR=1.179;STR;VQSLOD=6.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,22:57:99:335,0,658
1	178780650	rs12131426	A	G	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.284;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.858;SB=-1.766e+00;SOR=0.892;VQSLOD=8.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:159,0,305
1	178820159	rs1544124	C	A	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-1.339;SB=0.00;SOR=0.836;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:227,0,163
1	178854162	rs6425503	C	T	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.557;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=1.503;SB=-5.700e+01;SOR=0.663;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:231,0,390
1	179019238	rs11808217	C	G	238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=1.036;SB=0.00;SOR=0.412;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:267,0,441
1	179019576	rs3766631	C	G	633.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.073;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.369;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-1.022;SB=-1.580e+02;SOR=0.450;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,23:47:99:662,0,708
1	179041011	rs3820163	A	G	456.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=-1.058;SB=-2.200e+02;SOR=0.859;VQSLOD=8.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,22:58:99:485,0,1017
1	179041398	rs2025584	A	G	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.235;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-1.226;SB=0.00;SOR=0.602;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:292,0,349
1	179051300	rs2296377	T	C	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=0.221;SB=-7.300e+01;SOR=1.022;VQSLOD=10.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:95:266,0,95
1	179052006	rs2274227	G	T	1151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.602;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.896;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=1.400;SB=-5.540e+02;SOR=0.542;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,40:74:99:1180,0,1024
1	179067071	rs10913690	C	A	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.21;ReadPosRankSum=-0.141;SB=0.00;SOR=0.368;VQSLOD=10.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:122,0,283
1	179080115	rs376797144	CTT	C	277.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DB;DP=36;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.08;RPA=20,18;RU=T;ReadPosRankSum=0.757;SB=-1.822e+00;SOR=2.494;STR;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:36:94:315,0,94
1	179087934	rs2171959	T	C	394.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=0.664;SB=-1.000e+02;SOR=0.534;VQSLOD=8.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,16:46:99:423,0,861
1	179089213	rs1858551	C	T	484.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.694;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=0.554;SB=-6.701e+01;SOR=0.693;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,16:26:99:513,0,302
1	179089218	.	C	T	613.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.861;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.46;ReadPosRankSum=-0.409;SB=-7.000e+01;SOR=0.784;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,19:31:99:642,0,321
1	179089475	rs9726961	C	G	486.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=2.058;SB=-2.302e+01;SOR=1.911;VQSLOD=6.21;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:24,16:40:99:515,0,692
1	179089491	rs9728480	A	C	405.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.892;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=8.744;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=2.544;SB=-1.352e-01;SOR=3.126;VQSLOD=5.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,13:35:99:434,0,593
1	179089518	rs9727252	C	G	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.404;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-0.616;SB=0.00;SOR=0.616;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:372,0,413
1	179292442	rs2902277	G	A	353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.085;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=0.000;SB=-7.100e+01;SOR=0.693;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:382,0,206
1	179304892	rs1034269	T	C	335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.044;SB=-2.601e+01;SOR=1.022;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:364,0,448
1	179308803	rs3753524	G	A	272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.545;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.883;SB=-3.000e+01;SOR=0.732;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:301,0,433
1	179310439	rs7547733	C	T	1187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.602;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.798;HaplotypeScore=2.9339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=1.759;SB=-5.770e+02;SOR=0.557;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,48:98:99:1216,0,1219
1	179312102	rs4651024	T	C	3312.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-1.973e+03;SOR=0.711;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3341,247,0
1	179312249	rs11350945	AT	A	1515.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;RPA=2,1;RU=T;SB=-1.395e+02;SOR=4.351;STR;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:38:99:1553,111,0
1	179317895	rs200924427	ATGTGTGTGTGTGTGTGTGTGTGTGTG	A	4621.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;RPA=27,14;RU=TG;SB=-8.425e+02;SOR=2.712;STR;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:24:51:4659,51,0
1	179319580	rs3753527	T	C	2982.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-1.144e+03;SOR=1.770;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3011,217,0
1	179320665	rs13306732	A	G	1413.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-4.940e+02;SOR=1.814;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1442,102,0
1	179335499	.	C	CT	625.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.199;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQ0=0;MQRankSum=0.521;POSITIVE_TRAIN_SITE;QD=18.96;RPA=15,16;RU=T;ReadPosRankSum=-0.717;SB=-5.779e+01;SOR=1.148;STR;VQSLOD=4.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,29:35:26:595,26,0
1	179339262	rs16854009	C	G	392.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.760;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.41;ReadPosRankSum=0.629;SB=-9.100e+01;SOR=0.693;VQSLOD=8.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,17:53:99:421,0,974
1	179339334	rs6666358	G	A	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.06;ReadPosRankSum=-0.898;SB=0.00;SOR=1.609;VQSLOD=10.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:315,0,123
1	179347832	rs10798674	T	C	4229.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-2.752e+03;SOR=0.766;VQSLOD=5.83;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4258,301,0
1	179352736	rs4077551	T	C	553.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.473;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.255;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-0.478;SB=-3.120e+02;SOR=0.283;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,20:49:99:582,0,886
1	179352925	rs4077552	T	C	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-1.437;SB=0.00;SOR=0.693;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:174,0,163
1	179354304	rs7541905	A	G	1332.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;SB=-1.225e+02;SOR=4.294;VQSLOD=4.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1361,99,0
1	179364372	rs12405133	G	C	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.114;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-1.255;SB=-2.330e+02;SOR=0.834;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,28:59:99:610,0,894
1	179364391	rs61173288	A	G	768.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.817;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.467;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-0.854;SB=-2.620e+02;SOR=0.264;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,28:44:99:797,0,461
1	179380472	rs5779024	GT	G	615.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;RPA=8,7;RU=T;ReadPosRankSum=-1.950;SB=-1.420e+02;SOR=0.836;STR;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,29:57:99:653,0,526
1	179380519	rs10798676	G	T	459.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.095;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=-0.975;SB=-1.050e+02;SOR=0.648;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,16:28:99:488,0,343
1	179398563	rs4652382	C	G	480.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=0.00;SOR=5.421;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:509,42,0
1	179398976	rs61820978	G	C	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-1.221;SB=0.00;SOR=0.693;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:153,0,127
1	179401503	rs12097041	G	A	477.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.713;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.544;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.25;MQ0=0;MQRankSum=-0.826;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-0.024;SB=-2.420e+02;SOR=0.971;VQSLOD=0.058;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,19:44:99:506,0,618
1	179401564	rs10706073	CT	C	715.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.802;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;MQRankSum=0.359;POSITIVE_TRAIN_SITE;QD=22.37;RPA=12,11;RU=T;ReadPosRankSum=-0.217;SB=-3.480e+02;SOR=0.379;STR;VQSLOD=3.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,31:35:67:753,67,0
1	179416878	rs7521291	C	T	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.250;SB=-3.300e+01;SOR=0.446;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:196,0,279
1	179417033	.	T	C	668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.058;SB=-3.430e+02;SOR=0.647;VQSLOD=7.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:48,29:77:99:697,0,1224
1	179418353	rs184455170	G	A	840.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.182;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=6.965;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=-1.019;SB=-2.870e+02;SOR=1.309;VQSLOD=6.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,38:88:99:869,0,1220
1	179418354	rs188994420	G	C	852.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.128;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=-0.996;SB=-4.670e+02;SOR=1.179;VQSLOD=7.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:48,38:86:99:881,0,1256
1	179426175	rs137970202	CCTGGT	C	379.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=-0.448;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-0.002;SB=-1.510e+02;SOR=0.527;VQSLOD=3.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:14:99:417,0,543
1	179452194	rs6668035	C	T	402.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-3.577e+01;SOR=3.767;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:431,33,0
1	179452275	rs10494520	G	A	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-0.519;SB=-2.040e+02;SOR=0.714;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,20:37:99:495,0,468
1	179452522	rs12407885	G	C	413.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-4.276e+01;SOR=3.611;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:442,33,0
1	179462149	rs7549194	A	G	1047.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-4.276e+01;SOR=5.283;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1076,81,0
1	179502761	rs139594560	CTT	C	238.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=0.696;QD=17.05;RPA=18,16;RU=T;ReadPosRankSum=1.013;SB=0.00;SOR=2.303;STR;VQSLOD=1.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,11:14:6:275,0,6
1	179503806	rs6425572	G	A	405.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.555;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-1.422;SB=-2.770e+02;SOR=0.180;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,19:33:99:434,0,359
1	179504025	rs141228272	AAAG	A	247.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DB;DP=24;ExcessHet=3.0103;FS=4.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;RPA=4,3;RU=AAG;ReadPosRankSum=1.941;SB=-1.090e+02;SOR=0.552;STR;VQSLOD=7.07;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,7:24:99:285,0,708
1	179504043	rs6658180	C	G	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.095;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.186;HaplotypeScore=5.7990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-0.611;SB=-1.230e+02;SOR=0.814;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:333,0,492
1	179504130	rs6425574	G	A	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.874;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=0.162;SB=-9.100e+01;SOR=0.714;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,9:26:99:263,0,438
1	179520151	rs1410590	C	T	857.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=0.00;SOR=6.273;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:886,66,0
1	179520254	rs1410591	C	G	1442.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.868;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.342;SB=-5.700e+02;SOR=0.570;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,51:90:99:1471,0,1014
1	179520506	rs1410592	G	A	978.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.635;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.456;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-0.290;SB=-5.110e+02;SOR=0.347;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,36:81:99:1007,0,1285
1	179521932	rs2274626	G	T	1586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.016;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=7.146;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=-0.292;SB=-5.010e+02;SOR=1.489;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,53:95:99:1615,0,1105
1	179544898	rs1079292	T	C	610.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.06;SB=-8.097e+01;SOR=3.383;VQSLOD=5.96;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,17:17:48:639,48,0
1	179556306	rs3926126	T	C	669.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-4.030e+02;SOR=0.693;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:698,54,0
1	179557130	rs35777003	T	A	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=-0.169;SB=-1.360e+02;SOR=0.877;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:57:260,0,57
1	179561645	rs4652418	A	C	629.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-3.876e+01;SOR=4.294;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:658,48,0
1	179561683	rs4652419	A	T	1038.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3164;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-3.010e+02;SOR=2.235;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1067,78,0
1	179562143	rs4652420	G	A	676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-2.261e+02;SOR=1.931;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:705,51,0
1	179562740	rs61310274	G	C	1498.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=2.283;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-0.119;SB=-8.190e+02;SOR=0.476;VQSLOD=7.26;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,56:127:99:1527,0,1837
1	179604864	rs4628468	C	T	1530.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-6.350e+02;SOR=1.565;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1559,114,0
1	179605058	rs4483370	G	A	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=-0.745;SB=0.00;SOR=0.269;VQSLOD=9.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:118,0,277
1	179609589	rs16854429	G	T	1259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.010;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-0.401;SB=-7.300e+02;SOR=0.791;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:66,53:119:99:1288,0,1812
1	179620253	rs6682666	G	A	1484.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.008;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.995;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=-1.741;SB=-4.600e+02;SOR=0.511;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,52:86:99:1513,0,987
1	179852074	rs1281378	T	C	3195.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-1.526e+03;SOR=1.284;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3224,247,0
1	179852552	rs605807	T	G	867.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-7.197e+01;SOR=4.003;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:896,66,0
1	179858333	rs1300068	C	T	994.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=0.00;SOR=6.666;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1023,81,0
1	179858444	rs2245425	G	A	2496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-1.257e+03;SOR=1.003;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2525,187,0
1	179876988	rs609521	C	G	608.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.67;SB=-2.960e+02;SOR=1.329;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:637,48,0
1	179887125	rs627897	G	A	2602.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-1.183e+03;SOR=1.252;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2631,193,0
1	179938305	rs539324	G	C	561.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.21;SB=-2.800e+02;SOR=1.179;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:590,45,0
1	179983665	rs2501607	G	A	1239.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-4.320e+02;SOR=1.981;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1268,93,0
1	179989742	rs2477120	G	C	3762.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.84;SB=-1.840e+03;SOR=1.077;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3791,277,0
1	179991688	rs2477116	A	T	681.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;SB=0.00;SOR=6.091;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:710,57,0
1	179992076	rs2477117	A	G	1085.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=-3.876e+01;SOR=5.353;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1114,84,0
1	179993793	rs4622030	T	C	416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=-4.276e+01;SOR=3.611;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:36:445,36,0
1	180010702	rs4652461	T	C	715.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-2.977e+01;SOR=4.712;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:744,57,0
1	180022343	rs9425854	T	G	2627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-9.630e+02;SOR=1.995;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2656,196,0
1	180022760	rs2040083	A	T	437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=0.00;SOR=5.136;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:466,36,0
1	180059692	rs10798728	A	G	54.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9344;MLEAC=1;MLEAF=0.500;MQ=44.54;MQ0=0;MQRankSum=0.173;QD=3.42;ReadPosRankSum=-1.656;SB=0.00;SOR=0.495;VQSLOD=1.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,7:16:83:83,0,255
1	180059736	rs67852047	GACATACCT	G	3648.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-1.530e+02;SOR=4.804;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:3686,102,0
1	180059811	rs10798729	A	C	3051.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.143;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8703;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=3.957;POSITIVE_TRAIN_SITE;QD=31.79;ReadPosRankSum=1.758;SB=-8.470e+02;SOR=0.693;VQSLOD=2.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,94:96:99:3080,226,0
1	180080115	rs3767202	T	G	1623.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-4.600e+02;SOR=2.303;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1652,120,0
1	180144291	.	C	CA	634.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQ0=0;MQRankSum=0.498;POSITIVE_TRAIN_SITE;QD=18.67;RPA=13,14;RU=A;ReadPosRankSum=-0.925;SB=-1.925e+02;SOR=0.671;STR;VQSLOD=3.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,29:36:6:671,0,6
1	180145088	rs2298206	A	G	1436.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-7.560e+02;SOR=0.829;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1465,108,0
1	180155376	rs2298207	C	G	1132.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.33;SB=-1.981e+02;SOR=3.193;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1161,84,0
1	180155382	rs3216058	AG	A	1312.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.27;RPA=2,1;RU=G;SB=-8.697e+01;SOR=4.548;STR;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:31:90:1350,90,0
1	180180669	rs164980	A	G	575.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.627;SB=-3.070e+02;SOR=0.846;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:604,0,600
1	180240752	rs3845397	C	T	1070.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.46;SB=-1.503e+02;SOR=3.545;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1099,84,0
1	180243524	rs7536561	A	G	3436.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-2.115e+03;SOR=0.731;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3465,250,0
1	180257692	rs2254465	A	C	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-8.197e+01;SOR=3.500;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:628,51,0
1	180757056	rs3761904	A	G	548.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.854;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=-1.645;SB=-1.000e+02;SOR=1.358;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:577,0,330
1	180757117	rs68143054	G	GT	388.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=0.00;SOR=4.615;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:10:27:426,27,0
1	180803922	rs2271669	T	C	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.238;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.337;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=0.846;SB=-1.765e+00;SOR=2.694;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,12:19:99:441,0,181
1	180849494	rs10914123	T	C	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.163;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-1.157;SB=-3.777e+01;SOR=0.105;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:231,0,375
1	180885430	rs10732273	T	C	3870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-2.187e+03;SOR=0.710;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,120:122:99:3899,298,0
1	180897521	rs7544551	C	T	843.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-3.200e+02;SOR=1.863;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:872,63,0
1	180897792	rs35197779	ATGC	A	363.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;RPA=4,3;RU=TGC;SB=0.00;SOR=4.174;STR;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:10:21:401,21,0
1	180905352	rs3795505	C	T	1369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.706;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-1.828;SB=-6.850e+02;SOR=0.738;VQSLOD=7.94;culprit=DP	GT:AD:DP:GQ:PL	0/1:89,50:139:99:1398,0,2462
1	180905448	rs3795504	G	T	1815.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.210;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=8.344;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=1.196;SB=-1.140e+03;SOR=0.297;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,68:122:99:1844,0,1562
1	180913456	rs41268448	G	A	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=8.737;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.421;SB=-1.500e+02;SOR=0.048;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:31:99:359,0,579
1	180913597	rs2331995	A	G	3010.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-1.973e+03;SOR=0.793;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3039,217,0
1	180913874	rs944234	C	T	300.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-8.097e+01;SOR=2.303;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:329,24,0
1	180919255	rs2297185	C	T	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.183;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-0.871;SB=0.00;SOR=0.446;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:157,0,238
1	180953853	rs3747957	A	G	788.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.906;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.633;SB=-4.000e+02;SOR=0.919;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,32:74:99:817,0,1179
1	180957130	rs7528255	C	A	555.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=0.00;SOR=5.549;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:584,45,0
1	180962282	rs1411478	A	G	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=-0.243;SB=0.00;SOR=1.445;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:278,0,121
1	180991665	rs12565758	C	G	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=0.702;SB=-2.130e+02;SOR=0.836;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,13:19:99:325,0,131
1	181024528	rs75073791	G	A	1132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.390;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.467;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=0.621;SB=-3.170e+02;SOR=1.151;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,40:73:99:1161,0,975
1	181057874	rs6425663	T	G	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.24;ReadPosRankSum=0.184;SB=-6.000e+01;SOR=0.859;VQSLOD=9.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,8:24:99:178,0,458
1	181058272	rs113028155	G	T	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-0.692;SB=-6.200e+01;SOR=1.022;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:192,0,212
1	181680082	rs17743547	G	A	1633.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.446;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=1.530;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-0.078;SB=-8.350e+02;SOR=0.879;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,64:113:99:1662,0,1332
1	181684605	rs12407563	A	G	2294.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-7.430e+02;SOR=2.082;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2323,172,0
1	181685432	.	T	TA	157.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.86;RPA=16,17;RU=A;ReadPosRankSum=0.928;SB=-7.894e+00;SOR=1.061;STR;VQSLOD=8.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,10:28:99:195,0,162
1	181686216	rs7540850	T	C	4121.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-1.555e+03;SOR=1.807;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4150,307,0
1	181687348	rs139092974	T	C	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=-0.925;SB=-1.410e+02;SOR=0.593;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:373,0,268
1	181693319	rs59778354	C	T	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.218;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=-0.413;SB=-4.176e+01;SOR=0.105;VQSLOD=7.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,8:19:99:221,0,394
1	181714184	rs16858051	T	C	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.831;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=0.292;SB=0.00;SOR=1.609;VQSLOD=10.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:324,0,120
1	181719679	rs704332	C	T	807.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.597;SB=-4.760e+02;SOR=0.756;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,31:69:99:836,0,867
1	181721265	rs2293991	C	T	1119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.916;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.769;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-1.431;SB=-6.980e+02;SOR=0.609;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,43:82:99:1148,0,1098
1	181725110	rs4652678	T	C	604.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.145;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=1.970;SB=-3.410e+02;SOR=0.789;VQSLOD=7.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,24:45:99:633,0,529
1	181726413	rs704330	G	A	710.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-8.097e+01;SOR=3.912;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:739,57,0
1	181727030	rs12564606	A	T	1953.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.763;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=3.819;HaplotypeScore=3.5799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.803;SB=-9.780e+02;SOR=1.011;VQSLOD=7.15;culprit=DP	GT:AD:DP:GQ:PL	0/1:80,70:150:99:1982,0,2113
1	181727273	rs704329	G	A	1478.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.391;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.893;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=-0.827;SB=-4.090e+02;SOR=0.582;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,53:102:99:1507,0,1439
1	181731667	.	T	TC	526.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DP=49;ExcessHet=3.0103;FS=3.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.75;RPA=1,2;RU=C;ReadPosRankSum=0.284;SB=-6.400e+01;SOR=1.306;STR;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,17:49:99:564,0,1002
1	181732695	rs72735265	A	G	930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.124;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-1.479;SB=-4.370e+02;SOR=0.606;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,33:68:99:959,0,1059
1	181741301	rs199930	C	T	1345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=5.426;HaplotypeScore=2.9926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=-0.882;SB=-6.900e+02;SOR=0.865;VQSLOD=7.48;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,53:132:99:1374,0,2026
1	181745580	rs199932	G	A	993.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.854;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.070;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-0.776;SB=-3.410e+02;SOR=0.509;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,37:68:99:1022,0,936
1	181752714	rs74489861	C	T	285.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=2.026;SB=0.00;SOR=1.112;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:314,0,193
1	181752735	rs74342664	C	T	469.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=0.447;SB=-2.601e+01;SOR=1.329;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:498,0,252
1	181752769	.	A	AT	279.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;DP=45;ExcessHet=3.0103;FS=5.314;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-1.077;POSITIVE_TRAIN_SITE;QD=6.51;RPA=14,15;RU=T;ReadPosRankSum=-0.967;SB=-5.200e+01;SOR=1.802;STR;VQSLOD=0.262;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,19:45:99:317,0,428
1	181752923	rs36163765	AAGCTT	A	4311.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.66;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;RPA=2,1;RU=AGCTT;SB=-1.510e+03;SOR=1.493;STR;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:65:99:4349,175,0
1	181753030	rs546191	T	C	615.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=0.00;SOR=5.670;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:644,48,0
1	181759443	rs74127864	T	A	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.670;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=22.4224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=1.258;SB=-3.677e+01;SOR=0.086;VQSLOD=3.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:31:99:344,0,629
1	181759443	.	T	TA	762.73	PASS	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.30;RPA=2,3;RU=A;SB=-3.577e+01;SOR=5.353;STR;VQSLOD=3.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:31:86:800,86,0
1	181767860	rs200469194	A	G	936.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.023;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.058;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.35;ReadPosRankSum=0.061;SB=-4.480e+02;SOR=0.944;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,31:54:99:965,0,667
1	181768186	rs2280869	T	C	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=-0.608;SB=0.00;SOR=1.085;VQSLOD=10.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:198,0,126
1	182419624	rs12092257	T	C	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.590;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-0.285;SB=-7.300e+01;SOR=0.582;VQSLOD=10.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:254,0,168
1	182427355	rs2765278	G	A	411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.346;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.160;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-1.108;SB=-7.197e+01;SOR=0.105;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:440,0,418
1	182427659	rs1822271	C	T	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=0.728;SB=0.00;SOR=1.270;VQSLOD=10.05;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:227,0,108
1	182429295	rs10572829	CTG	C	658.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;DB;DP=40;ExcessHet=3.0103;FS=9.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.71;RPA=12,11;RU=TG;ReadPosRankSum=0.597;SB=-3.000e+01;SOR=3.160;STR;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,19:40:99:696,0,354
1	182429728	rs266508	T	C	813.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.790;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-0.933;SB=-3.030e+02;SOR=0.788;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,31:60:99:842,0,858
1	182441446	rs569654	G	A	979.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.636;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=0.040;SB=-2.390e+02;SOR=0.564;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,35:64:99:1008,0,843
1	182441835	rs1968710	C	A	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.648;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=1.243;SB=-2.210e+02;SOR=0.693;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,22:56:99:560,0,935
1	182443014	rs647224	G	C	1604.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.419;HaplotypeScore=3.3196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-0.445;SB=-9.390e+02;SOR=0.556;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,61:125:99:1633,0,1920
1	182443462	rs649437	T	C	1244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.719;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-1.495;SB=-6.520e+02;SOR=0.507;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,46:93:99:1273,0,1369
1	182457255	.	G	T	394.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.654;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-1.150;SB=-1.210e+02;SOR=0.788;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,16:41:99:423,0,661
1	182491107	rs607269	A	C	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.174;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.580;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=-0.147;SB=-2.657e-01;SOR=1.981;VQSLOD=6.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,8:29:99:249,0,634
1	182501933	rs266534	C	A	1352.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.357;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.789;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=1.332;SB=-8.140e+02;SOR=0.598;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,52:90:99:1381,0,974
1	182502033	rs266535	G	T	674.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.290;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.956;SB=-2.470e+02;SOR=1.189;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,24:58:99:703,0,938
1	182509269	rs266531	G	A	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.883;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.57;ReadPosRankSum=0.384;SB=-2.501e+01;SOR=0.693;VQSLOD=8.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,8:31:99:201,0,768
1	182520362	rs10606048	TCA	T	1259.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;DB;DP=49;ExcessHet=3.0103;FS=6.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.80;RPA=2,1;RU=CA;ReadPosRankSum=2.626;SB=-3.670e+02;SOR=1.781;STR;VQSLOD=5.35;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,27:49:99:1297,0,936
1	182522552	rs266544	C	T	1065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.839;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.766;SB=-4.090e+02;SOR=0.933;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,40:85:99:1094,0,1151
1	182522762	rs266545	C	A	968.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.907;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.327;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.049;SB=-3.320e+02;SOR=1.179;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,36:63:99:997,0,797
1	182523591	rs266547	A	C	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=1.118;SB=-3.501e+01;SOR=0.859;VQSLOD=10.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:234,0,168
1	182549019	rs533259	A	G	3476.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-1.757e+03;SOR=0.970;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3505,262,0
1	182550200	rs501286	A	G	512.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-4.176e+01;SOR=4.047;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:541,45,0
1	182551337	rs627928	A	C	1365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.044;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.732;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-0.247;SB=-6.930e+02;SOR=0.994;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,49:91:99:1394,0,1027
1	182554557	rs486907	C	T	1784.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=1.363;HaplotypeScore=3.9149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.382;SB=-8.860e+02;SOR=0.881;VQSLOD=7.87;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,63:137:99:1813,0,2015
1	182569626	rs1144566	T	C	1166.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-7.010e+02;SOR=0.859;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1195,90,0
1	182571003	rs610367	C	T	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=1.014;SB=-5.600e+01;SOR=0.804;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,11:29:99:297,0,543
1	182571277	rs569790	C	T	1032.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.868;HaplotypeScore=3.4960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=1.245;SB=-6.220e+02;SOR=0.539;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,39:78:99:1061,0,1057
1	182573227	rs509476	T	C	341.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.48;SB=-2.061e+02;SOR=1.022;VQSLOD=3.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:370,27,0
1	182778367	rs971040	G	A	706.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-1.781e+02;SOR=2.200;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:735,54,0
1	182781259	rs77446110	T	G	1478.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.315;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.743;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.862;SB=-8.210e+02;SOR=0.618;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,60:106:99:1507,0,1116
1	182784022	rs2275171	T	C	1451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.567;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=2.716;SB=-4.510e+02;SOR=0.750;VQSLOD=8.59;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1480,0,1223
1	182827797	rs2282264	T	G	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.600;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=6.685;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=0.833;SB=-3.230e+02;SOR=0.124;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,21:51:99:541,0,967
1	182835662	rs142698184	C	T	660.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.087;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-0.026;SB=-3.000e+02;SOR=1.029;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,27:54:99:689,0,700
1	182848368	rs2275176	T	C	455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.914;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-0.017;SB=-5.600e+01;SOR=0.576;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:484,0,581
1	182850727	rs6677840	T	C	2233.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-9.860e+02;SOR=1.230;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2262,166,0
1	182854017	rs3130492	G	A	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.502;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.862;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=1.079;SB=-5.900e+01;SOR=1.565;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:453,0,430
1	182909488	rs116513797	A	G	1224.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.167;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.081;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.609;SB=-3.960e+02;SOR=1.093;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,41:81:99:1253,0,990
1	182993025	rs10911194	C	T	1056.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.847;HaplotypeScore=1.4450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.803;SB=-4.920e+02;SOR=0.489;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,39:87:99:1085,0,1339
1	182993381	rs111302764	C	G	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-1.355;SB=-1.765e+00;SOR=1.371;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:164,0,218
1	183072590	rs2296288	T	C	1938.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=3.081;HaplotypeScore=3.6979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-0.033;SB=-9.640e+02;SOR=0.888;VQSLOD=8.07;culprit=DP	GT:AD:DP:GQ:PL	0/1:64,72:136:99:1967,0,1691
1	183072908	rs10797835	T	C	569.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.149;SB=-2.020e+02;SOR=0.836;VQSLOD=9.40;culprit=SOR	GT:AD:DP:GQ:PL	0/1:31,21:52:99:598,0,880
1	183077296	rs66464853	A	AG	206.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.411;SB=-1.765e+00;SOR=0.963;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:244,0,452
1	183077615	rs3765521	C	T	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.973;SB=-9.732e-01;SOR=2.584;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:191,0,174
1	183077618	rs3765522	C	T	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=1.248;SB=-9.732e-01;SOR=2.636;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:168,0,144
1	183079509	rs2296291	C	T	489.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.832;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=3.636;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=0.033;SB=-1.270e+02;SOR=0.233;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,19:46:99:518,0,814
1	183084607	rs3736888	A	G	903.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.705;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=-0.643;SB=-1.760e+02;SOR=0.929;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,30:55:99:932,0,746
1	183084608	rs2027082	C	A	857.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.321;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-0.395;SB=-1.730e+02;SOR=1.127;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:56:99:886,0,726
1	183085568	rs6424887	C	T	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.606;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.376;SB=-4.176e+01;SOR=0.141;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:226,0,283
1	183085696	rs6424888	A	G	1026.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-1.141;SB=-5.650e+02;SOR=0.744;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,40:62:99:1055,0,621
1	183085755	rs20563	A	G	1079.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.948;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=2.266;SB=-7.660e+02;SOR=0.634;VQSLOD=9.15;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,44:75:99:1108,0,816
1	183086757	rs2296292	A	C	2228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.455;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-1.322;SB=-1.159e+03;SOR=0.662;VQSLOD=7.27;culprit=DP	GT:AD:DP:GQ:PL	0/1:94,84:178:99:2257,0,2866
1	183090751	rs2333621	A	G	457.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.996;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-0.934;SB=-3.500e+01;SOR=0.693;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:486,0,460
1	183093875	.	T	C	1501.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;DP=138;Dels=0.00;ExcessHet=3.0103;FS=7.571;HaplotypeScore=3.6201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-0.967;SB=-7.460e+02;SOR=0.908;VQSLOD=4.43;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,61:138:99:1530,0,2038
1	183094418	.	A	AC	279.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.65;RPA=1,2;RU=C;ReadPosRankSum=-0.679;SB=0.00;SOR=0.818;STR;VQSLOD=10.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:317,0,271
1	183094547	rs20558	T	C	1942.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.299;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-0.318;SB=-6.510e+02;SOR=0.637;VQSLOD=8.58;culprit=DP	GT:AD:DP:GQ:PL	0/1:70,74:144:99:1971,0,1917
1	183095234	rs1886501	A	G	648.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.370;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.1010;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=1.241;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=-0.096;SB=-1.320e+02;SOR=0.669;VQSLOD=2.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,26:64:99:677,0,1043
1	183095477	rs2296293	G	A	833.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.019;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.137;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-0.255;SB=-2.440e+02;SOR=0.280;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,31:55:99:862,0,730
1	183096582	rs112550932	T	C	754.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.439;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.307;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=1.895;SB=-2.100e+02;SOR=0.423;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,27:57:99:783,0,880
1	183096634	rs1413390	G	A	540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.525;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.085;SB=-6.700e+01;SOR=1.220;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:569,0,332
1	183096668	rs1413389	C	T	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-0.185;SB=0.00;SOR=0.693;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:215,0,231
1	183097956	rs66470465	G	GTTA	702.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DB;DP=42;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.02;RPA=1,2;RU=TTA;ReadPosRankSum=1.494;SB=-1.570e+02;SOR=1.179;STR;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,14:42:99:740,0,1292
1	183098001	rs10797851	A	G	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.653;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=0.312;SB=-2.501e+01;SOR=0.976;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,9:25:99:262,0,470
1	183099701	rs2296300	G	A	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.357;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=1.310;SB=-4.176e+01;SOR=0.275;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:279,0,239
1	183100551	.	C	T	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.927;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.80;ReadPosRankSum=0.411;SB=-2.657e-01;SOR=3.180;VQSLOD=4.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:192,0,365
1	183100555	rs2333620	T	C	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=6.039;HaplotypeScore=4.8658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.69;ReadPosRankSum=0.040;SB=-1.352e-01;SOR=3.383;VQSLOD=6.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:20:99:142,0,337
1	183100563	rs4997370	G	T	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=8.929;HaplotypeScore=4.8658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=0.483;SB=-1.352e-01;SOR=3.126;VQSLOD=5.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:185,0,333
1	183100596	.	A	G	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=-1.834;QD=6.38;ReadPosRankSum=0.319;SB=-1.767e+00;SOR=0.836;VQSLOD=1.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:92:92,0,239
1	183100598	.	T	G	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=-1.834;QD=6.08;ReadPosRankSum=0.319;SB=-1.765e+00;SOR=0.836;VQSLOD=1.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:89:89,0,249
1	183101444	rs12071514	A	C	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-1.290;SB=-1.765e+00;SOR=1.112;VQSLOD=7.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:124,0,215
1	183101471	rs12061219	G	A	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.925;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=5.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.21;ReadPosRankSum=-0.641;SB=-2.657e-01;SOR=2.376;VQSLOD=6.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,9:28:99:258,0,555
1	183101582	rs61749262	A	G	887.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.827;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.400;SB=-5.500e+02;SOR=0.595;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,38:76:99:916,0,1008
1	183101686	rs12095664	G	A	437.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.299;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-0.298;SB=-1.220e+02;SOR=0.512;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,18:44:99:466,0,841
1	183102468	rs115782217	A	G	39.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.584;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.34;ReadPosRankSum=0.252;SB=-5.150e-01;SOR=1.022;VQSLOD=7.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:68:68,0,410
1	183104013	.	G	A	584.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.316;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.18;ReadPosRankSum=-0.114;SB=-2.860e+02;SOR=0.724;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,23:48:99:613,0,644
1	183104340	rs35182436	AT	A	99.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.16;RPA=11,10;RU=T;ReadPosRankSum=0.245;SB=-3.400e+01;SOR=0.859;STR;VQSLOD=8.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,8:28:99:137,0,403
1	183105324	rs2296297	C	T	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=-0.703;SB=0.00;SOR=1.981;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:86:313,0,86
1	183105534	rs20560	T	C	975.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.118;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=8.922;HaplotypeScore=6.4024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=-0.118;SB=-4.870e+02;SOR=0.817;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,37:64:99:1004,0,727
1	183106739	rs10797854	G	A	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.007;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.566;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.11;ReadPosRankSum=-0.735;SB=-5.150e-01;SOR=1.312;VQSLOD=6.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,6:25:99:156,0,673
1	183111959	rs199548614	CAG	C	1111.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.348;DB;DP=31;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=61.04;MQ0=0;MQRankSum=1.014;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=0.189;SB=-2.371e+02;SOR=0.160;VQSLOD=0.056;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,24:31:99:1149,0,329
1	183155482	rs684527	C	A	555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.874;SB=-6.000e+01;SOR=0.643;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:584,0,624
1	183155700	rs6678888	C	A	1193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.604;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-1.555;SB=-4.720e+02;SOR=0.941;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,49:112:99:1222,0,1609
1	183155715	rs60707856	CT	C	1255.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DB;DP=95;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-0.865;SB=-3.060e+02;SOR=1.030;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,38:95:99:1293,0,2386
1	183155717	rs61418038	C	A	1056.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.561;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.963;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-0.615;SB=-2.850e+02;SOR=0.997;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,38:92:99:1085,0,1395
1	183155778	rs6703054	A	C	664.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.111;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=1.138;SB=0.00;SOR=0.573;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,21:45:99:693,0,784
1	183176970	.	G	GTT	514.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=1.733;POSITIVE_TRAIN_SITE;QD=8.58;RPA=15,17;RU=T;ReadPosRankSum=-1.353;SB=-7.054e+01;SOR=0.756;STR;VQSLOD=2.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,33:64:99:552,0,628
1	183177218	rs647347	A	G	658.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.692;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=-0.409;SB=-4.176e+01;SOR=0.465;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,20:32:99:687,0,369
1	183184524	rs2274981	C	T	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=1.248;SB=-3.000e+01;SOR=0.724;VQSLOD=9.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,11:28:99:367,0,530
1	183184616	rs2274980	C	T	916.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.865;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-0.786;SB=-3.930e+02;SOR=0.784;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,35:68:99:945,0,864
1	183184848	rs875794	T	G	1167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.332;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.875;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=1.397;SB=-5.280e+02;SOR=0.534;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,45:87:99:1196,0,1051
1	183184960	rs875795	C	T	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-0.484;SB=0.00;SOR=0.836;VQSLOD=10.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:235,0,182
1	183187494	rs10911285	T	C	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.682;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.469;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-0.693;SB=-5.000e+01;SOR=1.375;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,15:39:99:460,0,712
1	183187603	rs1129723	C	T	930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.092;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.911;HaplotypeScore=3.3816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.968;SB=-6.320e+02;SOR=0.425;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,40:76:99:959,0,942
1	183187715	rs74971603	G	A	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-0.069;SB=-6.400e+01;SOR=1.127;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:446,0,379
1	183191144	rs2296307	C	T	917.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.966;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.811;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-0.946;SB=-1.640e+02;SOR=1.291;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,32:61:99:946,0,839
1	183192304	rs1047980	T	G	1765.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.591;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=2.221;HaplotypeScore=2.7649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.740;SB=-9.560e+02;SOR=0.488;VQSLOD=7.59;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,67:140:99:1794,0,1966
1	183194619	rs2021956	A	G	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.820;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-0.079;SB=-1.760e+02;SOR=0.473;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,18:36:99:501,0,463
1	183197305	rs6658628	A	G	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.458;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=1.378;SB=0.00;SOR=0.346;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:266,0,438
1	183200339	rs115441573	G	A	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.857;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.696;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.851;SB=-1.610e+02;SOR=0.233;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:30:99:372,0,429
1	183204477	rs2296302	G	A	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=0.841;SB=-8.800e+01;SOR=0.818;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,11:30:99:328,0,508
1	183205569	rs3738822	C	T	747.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.802;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.3403;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=0.862;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=0.927;SB=-1.210e+02;SOR=0.541;VQSLOD=2.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,27:45:99:776,0,460
1	183206573	rs1047981	G	A	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.590;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.783;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=-0.297;SB=-1.090e+02;SOR=0.577;VQSLOD=7.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,9:26:99:251,0,486
1	183207603	rs1925043	T	C	728.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.345;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.544;HaplotypeScore=2.7330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=0.714;SB=-9.500e+01;SOR=1.247;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,23:48:99:757,0,643
1	183209086	rs2477436	C	A	502.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=10.311;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.012;SB=-2.251e+02;SOR=0.042;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,21:43:99:531,0,684
1	183212171	rs3768594	C	A	565.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.475;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.828;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.775;SB=-1.205e+02;SOR=0.098;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,20:33:99:594,0,434
1	183212548	rs3768593	T	G	985.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.812;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-0.171;SB=-3.930e+02;SOR=0.446;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1014,0,921
1	183222013	rs503243	G	A	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.412;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-0.100;SB=-4.176e+01;SOR=0.160;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:141,0,167
1	183253959	rs603850	T	G	573.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.880;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.320;SB=-3.080e+02;SOR=0.201;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,25:46:99:602,0,647
1	183261710	rs944189	A	G	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-0.611;SB=-1.060e+02;SOR=0.283;VQSLOD=9.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,8:17:99:193,0,247
1	183471295	rs789193	G	T	678.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-7.797e+01;SOR=3.816;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:707,54,0
1	183471334	.	G	C	480.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.340;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.14;ReadPosRankSum=-0.638;SB=-6.200e+01;SOR=0.693;VQSLOD=8.31;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,17:34:99:509,0,525
1	183481943	.	C	CT	407.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DP=57;ExcessHet=3.0103;FS=5.282;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=0.818;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=8.32;RPA=20,21;RU=T;ReadPosRankSum=1.908;SB=-9.200e+01;SOR=1.697;STR;VQSLOD=0.177;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,24:57:99:445,0,288
1	183486859	rs789169	G	A	1886.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-8.080e+02;SOR=1.503;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1915,144,0
1	183516440	rs2702182	G	A	1056.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-6.370e+02;SOR=0.914;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:78:1085,78,0
1	183525452	rs699244	T	G	2177.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-9.240e+02;SOR=1.418;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2206,166,0
1	183533031	.	G	C	897.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=0.171;SB=-4.580e+02;SOR=0.685;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,29:51:99:926,0,626
1	183534935	rs2296164	C	T	1712.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-9.150e+02;SOR=1.140;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1741,126,0
1	183542387	rs2274064	T	C	2462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-1.440e+03;SOR=0.774;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2491,181,0
1	183559691	.	G	A	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.636;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.40;ReadPosRankSum=-0.820;SB=-3.400e+01;SOR=0.283;VQSLOD=7.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,8:22:99:213,0,474
1	183596497	.	T	C	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.857;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.234;SB=0.00;SOR=0.175;VQSLOD=7.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,6:21:99:184,0,529
1	183617266	rs17436878	C	G	3421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-1.995e+03;SOR=0.833;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3450,250,0
1	183711483	rs3820689	C	T	1848.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-8.160e+02;SOR=1.609;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1877,141,0
1	183852914	rs10797919	G	C	2134.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-1.140e+03;SOR=0.933;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2163,157,0
1	183857394	rs10911460	A	G	380.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-7.297e+01;SOR=2.670;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:409,30,0
1	183861007	rs3814329	G	A	406.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=1.596;SB=-7.100e+01;SOR=1.022;VQSLOD=10.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,15:22:99:435,0,197
1	183866849	rs12031722	G	T	420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.705;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.013;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-1.471;SB=-2.402e+01;SOR=1.588;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,15:37:99:449,0,690
1	183867085	rs3814330	C	T	514.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.260;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=1.092;SB=-1.010e+02;SOR=0.404;VQSLOD=8.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,18:36:99:543,0,534
1	183871637	rs4604659	G	A	910.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-2.800e+02;SOR=2.226;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:69:939,69,0
1	183873898	rs10797920	A	G	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=-0.251;SB=-1.765e+00;SOR=2.303;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:277,0,154
1	183876182	rs11591089	C	T	784.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=5.631;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=-3.110;SB=-3.540e+02;SOR=1.266;VQSLOD=6.23;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:59,32:91:99:813,0,1551
1	183876287	rs16861715	T	C	871.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.583;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.331;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=1.856;SB=-2.430e+02;SOR=1.409;VQSLOD=7.39;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,31:54:99:900,0,603
1	183891159	rs11803613	C	G	120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=0.552;SB=0.00;SOR=0.446;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:149,0,243
1	183895178	rs4328036	G	A	665.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.22;SB=-4.176e+01;SOR=4.407;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:694,54,0
1	183913540	rs17504460	C	T	362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.021;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=2.061;SB=0.00;SOR=1.739;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:391,0,133
1	183942950	rs2296714	C	T	580.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=0.00;SOR=5.670;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:609,48,0
1	183944444	rs2378795	C	T	787.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.75;SB=-3.677e+01;SOR=4.804;VQSLOD=4.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:816,63,0
1	183947757	.	G	GA	296.73	PASS	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.98;RPA=8,9;RU=A;SB=0.00;SOR=4.977;STR;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:12:33:334,33,0
1	184020945	rs2274432	G	A	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.210;SB=-9.500e+01;SOR=0.693;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:96:165,0,96
1	184023529	rs1046934	A	C	1019.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.764;HaplotypeScore=2.8133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=1.697;SB=-4.640e+02;SOR=0.791;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,44:103:99:1048,0,1558
1	184024203	rs11359086	TA	T	175.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.53;RPA=10,9;RU=A;ReadPosRankSum=0.385;SB=0.00;SOR=3.258;STR;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,9:10:1:210,1,0
1	184536171	rs749214	T	C	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.480;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.284;SB=-1.240e+02;SOR=0.148;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:185,0,138
1	184662181	rs1061508	C	T	776.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=4.307;HaplotypeScore=3.4419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-1.505;SB=-1.150e+02;SOR=1.493;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,27:68:99:805,0,1277
1	184663537	rs9425343	A	C	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.235;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.687;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.56;ReadPosRankSum=-0.780;SB=-1.080e+02;SOR=1.123;VQSLOD=7.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,15:53:99:429,0,1181
1	184663581	rs9425634	T	C	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.922;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.59;ReadPosRankSum=1.710;SB=-9.000e+01;SOR=0.593;VQSLOD=7.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,10:37:99:272,0,884
1	184663643	rs34236444	TA	T	83.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=21;ExcessHet=3.0103;FS=5.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.41;RPA=7,6;RU=A;ReadPosRankSum=0.263;SB=-2.657e-01;SOR=2.584;STR;VQSLOD=6.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:21:99:121,0,366
1	184670713	.	A	G	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.451;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-1.166;SB=-1.230e+02;SOR=0.425;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,8:25:99:190,0,514
1	184675814	rs1062994	G	A	2343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.224;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=3.691;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-1.284;SB=-1.408e+03;SOR=0.441;VQSLOD=6.80;culprit=DP	GT:AD:DP:GQ:PL	0/1:73,90:163:99:2372,0,1882
1	184677464	rs3736757	G	A	747.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.615;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.122;HaplotypeScore=3.3816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=2.033;SB=-1.580e+02;SOR=0.916;VQSLOD=7.80;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,29:65:99:776,0,1054
1	184681081	rs7525074	A	G	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.862;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.832;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=0.439;SB=0.00;SOR=0.906;VQSLOD=3.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,16:29:99:559,0,422
1	184695571	rs10752941	C	T	521.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.510;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.912;SB=-6.700e+01;SOR=0.737;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,19:44:99:550,0,776
1	184706212	rs10711907	GT	G	494.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.51;RPA=2,1;RU=T;ReadPosRankSum=0.063;SB=-1.560e+02;SOR=0.948;STR;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:532,0,330
1	184718750	rs35957626	GAAA	G	452.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQ0=0;MQRankSum=1.164;POSITIVE_TRAIN_SITE;QD=20.58;RPA=17,14;RU=A;ReadPosRankSum=0.068;SB=-3.800e+01;SOR=1.402;STR;VQSLOD=3.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,14:33:99:490,0,196
1	184760001	rs570441	T	C	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=-7.897e+01;SOR=4.003;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:63:867,63,0
1	184764067	rs581100	C	G	1829.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4701;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-6.700e+02;SOR=2.056;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1858,144,0
1	184777079	rs338564	G	A	366.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.384;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.532;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-0.219;SB=-7.397e+01;SOR=0.069;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:395,0,431
1	184777101	rs338565	G	A	709.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.460;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-0.613;SB=-6.200e+01;SOR=1.148;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,23:45:99:738,0,600
1	184777177	rs543912	C	A	1645.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.096;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.799;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.222;SB=-6.110e+02;SOR=0.505;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,62:112:99:1674,0,1491
1	184777467	rs338566	A	T	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.696;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=1.293;SB=-3.100e+01;SOR=2.066;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:495,0,227
1	185060950	rs201420664	CT	C	45.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.41;RPA=14,13;RU=T;ReadPosRankSum=1.185;SB=-2.539e+00;SOR=0.648;STR;VQSLOD=8.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:24:83:83,0,252
1	185069314	.	C	CT	508.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.90;RPA=3,4;RU=T;ReadPosRankSum=1.179;SB=-1.790e+02;SOR=0.807;STR;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:33:99:546,0,386
1	185097959	rs41264588	G	T	1076.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.444;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=0.727;SB=-1.020e+02;SOR=1.170;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,33:62:99:1105,0,914
1	185098098	rs41264590	T	A	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.601;SB=0.00;SOR=0.693;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:169,0,170
1	185112317	rs10797998	A	G	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=1.434;SB=0.00;SOR=0.551;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:167,0,190
1	185113216	rs150245199	AAG	A	681.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=-0.603;SB=-7.300e+01;SOR=0.846;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:34:99:719,0,676
1	185114834	.	G	GA	293.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.36;RPA=2,3;RU=A;ReadPosRankSum=0.217;SB=0.00;SOR=1.244;STR;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:18:99:331,0,196
1	185116158	rs34530355	CAT	C	182.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.367;SB=0.00;SOR=0.260;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,5:15:99:220,0,518
1	185116531	rs12043427	A	G	576.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.372;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=0.363;SB=0.00;SOR=0.811;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:605,0,528
1	185119794	rs1544051	C	T	548.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.52;SB=0.00;SOR=5.549;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:577,45,0
1	185137461	rs56166198	A	T	116.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.728;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.751;HaplotypeScore=3.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.59;ReadPosRankSum=2.131;SB=-1.709e+01;SOR=1.609;VQSLOD=3.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,7:45:99:145,0,1009
1	185143721	rs10489579	A	G	820.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.214;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.025;HaplotypeScore=5.2692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-0.104;SB=-4.580e+02;SOR=0.653;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,32:68:99:849,0,991
1	185153545	rs375713493	G	GT	341.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=0.579;QD=21.36;ReadPosRankSum=0.934;SB=-7.000e+01;SOR=1.022;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:16:99:379,0,263
1	185171869	rs6698109	A	G	859.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=0.132;SB=-5.710e+02;SOR=0.940;VQSLOD=8.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,40:87:99:888,0,1298
1	185201061	rs12096987	T	C	626.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.164;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.686;SB=-9.800e+01;SOR=0.396;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,21:56:99:655,0,1010
1	185240474	rs12041704	A	G	716.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.188;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.072;HaplotypeScore=4.1100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=-1.420;SB=-3.460e+02;SOR=0.769;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,28:51:99:745,0,709
1	185259731	rs2378909	A	G	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.496;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=7.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.16;ReadPosRankSum=-0.098;SB=-1.726e-02;SOR=2.636;VQSLOD=5.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,11:48:99:324,0,1066
1	185267114	rs10174	A	G	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.084;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-0.217;SB=-4.276e+01;SOR=0.299;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:418,0,320
1	185269916	rs10798006	T	C	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-1.188;SB=0.00;SOR=0.446;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:162,0,243
1	185833565	rs7556537	A	C	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=-0.685;SB=0.00;SOR=0.892;VQSLOD=10.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:374,0,285
1	185833880	rs41458549	A	G	510.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.845;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=8.659;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-1.049;SB=-2.657e-01;SOR=2.856;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,16:40:99:539,0,704
1	185834847	rs34137386	GTTTC	G	949.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DB;DP=44;ExcessHet=3.0103;FS=3.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.19;ReadPosRankSum=-0.814;SB=-2.430e+02;SOR=0.211;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,20:44:99:987,0,1402
1	185984517	rs6665753	T	C	1934.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=1.067;SB=-1.097e+03;SOR=0.623;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,78:136:99:1963,0,1648
1	185988567	rs11290212	CT	C	159.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;RPA=11,10;RU=T;ReadPosRankSum=0.000;SB=0.00;SOR=1.609;STR;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:81:197,0,81
1	186022032	rs10911808	T	G	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.739;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.403;SB=-2.801e+01;SOR=1.230;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:470,0,652
1	186026474	rs12129650	T	C	1227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.471;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=1.801;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=0.487;SB=-7.630e+02;SOR=0.699;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,47:84:99:1256,0,934
1	186030902	rs10737266	G	T	735.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.614;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=7.322;HaplotypeScore=2.5885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=0.036;SB=-1.807e+01;SOR=2.336;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,22:43:99:764,0,517
1	186031041	rs7522627	C	T	1260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=4.016;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.189;SB=-5.090e+02;SOR=1.188;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,48:95:99:1289,0,1072
1	186115161	.	G	GA	113.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=2.168;QD=4.55;RPA=14,15;RU=A;ReadPosRankSum=0.379;SB=-3.100e+01;SOR=1.048;STR;VQSLOD=1.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,8:26:99:151,0,301
1	186265948	rs1293987	T	A	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.856;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-0.732;SB=-1.680e+02;SOR=0.866;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,22:52:99:615,0,846
1	186270894	rs1547084	A	G	598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.376;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=0.437;SB=-1.970e+02;SOR=1.189;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,25:59:99:627,0,895
1	186273994	rs2273779	C	T	59.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=6.264;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.43;ReadPosRankSum=-0.778;SB=-2.657e-01;SOR=2.833;VQSLOD=6.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:12:88:88,0,219
1	186276661	rs61831150	A	G	152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7496;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.832;SB=-5.300e+01;SOR=1.022;VQSLOD=3.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:15:99:181,0,145
1	186277088	rs68069719	G	C	5291.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=32.9197;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-2.937e+03;SOR=0.925;VQSLOD=4.83;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,170:172:99:5320,385,0
1	186277989	rs3737940	A	G	327.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.971;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=1.621;SB=-6.700e+01;SOR=1.329;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:356,0,270
1	186305914	rs12085497	A	C	477.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.225;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=-0.221;SB=-7.200e+01;SOR=0.656;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:506,0,282
1	186310128	rs41302135	C	T	364.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.633;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=0.031;SB=-9.100e+01;SOR=0.859;VQSLOD=8.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,14:37:99:393,0,697
1	186313249	rs2950829	A	G	1223.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-3.570e+02;SOR=2.242;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1252,90,0
1	186316656	rs3753564	G	C	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=2.165;SB=-1.765e+00;SOR=1.148;VQSLOD=8.88;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,10:25:99:341,0,498
1	186321242	rs61744267	C	T	568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=0.879;SB=-2.200e+02;SOR=0.963;VQSLOD=7.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,25:66:99:597,0,1076
1	186329257	rs878041	C	A	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=1.335;SB=0.00;SOR=0.551;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:163,0,214
1	186329869	rs2026187	C	G	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=-0.342;SB=-1.960e+02;SOR=0.745;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:322,0,485
1	186330643	rs10494586	T	C	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.705;SB=0.00;SOR=0.593;VQSLOD=10.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:260,0,312
1	186352347	rs4651309	A	T	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.784;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-1.103;SB=-1.370e+02;SOR=0.616;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:511,0,449
1	186352351	rs183243524	G	C	437.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=0.498;SB=-1.040e+02;SOR=1.042;VQSLOD=9.35;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,15:30:99:466,0,348
1	186357523	rs1290390	T	C	863.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;SB=-3.377e+01;SOR=4.892;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:892,66,0
1	186363119	rs12084264	C	G	392.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-1.159;SB=-2.250e+02;SOR=0.804;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:421,0,514
1	186648197	rs5277	C	G	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.570;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=0.227;SB=-3.001e+01;SOR=0.340;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:203,0,347
1	186649221	rs2745557	A	G	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.023;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.341;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.669;SB=-2.460e+02;SOR=0.412;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:444,0,555
1	186901738	rs12720584	TTCTTCTTTTAAAA	T	1329.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=1.905;SB=-1.658e+02;SOR=0.346;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:1367,0,893
1	186908385	rs2307200	C	T	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.154;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=1.493;SB=-9.732e-01;SOR=2.133;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:289,0,430
1	186919675	rs12691467	A	G	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.52;ReadPosRankSum=0.365;SB=0.00;SOR=0.180;VQSLOD=8.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:89:89,0,262
1	186919732	rs4650709	A	T	1038.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-4.176e+01;SOR=5.283;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1067,81,0
1	186919993	rs969357	G	A	1796.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-1.165e+02;SOR=4.935;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1825,138,0
1	186925552	rs2307199	T	C	1375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.39;SB=-2.471e+02;SOR=2.948;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1404,102,0
1	186925636	rs7547623	T	G	368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=0.00;SOR=4.804;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:397,30,0
1	186934871	rs6695108	G	A	429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=0.00;SOR=5.136;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:458,36,0
1	186946912	rs2307198	G	A	2566.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-7.510e+02;SOR=2.303;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:79:99:2595,187,0
1	187610538	rs10157977	C	G	520.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.500;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.176;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=1.217;SB=-3.190e+02;SOR=0.634;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,20:33:99:549,0,399
1	187610852	rs10159182	A	T	420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=4.731;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.65;ReadPosRankSum=1.458;SB=-7.600e+01;SOR=1.625;VQSLOD=6.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,17:55:99:449,0,1003
1	187684296	rs150040575	GTGTTTATAGCA	G	892.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=0.873;SB=-2.660e+02;SOR=0.693;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:15:99:930,0,859
1	190234239	rs77612267	T	A	769.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.013;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=3.548;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=-0.797;SB=-9.200e+01;SOR=1.609;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,26:48:99:798,0,619
1	192128183	rs4454527	G	A	455.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-1.155e+02;SOR=2.448;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:484,36,0
1	192129370	rs4329489	G	A	852.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=0.00;SOR=6.358;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:881,69,0
1	192544754	.	C	CT	187.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.07;RPA=11,12;RU=T;ReadPosRankSum=2.362;SB=0.00;SOR=2.494;STR;VQSLOD=7.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:2,9:11:19:225,0,19
1	192544795	rs2984920	A	G	900.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.33;SB=0.00;SOR=6.518;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:929,69,0
1	192545099	rs7535818	G	A	844.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.36;SB=0.00;SOR=6.273;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:873,66,0
1	193051685	rs2275444	G	A	1527.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-2.750e+02;SOR=3.160;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1556,117,0
1	193054154	rs10921309	G	A	2136.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-7.880e+02;SOR=1.685;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2165,163,0
1	193074651	rs10921310	T	A	565.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.94;SB=-1.543e+02;SOR=1.911;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:16:45:594,45,0
1	193090865	rs10737621	C	A	1072.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-2.640e+02;SOR=1.981;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1101,84,0
1	193094375	rs4466634	T	C	1669.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-3.360e+02;SOR=2.833;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1698,126,0
1	193104827	rs10921318	G	A	450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=0.00;SOR=5.136;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:479,36,0
1	193205272	rs3738244	T	A	1951.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-4.740e+02;SOR=2.760;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1980,150,0
1	196227526	rs977157	A	G	2467.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-1.469e+03;SOR=0.902;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2496,181,0
1	196242764	rs558895	T	G	676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-7.897e+01;SOR=3.716;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:705,54,0
1	196251522	rs2477357	T	C	686.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-1.633e+02;SOR=2.737;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:715,51,0
1	196254970	rs2477360	C	T	461.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-8.097e+01;SOR=2.985;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:490,36,0
1	196296003	.	T	C	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.474;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.49;ReadPosRankSum=-1.156;SB=-1.330e+02;SOR=1.085;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:35:99:521,0,471
1	196303297	rs35078847	TAG	T	270.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.93;RPA=4,3;RU=AG;ReadPosRankSum=0.943;SB=0.00;SOR=0.593;STR;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:19:99:308,0,383
1	196311513	rs6658788	G	A	159.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.888;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=0.353;SB=0.00;SOR=0.293;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:188,0,402
1	196398619	rs1538684	T	C	574.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=0.00;SOR=5.549;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:603,45,0
1	196398974	rs12121250	T	A	634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-7.597e+01;SOR=3.716;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:663,51,0
1	196448149	rs76541854	G	A	866.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=1.263;SB=-3.770e+02;SOR=0.743;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,31:61:99:895,0,758
1	196461513	rs4607811	C	T	670.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.36;SB=0.00;SOR=5.892;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:699,54,0
1	196794680	rs41315553	G	A	478.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-1.233;QD=14.08;ReadPosRankSum=0.920;SB=-3.040e+02;SOR=0.671;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,19:34:99:507,0,386
1	196794909	rs409549	G	C	80.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.291;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.695;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.04;ReadPosRankSum=0.899;SB=-2.657e-01;SOR=1.547;VQSLOD=5.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:99:109,0,495
1	196795849	rs424722	A	G	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.77;ReadPosRankSum=-0.546;SB=-1.905e+01;SOR=0.631;VQSLOD=9.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:81:81,0,300
1	196796184	rs399507	G	A	1216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.333;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.862;HaplotypeScore=4.4521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.091;SB=-4.630e+02;SOR=1.070;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,45:91:99:1245,0,1087
1	196796240	rs438781	T	A	810.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=7.217;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-0.729;SB=-1.270e+02;SOR=1.877;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,28:51:99:839,0,618
1	196801190	rs390679	C	A	707.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.288;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.897;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.256;SB=-1.110e+02;SOR=1.749;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,26:52:99:736,0,653
1	196874356	rs10801578	G	T	505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-2.001e+02;SOR=1.609;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:534,39,0
1	196876458	rs7417769	A	G	3885.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-1.311e+03;SOR=2.001;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3914,283,0
1	196883940	.	T	TA	66.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=0;MQRankSum=-3.588;POSITIVE_TRAIN_SITE;QD=4.77;RPA=14,15;RU=A;ReadPosRankSum=-0.630;SB=0.00;SOR=0.473;STR;VQSLOD=1.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:15:99:104,0,146
1	196920148	rs4085749	C	T	824.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.677;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.124;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=1.182;SB=-4.530e+02;SOR=0.407;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,31:64:99:853,0,870
1	196920299	rs3790414	T	A	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=-0.282;SB=0.00;SOR=1.179;VQSLOD=10.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:244,0,164
1	196967458	rs1332664	G	T	873.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.353;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-0.173;SB=-3.580e+02;SOR=0.650;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,34:66:99:902,0,955
1	197008597	rs5990	A	C	1791.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-9.800e+02;SOR=1.107;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1820,129,0
1	197009798	rs5998	A	G	866.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-2.890e+02;SOR=1.893;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:895,66,0
1	197030201	rs5997	T	C	1862.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-3.470e+02;SOR=3.150;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1891,150,0
1	197030237	rs17549277	CT	C	842.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.09;RPA=6,5;RU=T;SB=0.00;SOR=6.869;STR;VQSLOD=2.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:34:90:880,90,0
1	197031021	rs6003	C	T	1880.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.85;SB=-1.194e+03;SOR=0.790;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1909,138,0
1	197053373	rs12677	G	A	938.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=-1.185e+02;SOR=3.690;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:967,72,0
1	197055925	rs10754213	T	C	1523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-4.120e+02;SOR=2.303;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1552,114,0
1	197059878	rs4915315	G	A	550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=0.00;SOR=5.549;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:579,45,0
1	197059892	rs10754214	A	G	663.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.23;SB=0.00;SOR=5.784;VQSLOD=8.00;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,17:17:51:692,51,0
1	197059928	rs4915316	A	G	981.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-1.115e+02;SOR=3.611;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:75:1010,75,0
1	197070521	rs12138336	C	G	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.311;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-1.056;SB=-3.280e+02;SOR=0.517;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,22:46:99:564,0,723
1	197070776	rs10922162	C	T	704.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.935;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=1.003;SB=-3.310e+02;SOR=0.867;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,27:68:99:733,0,1168
1	197070815	rs1412640	T	C	2334.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-1.427e+03;SOR=0.804;VQSLOD=5.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2363,169,0
1	197070901	rs964201	A	G	2423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-1.303e+03;SOR=0.934;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2452,178,0
1	197091537	rs4915337	A	T	1951.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-1.194e+03;SOR=0.790;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1980,147,0
1	197094030	rs6676084	C	T	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-0.092;SB=-5.800e+01;SOR=1.585;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:446,0,379
1	197101621	rs3737111	T	C	374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.48;SB=0.00;SOR=4.804;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:403,30,0
1	197102632	rs201066146	T	C	1787.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.592;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=4.377;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.469;SB=-9.380e+02;SOR=0.389;VQSLOD=7.42;culprit=DP	GT:AD:DP:GQ:PL	0/1:67,60:127:99:1816,0,1753
1	197102745	rs4915344	A	G	957.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.377;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=0.814;SB=-2.171e+02;SOR=0.300;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,34:56:99:986,0,668
1	197102839	rs4915345	A	C	433.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.72;SB=0.00;SOR=5.136;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:462,36,0
1	197104149	rs35659894	TA	T	872.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;RPA=3,2;RU=A;SB=0.00;SOR=6.358;STR;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:910,69,0
1	197109042	rs1332663	C	T	547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-1.135e+02;SOR=2.833;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:576,45,0
1	197112533	rs6677082	G	A	2942.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7845;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-1.665e+03;SOR=0.836;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2971,217,0
1	197113073	rs1571964	G	A	810.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=-3.680e+02;SOR=1.270;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:839,63,0
1	197128726	rs12128631	G	A	1754.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.556;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.608;HaplotypeScore=6.3844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-0.020;SB=-1.042e+03;SOR=0.760;VQSLOD=7.49;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,69:146:99:1783,0,2072
1	197141243	.	A	C	344.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=5.6544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.97;ReadPosRankSum=-1.275;SB=-1.120e+02;SOR=2.147;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,13:15:7:372,0,7
1	197141253	rs10429910	A	C	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.021;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=0.950;SB=-1.070e+02;SOR=1.508;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:333,0,148
1	197297540	rs12042179	A	T	353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-1.405;SB=-3.377e+01;SOR=0.551;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:382,0,180
1	197316435	rs1337167	T	C	3703.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-1.387e+03;SOR=1.911;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3732,274,0
1	197325908	rs2786098	T	G	2171.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-1.020e+03;SOR=1.318;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2200,169,0
1	197390368	RISN_CRB1	A	G	2844.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-1.254e+03;SOR=1.375;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2873,208,0
1	197407942	rs980371	A	G	369.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.26;SB=0.00;SOR=4.804;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:398,30,0
1	197411409	RISN_CRB1	G	A	964.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.900;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.350;SB=-4.790e+02;SOR=0.840;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,33:72:99:993,0,1035
1	197508901	rs4915551	G	A	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.80;SB=0.00;SOR=4.804;VQSLOD=8.57;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
1	197510025	rs3902061	G	T	867.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-7.797e+01;SOR=4.174;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:896,69,0
1	197510299	rs3850628	G	A	741.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-4.176e+01;SOR=4.712;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:770,60,0
1	197515253	rs11276673	ATGTTCAG	A	682.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;RPA=2,1;RU=TGTTCAG;SB=0.00;SOR=4.407;STR;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:11:24:720,24,0
1	197515715	rs4303099	G	A	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.63;SB=0.00;SOR=4.977;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
1	197515777	rs4316386	A	T	1092.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-7.997e+01;SOR=3.912;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1121,81,0
1	197576307	rs5779882	A	AT	1083.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.39;RPA=1,2;RU=T;SB=-2.641e+02;SOR=2.303;STR;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:27:78:1121,78,0
1	197615058	rs6688289	C	T	471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.29;SB=0.00;SOR=5.283;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:500,39,0
1	197741951	rs2477067	C	A	1499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-6.000e+02;SOR=1.708;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1528,111,0
1	197742171	rs2488396	C	T	713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.06;SB=0.00;SOR=5.994;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:742,57,0
1	197872019	rs4539165	G	T	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.560;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=0.293;SB=-9.000e+01;SOR=0.595;VQSLOD=7.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:99:173,0,281
1	197890422	rs12122995	C	G	1384.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-5.260e+02;SOR=1.721;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1413,102,0
1	197896728	rs12046958	T	C	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.125;SB=-6.600e+01;SOR=0.473;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:216,0,198
1	197901206	.	C	CA	389.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQ0=0;MQRankSum=2.404;QD=9.99;RPA=9,10;RU=A;ReadPosRankSum=1.719;SB=-4.900e+01;SOR=0.544;STR;VQSLOD=1.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,18:44:99:427,0,429
1	198214462	rs12046935	G	A	789.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.666;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.955;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.793;SB=-4.260e+02;SOR=0.609;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,31:65:99:818,0,899
1	198233383	.	T	A	397.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.12;ReadPosRankSum=1.208;SB=-2.030e+02;SOR=0.545;VQSLOD=6.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,17:49:99:426,0,870
1	198246939	rs4915274	A	C	454.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.98;ReadPosRankSum=-0.401;SB=0.00;SOR=3.767;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:13:36:483,36,0
1	198288709	rs6679100	A	G	2640.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-4.290e+02;SOR=3.287;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2669,199,0
1	198498325	rs139314248	AAT	A	314.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.97;RPA=10,9;RU=AT;SB=-4.276e+01;SOR=3.056;STR;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:11:27:352,27,0
1	198661217	rs12125257	A	G	281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.256;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=-0.954;SB=0.00;SOR=0.693;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:310,0,293
1	198668761	rs41269905	G	C	1430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.605;HaplotypeScore=4.0958;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.100;SB=-9.140e+02;SOR=0.728;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,58:102:99:1459,0,1075
1	198672299	rs16843742	T	C	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.210;SB=0.00;SOR=1.085;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:172,0,133
1	198672313	rs41313930	A	C	147.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.880;SB=0.00;SOR=0.859;VQSLOD=9.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:176,0,164
1	198677420	rs2274368	T	A	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.41;ReadPosRankSum=0.990;SB=0.00;SOR=0.188;VQSLOD=8.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:118,0,340
1	198717218	.	GT	G	91.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=1.644;POSITIVE_TRAIN_SITE;QD=2.62;RPA=16,15;RU=T;ReadPosRankSum=-0.311;SB=-5.300e+01;SOR=0.495;STR;VQSLOD=2.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,10:39:99:129,0,517
1	198723367	.	G	GATT	319.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.83;RPA=2,3;RU=ATT;ReadPosRankSum=0.000;SB=-4.500e+01;SOR=1.565;STR;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,7:19:99:357,0,604
1	200080462	rs368214730	A	AT	37.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.669;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.651;SB=-3.400e+01;SOR=0.527;VQSLOD=7.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:17:75:75,0,382
1	200080464	rs202167972	C	A	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.49;ReadPosRankSum=1.305;SB=-6.500e+01;SOR=0.301;VQSLOD=7.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:132,0,242
1	200143064	rs3034024	CTTTT	C	492.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=0.822;POSITIVE_TRAIN_SITE;QD=11.55;RPA=19,15;RU=T;ReadPosRankSum=1.001;SB=-6.401e+01;SOR=0.527;STR;VQSLOD=3.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,15:33:99:530,0,536
1	200143281	rs1060060	C	T	1505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.778;HaplotypeScore=1.4450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=0.768;SB=-7.990e+02;SOR=0.588;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,53:96:99:1534,0,1010
1	200143442	rs1060061	T	C	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.436;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=-0.032;SB=-3.501e+01;SOR=0.250;VQSLOD=9.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:23:99:224,0,461
1	200182654	rs6427805	T	C	394.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-1.205e+02;SOR=2.147;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:30:423,30,0
1	200182664	rs6427806	C	T	439.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.49;SB=-1.931e+02;SOR=1.609;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:468,33,0
1	200182834	rs12028402	A	G	1782.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-8.000e+02;SOR=1.532;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1811,138,0
1	200183398	rs10919847	C	A	799.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-3.990e+02;SOR=1.220;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:60:828,60,0
1	200183460	rs10919848	C	T	364.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.735;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=-0.148;SB=-6.400e+01;SOR=2.303;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,13:18:99:393,0,120
1	200311674	rs2790110	C	A	738.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-1.951e+02;SOR=2.200;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:767,57,0
1	200311868	rs2790109	C	G	1716.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-9.440e+02;SOR=1.140;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1745,123,0
1	200312546	rs61101900	CA	C	185.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.559;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;RPA=15,14;RU=A;ReadPosRankSum=-1.206;SB=-6.051e+01;SOR=0.941;STR;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:17:9:222,9,0
1	200523514	rs7548174	A	G	422.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-4.276e+01;SOR=3.767;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:451,36,0
1	200524694	rs75006872	T	A	454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=0.00;SOR=5.136;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:483,36,0
1	200534248	rs7543730	C	T	4220.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-2.119e+03;SOR=1.286;VQSLOD=5.22;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4249,307,0
1	200538885	rs10800711	C	T	364.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-8.097e+01;SOR=2.494;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:393,30,0
1	200549590	rs10753877	T	C	588.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=0.00;SOR=5.549;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:617,45,0
1	200558363	rs6665951	T	C	833.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.06;SB=-5.230e+02;SOR=1.112;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:60:862,60,0
1	200569392	rs2809357	C	A	1983.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.20;SB=-5.760e+02;SOR=2.303;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2012,153,0
1	200578093	rs2794409	G	A	584.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-2.231e+02;SOR=1.721;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:45:613,45,0
1	200594005	rs2808257	C	T	2135.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-4.230e+02;SOR=3.126;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2164,166,0
1	200594240	rs2809350	G	A	1708.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-3.540e+02;SOR=2.970;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1737,129,0
1	200618238	rs6665604	T	C	1686.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=-9.390e+02;SOR=0.986;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1715,126,0
1	200619478	rs2808230	C	A	1050.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-3.677e+01;SOR=5.353;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1079,84,0
1	200619530	rs2809365	T	C	1741.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-4.450e+02;SOR=2.540;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1770,129,0
1	200632890	.	C	T	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=0.524;QD=5.88;ReadPosRankSum=1.026;SB=0.00;SOR=0.412;VQSLOD=1.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:87:87,0,213
1	200632960	rs57155598	T	C	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-1.084;SB=0.00;SOR=0.693;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:374,0,373
1	200632966	rs60572979	A	G	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-1.288;SB=-2.901e+01;SOR=0.770;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:405,0,408
1	200635550	rs3795634	T	C	1134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.793;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.809;SB=-6.330e+02;SOR=0.578;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,43:89:99:1163,0,1338
1	200635560	rs3795633	T	C	1292.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.293;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-0.807;SB=-6.210e+02;SOR=0.702;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,48:91:99:1321,0,1222
1	200776641	rs7552353	C	T	1001.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=2.839;HaplotypeScore=6.8753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=0.726;SB=-5.040e+02;SOR=1.014;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,38:92:99:1030,0,1267
1	200801621	rs1874080	T	A	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=0.000;SB=0.00;SOR=0.269;VQSLOD=9.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:124,0,266
1	200802045	rs78225055	C	T	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.576;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=1.010;SB=0.00;SOR=0.976;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:268,0,163
1	200811313	.	A	AT	166.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.18;RPA=10,11;RU=T;ReadPosRankSum=-0.452;SB=0.00;SOR=0.317;STR;VQSLOD=7.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:30:99:204,0,353
1	200816658	rs2131834	T	C	329.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-4.276e+01;SOR=3.258;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:358,27,0
1	200843305	rs3738250	G	T	552.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=8.478;HaplotypeScore=12.8257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=0.475;SB=-2.501e+01;SOR=2.876;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:581,0,371
1	200843307	rs376578920	T	TCCCG	714.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;DB;DP=31;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.48;RPA=1,2;RU=CCCG;ReadPosRankSum=-0.266;SB=-1.320e+02;SOR=0.171;STR;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,12:31:99:752,0,1069
1	200867492	rs2271018	C	G	504.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.523;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=2.572;SB=-2.140e+02;SOR=1.127;VQSLOD=6.39;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,19:32:99:533,0,404
1	200867572	rs41269923	T	A	354.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.515;HaplotypeScore=1.8279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-1.981;SB=-2.090e+02;SOR=0.412;VQSLOD=7.32;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,15:28:99:383,0,410
1	200877786	rs2279837	T	C	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.060;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=0.283;SB=-1.270e+02;SOR=0.343;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:297,0,148
1	200880702	rs61740234	C	T	725.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.817;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.989;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=1.863;SB=-4.990e+02;SOR=0.466;VQSLOD=7.12;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,33:69:99:754,0,1029
1	200881392	rs10800746	C	T	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=7.605;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=-0.725;SB=-2.004e+01;SOR=2.584;VQSLOD=6.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,8:21:99:224,0,365
1	200943793	rs71991687	CAGGA	C	6685.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;RPA=2,1;RU=AGGA;SB=-1.976e+03;SOR=1.921;STR;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:99:99:6723,292,0
1	200944840	rs296563	T	G	573.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-8.297e+01;SOR=3.383;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:602,45,0
1	200945757	rs10505675	A	G	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.454;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.945;SB=-3.830e+02;SOR=0.368;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:56:99:690,0,736
1	200945910	rs61740477	G	A	1117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=8.625;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.796;SB=-4.910e+02;SOR=1.096;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1146,0,1074
1	200967778	rs7538954	G	T	916.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=1.987;SB=-3.050e+02;SOR=0.693;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,33:52:99:945,0,490
1	201009897	rs6427875	T	C	621.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-1.603e+02;SOR=2.531;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:650,51,0
1	201020105	rs6702590	A	G	1676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-8.910e+02;SOR=1.118;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1705,129,0
1	201031307	rs2297903	A	C	2079.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.65;SB=-3.976e+01;SOR=6.630;VQSLOD=3.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2108,157,0
1	201042153	rs3767506	C	T	636.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.194;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-1.335;SB=-6.800e+01;SOR=1.022;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,21:37:99:665,0,427
1	201042618	rs9333652	G	A	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.69;ReadPosRankSum=1.922;SB=-2.402e+01;SOR=0.465;VQSLOD=9.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:142,0,434
1	201043845	rs66932448	ACT	A	566.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=0.891;POSITIVE_TRAIN_SITE;QD=24.64;RPA=2,1;RU=CT;ReadPosRankSum=-1.260;SB=0.00;SOR=1.179;STR;VQSLOD=3.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,14:23:99:604,0,408
1	201044583	.	T	A	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.044;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.479;HaplotypeScore=26.4723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.67;ReadPosRankSum=4.559;SB=-1.352e-01;SOR=3.611;VQSLOD=1.84;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,16:38:99:164,0,685
1	201044748	rs1998721	A	G	1944.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.245;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=1.187;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=1.750;SB=-1.207e+03;SOR=0.570;VQSLOD=6.11;culprit=DP	GT:AD:DP:GQ:PL	0/1:96,82:178:99:1973,0,2370
1	201047062	rs4915476	G	A	1060.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.491;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=2.946;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-1.022;SB=-3.310e+02;SOR=1.103;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,40:96:99:1089,0,1545
1	201047075	rs4915477	A	G	3187.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-1.340e+03;SOR=1.656;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3216,247,0
1	201047135	rs16847674	G	A	2105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.376;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=6.045;HaplotypeScore=2.6785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-0.992;SB=-1.399e+03;SOR=0.407;VQSLOD=7.20;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,85:150:99:2134,0,1709
1	201052199	rs3767511	T	C	1094.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.954;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=0.159;SB=-1.480e+02;SOR=0.547;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,35:50:99:1123,0,469
1	201052283	rs3767512	G	A	1228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.506;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=1.736;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-0.838;SB=-3.320e+02;SOR=0.901;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:69,47:116:99:1257,0,1910
1	201054197	rs41267505	G	T	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.440;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.423;HaplotypeScore=1.4450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-1.605;SB=-1.560e+02;SOR=1.065;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:480,0,457
1	201058692	rs2296384	T	C	317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.982;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=-0.868;SB=0.00;SOR=1.244;VQSLOD=10.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:346,0,187
1	201060865	rs2296383	G	A	1287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.700;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=1.237;SB=-7.560e+02;SOR=0.541;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:70,51:121:99:1316,0,1725
1	201079235	rs1325310	C	T	1425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=-2.990e+02;SOR=2.726;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1454,105,0
1	201079458	rs1325309	T	A	2108.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=-6.640e+02;SOR=2.019;VQSLOD=6.80;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2137,157,0
1	201079590	rs7513829	C	A	405.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=0.00;SOR=4.977;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:434,33,0
1	201083930	rs2274236	A	G	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.0169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-0.489;SB=-9.600e+01;SOR=0.941;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:237,0,253
1	201112981	rs8158	A	G	900.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.591;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.887;HaplotypeScore=2.9463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-0.293;SB=-4.190e+02;SOR=1.015;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,33:80:99:929,0,1176
1	201113118	rs3738266	A	G	2118.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-9.880e+02;SOR=1.352;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2147,157,0
1	201116018	rs3752979	C	G	1997.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-4.490e+02;SOR=2.794;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2026,150,0
1	201120730	rs2068152	C	A	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.739;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.260;SB=-3.100e+01;SOR=1.302;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:341,0,378
1	201122784	rs6684980	C	T	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=-1.039;SB=-9.800e+01;SOR=0.392;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:274,0,433
1	201122947	rs1925361	T	G	1857.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-1.153e+03;SOR=0.793;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1886,141,0
1	201162411	rs12089471	G	A	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.861;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.66;ReadPosRankSum=-1.701;SB=-8.800e+01;SOR=0.616;VQSLOD=8.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,8:27:99:154,0,568
1	201163191	rs1107128	G	T	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.283;SB=-3.110e+02;SOR=0.553;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,22:39:99:534,0,449
1	201166281	rs7533096	C	T	2090.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.505;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=1.373;HaplotypeScore=2.8798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-0.926;SB=-1.020e+03;SOR=0.574;VQSLOD=7.82;culprit=DP	GT:AD:DP:GQ:PL	0/1:64,71:135:99:2119,0,1796
1	201166383	rs4915221	G	A	1474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=3.488;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.820;SB=-9.530e+02;SOR=0.389;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,63:117:99:1503,0,1462
1	201166435	rs11589317	T	C	2833.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-9.540e+02;SOR=1.900;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2862,229,0
1	201166598	rs12759657	C	T	171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-0.185;SB=0.00;SOR=0.693;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:200,0,214
1	201169601	rs35998091	C	T	753.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.633;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.076;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=-0.166;SB=-1.155e+02;SOR=0.079;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,25:44:99:782,0,626
1	201170772	rs10157730	A	G	1553.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-3.110e+02;SOR=3.033;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1582,117,0
1	201170824	rs10158976	C	G	2143.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-1.124e+03;SOR=1.240;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2172,157,0
1	201171007	rs10800762	T	G	1260.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-2.051e+02;SOR=3.321;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:93:1289,93,0
1	201173104	rs832160	C	T	2421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-6.930e+02;SOR=2.365;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2450,184,0
1	201174204	rs12725611	C	T	355.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-1.213;SB=-1.640e+02;SOR=0.765;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,13:35:99:384,0,613
1	201174215	rs11584104	C	A	632.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.465;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=1.051;SB=-2.810e+02;SOR=1.112;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,22:33:99:661,0,301
1	201175227	rs832156	C	A	1757.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-9.490e+02;SOR=0.804;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1786,135,0
1	201175274	rs9651057	A	G	632.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.180;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.133;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.248;SB=-3.880e+02;SOR=0.416;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,25:48:99:661,0,710
1	201175715	rs1341631	G	T	2339.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SB=-1.180e+03;SOR=0.693;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2368,178,0
1	201175768	rs116753369	G	C	977.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.294;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.985;HaplotypeScore=2.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.439;SB=-3.770e+02;SOR=0.509;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,32:69:99:1006,0,1123
1	201176018	rs10753895	A	G	1711.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.24;SB=-7.560e+02;SOR=1.270;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1740,126,0
1	201181223	rs12070919	A	G	3064.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.44;SB=-1.679e+03;SOR=0.809;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3093,223,0
1	201182574	.	G	C	839.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.573;DP=46;Dels=0.00;ExcessHet=3.0103;FS=5.172;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.26;ReadPosRankSum=1.183;SB=-1.690e+02;SOR=1.730;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,28:46:99:868,0,485
1	201183424	rs41304263	G	A	778.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.025;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.732;SB=-4.520e+02;SOR=0.847;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,31:64:99:807,0,836
1	201184878	rs61743921	C	A	948.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.116;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=-0.524;SB=-6.000e+02;SOR=0.715;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,36:53:99:977,0,439
1	201187764	rs10920144	T	C	1715.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-1.034e+03;SOR=0.877;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1744,132,0
1	201187828	rs3738268	T	C	1185.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-6.010e+02;SOR=1.121;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:93:1214,93,0
1	201187954	rs6667020	C	T	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=0.00;SOR=4.804;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
1	201193668	rs6687494	G	T	1895.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-7.530e+02;SOR=1.460;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1924,141,0
1	201195119	rs3738270	C	T	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.988;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.64;ReadPosRankSum=-0.855;SB=-2.560e+02;SOR=0.610;VQSLOD=8.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,20:64:99:453,0,1105
1	201197299	rs3753970	G	A	266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-0.259;SB=0.00;SOR=0.693;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:295,0,242
1	201197331	rs3753971	G	A	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.473;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=1.665;SB=-1.765e+00;SOR=1.508;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:472,0,472
1	201197358	rs3753972	G	C	625.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.275;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=-0.035;SB=-6.800e+01;SOR=0.602;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:654,0,746
1	201197471	rs3753973	T	C	1060.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.761;HaplotypeScore=2.7881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-0.959;SB=-5.940e+02;SOR=0.518;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,42:102:99:1089,0,1588
1	201282167	rs1772860	C	G	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.409;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=1.097;SB=-1.765e+00;SOR=1.765;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:349,0,313
1	201285759	rs1779297	A	G	2668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-1.559e+03;SOR=0.693;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2697,196,0
1	201285909	rs1534051	A	G	487.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.333;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=0.528;SB=-8.097e+01;SOR=0.165;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,15:25:99:516,0,335
1	201286614	rs11336457	GA	G	438.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;RPA=10,9;RU=A;SB=-1.143e+02;SOR=2.303;STR;VQSLOD=4.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:20:54:476,54,0
1	201286628	rs1772823	C	G	705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-2.011e+02;SOR=2.030;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:734,54,0
1	201286678	rs1794867	C	T	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.746;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.17;ReadPosRankSum=0.533;SB=-5.900e+01;SOR=0.661;VQSLOD=6.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,7:34:99:170,0,690
1	201286771	rs1722779	C	T	418.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.833;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.773;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=2.065;SB=-1.790e+02;SOR=0.947;VQSLOD=6.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:24,15:39:99:447,0,587
1	201288007	rs1794868	G	A	386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.31;SB=-4.176e+01;SOR=3.442;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:415,30,0
1	201288898	rs1722759	A	C	2346.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.27;SB=-5.730e+02;SOR=2.531;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2375,175,0
1	201288955	rs1626370	G	A	971.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.932;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-1.545;SB=-3.550e+02;SOR=0.741;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,37:99:99:1000,0,1822
1	201289175	rs1628151	G	A	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.721;SB=-4.700e+01;SOR=0.760;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:504,0,473
1	201290968	rs1779292	T	G	509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-8.297e+01;SOR=3.126;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:538,39,0
1	201291066	rs2071960	C	T	1195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.156;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.063;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=0.713;SB=-3.790e+02;SOR=0.954;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,42:68:99:1224,0,662
1	201291283	rs1772832	C	T	464.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.086;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.504;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=1.583;SB=-6.800e+01;SOR=0.188;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,16:39:99:493,0,660
1	201292036	rs1779289	T	C	232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-1.197;SB=-1.765e+00;SOR=1.179;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:261,0,385
1	201292110	rs1779288	T	C	1549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-6.180e+02;SOR=1.659;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1578,114,0
1	201293512	rs36076398	TG	T	1122.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DB;DP=59;ExcessHet=3.0103;FS=3.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.03;RPA=3,2;RU=G;ReadPosRankSum=-1.670;SB=-3.280e+02;SOR=1.209;STR;VQSLOD=7.17;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:28,31:59:99:1160,0,1018
1	201293970	rs1620046	C	T	584.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.72;SB=-4.176e+01;SOR=4.047;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:613,45,0
1	201293985	rs854505	G	A	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.765;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=9.031;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.24;ReadPosRankSum=0.163;SB=-8.097e+01;SOR=0.023;VQSLOD=6.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:160,0,318
1	201330583	rs2275861	A	G	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.476;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=0.326;SB=-2.302e+01;SOR=1.179;VQSLOD=9.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:168,0,281
1	201331335	rs11807637	A	G	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=5.756;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=-0.067;SB=-2.801e+01;SOR=2.584;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:246,0,181
1	201331554	rs1104859	T	G	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.993;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-0.318;SB=-1.630e+02;SOR=0.582;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,12:30:99:342,0,455
1	201331664	rs2365652	C	A	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.512;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=0.849;SB=-9.600e+01;SOR=1.038;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:280,0,372
1	201333703	rs2275860	C	T	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.956;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.113;SB=-3.876e+01;SOR=0.188;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:288,0,353
1	201334382	rs3729547	G	A	964.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.751;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=2.866;SB=-5.440e+02;SOR=0.448;VQSLOD=7.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,33:56:99:993,0,663
1	201335899	rs1573230	C	T	728.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-1.991e+02;SOR=2.124;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:25:57:757,57,0
1	201336984	rs3729843	C	T	515.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.042;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-0.091;SB=-2.870e+02;SOR=0.671;VQSLOD=10.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,18:25:99:544,0,151
1	201337170	rs3729842	A	G	843.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-4.100e+02;SOR=1.302;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:872,66,0
1	201338553	rs10800776	T	C	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.821;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.32;ReadPosRankSum=0.296;SB=-2.657e-01;SOR=1.075;VQSLOD=8.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,10:31:99:255,0,608
1	201338586	rs10920183	A	G	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.747;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=-0.747;SB=-3.400e+01;SOR=0.223;VQSLOD=8.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:193,0,467
1	201338896	rs10920184	T	C	801.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.949;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-1.274;SB=-3.520e+02;SOR=0.922;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,32:67:99:830,0,913
1	201339043	rs12049476	C	T	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.047;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-1.019;SB=-1.550e+02;SOR=0.931;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:559,0,546
1	201339044	rs45584633	G	A	510.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.296;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.032;SB=-2.070e+02;SOR=0.501;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:539,0,591
1	201341175	rs45533739	CAGAAG	C	1231.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=1.107;POSITIVE_TRAIN_SITE;QD=19.45;RPA=2,1;RU=AGAAG;ReadPosRankSum=-0.790;SB=-4.000e+02;SOR=0.560;STR;VQSLOD=3.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,18:39:99:1269,0,1501
1	201341341	rs868407	C	T	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=0.123;SB=-1.290e+02;SOR=0.578;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,17:40:99:470,0,599
1	201351421	rs2275866	T	A	1420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.714;HaplotypeScore=2.6552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=1.110;SB=-8.390e+02;SOR=0.566;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,54:110:99:1449,0,1427
1	201353827	rs10920189	G	C	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.241;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.498;SB=-6.800e+01;SOR=0.392;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:269,0,397
1	201355522	rs4128458	T	C	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.228;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.082;SB=-6.700e+01;SOR=1.022;VQSLOD=10.24;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,9:19:99:251,0,252
1	201355943	rs2799677	C	T	786.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.431;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.249;SB=-3.710e+02;SOR=0.635;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,30:64:99:815,0,976
1	201356001	rs78190062	CCCA	C	899.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DB;DP=44;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.45;RPA=2,1;RU=CCA;ReadPosRankSum=-0.048;SB=-3.250e+02;SOR=0.439;STR;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,18:44:99:937,0,1488
1	201356428	rs4915230	C	A	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.903;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.955;SB=-2.801e+01;SOR=1.022;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:334,0,353
1	201358304	rs3738281	C	A	873.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.171;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.889;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=0.436;SB=-4.900e+02;SOR=0.880;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,35:73:99:902,0,948
1	201360379	rs60465361	T	C	146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-0.437;SB=-3.377e+01;SOR=0.223;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:175,0,160
1	201383616	rs2026593	A	G	385.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.69;SB=-2.061e+02;SOR=1.739;VQSLOD=3.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:33:414,33,0
1	201383643	rs2026594	A	C	673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;SB=-2.471e+02;SOR=1.721;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:702,51,0
1	201384703	rs5780068	AC	A	233.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;RPA=9,8;RU=C;SB=0.00;SOR=4.407;STR;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:11:24:271,24,0
1	201434740	rs1053592	G	A	456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6274;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-1.205e+02;SOR=2.303;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:16:36:485,36,0
1	201435069	rs1053582	C	A	984.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.424;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.385;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=0.541;SB=-5.050e+02;SOR=0.757;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,36:66:99:1013,0,846
1	201453289	rs576697	T	C	1676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;SB=-1.205e+02;SOR=4.892;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1705,138,0
1	201457639	rs35324992	GA	G	129.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.65;RPA=3,2;RU=A;ReadPosRankSum=0.245;SB=-1.765e+00;SOR=0.892;STR;VQSLOD=9.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:167,0,338
1	201489285	rs45565444	G	C	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.93;MQ0=0;MQRankSum=-2.684;POSITIVE_TRAIN_SITE;QD=7.76;ReadPosRankSum=-0.408;SB=-9.500e+01;SOR=0.832;VQSLOD=2.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:168,0,331
1	201489286	rs4310467	C	G	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.09;MQ0=0;MQRankSum=2.913;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=0.423;SB=-2.080e+02;SOR=0.495;VQSLOD=3.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,12:19:99:334,0,170
1	201749520	rs529581	G	C	583.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=8.018;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.740;SB=-2.190e+02;SOR=1.684;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,23:50:99:612,0,680
1	201752429	rs527725	A	C	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.180;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=-1.218;SB=0.00;SOR=1.493;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:441,0,177
1	201754410	.	CTT	CT,C	646.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.79;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.95;RPA=17,16,15;RU=T;SB=-1.080e+02;SOR=2.753;STR;VQSLOD=3.60;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,12,15:31:99:684,337,269,268,0,251
1	201755469	rs12563363	C	G	615.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=1.014;SB=-1.900e+02;SOR=0.722;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,23:63:99:644,0,1189
1	201755933	rs12048682	A	G	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-0.563;SB=-5.700e+01;SOR=0.859;VQSLOD=10.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:216,0,209
1	201763184	rs564440	T	C	949.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.38;SB=-6.970e+02;SOR=0.804;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:69:978,69,0
1	201763208	rs12028333	A	G	228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.103;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.407;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.35;ReadPosRankSum=0.201;SB=-9.400e+01;SOR=0.990;VQSLOD=6.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,11:36:99:257,0,549
1	201763499	rs567185	C	T	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.568;SB=-4.076e+01;SOR=0.188;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:327,0,332
1	201763912	rs481530	T	C	638.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.96;SB=-8.297e+01;SOR=3.500;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:667,48,0
1	201772863	.	T	TG	1519.73	PASS	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.97;RPA=3,4;RU=G;SB=-4.410e+02;SOR=1.923;STR;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:40:99:1557,117,0
1	201773707	.	TA	T	84.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;DP=36;ExcessHet=3.0103;FS=5.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.82;RPA=23,22;RU=A;ReadPosRankSum=-0.668;SB=-1.807e+01;SOR=1.773;STR;VQSLOD=4.63;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:36:99:122,0,283
1	201777250	rs2820289	C	T	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.494;SB=-1.980e+02;SOR=0.745;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:402,0,488
1	201788804	rs11803449	G	A	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-3.876e+01;SOR=4.294;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:628,48,0
1	201798434	rs139186949	C	T	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=1.738;SB=-1.300e+02;SOR=0.693;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:210,0,299
1	201816572	rs12042456	G	A	1885.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-8.220e+02;SOR=1.262;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1914,147,0
1	201832451	rs2678206	T	G	712.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-3.976e+01;SOR=4.514;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:741,54,0
1	201840210	rs950114	T	C	1582.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-6.000e+02;SOR=1.802;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1611,117,0
1	201840464	rs2644124	T	C	1737.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.9131;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-5.140e+02;SOR=1.981;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1766,132,0
1	201844128	rs2678203	G	A	1359.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-8.280e+02;SOR=0.829;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1388,102,0
1	201845309	rs201201005	G	T	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.998;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.59;ReadPosRankSum=0.475;SB=-9.100e+01;SOR=0.247;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:367,0,567
1	201860626	rs2250377	A	G	553.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-3.650e+02;SOR=0.793;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:582,42,0
1	201861016	rs2279681	C	G	638.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.77;SB=-3.300e+02;SOR=1.179;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:667,48,0
1	201865763	rs8028	A	G	2507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-1.372e+03;SOR=1.101;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2536,181,0
1	201915550	rs41305074	G	A	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.029;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=1.401;SB=0.00;SOR=1.292;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:405,0,231
1	201924749	rs3820438	G	C	409.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=1.9830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=0.543;SB=-2.220e+02;SOR=0.829;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,15:16:2:436,0,2
1	201926386	.	C	CT	2048.73	PASS	AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;RPA=8,9;RU=T;SB=-5.940e+02;SOR=1.897;STR;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:71:99:2086,207,0
1	201947772	rs10800803	G	A	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.554;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=13.948;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=1.037;SB=-2.601e+01;SOR=2.653;VQSLOD=5.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,12:38:99:332,0,702
1	201969082	rs1130790	G	A	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.513;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.632;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.29;ReadPosRankSum=1.070;SB=-3.200e+01;SOR=1.230;VQSLOD=6.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,8:41:99:163,0,860
1	201970562	rs4332408	T	C	5009.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6203;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-2.858e+03;SOR=0.985;VQSLOD=5.69;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5038,361,0
1	201970748	rs4131469	G	A	1145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.050;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=1.220;SB=-5.280e+02;SOR=1.023;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,37:62:99:1174,0,680
1	201972167	rs16849539	G	A	51.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.45;ReadPosRankSum=1.012;SB=-9.732e-01;SOR=0.784;VQSLOD=8.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:15:80:80,0,333
1	201980119	rs2819361	C	G	371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-7.997e+01;SOR=2.494;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:400,30,0
1	201981218	rs11543979	C	G	2878.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-1.748e+03;SOR=0.848;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2907,211,0
1	201981354	rs56310296	T	C	1665.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-7.400e+02;SOR=1.038;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1694,129,0
1	201981355	rs55666208	G	C	1635.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-7.510e+02;SOR=0.941;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1664,123,0
1	201981862	rs2819362	T	C	1169.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-4.350e+02;SOR=1.739;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1198,93,0
1	202092360	rs3795595	G	A	1821.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-8.040e+02;SOR=1.421;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1850,138,0
1	202092415	rs3795596	A	G	2807.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-1.231e+03;SOR=1.455;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2836,208,0
1	202092580	rs7516762	T	C	4265.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-2.127e+03;SOR=0.876;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,129:129:99:4294,322,0
1	202096815	rs3820380	G	A	1326.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-4.660e+02;SOR=1.828;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1355,102,0
1	202103802	rs4342901	G	A	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-0.357;SB=0.00;SOR=1.270;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:240,0,129
1	202113835	rs4989100	T	G	489.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=0.586;SB=0.00;SOR=0.922;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:518,0,398
1	202119205	rs55813259	C	A	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.914;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=0.925;SB=0.00;SOR=0.990;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:411,0,302
1	202122783	rs11590076	C	A	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.370;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=1.324;SB=-2.657e-01;SOR=2.133;VQSLOD=6.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,11:36:99:326,0,719
1	202130754	rs3934648	T	C	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-0.100;SB=-3.200e+01;SOR=1.508;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:157,0,169
1	202155543	rs2993432	A	C	1141.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-5.890e+02;SOR=1.121;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1170,87,0
1	202156482	rs3010088	G	A	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.546;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.890;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-0.930;SB=-1.740e+02;SOR=0.198;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:361,0,351
1	202156628	rs3010089	A	C	772.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-2.061e+02;SOR=2.584;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:801,60,0
1	202163621	rs3120747	G	A	151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.929;SB=-1.270e+02;SOR=0.446;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:180,0,137
1	202194441	rs3010067	G	C	952.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-3.876e+01;SOR=5.058;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:981,72,0
1	202194508	rs149459287	AG	A	2460.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-6.740e+02;SOR=2.066;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:57:99:2498,169,0
1	202196931	rs1452070	G	A	747.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-1.871e+02;SOR=2.494;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:776,57,0
1	202266547	rs788827	C	T	2727.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-1.478e+03;SOR=0.867;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2756,202,0
1	202266607	rs788826	C	T	2810.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.112;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8937;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=0.616;SB=-1.687e+03;SOR=0.832;VQSLOD=3.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2839,169,0
1	202269752	rs788821	C	T	395.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=0.00;SOR=4.977;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:424,33,0
1	202274936	rs705762	T	C	2319.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-1.433e+03;SOR=0.693;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2348,169,0
1	202276494	rs896551	C	T	1119.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-3.630e+02;SOR=2.049;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1148,87,0
1	202283667	rs705770	A	G	659.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.583e+02;SOR=2.531;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:688,54,0
1	202287206	rs788795	T	C	2833.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-1.668e+03;SOR=0.859;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2862,208,0
1	202287537	rs788794	G	A	1168.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-5.720e+02;SOR=1.061;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1197,90,0
1	202287813	rs788793	T	C	1067.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=-4.940e+02;SOR=1.547;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1096,84,0
1	202288462	rs788792	C	A	286.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-1.115e+02;SOR=1.609;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:315,24,0
1	202318316	rs930734	A	C	2178.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-6.740e+02;SOR=2.206;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2207,172,0
1	202386075	rs2843413	T	C	2116.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-1.072e+03;SOR=1.162;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2145,154,0
1	202407414	.	A	G	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.324;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-0.246;SB=-2.080e+02;SOR=0.330;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:323,0,339
1	202408594	rs2293551	C	T	504.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-2.251e+02;SOR=1.244;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:533,39,0
1	202457784	rs3820374	T	A	1340.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4545;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-4.110e+02;SOR=2.093;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1369,99,0
1	202536848	rs2292489	C	T	2251.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.50;SB=-1.517e+03;SOR=0.770;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2280,166,0
1	202565747	rs138552846	AAAAC	A	640.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-3.477e+01;SOR=3.611;VQSLOD=7.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:678,36,0
1	202569831	rs12047787	G	A	767.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SB=0.00;SOR=6.184;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:796,60,0
1	202569877	rs1467120	G	A	440.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=0.00;SOR=5.136;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:469,36,0
1	202572105	rs55968420	GCC	G	2459.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;RPA=7,5;RU=C;SB=-1.075e+03;SOR=1.022;STR;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2497,163,0
1	202701170	.	G	A	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;DP=24;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.8015;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=0.000;QD=6.16;ReadPosRankSum=1.689;SB=-9.732e-01;SOR=1.302;VQSLOD=6.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:23:99:133,0,154
1	202703053	rs4310498	G	A	900.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.237;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-0.798;SB=-2.490e+02;SOR=0.900;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,32:63:99:929,0,801
1	202705455	rs1141109	G	C	1412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=2.471;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=1.964;SB=-8.280e+02;SOR=0.673;VQSLOD=7.68;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:51,57:108:99:1441,0,1228
1	202711350	rs6658451	T	C	380.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-8.097e+01;SOR=2.494;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:409,30,0
1	202711777	rs144222509	G	T	1255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.076;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.734;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.612;SB=-6.520e+02;SOR=0.556;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,47:108:99:1284,0,1622
1	202715244	.	G	GA	463.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;DP=36;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=1.285;POSITIVE_TRAIN_SITE;QD=13.25;RPA=8,9;RU=A;ReadPosRankSum=-1.235;SB=-2.010e+02;SOR=1.057;STR;VQSLOD=4.500e-03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,20:36:99:501,0,307
1	202715284	rs1141108	G	A	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.247;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=60.53;MQ0=0;MQRankSum=1.366;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-0.026;SB=-3.320e+02;SOR=0.767;VQSLOD=3.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,22:41:99:564,0,570
1	202718202	rs1892164	G	A	848.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.242;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-0.486;SB=-5.760e+02;SOR=0.502;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,35:59:99:877,0,556
1	202722277	rs4950742	G	A	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=0.712;SB=-3.401e+01;SOR=1.179;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:97:217,0,97
1	202827088	rs6687143	A	G	77.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.55;ReadPosRankSum=0.566;SB=0.00;SOR=0.188;VQSLOD=9.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:106,0,347
1	202827191	rs6663182	G	A	606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=5.703;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.289;SB=-5.600e+01;SOR=1.781;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,21:49:99:635,0,739
1	202827398	rs6687459	A	G	911.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.761;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.329;HaplotypeScore=6.6082;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=1.173;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=1.452;SB=-1.690e+02;SOR=1.038;VQSLOD=0.560;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,31:55:99:940,0,669
1	202878454	rs1539357	T	A	120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=1.481;SB=-9.732e-01;SOR=1.302;VQSLOD=8.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:149,0,378
1	202887129	.	T	C	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.797;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.04;ReadPosRankSum=-0.071;SB=-6.600e+01;SOR=0.509;VQSLOD=8.61;culprit=SOR	GT:AD:DP:GQ:PL	0/1:9,12:21:99:344,0,277
1	202887295	rs2275734	G	A	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.280;SB=-1.550e+02;SOR=1.075;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:349,0,527
1	202888947	rs3182429	T	C	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=-0.071;SB=-1.800e+02;SOR=0.722;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:417,0,590
1	202897431	rs10800882	A	G	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-0.413;SB=-4.276e+01;SOR=0.132;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:206,0,228
1	202911485	rs2275736	A	T	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.278;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=1.016;SB=0.00;SOR=0.693;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:198,0,193
1	202913950	rs35179235	A	T	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.549;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=-0.659;SB=-1.550e+02;SOR=0.637;VQSLOD=7.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,11:28:99:290,0,398
1	202915555	rs2275735	C	T	2113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.025;SB=-8.460e+02;SOR=0.660;VQSLOD=8.72;culprit=DP	GT:AD:DP:GQ:PL	0/1:63,76:139:99:2142,0,1822
1	202931839	rs2232854	G	A	1432.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.815;HaplotypeScore=2.8407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=1.446;SB=-5.420e+02;SOR=0.453;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,49:98:99:1461,0,1321
1	202931998	rs2232852	C	A	1102.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-3.240e+02;SOR=1.942;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1131,87,0
1	202933657	rs2232847	T	A	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.161;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=1.396;SB=-1.020e+02;SOR=0.110;VQSLOD=7.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:210,0,376
1	202933992	rs1418445	G	C	853.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-2.421e+02;SOR=2.387;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:882,63,0
1	202934044	rs2363768	A	G	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.08;ReadPosRankSum=-0.319;SB=0.00;SOR=1.609;VQSLOD=10.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:90:249,0,90
1	202934764	rs56932949	TC	T	502.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.46;SB=-2.360e+02;SOR=1.022;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:20:56:540,56,0
1	202935911	rs2232842	T	C	819.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.697;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.915;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.278;SB=-4.950e+02;SOR=0.628;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,31:70:99:848,0,899
1	202956236	rs870094	G	A	666.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.462;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=6.508;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=-0.364;SB=-2.980e+02;SOR=1.112;VQSLOD=7.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,26:71:99:695,0,1462
1	202977809	rs6678040	G	A	716.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.939;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=-0.076;SB=-3.580e+02;SOR=0.776;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,30:75:99:745,0,1339
1	202978032	rs1418444	C	G	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.449;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=-0.580;SB=-3.500e+01;SOR=0.874;VQSLOD=10.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:408,0,311
1	203004627	.	A	AC	1432.73	PASS	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.00;RPA=5,6;RU=C;SB=-5.680e+02;SOR=1.236;STR;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:41:99:1470,117,0
1	203004980	rs11340451	CT	C	462.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;RPA=2,1;RU=T;SB=0.00;SOR=4.977;STR;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:12:33:500,33,0
1	203006243	rs782805	A	G	1191.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-6.840e+02;SOR=0.793;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1220,90,0
1	203008174	rs61821060	G	C	2989.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-1.668e+03;SOR=0.896;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3018,220,0
1	203008286	rs10920553	C	G	1798.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-7.610e+02;SOR=1.460;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1827,132,0
1	203012705	rs7547566	C	G	3250.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-1.117e+03;SOR=1.796;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3279,238,0
1	203012906	rs4950908	G	A	493.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.24;SB=-2.431e+02;SOR=0.976;VQSLOD=6.19;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:39:522,39,0
1	203013845	.	G	C	1097.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.68;ReadPosRankSum=1.837;SB=-5.190e+02;SOR=0.614;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,43:94:99:1126,0,1352
1	203023122	rs2291691	A	C	1246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.978;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=1.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=-0.040;SB=-6.380e+02;SOR=0.780;VQSLOD=3.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,43:84:99:1275,0,1177
1	203023240	.	G	GGC	1081.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.992;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=1.067;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=0.182;SB=-3.010e+02;SOR=0.836;VQSLOD=4.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,22:45:99:1119,0,1185
1	203024421	rs12742983	A	T	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-1.109;SB=-1.765e+00;SOR=1.609;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:367,0,379
1	203025096	.	C	CT	52.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.03;RPA=14,15;RU=T;ReadPosRankSum=0.701;SB=-1.227e+01;SOR=0.576;STR;VQSLOD=6.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,6:29:90:90,0,358
1	203025209	rs11590950	G	C	929.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.141;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.084;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.539;SB=-4.470e+02;SOR=1.082;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,34:66:99:958,0,928
1	203026203	rs903362	T	G	506.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-4.276e+01;SOR=3.912;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:535,39,0
1	203026214	rs10753933	T	G	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=0.856;SB=-2.977e+01;SOR=1.061;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,11:14:80:360,0,80
1	203028711	rs4590732	C	G	518.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-0.143;SB=-3.500e+01;SOR=0.495;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:547,0,663
1	203030207	rs2270544	G	A	1015.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.749;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.958;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-0.662;SB=-6.040e+02;SOR=0.477;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,41:73:99:1044,0,858
1	203030685	rs2270543	T	C	707.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.063;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=1.246;SB=-3.370e+02;SOR=0.487;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,29:57:99:736,0,772
1	203032922	rs1416262	C	T	897.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=5.673;HaplotypeScore=1.5762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.076;SB=-5.480e+02;SOR=0.226;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,37:60:99:926,0,617
1	203036614	rs1389792	G	A	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.468;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-0.285;SB=0.00;SOR=0.465;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:286,0,426
1	203036757	rs2275354	T	C	1309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.225;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.066;SB=-5.250e+02;SOR=0.756;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,50:98:99:1338,0,1318
1	203040673	rs9803710	A	G	624.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.67;SB=-4.276e+01;SOR=4.294;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:653,48,0
1	203040740	rs11583155	T	C	1372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-2.131e+02;SOR=3.145;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1401,102,0
1	203040816	rs2270540	G	C	2420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-1.344e+03;SOR=1.058;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2449,175,0
1	203053768	rs903356	T	C	2067.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-1.113e+03;SOR=1.010;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2096,150,0
1	203098275	rs2228079	T	G	2722.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-1.619e+03;SOR=0.737;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2751,205,0
1	203098455	rs10920569	T	C	757.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-4.276e+01;SOR=4.615;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:786,60,0
1	203137784	rs34556384	A	ACT	4891.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;RPA=1,2;RU=CT;SB=-2.162e+03;SOR=0.982;STR;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:4929,277,0
1	203138304	rs33945931	C	T	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.619;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=-0.411;SB=-1.620e+02;SOR=1.256;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:480,0,347
1	203148633	rs4950927	A	G	2487.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-1.279e+03;SOR=0.968;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2516,187,0
1	203152801	rs880633	T	C	3215.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-1.268e+03;SOR=1.609;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3244,241,0
1	203153555	rs12128727	C	T	649.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=0.00;SOR=5.784;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:678,51,0
1	203153634	rs2071579	C	G	2118.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-5.530e+02;SOR=2.602;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2147,160,0
1	203154532	rs1538372	A	G	2842.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.79;SB=-3.590e+02;SOR=3.884;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2871,214,0
1	203155882	rs4950928	G	C	1038.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.70;SB=-4.176e+01;SOR=5.283;VQSLOD=3.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1067,78,0
1	203174864	rs4950932	T	C	879.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.581;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.127;SB=-2.030e+02;SOR=0.864;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,31:62:99:908,0,863
1	203174921	rs2486951	A	G	1153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.401;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.803;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.659;SB=-6.430e+02;SOR=0.801;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,46:87:99:1182,0,1145
1	203175107	rs2494296	A	C	460.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.595;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.980;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-1.044;SB=-1.090e+02;SOR=0.243;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:489,0,641
1	203188656	.	G	A	780.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.483;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.61;ReadPosRankSum=0.439;SB=-1.730e+02;SOR=0.712;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,26:47:99:809,0,631
1	203188692	rs2486958	A	C	770.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.538;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.926;SB=-4.570e+02;SOR=0.538;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,32:65:99:799,0,837
1	203191262	rs2244385	C	G	592.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.71;ReadPosRankSum=0.525;SB=0.00;SOR=1.609;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,17:25:99:621,0,254
1	203192448	rs3216011	GC	G	406.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;DB;DP=30;ExcessHet=3.0103;FS=13.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;RPA=4,3;RU=C;ReadPosRankSum=-2.284;SB=-1.603e+02;SOR=0.020;STR;VQSLOD=5.53;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,13:30:99:444,0,444
1	203194008	rs2486963	A	G	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-0.389;SB=-4.176e+01;SOR=0.169;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:165,0,197
1	203311736	rs1891180	T	C	404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.821;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.022;SB=-2.901e+01;SOR=1.981;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:433,0,351
1	203317162	rs7543148	C	T	4449.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-2.789e+03;SOR=0.804;VQSLOD=5.44;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4478,328,0
1	203322521	rs6658996	G	C	362.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-3.876e+01;SOR=3.258;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:391,30,0
1	203452226	rs2233724	T	C	567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.128;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.823;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=1.005;SB=-1.360e+02;SOR=1.352;VQSLOD=7.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,21:66:99:596,0,1198
1	203456098	rs1050083	T	C	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-2.063;SB=0.00;SOR=0.446;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:172,0,199
1	203465392	rs28446858	T	G	1479.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.848;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.608;HaplotypeScore=4.5137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=0.099;SB=-7.130e+02;SOR=0.509;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,55:112:99:1508,0,1534
1	203465396	rs2242199	T	C	1437.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.675;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=1.626;HaplotypeScore=2.6112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-0.117;SB=-5.810e+02;SOR=0.927;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,56:109:99:1466,0,1414
1	203465570	rs2242198	C	G	390.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-1.653e+02;SOR=1.609;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:30:419,30,0
1	203466349	rs2306152	G	A	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.624;SB=-3.300e+01;SOR=0.693;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:347,0,331
1	203467660	rs6668135	G	A	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=-0.141;SB=-1.765e+00;SOR=1.179;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:146,0,243
1	203468165	rs2306151	C	A	405.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.852;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.328;SB=-8.700e+01;SOR=0.776;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:434,0,381
1	203472112	rs79523790	T	C	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.859;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.25;ReadPosRankSum=-0.852;SB=-1.240e+02;SOR=0.706;VQSLOD=8.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,12:35:99:282,0,599
1	203472941	rs2279127	A	G	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-0.061;SB=-3.500e+01;SOR=0.693;VQSLOD=10.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:215,0,197
1	203626364	rs7544854	C	G	376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=0.00;SOR=4.804;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:405,30,0
1	203652444	rs1419114	A	G	2627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-1.618e+03;SOR=0.815;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2656,199,0
1	203652683	rs4951369	C	G	368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.05;SB=0.00;SOR=4.804;VQSLOD=8.10;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,10:10:30:397,30,0
1	203667141	rs12030160	T	G	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.284;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=-1.206;SB=0.00;SOR=0.223;VQSLOD=9.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:124,0,315
1	203667409	rs2228445	T	C	2895.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.845e+03;SOR=0.802;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2924,208,0
1	203667577	rs139986068	TA	T	488.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;DB;DP=32;ExcessHet=3.0103;FS=8.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;RPA=4,3;RU=A;ReadPosRankSum=1.183;SB=-2.103e+01;SOR=3.056;STR;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,18:32:99:526,0,376
1	203677250	rs3753036	G	A	763.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.044;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=2.260;SB=-3.390e+02;SOR=1.063;VQSLOD=7.60;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:41,29:70:99:792,0,1036
1	203679934	rs2032018	A	G	1519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.528;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.765;HaplotypeScore=1.7870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=0.611;SB=-6.320e+02;SOR=0.591;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,53:107:99:1548,0,1426
1	203689936	rs4951112	C	G	1136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.328;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=5.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=-1.567;SB=-3.310e+02;SOR=0.210;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,37:56:99:1165,0,522
1	203698627	rs2365862	C	T	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=1.876;SB=-4.176e+01;SOR=0.293;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:212,0,167
1	203698672	.	CA	C	141.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.67;RPA=18,17;RU=A;ReadPosRankSum=-0.609;SB=-4.417e+01;SOR=0.495;STR;VQSLOD=7.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,14:28:99:179,0,165
1	203740615	rs3737976	T	C	559.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.339;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-0.643;SB=-3.010e+02;SOR=0.830;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,22:49:99:588,0,807
1	203741368	rs3737973	C	A	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.435;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-0.277;SB=-6.800e+01;SOR=0.793;VQSLOD=10.38;culprit=SOR	GT:AD:DP:GQ:PL	0/1:11,12:23:99:352,0,320
1	203743122	rs3820194	G	A	2334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.412;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=1.146;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-0.976;SB=-1.415e+03;SOR=0.586;VQSLOD=6.55;culprit=DP	GT:AD:DP:GQ:PL	0/1:96,90:186:99:2363,0,2447
1	203743653	rs3766748	C	T	1340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.758;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.798;HaplotypeScore=1.9464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-0.913;SB=-7.830e+02;SOR=0.562;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,47:89:99:1369,0,1236
1	203766827	rs872032	T	C	778.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.523;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=21.714;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.245;SB=-2.110e+02;SOR=2.162;VQSLOD=4.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,29:55:99:807,0,769
1	203786364	.	C	G	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.17;ReadPosRankSum=-0.651;SB=-1.060e+02;SOR=0.892;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:255,0,129
1	203787700	rs4951260	T	C	1171.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-2.221e+02;SOR=2.964;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1200,87,0
1	203803016	rs6694647	A	G	2497.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=-5.270e+02;SOR=2.964;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2526,184,0
1	203818973	rs41299639	C	A	1315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.947;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=1.046;SB=-6.620e+02;SOR=0.640;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,48:105:99:1344,0,1652
1	203819177	.	T	C	636.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.728;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.464;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.16;ReadPosRankSum=1.361;SB=-1.790e+02;SOR=0.400;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,20:42:99:665,0,662
1	203821200	rs7512877	G	A	495.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6274;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-1.165e+02;SOR=2.584;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:524,39,0
1	203821314	rs41264265	G	A	851.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.297;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.54;MQ0=0;MQRankSum=0.168;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.996;SB=-2.720e+02;SOR=0.580;VQSLOD=2.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,33:76:99:880,0,1110
1	204005962	.	C	CA	137.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.74;RPA=13,14;RU=A;ReadPosRankSum=0.419;SB=0.00;SOR=0.330;STR;VQSLOD=9.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,9:24:99:175,0,257
1	204006095	rs41264273	A	G	1723.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.069;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.752;HaplotypeScore=5.1827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.270;SB=-5.100e+02;SOR=0.976;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:68,62:130:99:1752,0,1849
1	204006451	rs41264275	G	A	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.099;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=1.534;SB=-5.150e-01;SOR=2.303;VQSLOD=5.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:146,0,362
1	204006538	rs4951291	T	C	440.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.91;SB=-1.205e+02;SOR=2.147;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:469,36,0
1	204006597	rs4951039	G	A	687.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-2.271e+02;SOR=1.931;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:716,54,0
1	204010389	rs10437107	G	T	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=-0.723;SB=-9.732e-01;SOR=1.981;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:124,0,212
1	204081655	rs34093119	A	ACACACT	1761.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=64.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-1.225e+02;SOR=3.912;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1799,90,0
1	204081892	rs2250538	C	T	1068.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.579;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.369;SB=-5.670e+02;SOR=0.730;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,45:89:99:1097,0,1318
1	204082002	rs2293336	C	T	753.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.033;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.853;SB=-3.190e+02;SOR=0.983;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,25:57:99:782,0,948
1	204082323	rs760312	C	T	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.100;SB=0.00;SOR=0.693;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:165,0,152
1	204085609	rs7551756	A	G	1637.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.209;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=2.405;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=1.733;SB=-8.380e+02;SOR=0.487;VQSLOD=7.66;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:62,56:118:99:1666,0,1764
1	204091245	rs2692018	G	A	108.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=0.522;SB=-4.176e+01;SOR=0.074;VQSLOD=9.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,6:11:99:137,0,176
1	204094902	rs2692010	T	C	536.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-3.876e+01;SOR=4.047;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:565,42,0
1	204103618	rs2293335	G	A	2343.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-2.680e+02;SOR=3.981;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2372,181,0
1	204110334	rs10793755	A	G	1968.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-5.730e+02;SOR=2.531;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1997,156,0
1	204120952	rs3737655	G	T	594.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.175;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=-0.509;SB=-3.540e+02;SOR=0.880;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,23:38:99:623,0,392
1	204124370	rs3215332	AC	A	649.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DB;DP=39;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.10;RPA=5,4;RU=C;ReadPosRankSum=0.543;SB=-2.280e+02;SOR=1.347;STR;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,21:39:99:687,0,514
1	204124648	rs2887284	C	A	190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-0.619;SB=0.00;SOR=0.495;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:219,0,322
1	204124865	rs2368564	C	T	739.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.776;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.855;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=-0.462;SB=-4.260e+02;SOR=0.560;VQSLOD=7.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,30:84:99:768,0,1603
1	204125089	rs3795575	G	A	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=0.413;SB=-1.330e+02;SOR=0.273;VQSLOD=7.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,10:29:99:286,0,600
1	204126378	rs3730102	G	A	644.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.014;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=21.891;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=1.197;SB=-1.726e-02;SOR=4.605;VQSLOD=2.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,20:46:99:673,0,667
1	204129554	rs1917539	T	C	364.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.214;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=-0.342;SB=0.00;SOR=0.892;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:393,0,284
1	204131186	rs5705	T	G	688.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.490;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.858;SB=-2.970e+02;SOR=0.711;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,26:60:99:717,0,914
1	204161947	rs12998	C	T	1278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.134;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-1.550;SB=-7.960e+02;SOR=0.745;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,54:113:99:1307,0,1598
1	204162142	rs10158616	G	T	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=1.276;SB=0.00;SOR=0.473;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:198,0,272
1	204167398	rs72749749	C	T	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=1.579;SB=0.00;SOR=1.085;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:210,0,123
1	204167672	rs3795573	T	C	818.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.977;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=1.571;SB=-3.830e+02;SOR=0.543;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,35:71:99:847,0,944
1	204198209	rs3795571	A	G	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.28;ReadPosRankSum=-0.147;SB=-9.000e+01;SOR=0.586;VQSLOD=9.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:99:169,0,285
1	204199614	rs10900562	C	T	666.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.602;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=0.357;SB=-2.030e+02;SOR=0.602;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:695,0,829
1	204210750	rs4412655	C	A	596.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.646;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.012;SB=-2.270e+02;SOR=0.709;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:625,0,782
1	204210791	rs4951325	G	A	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.905;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-0.908;SB=-1.780e+02;SOR=0.820;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,14:37:99:451,0,671
1	204214975	rs67340416	TACACAC	T	629.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQ0=0;MQRankSum=1.171;POSITIVE_TRAIN_SITE;QD=13.12;RPA=15,12;RU=AC;ReadPosRankSum=-0.261;SB=-7.600e+01;SOR=0.540;STR;VQSLOD=3.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,11:31:99:667,0,938
1	204216410	rs4951329	C	T	793.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.666;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=7.772;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=1.667;SB=-2.150e+02;SOR=1.574;VQSLOD=5.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:61,29:90:99:822,0,1647
1	204216468	rs4512713	C	T	1111.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.839;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=14.028;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-0.950;SB=-4.770e+02;SOR=1.159;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,43:95:99:1140,0,1374
1	204216601	rs4288652	G	A	1094.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.765;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=8.530;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-1.299;SB=-3.510e+02;SOR=1.675;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,40:71:99:1123,0,915
1	204216762	rs4245724	C	T	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-1.506;SB=-7.100e+01;SOR=0.223;VQSLOD=7.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,7:15:99:167,0,255
1	204218475	.	C	T	851.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.698;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.212;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.44;ReadPosRankSum=0.315;SB=-5.220e+02;SOR=0.636;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,34:59:99:880,0,662
1	204218633	rs10900567	G	C	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=0.430;SB=-1.720e+02;SOR=0.569;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:386,0,554
1	204218714	rs12041137	T	C	489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=0.00;SOR=5.283;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:518,39,0
1	204219559	rs3795570	T	G	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.668;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.082;SB=0.00;SOR=0.495;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:378,0,474
1	204219850	rs4951331	G	A	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.731;SB=-2.070e+02;SOR=0.446;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,19:39:99:552,0,554
1	204230581	rs3795569	G	A	301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=1.274;SB=-6.600e+01;SOR=0.765;VQSLOD=9.77;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,12:20:99:330,0,233
1	204234196	rs5780223	G	GGT	1411.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;DB;DP=101;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;RPA=8,9;RU=GT;ReadPosRankSum=1.537;SB=-4.830e+02;SOR=0.810;STR;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,40:101:99:1449,0,1551
1	204234222	rs4076020	T	C	1119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.861;HaplotypeScore=4.4409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=1.374;SB=-4.460e+02;SOR=0.836;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,42:87:99:1148,0,1179
1	204234225	rs4073136	G	A	1088.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=1.165;SB=-3.480e+02;SOR=0.734;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,40:84:99:1117,0,1191
1	204237416	rs10900571	C	T	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=-0.274;SB=-3.740e+02;SOR=0.735;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,27:73:99:694,0,1230
1	204379617	rs3014626	T	C	2900.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-1.433e+03;SOR=1.153;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2929,211,0
1	204409281	rs3014631	C	G	2207.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.97;SB=-3.540e+02;SOR=3.511;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2236,169,0
1	204413297	rs2292459	C	T	3272.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.73;SB=-1.622e+03;SOR=1.059;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3301,244,0
1	204413299	rs2292460	G	A	3243.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-1.549e+03;SOR=1.090;VQSLOD=4.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3272,244,0
1	204418198	rs2271427	T	C	683.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=-3.330e+02;SOR=1.270;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:51:712,51,0
1	204418889	rs2999492	C	T	360.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-8.097e+01;SOR=2.670;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:389,30,0
1	204418939	rs3014637	C	T	619.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-2.241e+02;SOR=1.828;VQSLOD=7.25;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,21:21:48:648,48,0
1	204426028	.	ACACACACC	A	1397.73	PASS	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.65;MQ0=0;QD=27.59;SB=0.00;SOR=5.994;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:20:57:1435,57,0
1	204426030	.	ACACACC	A	1283.73	PASS	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.79;MQ0=0;QD=33.78;SB=0.00;SOR=5.994;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:1321,57,0
1	204426052	rs2999490	A	C	1056.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.95;SB=-7.197e+01;SOR=4.479;VQSLOD=4.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1085,84,0
1	204429212	rs5013460	A	T	671.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-2.031e+02;SOR=2.200;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:700,51,0
1	204429213	rs5013459	T	G	686.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-2.061e+02;SOR=2.200;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:715,51,0
1	204429215	rs5013458	T	A	684.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-2.001e+02;SOR=2.200;VQSLOD=6.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,21:21:51:713,51,0
1	204429216	rs5013457	A	G	671.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-2.061e+02;SOR=2.200;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:700,51,0
1	204429838	rs2271414	C	G	4390.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;SB=-1.565e+03;SOR=1.743;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:129:99:4419,322,0
1	204433093	rs2271415	A	C	2972.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-5.280e+02;SOR=3.312;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3001,220,0
1	204433511	.	T	TC	1927.73	PASS	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.38;RPA=1,2;RU=C;SB=-2.561e+02;SOR=3.467;STR;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1965,132,0
1	204434277	rs2942149	T	C	651.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-2.171e+02;SOR=1.931;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:680,48,0
1	204438334	rs1124777	C	T	4047.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-2.251e+03;SOR=0.949;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,129:129:99:4076,298,0
1	204438643	rs1553921	G	T	3651.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-1.921e+03;SOR=0.885;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3680,277,0
1	204494756	rs139769069	G	GT	78.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;DB;DP=42;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.25;RPA=14,15;RU=T;ReadPosRankSum=-0.488;SB=-1.133e+01;SOR=1.096;STR;VQSLOD=4.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,8:42:99:116,0,466
1	204495595	.	G	GT	187.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=0.242;POSITIVE_TRAIN_SITE;QD=7.82;RPA=14,15;RU=T;ReadPosRankSum=0.058;SB=0.00;SOR=0.859;STR;VQSLOD=3.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,13:31:99:225,0,151
1	204505976	rs35493922	GA	G	447.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.34;RPA=7,6;RU=A;SB=-3.277e+01;SOR=4.294;STR;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:485,51,0
1	204506107	rs4245738	C	T	1783.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-9.200e+02;SOR=1.071;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1812,135,0
1	204512100	rs4252717	T	C	1326.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-2.840e+02;SOR=2.948;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1355,99,0
1	204515863	rs2290855	C	T	364.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.28;SB=0.00;SOR=4.804;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:393,30,0
1	204516025	rs2290854	A	G	1770.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-7.830e+02;SOR=1.412;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1799,129,0
1	204518842	rs4245739	C	A	1131.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-5.190e+02;SOR=1.308;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1160,84,0
1	204586805	rs3789046	G	A	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=-1.250;SB=-4.176e+01;SOR=0.180;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:239,0,251
1	204586812	rs3789045	C	T	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.485;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.819;SB=-1.765e+00;SOR=1.609;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:286,0,311
1	204587047	rs11588857	G	A	1012.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.562;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.316;SB=-6.240e+02;SOR=0.622;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1041,0,1212
1	204587240	rs3747632	G	A	849.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.020;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=0.837;SB=-5.070e+02;SOR=0.593;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,32:57:99:878,0,721
1	204587569	rs3747631	G	C	848.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.708;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=-0.061;SB=-5.840e+02;SOR=0.564;VQSLOD=7.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,37:91:99:877,0,1633
1	204588140	rs3747630	G	A	1068.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.053;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-0.318;SB=-5.280e+02;SOR=0.689;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,37:81:99:1097,0,1235
1	204589101	rs3789044	G	A	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.67;ReadPosRankSum=0.435;SB=-3.300e+01;SOR=0.307;VQSLOD=9.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:167,0,316
1	204913271	rs12061847	C	G	398.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-0.910;SB=-1.730e+02;SOR=0.527;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:427,0,398
1	204915393	rs2595960	A	G	1629.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.198;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.673;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-0.556;SB=-8.670e+02;SOR=0.472;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,57:99:99:1658,0,1139
1	204921258	rs12141283	A	G	868.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.892;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=6.493;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=1.301;SB=-4.240e+02;SOR=1.134;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,34:68:99:897,0,912
1	204943285	rs2595945	A	T	1661.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-5.150e+02;SOR=2.259;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1690,129,0
1	204943947	rs2246662	C	A	800.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.758;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.256;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=0.267;SB=-2.810e+02;SOR=1.085;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,28:60:99:829,0,832
1	204943991	rs2246661	C	T	579.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.049;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.199;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.114;SB=-2.780e+02;SOR=0.521;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,24:45:99:608,0,582
1	204943992	rs2794861	A	G	1415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-5.520e+02;SOR=1.714;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1444,105,0
1	204954993	rs2278795	A	G	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.139;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.817;SB=0.00;SOR=0.793;VQSLOD=10.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:304,0,297
1	204955319	rs11240324	G	A	514.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.643;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=1.058;SB=-3.301e+01;SOR=0.826;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:543,0,477
1	204955329	rs11240325	A	G	496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.049;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.163;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=1.551;SB=-1.765e+00;SOR=1.828;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:525,0,431
1	204960239	rs3820336	C	T	849.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-3.130e+02;SOR=1.781;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:878,63,0
1	204966428	rs2802808	C	G	487.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.709;HaplotypeScore=5.7990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=1.025;SB=-2.650e+02;SOR=0.747;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,18:41:99:516,0,667
1	204966690	rs2794858	G	A	1412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-5.780e+02;SOR=1.455;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1441,105,0
1	204966749	rs2595944	A	G	792.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-1.055e+02;SOR=3.258;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:821,60,0
1	204978445	rs372036802	G	GCTT	394.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.16;RPA=1,2;RU=CTT;ReadPosRankSum=0.162;SB=-9.500e+01;SOR=1.830;STR;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,8:25:99:432,0,837
1	204978533	rs1530745	A	G	1084.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=-5.920e+02;SOR=1.121;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1113,84,0
1	204978643	rs1530744	C	A	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.122;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.699;SB=-2.650e+02;SOR=0.509;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,21:51:99:611,0,784
1	205027561	rs9787409	G	T	304.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.165e+02;SOR=1.609;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:333,27,0
1	205027737	rs2275697	G	A	1423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-4.610e+02;SOR=1.981;VQSLOD=6.92;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1452,108,0
1	205028152	.	A	AC	1438.73	PASS	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;RPA=3,4;RU=C;SB=-2.041e+02;SOR=3.442;STR;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1476,111,0
1	205028663	.	C	A	419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.216;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.038;SB=-2.520e+02;SOR=0.801;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,18:42:99:448,0,689
1	205028823	.	A	AG	1201.73	PASS	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;RPA=3,4;RU=G;SB=-5.250e+02;SOR=1.044;STR;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:35:93:1239,93,0
1	205031116	rs2229866	C	T	1644.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.27;SB=-8.250e+02;SOR=1.067;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1673,123,0
1	205031449	rs7545698	A	G	787.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-1.145e+02;SOR=3.160;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:816,60,0
1	205033283	rs1470637	G	A	499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-8.297e+01;SOR=3.258;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:528,39,0
1	205033374	rs2305277	T	C	1096.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.64;SB=-4.900e+02;SOR=1.609;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:81:1125,81,0
1	205034434	rs3901740	G	T	1944.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=-7.440e+02;SOR=1.946;VQSLOD=7.09;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1973,147,0
1	205034488	rs4460698	A	G	1040.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=-1.245e+02;SOR=3.981;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1069,81,0
1	205035455	rs16937	A	G	410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.23;SB=0.00;SOR=5.136;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:439,36,0
1	205036386	.	T	A	556.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;DP=41;Dels=0.00;ExcessHet=3.0103;FS=5.348;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.58;ReadPosRankSum=1.151;SB=-8.800e+01;SOR=1.708;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,19:41:99:585,0,699
1	205041158	rs2229868	C	T	987.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-4.580e+02;SOR=1.284;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1016,75,0
1	205052939	rs4950979	G	A	2845.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-1.483e+03;SOR=1.061;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2874,211,0
1	205053219	rs4951168	C	T	4166.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-2.094e+03;SOR=1.051;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4195,304,0
1	205069404	rs11240356	G	A	1658.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.30;SB=-7.200e+02;SOR=1.524;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1687,120,0
1	205070522	rs11240357	C	T	374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=0.00;SOR=4.804;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:403,30,0
1	205070573	rs11240358	G	A	1007.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=0.00;SOR=6.666;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1036,81,0
1	205074018	rs6683762	T	C	413.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=0.00;SOR=4.977;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:442,33,0
1	205091105	rs12033568	G	C	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=0.00;SOR=5.670;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:628,48,0
1	205116635	rs11367	A	T	2007.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-7.900e+02;SOR=1.721;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2036,150,0
1	205119981	rs3851295	C	T	4967.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-2.458e+03;SOR=1.143;VQSLOD=5.35;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,158:158:99:4996,367,0
1	205130413	rs3851294	A	G	1510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-6.770e+02;SOR=1.519;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1539,117,0
1	205131059	rs34299060	G	GAC	1274.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.65;RPA=5,6;RU=AC;SB=-3.350e+02;SOR=2.147;STR;VQSLOD=6.25;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,28:29:84:1312,84,0
1	205272926	rs1106201	C	T	487.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=2.038;SB=-2.640e+02;SOR=0.582;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:516,0,487
1	205272983	rs1106202	C	G	624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=-0.496;SB=-3.110e+02;SOR=0.776;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,21:41:99:653,0,660
1	205274174	rs10793728	A	G	196.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.192;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=-1.341;SB=0.00;SOR=0.346;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:225,0,456
1	205275061	rs4951194	C	T	486.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;SB=0.00;SOR=5.283;VQSLOD=7.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:515,39,0
1	205275206	rs4951195	A	T	1911.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-7.200e+02;SOR=1.733;VQSLOD=7.05;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1940,147,0
1	205275207	rs4951196	G	T	1917.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-6.980e+02;SOR=1.733;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1946,147,0
1	205275421	rs4951197	A	G	2220.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-8.650e+02;SOR=1.644;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2249,163,0
1	205306590	rs3210952	G	A	301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.320;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.909;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=1.729;SB=-1.730e+02;SOR=0.223;VQSLOD=7.25;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,14:25:99:330,0,293
1	205312280	rs7549293	C	G	364.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.933;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=-2.112;SB=0.00;SOR=1.739;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:393,0,149
1	205312767	rs7526603	G	T	317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.545;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.763;SB=-6.200e+01;SOR=1.022;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:346,0,391
1	205325609	rs2298250	C	A	988.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.174;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.865;HaplotypeScore=3.3614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.162;SB=-6.950e+02;SOR=0.570;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,42:76:99:1017,0,851
1	205385498	rs6688045	C	T	2116.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-1.102e+03;SOR=1.000;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2145,160,0
1	205389460	rs16855560	T	C	458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=-0.468;SB=-3.976e+01;SOR=0.330;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:487,0,319
1	205492756	rs7529442	A	G	811.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.763;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=4.931;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-1.144;SB=-3.850e+02;SOR=0.922;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,29:66:99:840,0,1199
1	205493545	rs41264889	C	T	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.679;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-0.840;SB=-3.300e+01;SOR=0.387;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:27:99:309,0,535
1	205494508	rs12126276	G	A	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=-1.047;SB=0.00;SOR=1.609;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:308,0,126
1	205494512	rs12122797	A	G	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=-1.047;SB=0.00;SOR=1.609;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:320,0,125
1	205495392	rs2297837	A	G	1112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.131;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=4.087;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.880;SB=-6.430e+02;SOR=0.375;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,40:88:99:1141,0,1419
1	205495976	rs1544154	A	G	2926.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-1.146e+03;SOR=1.609;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2955,220,0
1	205498843	rs45479796	G	T	1531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.486;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=1.568;HaplotypeScore=2.6003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-1.541;SB=-8.850e+02;SOR=0.731;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,57:105:99:1560,0,1278
1	205499355	rs12042887	C	A	869.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.729;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=18.499;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=0.091;SB=-9.700e+01;SOR=3.690;VQSLOD=4.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,27:39:99:898,0,258
1	205499495	rs12035825	G	A	1492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.656;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=3.512;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=-0.027;SB=-8.720e+02;SOR=0.764;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,57:109:99:1521,0,1180
1	205499577	rs6668356	C	G	2337.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-6.560e+02;SOR=2.269;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2366,172,0
1	205499595	rs41264891	G	A	946.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.848;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=5.045;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-1.167;SB=-1.140e+02;SOR=1.734;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:57:99:975,0,738
1	205499611	rs41264893	C	T	732.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.641;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=5.596;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.363;SB=-9.700e+01;SOR=1.888;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,25:47:99:761,0,665
1	205499701	rs12748821	T	C	447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.486;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.39;ReadPosRankSum=-1.353;SB=-2.520e+02;SOR=0.538;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,15:20:99:476,0,111
1	205499921	rs11240505	C	G	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=0.182;SB=-1.270e+02;SOR=1.022;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:368,0,169
1	205555145	rs7531623	G	A	335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.467;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=0.281;SB=-6.800e+01;SOR=0.914;VQSLOD=10.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:364,0,141
1	205561494	rs72128490	CTCT	C	786.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.75;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=0.00;SOR=5.784;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:824,51,0
1	205568213	rs2282449	C	T	1289.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=-5.100e+02;SOR=1.880;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:96:1318,96,0
1	205568390	rs2282450	T	A	1669.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-7.080e+02;SOR=1.569;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1698,123,0
1	205568438	rs2282451	G	T	1341.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.73;SB=-2.820e+02;SOR=3.003;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1370,102,0
1	205589574	rs1064406	C	T	1282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.497;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=3.921;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-0.626;SB=-7.900e+02;SOR=0.393;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,49:92:99:1311,0,1107
1	205615791	rs6673283	A	G	1577.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.758;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.742;SB=-7.750e+02;SOR=0.826;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,64:109:99:1606,0,1199
1	205630893	rs3761916	A	G	865.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.85;SB=-3.260e+02;SOR=1.942;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:63:894,63,0
1	205739266	rs708723	C	T	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=0.347;SB=-2.701e+01;SOR=1.911;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:370,0,306
1	205739396	rs823139	T	G	1469.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-6.720e+02;SOR=1.251;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1498,108,0
1	205740426	.	C	CA	99.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.67;RPA=14,15;RU=A;ReadPosRankSum=0.207;SB=-3.077e+01;SOR=0.223;STR;VQSLOD=8.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,7:13:56:137,0,56
1	205740478	.	G	A	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-1.005;SB=-6.200e+01;SOR=0.693;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,13:36:99:365,0,743
1	205741816	rs823142	A	T	344.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=0.00;SOR=4.804;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:373,30,0
1	205744218	rs1572931	C	T	107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-1.559;SB=-2.701e+01;SOR=0.693;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:136,0,144
1	205764640	rs823156	G	A	638.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.943;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.213;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-1.933;SB=-3.680e+02;SOR=0.416;VQSLOD=7.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,25:43:99:667,0,492
1	205765795	rs823157	T	A	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=5.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=-0.679;SB=-1.765e+00;SOR=3.611;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:55:288,0,55
1	205765907	.	C	T	107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.469;SB=-4.600e+01;SOR=0.746;VQSLOD=5.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,7:34:99:136,0,679
1	205766159	rs5780304	CA	C	886.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;RPA=3,2;RU=A;ReadPosRankSum=0.667;SB=-4.200e+02;SOR=0.689;STR;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,27:68:99:924,0,1191
1	205768309	rs4396169	C	T	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=-1.465;SB=0.00;SOR=1.085;VQSLOD=10.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:204,0,135
1	205779231	rs11240569	G	A	769.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.452;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.166;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-0.802;SB=-3.250e+02;SOR=0.518;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:798,0,514
1	205798033	rs823085	G	A	411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.941;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=-0.563;SB=0.00;SOR=1.493;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:440,0,185
1	205809642	rs10900525	G	C	1078.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.274;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.947;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-1.289;SB=-3.780e+02;SOR=0.900;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1107,0,1067
1	205811828	rs4951025	A	T	1281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.085;SB=-7.610e+02;SOR=0.684;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,50:98:99:1310,0,1189
1	205812614	rs960603	C	T	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-0.154;SB=0.00;SOR=0.693;VQSLOD=10.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:198,0,206
1	205812912	rs7518979	A	G	1670.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.611;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.653;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.672;SB=-9.380e+02;SOR=0.765;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:65,63:128:99:1699,0,1610
1	205813677	rs4369285	T	C	255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-2.099;SB=-1.710e+02;SOR=0.223;VQSLOD=7.73;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,10:17:99:284,0,201
1	205814497	rs1891460	T	C	1404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=1.253;SB=-7.480e+02;SOR=0.669;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:73,54:127:99:1433,0,1877
1	205814695	rs71633564	A	G	930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.394;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.205;SB=-3.850e+02;SOR=0.580;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,36:65:99:959,0,795
1	205817018	rs11540015	T	C	258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=50.60;MQ0=0;MQRankSum=1.319;POSITIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=-0.180;SB=-8.700e+01;SOR=0.446;VQSLOD=3.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,11:29:99:287,0,529
1	205819039	rs11540016	C	T	3117.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-1.736e+03;SOR=0.979;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3146,232,0
1	205819104	rs11540014	G	A	2981.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.95;SB=-1.794e+03;SOR=0.880;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3010,223,0
1	205888272	rs7366689	T	C	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.023;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.123;SB=0.00;SOR=0.602;VQSLOD=10.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:313,0,337
1	205890679	rs12759719	T	C	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.993;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.35;ReadPosRankSum=-0.340;SB=-1.290e+02;SOR=0.653;VQSLOD=9.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,9:25:99:212,0,343
1	205896112	.	C	T	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.737;SB=-1.290e+02;SOR=0.798;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,18:42:99:480,0,751
1	205896475	rs7366204	C	T	829.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.717;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.902;SB=-3.860e+02;SOR=0.723;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,33:68:99:858,0,1009
1	205896531	.	A	AT	1056.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.58;ReadPosRankSum=-0.369;SB=-3.610e+02;SOR=0.551;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,25:44:99:1094,0,691
1	205896948	rs3811424	A	G	956.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.966;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=13.645;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=-0.285;SB=-2.657e-01;SOR=3.794;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,28:53:99:985,0,768
1	206230958	rs28632197	G	A	691.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.934;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=8.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.365;SB=-4.810e+02;SOR=0.191;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,30:63:99:720,0,971
1	206230986	rs28676508	G	A	629.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=11.460;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=1.159;SB=-3.400e+02;SOR=0.824;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,27:60:99:658,0,885
1	206231152	rs28529127	G	A	633.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=5.759;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-0.671;SB=-2.870e+02;SOR=0.815;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,24:53:99:662,0,861
1	206231203	rs28415467	G	A	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.297;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.527;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=1.621;SB=-3.460e+02;SOR=0.407;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,22:44:99:541,0,587
1	206231259	rs33985287	A	G	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.475;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.203;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=-0.308;SB=-8.297e+01;SOR=0.089;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:390,0,368
1	206231264	rs33933482	G	A	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.572;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=-1.023;SB=-7.497e+01;SOR=0.105;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:389,0,337
1	206317568	rs73074812	G	A	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.897;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=0.165;SB=-1.830e+02;SOR=0.105;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:290,0,292
1	206327540	.	G	GAA	2172.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;DP=92;ExcessHet=3.0103;FS=3.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.14;RPA=1,3;RU=A;ReadPosRankSum=-0.154;SB=-1.057e+03;SOR=0.482;STR;VQSLOD=4.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,47:92:99:2210,0,1971
1	206327661	.	C	T	1027.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.361;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.52;ReadPosRankSum=-1.783;SB=-4.880e+02;SOR=0.616;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,37:76:99:1056,0,976
1	206331272	rs372706283	T	G	707.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.642;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.15;ReadPosRankSum=-0.557;SB=-3.630e+02;SOR=0.566;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,25:39:99:736,0,381
1	206567165	rs2480376	T	A	274.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.367;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=-1.881;QD=4.29;ReadPosRankSum=-0.951;SB=-5.150e-01;SOR=0.836;VQSLOD=0.734;culprit=QD	GT:AD:DP:GQ:PL	0/1:51,13:64:99:303,0,1738
1	206603535	rs2297539	G	A	1624.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-9.860e+02;SOR=0.892;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1653,120,0
1	206610544	.	G	A	277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.89;ReadPosRankSum=1.059;SB=-3.301e+01;SOR=0.693;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:306,0,303
1	206623685	rs12725078	G	T	2089.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.353;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.640;HaplotypeScore=3.6937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=1.545;SB=-7.520e+02;SOR=0.838;VQSLOD=7.27;culprit=DP	GT:AD:DP:GQ:PL	0/1:82,69:151:99:2118,0,2296
1	206623952	rs2483060	T	C	395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.535;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-0.231;SB=0.00;SOR=0.569;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:424,0,497
1	206626779	rs2483059	A	G	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.501;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=2.004;SB=-9.732e-01;SOR=1.765;VQSLOD=7.10;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,10:26:99:328,0,491
1	206631518	rs10864212	G	T	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.497;SB=-4.076e+01;SOR=0.160;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:138,0,179
1	206634429	rs17018890	A	G	539.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=2.303;SB=-2.550e+02;SOR=1.127;VQSLOD=6.92;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:34,20:54:99:568,0,959
1	206646427	rs1930437	C	A	319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.472;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.832;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-0.554;SB=-4.076e+01;SOR=0.105;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,12:29:99:348,0,612
1	206647742	rs1539242	A	G	5389.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-2.931e+03;SOR=1.073;VQSLOD=3.54;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5418,388,0
1	206647787	rs1539243	T	C	5377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-3.269e+03;SOR=0.776;VQSLOD=5.36;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,173:173:99:5406,403,0
1	206648037	rs2297546	C	G	1664.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-9.150e+02;SOR=0.693;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1693,123,0
1	206648147	rs1953090	T	G	561.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.363;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.097;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.281;SB=-3.380e+02;SOR=0.518;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,23:49:99:590,0,820
1	206651107	rs2297545	G	A	620.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-2.471e+02;SOR=1.721;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:649,48,0
1	206651350	rs2297543	C	T	733.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-2.690e+02;SOR=1.609;VQSLOD=6.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:57:762,57,0
1	206665052	rs12059562	C	T	1017.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.574;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.223;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-0.132;SB=-3.580e+02;SOR=1.179;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,39:85:99:1046,0,1257
1	206665837	rs11118256	G	A	1439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.545;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.734;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=1.278;SB=-7.930e+02;SOR=0.729;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,51:89:99:1468,0,1052
1	206665896	rs2336940	C	G	950.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.877;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.695;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=1.325;SB=-5.760e+02;SOR=0.626;VQSLOD=6.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:63,38:102:99:979,0,1845
1	206666803	rs17024891	G	A	673.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.369;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-0.838;SB=-2.600e+02;SOR=1.127;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,26:56:99:702,0,785
1	206667441	rs2184030	G	A	553.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.533;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-1.695;SB=-1.870e+02;SOR=1.139;VQSLOD=7.36;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,22:52:99:582,0,801
1	206670827	rs12754274	G	T	1077.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.528;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.953;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.265;SB=-3.980e+02;SOR=1.022;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,40:78:99:1106,0,1103
1	206680983	rs2095124	A	C	470.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-2.431e+02;SOR=1.244;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:499,36,0
1	206758077	rs4418597	T	A	2310.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-7.250e+02;SOR=2.082;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2339,178,0
1	206769047	rs11584983	T	C	659.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.432;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=7.156;HaplotypeScore=2.8150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-1.027;SB=-8.800e+01;SOR=1.897;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,22:51:99:688,0,737
1	206770283	rs11284613	AC	A	266.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DB;DP=17;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.956;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.69;RPA=7,6;RU=C;ReadPosRankSum=0.586;SB=-1.765e+00;SOR=2.387;STR;VQSLOD=0.190;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,10:17:99:304,0,207
1	206772194	rs59769291	ACT	A	307.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.623;POSITIVE_TRAIN_SITE;QD=20.52;RPA=2,1;RU=CT;ReadPosRankSum=0.847;SB=0.00;SOR=0.818;STR;VQSLOD=3.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:345,0,318
1	206772753	rs4845116	A	G	1168.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-4.060e+02;SOR=2.133;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1197,87,0
1	206773659	rs6662929	A	G	1333.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-6.640e+02;SOR=1.055;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1362,102,0
1	206776097	rs6658181	G	A	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.187;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=0.689;SB=-1.120e+02;SOR=0.293;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:322,0,151
1	206776200	rs6668054	C	T	1696.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.75;SB=-3.850e+02;SOR=2.560;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1725,126,0
1	206776203	rs6675741	T	C	1692.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.10;SB=-3.930e+02;SOR=2.608;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1721,129,0
1	206776460	rs35252702	G	A	824.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.164;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-0.918;SB=-5.180e+02;SOR=0.671;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,33:81:99:853,0,1415
1	206778642	rs4077413	A	C	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=1.214;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:279,0,416
1	206785402	rs78044000	T	G	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.018;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=0.508;SB=0.00;SOR=2.147;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:85:325,0,85
1	206810946	rs17013271	C	T	1525.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-1.155e+02;SOR=4.615;VQSLOD=3.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1554,117,0
1	206858726	rs146073998	G	T	868.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.18;SB=-3.510e+02;SOR=1.528;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:897,69,0
1	206904644	.	C	CGT	890.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.204;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=0.251;POSITIVE_TRAIN_SITE;QD=30.04;RPA=10,11;RU=GT;ReadPosRankSum=-1.446;SB=-9.197e+01;SOR=2.670;STR;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,23:32:31:928,31,0
1	206905043	rs4073250	C	T	3343.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-1.548e+03;SOR=1.336;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3372,244,0
1	206943351	rs3024494	T	C	1124.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-2.870e+02;SOR=2.833;VQSLOD=5.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1153,90,0
1	206972453	.	C	T	1566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.216;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.750;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.64;ReadPosRankSum=0.522;SB=-5.950e+02;SOR=0.796;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,58:107:99:1595,0,1302
1	207009910	rs2243170	T	C	998.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=0.00;SOR=6.593;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1027,78,0
1	207014472	rs2243188	A	C	850.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.344;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.668;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-0.441;SB=-2.720e+02;SOR=1.324;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,34:77:99:879,0,1232
1	207015957	rs2243191	T	C	1215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.706;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-0.029;SB=-7.500e+02;SOR=0.725;VQSLOD=9.81;culprit=SOR	GT:AD:DP:GQ:PL	0/1:42,47:89:99:1244,0,1081
1	207016125	rs1798	C	G	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.754;SB=0.00;SOR=0.593;VQSLOD=10.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:18:99:282,0,272
1	207038686	rs1400986	C	T	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.311;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.817;SB=-3.000e+01;SOR=0.910;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:444,0,498
1	207040577	rs2981573	G	A	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.585;SB=0.00;SOR=0.616;VQSLOD=10.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:360,0,415
1	207040659	rs2232360	G	A	1180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.373;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-0.882;SB=-2.540e+02;SOR=0.752;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,43:84:99:1209,0,1279
1	207091138	.	AT	A	41.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.98;RPA=16,15;RU=T;ReadPosRankSum=-1.245;SB=-2.901e+01;SOR=0.905;STR;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:15:79:79,0,188
1	207195779	rs2842726	A	G	3530.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-1.925e+03;SOR=0.892;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3559,259,0
1	207236064	rs370240765	G	A	1396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.335;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.757;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.25;ReadPosRankSum=-2.198;SB=-5.440e+02;SOR=0.600;VQSLOD=5.68;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:59,55:114:99:1425,0,1641
1	207243851	rs923109	A	G	915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-2.171e+02;SOR=2.387;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:944,69,0
1	207245045	rs11120137	T	C	1699.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=-4.470e+02;SOR=2.833;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1728,135,0
1	207245080	.	A	AT	625.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.762;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;MQRankSum=0.571;POSITIVE_TRAIN_SITE;QD=21.56;RPA=10,11;RU=T;ReadPosRankSum=-1.147;SB=-3.377e+01;SOR=2.448;STR;VQSLOD=2.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,26:34:10:662,10,0
1	207288897	rs12031629	T	C	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.800;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-0.795;SB=-6.900e+01;SOR=0.693;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:239,0,280
1	207297484	rs2842707	G	C	1990.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-1.029e+03;SOR=0.767;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2019,153,0
1	207297680	rs1126618	T	C	2586.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-1.474e+03;SOR=1.055;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2615,196,0
1	207300259	rs2491393	A	G	1834.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.223;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.551;SB=-5.710e+02;SOR=0.632;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,66:128:99:1863,0,1746
1	207300381	rs2491394	T	A	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=2.105;SB=0.00;SOR=0.693;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:335,0,363
1	207304900	rs4844573	T	C	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.098;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.093;SB=-6.700e+01;SOR=0.741;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:371,0,490
1	207500293	rs4844591	C	T	861.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.55;SB=-7.897e+01;SOR=4.091;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:890,66,0
1	207504669	rs2184476	G	A	701.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.88;SB=-7.797e+01;SOR=3.716;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:730,57,0
1	207510548	rs10746462	A	G	783.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=0.00;SOR=6.091;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:812,60,0
1	207510596	rs10746463	G	A	1264.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-2.760e+02;SOR=2.891;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1293,96,0
1	207512758	.	A	G	863.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.262;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.80;ReadPosRankSum=0.073;SB=-5.680e+02;SOR=0.712;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,36:80:99:892,0,1167
1	207532861	rs66763961	C	CTT,CTTT	1792.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.836;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.39;RPA=20,22,23;RU=T;ReadPosRankSum=0.344;SB=-3.040e+02;SOR=1.329;STR;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,29,30:70:99:1830,586,479,445,0,409
1	207653395	rs17617	C	A	1504.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-6.680e+02;SOR=1.203;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1533,114,0
1	207679229	rs4844599	T	G	1973.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-6.960e+02;SOR=1.942;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2002,144,0
1	207679307	rs4844600	A	G	3681.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-1.373e+03;SOR=1.761;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3710,268,0
1	207748793	rs650877	A	G	2256.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-7.450e+02;SOR=1.946;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2285,166,0
1	207753275	rs614709	T	C	452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=0.00;SOR=5.283;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:481,36,0
1	207753621	BGMUT_451	A	G	1954.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-6.920e+02;SOR=1.569;VQSLOD=6.85;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1983,150,0
1	207757936	rs646817	A	G	1878.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-7.897e+01;SOR=5.747;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1907,156,0
1	207758232	rs1752688	A	G	5118.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=2.605;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.29;ReadPosRankSum=-0.211;SB=-1.895e+03;SOR=1.667;VQSLOD=0.026;culprit=DP	GT:AD:DP:GQ:PL	1/1:2,167:169:99:5147,334,0
1	207782916	rs4844609	A	T	2595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-1.354e+03;SOR=0.948;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2624,196,0
1	207782931	BGMUT_455	A	G	2217.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-1.095e+03;SOR=0.941;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2246,169,0
1	207784968	rs3818361	A	G	821.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.39;SB=-5.710e+02;SOR=0.826;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:60:850,60,0
1	207790088	BGMUT_457	C	G	5554.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-2.877e+03;SOR=0.965;VQSLOD=4.52;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,180:180:99:5583,412,0
1	207795320	rs2296160	A	G	1673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-8.060e+02;SOR=1.412;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1702,120,0
1	207818719	rs11118237	G	A	758.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.10;SB=-4.580e+02;SOR=0.922;VQSLOD=5.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:57:787,57,0
1	207826095	.	C	CT	632.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.921;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.60;RPA=10,11;RU=T;ReadPosRankSum=-0.938;SB=-1.960e+02;SOR=0.527;STR;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,26:33:47:670,47,0
1	207850560	rs67422482	A	G	332.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=0.00;SOR=4.804;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:361,30,0
1	207850589	rs34451130	A	C	650.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.68;SB=0.00;SOR=5.784;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:679,51,0
1	207850652	.	CAAAAAA	C	1717.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.09;MQ0=0;MQRankSum=1.192;POSITIVE_TRAIN_SITE;QD=26.84;RPA=30,24;RU=A;ReadPosRankSum=-1.431;SB=-1.690e+02;SOR=1.708;STR;VQSLOD=3.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,29:36:5:1553,0,5
1	207851611	rs2296158	A	G	2608.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.05;SB=-1.609e+03;SOR=0.782;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2637,193,0
1	207851760	rs2296159	G	A	717.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-1.403e+02;SOR=2.737;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:746,57,0
1	207857158	rs12411037	T	C	2125.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-5.690e+02;SOR=2.531;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2154,157,0
1	207881256	rs1570565	G	A	116.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.100;SB=0.00;SOR=0.693;VQSLOD=10.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:145,0,175
1	207881485	rs11302038	TA	T	1484.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.893;DB;DP=108;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.132;SB=-6.580e+02;SOR=0.868;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,40:108:99:1522,0,2984
1	207881489	rs35438924	T	G	985.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.649;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.610;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=0.173;SB=-5.890e+02;SOR=0.902;VQSLOD=7.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,40:106:99:1014,0,1814
1	207881491	rs34277355	C	A	960.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.801;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.610;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=0.192;SB=-5.660e+02;SOR=0.902;VQSLOD=7.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,40:106:99:989,0,1884
1	207881557	rs6683902	A	G	900.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.612;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=0.631;SB=-5.140e+02;SOR=0.489;VQSLOD=7.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:57,37:94:99:929,0,1543
1	207883907	rs3927459	T	G	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.905;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.757;SB=-2.190e+02;SOR=0.659;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,22:63:99:660,0,1108
1	207886150	rs1359147	C	T	1424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.483;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.140;SB=-5.890e+02;SOR=0.673;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:70,52:122:99:1453,0,1855
1	207934553	rs41258244	A	T	329.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.703;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=1.186;SB=0.00;SOR=2.147;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:70:358,0,70
1	207941191	rs2724374	G	T	368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-1.155e+02;SOR=1.981;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:397,30,0
1	207956559	rs1962149	G	A	983.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-7.997e+01;SOR=4.479;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:78:1012,78,0
1	207959134	rs76425939	T	A	686.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=13.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;QD=34.34;ReadPosRankSum=1.736;SB=-1.765e+00;SOR=5.992;VQSLOD=1.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,19:20:20:715,20,0
1	207959135	rs55828915	T	A	691.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=13.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;QD=34.59;ReadPosRankSum=1.736;SB=-1.765e+00;SOR=5.992;VQSLOD=1.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,19:20:20:720,20,0
1	207959136	rs56114948	T	A	650.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.166;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=12.788;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;QD=32.54;ReadPosRankSum=1.737;SB=-1.765e+00;SOR=5.992;VQSLOD=2.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,19:20:17:679,17,0
1	207975681	.	G	GT	363.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.37;RPA=2,3;RU=T;ReadPosRankSum=0.864;SB=-1.870e+02;SOR=0.757;STR;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,13:32:99:401,0,693
1	207992546	rs12123251	G	A	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.175;SB=-4.176e+01;SOR=0.223;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:206,0,169
1	208041254	.	C	A	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.305;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.763;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-3.254;SB=-8.200e+01;SOR=1.950;VQSLOD=3.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:33,16:49:99:388,0,957
1	208062260	rs2745952	T	C	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.780;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.596;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.370;SB=-2.140e+02;SOR=0.397;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:460,0,331
1	208062973	rs2745953	A	T	558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=1.623;SB=-2.400e+02;SOR=0.732;VQSLOD=8.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:587,0,522
1	208063067	rs2179634	G	A	337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=1.124;SB=-1.980e+02;SOR=0.636;VQSLOD=8.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,16:38:99:366,0,576
1	208063100	.	G	GA	491.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;RPA=12,13;RU=A;ReadPosRankSum=-0.930;SB=-1.560e+02;SOR=1.264;STR;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,23:30:45:529,0,45
1	208071105	rs3738460	A	G	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=-0.536;SB=-3.876e+01;SOR=0.569;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:93:221,0,93
1	208204794	rs76190764	CTGTT	C	654.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;RPA=2,1;RU=TGTT;SB=0.00;SOR=4.804;STR;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:692,30,0
1	208211887	rs905100	T	C	549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-1.533e+02;SOR=2.049;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:578,42,0
1	208212397	rs2767566	A	G	1789.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-3.110e+02;SOR=3.215;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1818,132,0
1	208213125	rs1751580	A	G	1680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-9.840e+02;SOR=0.892;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1709,123,0
1	208219164	rs1536471	A	C	540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=7.144;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.490;SB=-2.500e+02;SOR=0.165;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,23:47:99:569,0,726
1	208224173	.	TA	T	34.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.17;RPA=13,12;RU=A;ReadPosRankSum=-1.529;SB=0.00;SOR=0.223;STR;VQSLOD=7.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:17:72:72,0,257
1	208224957	rs681429	C	T	1122.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-1.165e+02;SOR=3.981;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1151,90,0
1	208252489	rs2274445	T	C	1006.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.608;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.003;HaplotypeScore=3.5793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-0.651;SB=-4.130e+02;SOR=0.958;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,31:60:99:1035,0,733
1	208255877	rs6540453	T	C	2066.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-5.690e+02;SOR=2.602;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2095,166,0
1	208258102	rs10159299	T	C	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.124;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=0.489;SB=0.00;SOR=0.914;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:350,0,266
1	208276399	rs367897509	C	CCTCT	3109.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.90;RPA=4,6;RU=CT;SB=-1.188e+03;SOR=1.251;STR;VQSLOD=4.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:49:99:3147,140,0
1	208390469	rs3748735	C	T	1289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.349;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.691;HaplotypeScore=2.5388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=1.755;SB=-7.410e+02;SOR=0.839;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,52:119:99:1318,0,1825
1	208391098	rs11119014	T	C	2379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DB;DP=194;Dels=0.00;ExcessHet=3.0103;FS=6.097;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-0.610;SB=-1.421e+03;SOR=0.388;VQSLOD=6.31;culprit=DP	GT:AD:DP:GQ:PL	0/1:101,92:194:99:2408,0,2930
1	208871055	rs1166871	G	T	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.497;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.17;ReadPosRankSum=0.000;SB=-1.709e+01;SOR=1.893;VQSLOD=6.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:127,0,285
1	209405753	rs2800919	G	A	441.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.99;SB=-3.300e+02;SOR=0.804;VQSLOD=5.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:33:470,33,0
1	209603996	rs2294938	A	G	1928.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.21;SB=-3.650e+02;SOR=2.876;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1957,147,0
1	209605636	rs3842530	TAGCAGCAGCAGC	T	3267.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;RPA=13,9;RU=AGC;SB=-5.793e+02;SOR=2.833;STR;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:42:69:3305,69,0
1	209778737	rs2235455	G	A	413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.018;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.468;SB=-6.500e+01;SOR=0.563;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,16:41:99:442,0,803
1	209778771	rs35508847	G	C	702.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.203;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=-0.015;SB=-1.820e+02;SOR=0.483;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,25:60:99:731,0,1079
1	209779126	rs11119313	C	A	553.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.238;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=-0.996;SB=0.00;SOR=1.143;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:582,0,406
1	209779137	rs2235449	C	T	510.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.641;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.64;ReadPosRankSum=-0.739;SB=0.00;SOR=1.220;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,16:26:99:539,0,320
1	209779652	rs35498535	T	G	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.715;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.273;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-0.828;SB=-3.140e+02;SOR=0.418;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,26:45:99:694,0,516
1	209779805	rs880783	G	A	370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.571;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.698;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.398;SB=-5.800e+01;SOR=1.483;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:399,0,502
1	209781125	rs760833	T	C	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-0.765;SB=-7.000e+01;SOR=0.770;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:446,0,453
1	209782343	rs11119314	A	G	874.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.349;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-0.671;SB=-4.850e+02;SOR=0.359;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,36:74:99:903,0,1130
1	209783319	rs199573100	C	T	1248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.588;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-1.042;SB=-5.290e+02;SOR=0.661;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,47:98:99:1277,0,1387
1	209784663	rs10746421	A	C	545.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.11;SB=-8.097e+01;SOR=3.258;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:574,42,0
1	209784927	rs2076230	G	T	1892.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-1.169e+03;SOR=0.756;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1921,141,0
1	209785011	rs2076226	G	C	1450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-6.980e+02;SOR=0.902;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1479,111,0
1	209785206	rs11119315	G	A	1028.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=2.948;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-1.100;SB=-5.510e+02;SOR=0.842;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,38:78:99:1057,0,1091
1	209785922	rs115272288	G	A	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-0.897;SB=-1.670e+02;SOR=0.770;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:441,0,562
1	209785957	rs2272879	T	G	1409.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-3.140e+02;SOR=2.613;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1438,108,0
1	209786078	rs2272880	G	A	2964.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-1.549e+03;SOR=1.156;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2993,223,0
1	209788703	rs1049607	T	C	2331.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-9.130e+02;SOR=1.833;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2360,181,0
1	209792015	.	A	AC	4641.73	PASS	AC=2;AF=1.00;AN=2;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.74;RPA=1,2;RU=C;SB=-1.739e+03;SOR=1.352;STR;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:109:99:4679,310,0
1	209795909	rs3179860	T	C	539.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.456;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=0.795;SB=-7.000e+01;SOR=1.426;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,17:31:99:568,0,368
1	209796329	rs12748250	T	A	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.945;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-1.326;SB=-2.402e+01;SOR=1.236;VQSLOD=7.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,15:42:99:436,0,851
1	209798824	rs4844860	A	G	748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.74;SB=-4.910e+02;SOR=0.997;VQSLOD=4.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:57:777,57,0
1	209799253	rs2179402	A	G	2683.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-1.675e+03;SOR=0.765;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2712,196,0
1	209800976	rs2072938	C	T	1069.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=2.229;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=0.125;SB=-3.940e+02;SOR=0.380;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,39:78:99:1098,0,1126
1	209803908	rs34311919	G	C	701.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=-0.021;SB=-3.290e+02;SOR=0.557;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,28:35:99:730,0,165
1	209804095	rs4844863	G	A	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.315;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-0.999;SB=-2.040e+02;SOR=0.346;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,17:26:99:436,0,265
1	209807972	rs1130667	G	A	522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=0.021;SB=-1.790e+02;SOR=0.346;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,20:31:99:551,0,325
1	209811886	rs2076356	T	G	4259.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-2.250e+03;SOR=1.092;VQSLOD=4.32;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4288,313,0
1	209812063	rs2076357	T	C	937.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.162;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.069;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.880;SB=-3.100e+02;SOR=0.451;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,34:72:99:966,0,1121
1	209849002	rs3817870	T	C	731.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.757;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=9.650;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.371;SB=-3.730e+02;SOR=0.113;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:760,0,685
1	209849399	rs3830766	AG	A	143.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.878;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=0.517;SB=-1.764e+00;SOR=1.022;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:181,0,371
1	209849406	.	T	G	489.77	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.98;SB=-3.777e+01;SOR=3.912;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:518,39,0
1	209950681	rs649275	T	C	2494.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.0046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-8.970e+02;SOR=1.952;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2523,184,0
1	209950760	rs669694	C	G	3204.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-1.701e+03;SOR=1.029;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3232,235,0
1	209952865	rs623360	C	G	457.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.91;SB=-4.276e+01;SOR=3.767;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:486,36,0
1	209974528	.	C	CA	283.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;DP=48;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.60;RPA=21,22;RU=A;ReadPosRankSum=0.816;SB=-8.100e+01;SOR=0.377;STR;VQSLOD=6.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,20:48:99:321,0,244
1	210001586	rs616227	A	G	1104.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-3.330e+02;SOR=2.115;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1133,84,0
1	210003388	rs599663	A	C	1293.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-5.290e+02;SOR=1.721;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:96:1322,96,0
1	210003402	rs599649	T	C	1494.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-6.770e+02;SOR=1.519;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1523,111,0
1	210004199	rs585627	C	G	1951.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-8.240e+02;SOR=1.460;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1980,141,0
1	210006603	rs656566	C	T	2136.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-9.290e+02;SOR=1.445;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2165,157,0
1	210006873	rs657844	T	G	656.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=0.00;SOR=5.784;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:685,51,0
1	210006884	rs657861	C	G	483.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=0.00;SOR=5.283;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:512,39,0
1	210008367	rs685248	C	G	1847.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-2.471e+02;SOR=3.215;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1876,138,0
1	210008673	rs686582	T	G	629.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-7.397e+01;SOR=3.500;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:658,48,0
1	210012102	rs1962735	A	G	1726.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-1.029e+03;SOR=0.841;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1755,126,0
1	210012467	rs143030946	A	C	1316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.596;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=3.473;HaplotypeScore=2.5658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.19;ReadPosRankSum=2.090;SB=-8.700e+02;SOR=0.657;VQSLOD=5.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:53,55:109:99:1345,0,1434
1	210014603	rs674804	C	G	374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=0.00;SOR=4.804;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:403,30,0
1	210015568	rs10570454	GCT	G	1716.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.04;RPA=2,1;RU=CT;SB=-3.181e+02;SOR=2.899;STR;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:35:99:1754,102,0
1	210332577	rs12408541	C	A	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-0.380;SB=0.00;SOR=1.244;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:332,0,197
1	210406940	rs624270	T	C	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.405;SB=-6.500e+01;SOR=0.527;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:178,0,103
1	210407031	rs624706	G	T	168.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.809;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=-0.922;SB=-3.000e+01;SOR=0.473;VQSLOD=8.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,8:22:99:197,0,392
1	210407338	rs200920236	T	A	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.680;HaplotypeScore=4.4300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.62;ReadPosRankSum=1.165;SB=-8.400e+01;SOR=1.179;VQSLOD=5.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,8:24:99:163,0,433
1	210407339	rs34824193	T	A	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.103;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.19;ReadPosRankSum=1.722;SB=-1.170e+02;SOR=0.936;VQSLOD=7.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,10:25:99:208,0,392
1	210414871	.	G	GT	294.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;DP=35;ExcessHet=3.0103;FS=2.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.42;RPA=7,8;RU=T;ReadPosRankSum=-0.893;SB=-5.503e+01;SOR=0.157;STR;VQSLOD=7.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,14:35:99:332,0,494
1	210522080	rs377275789	C	CGTGT,CGTGTGT	1207.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;RPA=13,15,16;RU=GT;SB=-2.820e+02;SOR=2.531;STR;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,11,9:21:99:1245,361,305,366,0,340
1	210536078	rs2294848	C	G	2816.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-8.910e+02;SOR=2.120;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2845,205,0
1	210536278	rs11119469	C	A	936.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.968;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=-0.705;SB=-3.690e+02;SOR=0.394;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,35:57:99:965,0,645
1	210536387	rs11119470	T	C	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=-0.511;SB=0.00;SOR=1.085;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:93:220,0,93
1	210577831	rs34772809	C	T	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=0.360;SB=-1.630e+02;SOR=0.473;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,11:29:99:300,0,500
1	210577873	rs2066721	G	C	984.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-6.480e+02;SOR=0.693;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:1013,72,0
1	210577901	rs34228541	T	C	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.604;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.555;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.834;SB=-1.490e+02;SOR=1.346;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:389,0,584
1	210591742	rs3215542	TG	T	430.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;RPA=6,5;RU=G;SB=-3.876e+01;SOR=3.767;STR;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:14:39:468,39,0
1	210686570	rs4545340	A	G	687.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=-2.890e+02;SOR=1.519;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:51:716,51,0
1	210761462	rs4297293	G	C	2210.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.52;SB=-1.653e+02;SOR=4.875;VQSLOD=4.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2239,169,0
1	210847514	rs1934615	A	T	1170.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-6.110e+02;SOR=1.121;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1199,87,0
1	210856585	rs3135473	G	T	1949.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-9.040e+02;SOR=1.234;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1978,150,0
1	210857116	rs115026899	C	A	1684.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.934;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=12.681;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.989;SB=-1.042e+03;SOR=0.221;VQSLOD=3.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:70,66:136:99:1713,0,1971
1	210857457	rs1135317	A	G	744.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.64;SB=-2.730e+02;SOR=1.697;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:773,57,0
1	211033317	rs4951484	G	T	295.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.89;SB=-1.573e+02;SOR=1.270;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:324,24,0
1	211033368	rs4951671	G	C	314.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.23;SB=-2.061e+02;SOR=1.022;VQSLOD=5.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:343,24,0
1	211034143	rs4951674	T	G	35.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=6.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.58;ReadPosRankSum=1.213;SB=-2.302e+01;SOR=0.847;VQSLOD=5.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:64:64,0,179
1	211093590	rs1501569	C	T	165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=-2.334;SB=-4.176e+01;SOR=0.116;VQSLOD=6.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:194,0,287
1	211192707	rs11119658	G	A	406.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.869;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=1.336;SB=-2.801e+01;SOR=2.012;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:435,0,382
1	211263836	rs17188860	T	A	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=0.000;SB=-4.076e+01;SOR=0.425;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,16:26:99:529,0,337
1	211264140	rs79802694	A	G	548.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.913;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=-0.468;SB=-4.276e+01;SOR=0.223;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:577,0,527
1	211280724	.	TA	T	426.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;DP=88;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.93;RPA=14,13;RU=A;ReadPosRankSum=-1.239;SB=-9.311e+01;SOR=0.321;STR;VQSLOD=4.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,29:88:99:464,0,190
1	211280737	.	A	AC	1778.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.385;DP=82;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.69;ReadPosRankSum=0.072;SB=-2.950e+02;SOR=0.950;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,49:82:99:1816,0,669
1	211380578	rs61737773	A	G	129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.064;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=0.000;SB=-2.302e+01;SOR=1.508;VQSLOD=6.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:158,0,315
1	211380770	rs7525401	T	C	1154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.228;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.964;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-0.182;SB=-3.630e+02;SOR=1.054;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1183,0,1136
1	211447625	rs11580084	G	A	2748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-1.618e+03;SOR=0.901;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2777,202,0
1	211449451	rs10732682	A	G	400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=0.00;SOR=4.977;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:429,33,0
1	211452529	rs10708960	TA	T	138.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.385;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;RPA=15,14;RU=A;ReadPosRankSum=-1.645;SB=-5.197e+01;SOR=1.022;STR;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,9:10:2:174,2,0
1	211452678	rs3767377	G	A	656.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;SB=-3.600e+02;SOR=0.793;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:685,51,0
1	211452728	rs3767378	G	A	550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-2.401e+02;SOR=1.493;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:579,42,0
1	211527609	rs7530570	C	A	408.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SB=-7.797e+01;SOR=2.494;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:437,33,0
1	211529569	rs7550702	T	C	492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=0.00;SOR=5.283;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:521,39,0
1	211530044	rs4951523	T	G	465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=0.00;SOR=5.136;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:494,36,0
1	211545442	rs10717294	CT	C	123.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.84;RPA=16,15;RU=T;ReadPosRankSum=-0.730;SB=-3.497e+01;SOR=0.914;STR;VQSLOD=9.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,12:15:6:160,0,6
1	211590892	rs1877476	A	G	1535.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-9.190e+02;SOR=0.900;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1564,111,0
1	211591135	rs1707247	T	C	847.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-4.400e+02;SOR=1.101;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:876,63,0
1	211840278	rs1542140	T	C	1114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.495;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=10.657;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.566;SB=-3.930e+02;SOR=0.122;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1143,0,1209
1	211846876	rs701929	A	G	1289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=1.705;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.866;SB=-5.910e+02;SOR=0.497;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,50:105:99:1318,0,1586
1	212030216	rs28778433	C	G	301.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-1.603e+02;SOR=1.085;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:330,24,0
1	212236157	rs4951436	G	T	1198.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-2.291e+02;SOR=3.026;VQSLOD=5.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1227,90,0
1	212240063	rs3738449	G	A	924.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-1.523e+02;SOR=3.258;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:953,72,0
1	212251103	rs6658972	A	G	329.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-1.245e+02;SOR=1.802;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:358,27,0
1	212273639	rs3135474	C	T	1450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-8.490e+02;SOR=0.780;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1479,111,0
1	212274413	rs6540718	A	C	1100.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.40;SB=-2.850e+02;SOR=2.448;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1129,81,0
1	212274503	.	C	CT	77.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;RPA=14,15;RU=T;ReadPosRankSum=1.068;SB=0.00;SOR=1.609;STR;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,5:10:27:115,0,27
1	212475573	rs2298114	T	C	532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.426;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.187;HaplotypeScore=4.5860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-0.197;SB=-1.270e+02;SOR=1.358;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,20:41:99:561,0,543
1	212475634	rs12743785	C	T	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.685;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-0.418;SB=-3.400e+01;SOR=0.512;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:297,0,348
1	212515613	rs1774249	C	T	589.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.134;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=-0.159;SB=-3.000e+02;SOR=1.074;VQSLOD=7.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,25:66:99:618,0,997
1	212521639	rs701908	T	G	1374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-3.260e+02;SOR=2.613;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1403,102,0
1	212526288	rs792442	C	T	3103.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2773;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-1.586e+03;SOR=1.134;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3132,229,0
1	212530192	rs792439	T	C	1696.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-5.450e+02;SOR=2.049;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1725,126,0
1	212538771	.	CT	C	94.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=0.579;POSITIVE_TRAIN_SITE;QD=5.92;RPA=19,18;RU=T;ReadPosRankSum=-0.879;SB=-2.303e+01;SOR=0.976;STR;VQSLOD=3.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,9:21:99:132,0,113
1	212551139	rs67869371	G	GCA	347.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;RPA=2,3;RU=CA;ReadPosRankSum=-0.501;SB=-1.764e+00;SOR=1.214;STR;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:29:99:385,0,564
1	212560327	rs792449	A	G	2697.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-1.555e+03;SOR=0.959;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2726,196,0
1	212588206	rs518793	C	G	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=0.786;SB=-1.120e+02;SOR=0.775;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:552,0,763
1	212615875	rs521469	T	C	746.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.263;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.793;SB=-2.630e+02;SOR=1.022;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,25:58:99:775,0,1005
1	212616080	rs374120746	C	CATTTT	307.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.524;QD=18.46;RPA=4,5;RU=ATTTT;ReadPosRankSum=0.712;SB=0.00;SOR=1.085;STR;VQSLOD=2.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:17:99:345,0,223
1	212617829	rs2275712	C	G	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.0890;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=-0.748;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-0.277;SB=-1.900e+02;SOR=0.836;VQSLOD=2.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,21:55:99:552,0,887
1	212617860	.	CGTGTGT	C	499.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=0.579;POSITIVE_TRAIN_SITE;QD=15.62;RPA=25,22;RU=GT;ReadPosRankSum=-0.411;SB=-1.491e+01;SOR=0.275;STR;VQSLOD=3.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:32:99:537,0,231
1	212618993	.	A	C	43.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=7.0587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.547;SB=-9.732e-01;SOR=3.601;VQSLOD=3.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:72:72,0,167
1	212619009	rs2282435	C	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-1.176;SB=-1.380e+02;SOR=0.385;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:235,0,131
1	212619339	rs4804	T	C	1665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.433;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=7.299;HaplotypeScore=3.7731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.132;SB=-7.050e+02;SOR=1.414;VQSLOD=6.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:57,67:124:99:1694,0,1376
1	212799870	rs3122713	A	G	4307.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-2.588e+03;SOR=0.783;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4336,313,0
1	212799949	rs3795842	C	T	3158.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-1.389e+03;SOR=1.329;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3187,235,0
1	212870142	rs2233927	G	A	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.145;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-1.332;SB=-3.400e+01;SOR=0.238;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:231,0,288
1	212900434	rs33977347	C	CG	446.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-1.505e+02;SOR=1.609;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:484,30,0
1	212900487	rs2244935	A	G	418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-1.653e+02;SOR=1.765;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:447,33,0
1	212911836	rs15702	T	C	2416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-1.257e+03;SOR=0.976;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2445,181,0
1	212955231	rs11120025	A	C	445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=0.00;SOR=5.136;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:474,36,0
1	212955454	rs11120026	G	A	835.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.472;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=10.186;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-1.165;SB=-5.100e+02;SOR=0.376;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,32:53:99:864,0,606
1	212969842	.	C	CT	968.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;DP=62;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.70;RPA=13,14;RU=T;ReadPosRankSum=0.162;SB=-2.910e+02;SOR=0.982;STR;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,44:62:99:1006,0,167
1	212970375	rs1284800	A	G	700.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.57;SB=-8.297e+01;SOR=3.716;VQSLOD=3.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:729,54,0
1	212997872	rs112950522	GAGAGAAGAGAAGAGA	G	1035.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.89;RPA=6,3;RU=AGAGA;SB=-1.758e+02;SOR=2.833;STR;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:15:24:1073,24,0
1	213009469	rs10864004	A	G	649.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.602;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.424;HaplotypeScore=3.6268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=1.484;SB=-1.410e+02;SOR=0.465;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,23:53:99:678,0,875
1	213031158	rs1047881	C	T	1534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.653;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.603;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.669;SB=-9.210e+02;SOR=0.496;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,63:106:99:1563,0,1118
1	213031350	rs2220949	C	T	406.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.672;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.751;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=1.487;SB=-1.310e+02;SOR=1.320;VQSLOD=7.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,17:45:99:435,0,803
1	213031448	rs2201601	G	C	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=7.219;HaplotypeScore=4.4558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=0.817;SB=-1.790e+02;SOR=0.076;VQSLOD=6.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,13:36:99:323,0,529
1	213031473	rs2201602	A	C	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.677;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.1993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=1.215;SB=-1.870e+02;SOR=0.569;VQSLOD=8.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,13:30:99:290,0,386
1	213031948	rs11120047	G	C	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.515;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=-0.527;SB=-1.610e+02;SOR=0.368;VQSLOD=7.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,12:31:99:324,0,639
1	213032568	rs12023052	T	A	666.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.908;HaplotypeScore=3.8268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.13;ReadPosRankSum=0.141;SB=-3.650e+02;SOR=0.823;VQSLOD=7.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:53,29:82:99:695,0,1466
1	213036924	.	C	CAAAA	386.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;RPA=14,18;RU=A;ReadPosRankSum=-0.810;SB=0.00;SOR=0.610;STR;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:424,0,488
1	213046236	rs1890932	G	A	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-1.953;SB=0.00;SOR=0.693;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:196,0,208
1	213056819	rs2644547	A	G	2493.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-1.509e+03;SOR=0.772;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2522,181,0
1	213056892	rs12125982	A	G	747.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.497;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=0.888;SB=-2.290e+02;SOR=1.547;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,26:48:99:776,0,599
1	213058852	rs7536716	T	A	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=-1.257;SB=0.00;SOR=0.693;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:236,0,230
1	213058871	rs7522693	C	G	110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=-2.042;SB=0.00;SOR=0.551;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:139,0,135
1	213061308	rs17677416	T	C	1192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.905;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-1.721;SB=-8.820e+02;SOR=0.716;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,53:97:99:1221,0,1128
1	213061362	rs2291772	T	A	1121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=4.120;HaplotypeScore=2.6665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.862;SB=-6.150e+02;SOR=0.372;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,44:89:99:1150,0,1143
1	213061460	rs2291771	T	C	432.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.618;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-0.226;SB=-6.800e+01;SOR=1.034;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:461,0,405
1	213062017	rs66486342	T	TTTG	1572.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.47;RPA=5,6;RU=TTG;SB=0.00;SOR=6.869;STR;VQSLOD=3.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:45:90:1610,90,0
1	213062067	rs10864022	T	C	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.122;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.974;SB=0.00;SOR=1.292;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:408,0,217
1	213068192	rs2792558	T	C	789.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.34;SB=0.00;SOR=6.184;VQSLOD=7.04;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,21:21:60:818,60,0
1	213068233	rs12408694	C	T	1218.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-1.543e+02;SOR=3.855;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:96:1247,96,0
1	213068404	rs17019870	T	C	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.489;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.189;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=1.163;SB=-1.550e+02;SOR=0.909;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,18:51:99:563,0,929
1	213068436	rs17019873	A	G	433.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.702;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.805;SB=-2.010e+02;SOR=0.405;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,16:43:99:462,0,865
1	213068542	rs371237187	C	CTGAT	1117.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.66;RPA=1,2;RU=TGAT;ReadPosRankSum=1.855;SB=-3.800e+02;SOR=0.836;STR;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:39:99:1155,0,1075
1	213068595	rs3207090	C	T	749.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.476;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.876;SB=-2.260e+02;SOR=1.179;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,25:54:99:778,0,756
1	213139748	rs3738805	T	G	936.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.019;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.878;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=1.564;SB=-3.660e+02;SOR=0.864;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,35:84:99:965,0,1262
1	213140398	rs10779598	A	C	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-1.188;SB=-1.080e+02;SOR=0.307;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:263,0,277
1	213146944	rs7511930	A	G	418.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.079;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=-0.046;SB=-1.070e+02;SOR=0.223;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:447,0,422
1	213173457	rs3738806	C	T	807.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-2.331e+02;SOR=2.124;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:25:60:836,60,0
1	213178340	rs11120076	G	A	2833.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-1.394e+03;SOR=1.305;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2862,214,0
1	213224719	rs4951476	T	C	1038.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=-1.373e+02;SOR=3.407;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:31:78:1067,78,0
1	213234933	.	G	GT	1365.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DP=87;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.50;MQ0=0;MQRankSum=0.873;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.46;RPA=13,14;RU=T;ReadPosRankSum=-0.851;SB=-4.494e+02;SOR=0.375;STR;VQSLOD=0.260;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,63:87:49:1403,0,49
1	213405414	rs11271079	GGCAACTGAGGAT	G	5176.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;RPA=2,1;RU=GCAACTGAGGAT;SB=-4.753e+02;SOR=3.912;STR;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:39:99:5214,114,0
1	214478459	rs6540819	G	A	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.653;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.736;HaplotypeScore=1.9290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.457;SB=-9.400e+01;SOR=1.362;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,17:31:99:482,0,381
1	214492286	rs1134647	G	A	781.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.636;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.292;SB=-5.170e+02;SOR=0.673;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,32:52:99:810,0,486
1	214500852	rs115367134	A	T	166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=0.573;SB=0.00;SOR=0.399;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:195,0,302
1	214503489	rs2291830	T	G	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.239;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=5.067;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-0.046;SB=-3.130e+02;SOR=1.122;VQSLOD=7.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,26:66:99:680,0,1027
1	214504604	rs2270704	T	C	1508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.299;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.978;SB=-6.190e+02;SOR=0.856;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,57:114:99:1537,0,1610
1	214505716	rs6419474	T	C	1006.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-7.997e+01;SOR=4.407;VQSLOD=6.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1035,78,0
1	214542668	rs3002311	T	C	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=1.063;SB=0.00;SOR=0.859;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:211,0,161
1	214542819	rs1135352	T	C	706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=10.643;HaplotypeScore=3.4161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=0.244;SB=-4.230e+02;SOR=0.156;VQSLOD=6.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:60,30:90:99:735,0,1848
1	214551276	rs3013451	G	A	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=-0.545;SB=0.00;SOR=0.340;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:191,0,364
1	214560293	rs2270703	G	T	1246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.584;HaplotypeScore=1.7337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=-0.839;SB=-3.650e+02;SOR=0.407;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,44:67:99:1275,0,640
1	214564340	rs7550799	T	C	1134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.448;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.672;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=-1.431;SB=-7.570e+02;SOR=0.581;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:80,50:130:99:1163,0,1960
1	214564442	rs11120307	C	G	634.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.329;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=5.516;HaplotypeScore=1.4725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.624;SB=-2.170e+02;SOR=0.180;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:663,0,902
1	214566952	rs4655342	A	G	608.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.335;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-1.152;SB=-1.580e+02;SOR=0.795;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:637,0,601
1	214568471	rs11120308	C	A	97.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.98;ReadPosRankSum=-0.283;SB=0.00;SOR=0.188;VQSLOD=9.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:126,0,289
1	214576194	rs200742233	G	T	928.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.723;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.273;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=-0.258;SB=-2.000e+02;SOR=0.954;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,33:57:99:957,0,687
1	214637882	rs7528315	A	G	1535.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=0.00;SOR=7.378;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1564,117,0
1	214638319	rs10864101	T	C	843.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=0.00;SOR=6.439;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:872,72,0
1	214638347	rs10864102	A	G	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=0.00;SOR=4.977;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
1	214787130	rs2070064	G	A	480.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.027;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.536;SB=-2.250e+02;SOR=0.668;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,19:41:99:509,0,640
1	214814571	rs3795521	C	T	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.565;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=-1.651;SB=-1.240e+02;SOR=0.682;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:362,0,652
1	214820099	rs3748697	A	G	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.561;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=0.908;SB=-6.100e+01;SOR=2.303;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:334,0,301
1	214826196	rs335524	G	A	738.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.954;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.337;SB=-4.950e+02;SOR=0.536;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,30:63:99:767,0,964
1	214826364	rs335523	G	A	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.511;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.02;ReadPosRankSum=1.014;SB=-1.580e+02;SOR=0.216;VQSLOD=7.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,11:36:99:281,0,716
1	214826810	.	CT	C	1798.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.140;DP=110;ExcessHet=3.0103;FS=3.256;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=0.475;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.74;RPA=15,14;RU=T;ReadPosRankSum=-0.997;SB=-8.020e+02;SOR=0.323;STR;VQSLOD=0.209;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:8,88:110:74:1836,74,0
1	214826988	rs335522	A	C	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=0.00;SOR=4.977;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:412,30,0
1	214828812	rs435043	A	G	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.703;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.874;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.265;SB=-2.490e+02;SOR=0.336;VQSLOD=7.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,19:42:99:429,0,618
1	214830617	rs438034	A	G	883.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.852;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=0.025;SB=-5.760e+02;SOR=0.307;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,34:56:99:912,0,616
1	214837110	rs7289	C	G	815.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.629;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.028;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-1.024;SB=-3.930e+02;SOR=0.493;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,33:65:99:844,0,799
1	215260152	rs11586565	A	T	87.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.27;ReadPosRankSum=-0.707;SB=0.00;SOR=0.188;VQSLOD=9.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:116,0,352
1	215345263	rs3834061	GTCTCTC	G	990.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;RPA=11,8;RU=TC;SB=-8.676e+01;SOR=3.767;STR;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:1028,39,0
1	215753355	rs11803705	T	G	866.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.421;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.408;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=1.707;SB=-3.470e+02;SOR=0.349;VQSLOD=7.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:33,33:66:99:895,0,880
1	215781574	rs3767255	A	G	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.666;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.817;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-1.205;SB=-1.090e+02;SOR=0.363;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:451,0,544
1	215793834	rs14137	G	A	942.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=5.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.348;SB=-4.350e+02;SOR=1.046;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,35:77:99:971,0,1064
1	215814142	.	T	TA	298.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.96;RPA=12,13;RU=A;ReadPosRankSum=0.520;SB=-5.000e+01;SOR=0.859;STR;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:35:99:336,0,250
1	215814186	.	CA	C	305.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;RPA=18,17;RU=A;ReadPosRankSum=-0.624;SB=-7.202e+01;SOR=0.269;STR;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,19:26:34:267,0,34
1	215848062	rs2009923	C	T	1229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.646;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-0.760;SB=-3.430e+02;SOR=0.762;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,45:88:99:1258,0,1315
1	215848587	rs2797234	T	C	888.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=11.664;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.422;SB=-3.520e+02;SOR=0.980;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,33:77:99:917,0,1270
1	215848641	rs2797235	T	C	1044.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=4.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-0.838;SB=-5.500e+02;SOR=0.745;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,43:74:99:1073,0,936
1	215853357	rs10864183	G	A	1754.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-7.700e+02;SOR=1.532;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1783,132,0
1	215853748	rs5780842	GT	G	1427.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.229;DB;DP=73;ExcessHet=3.0103;FS=1.934;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=3.606;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.00;RPA=12,11;RU=T;ReadPosRankSum=1.505;SB=-4.621e+02;SOR=1.347;STR;VQSLOD=0.346;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,63:73:71:1465,71,0
1	215853835	rs12140451	A	G	947.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=0.00;SOR=6.439;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:976,72,0
1	215914646	rs6694510	T	A	391.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.134;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=0.495;SB=0.00;SOR=0.250;VQSLOD=8.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,15:44:99:420,0,1030
1	215932957	rs17025373	G	A	813.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.453;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.971;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-1.190;SB=-1.240e+02;SOR=1.254;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,29:57:99:842,0,812
1	215956304	rs7518466	A	G	1673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-3.680e+02;SOR=2.970;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1702,129,0
1	215960167	rs10864198	T	G	2447.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-1.028e+03;SOR=1.516;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2476,178,0
1	215987222	rs4129843	T	C	604.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.401;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=6.016;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.158;SB=-5.800e+01;SOR=1.955;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,20:43:99:633,0,606
1	216011361	rs56032526	T	C	977.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.181;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=2.996;HaplotypeScore=2.3346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.241;SB=-5.860e+02;SOR=0.936;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1006,0,885
1	216019426	rs146638027	GA	G	452.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQ0=0;MQRankSum=1.986;QD=8.08;RPA=10,9;RU=A;ReadPosRankSum=1.154;SB=-1.050e+02;SOR=0.608;STR;VQSLOD=0.714;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,25:61:99:490,0,694
1	216050980	rs56301415	C	T	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-1.135;SB=0.00;SOR=0.804;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:309,0,269
1	216051125	rs41277200	G	A	1637.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.028;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.482;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-0.279;SB=-5.450e+02;SOR=0.903;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,61:125:99:1666,0,1679
1	216051287	rs7518358	A	G	1367.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.997;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=1.844;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-0.853;SB=-3.430e+02;SOR=0.938;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,51:101:99:1396,0,1379
1	216051381	rs79952600	G	T	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.936;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.188;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.718;SB=-9.732e-01;SOR=2.584;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:415,0,345
1	216052549	rs6669557	A	G	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.458;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.393;SB=0.00;SOR=0.465;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:297,0,413
1	216172128	.	C	CT	65.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;DP=30;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.35;RPA=12,13;RU=T;ReadPosRankSum=0.212;SB=-4.200e+01;SOR=0.269;STR;VQSLOD=4.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,7:30:99:103,0,396
1	216172380	rs10864219	A	G	1008.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-3.650e+02;SOR=1.911;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1037,75,0
1	216219781	rs6657250	A	G	727.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.972;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.309;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.515;SB=-1.840e+02;SOR=1.276;VQSLOD=8.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,29:74:99:756,0,1150
1	216221721	rs10864227	C	T	939.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.961e+02;SOR=2.670;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:968,72,0
1	216246675	rs35944387	AG	A	550.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.18;RPA=3,2;RU=G;ReadPosRankSum=0.053;SB=-9.500e+01;SOR=0.399;STR;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,16:29:99:588,0,343
1	216348764	rs1805049	C	T	2650.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-1.185e+03;SOR=1.445;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2679,196,0
1	216370130	rs386851	T	G	1511.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-1.543e+02;SOR=4.073;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1540,111,0
1	216371934	rs646094	A	C	639.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.008;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=12.500;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.881;SB=-1.352e-01;SOR=3.611;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:668,0,658
1	216390694	rs1324330	C	T	769.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.608;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-0.160;SB=-3.460e+02;SOR=0.555;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,29:55:99:798,0,741
1	216592003	rs4253963	T	C	1498.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=-9.400e+02;SOR=0.730;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1527,114,0
1	216595306	rs10779261	C	T	1300.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-8.360e+02;SOR=0.693;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1329,99,0
1	216692669	rs945453	C	T	990.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-1.794;SB=-5.010e+02;SOR=0.689;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,36:89:99:1019,0,1442
1	216737861	rs11117622	G	T	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=1.254;SB=-1.765e+00;SOR=1.863;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:206,0,174
1	216824505	rs10863261	C	G	767.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.519;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=-0.025;SB=-1.380e+02;SOR=1.706;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,26:43:99:796,0,372
1	217604777	rs7520483	G	A	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.946;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.058;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=-0.071;SB=-1.765e+00;SOR=2.461;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:593,0,334
1	217671771	rs724803	C	G	1032.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.232;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.964;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-0.513;SB=-5.600e+02;SOR=1.040;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,38:72:99:1061,0,903
1	217783810	rs12749938	C	T	1230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.799;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-0.065;SB=-4.390e+02;SOR=0.806;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,44:82:99:1259,0,991
1	217804325	rs944730	G	A	1643.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.374;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=6.959;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-1.245;SB=-7.500e+02;SOR=1.323;VQSLOD=5.83;culprit=DP	GT:AD:DP:GQ:PL	0/1:62,63:125:99:1672,0,1550
1	217804635	rs34121469	T	C	828.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.072;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.156;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=0.347;SB=-2.350e+02;SOR=0.935;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,27:53:99:857,0,727
1	217804955	rs10495062	T	C	432.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.929;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=1.517;SB=-3.501e+01;SOR=0.693;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:461,0,424
1	217824575	rs147538345	TACTC	T	614.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=0.082;SB=-1.870e+02;SOR=1.038;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:652,0,945
1	217842180	rs10495068	T	C	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.424;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.283;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-0.725;SB=-1.920e+02;SOR=1.018;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,16:38:99:446,0,564
1	218023820	rs147406388	C	CA	948.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;QD=28.66;SB=-3.880e+02;SOR=1.127;VQSLOD=4.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:986,60,0
1	218610662	rs11285412	CT	C	204.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.47;RPA=17,16;RU=T;ReadPosRankSum=-1.521;SB=-4.300e+01;SOR=0.719;STR;VQSLOD=5.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,19:62:99:242,0,833
1	219366400	.	T	TG	1276.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.621;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=0.279;POSITIVE_TRAIN_SITE;QD=28.37;RPA=9,10;RU=G;ReadPosRankSum=-0.551;SB=-1.055e+02;SOR=2.540;STR;VQSLOD=2.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,43:52:72:1314,72,0
1	219383848	rs35171262	A	ACTTTTT	4984.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.40;SB=-6.730e+02;SOR=3.575;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:61:99:5022,181,0
1	219383867	rs940571	T	C	2713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6985;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-6.860e+02;SOR=2.598;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2742,205,0
1	219383905	rs940570	A	G	3247.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-1.679e+03;SOR=1.189;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3276,235,0
1	219706428	rs10746385	T	C	3286.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.62;SB=-2.157e+03;SOR=0.710;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3315,241,0
1	220089352	rs2231734	A	C	902.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-1.155e+02;SOR=3.767;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:931,75,0
1	220101005	rs76160931	A	C	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=23.5833;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=0.891;QD=3.92;ReadPosRankSum=0.239;SB=0.00;SOR=0.124;VQSLOD=1.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,7:28:99:138,0,489
1	220101008	rs79951865	A	C	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=32.9065;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=2.303;QD=8.55;ReadPosRankSum=0.608;SB=0.00;SOR=1.609;VQSLOD=1.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,23:34:99:319,0,168
1	220101020	rs199966100	CAAAA	C	1246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;MQRankSum=1.883;QD=23.36;RPA=13,9;RU=A;ReadPosRankSum=-0.757;SB=-3.876e+01;SOR=2.252;STR;VQSLOD=1.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,35:44:12:1283,12,0
1	220142023	rs1061248	C	T	1059.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-2.261e+02;SOR=2.765;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:78:1088,78,0
1	220142070	rs1061242	C	T	1601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-5.100e+02;SOR=2.124;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1630,120,0
1	220145371	rs2795315	T	G	589.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-4.276e+01;SOR=4.174;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:618,45,0
1	220145584	rs1982986	C	T	582.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-1.533e+02;SOR=2.419;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:611,45,0
1	220146481	rs370560375	A	C	348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.131;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-0.264;SB=-8.297e+01;SOR=0.105;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:377,0,318
1	220146873	.	G	GA	277.73	PASS	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.25;RPA=12,13;RU=A;SB=0.00;SOR=4.977;STR;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:16:33:315,33,0
1	220151808	rs35391458	C	CAA	971.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.15;SB=-6.176e+01;SOR=4.294;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:1009,51,0
1	220153332	.	T	TAA	1526.73	PASS	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;RPA=2,4;RU=A;SB=-3.820e+02;SOR=2.235;STR;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1564,99,0
1	220154246	rs35193743	AT	A	413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=0.546;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.55;RPA=12,11;RU=T;ReadPosRankSum=-0.445;SB=0.00;SOR=3.014;STR;VQSLOD=0.516;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,21:28:21:451,0,21
1	220154306	rs11118480	A	C	465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=0.00;SOR=5.136;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:494,36,0
1	220154602	rs1694599	T	C	488.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.08;SB=0.00;SOR=5.283;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:517,39,0
1	220154659	rs56248320	TAAA	T	1351.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.211;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.08;RPA=17,14;RU=A;ReadPosRankSum=-0.893;SB=-1.600e+02;SOR=2.712;STR;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,37:42:94:1353,94,0
1	220155920	rs2133194	G	A	590.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=0.00;SOR=5.784;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:619,48,0
1	220156090	rs2647462	T	C	3419.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-1.886e+03;SOR=1.049;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3448,250,0
1	220156427	rs1391566	T	C	457.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.16;SB=-4.276e+01;SOR=3.767;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:486,36,0
1	220160360	rs2647435	A	G	42.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.89;ReadPosRankSum=-0.389;SB=0.00;SOR=0.180;VQSLOD=9.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:71:71,0,287
1	220160433	rs2647434	A	G	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.273;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.694;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;ReadPosRankSum=0.317;SB=-5.400e+01;SOR=1.270;VQSLOD=7.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,10:31:99:268,0,554
1	220162195	rs2254494	T	C	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.106;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-0.458;SB=-1.765e+00;SOR=1.609;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:350,0,330
1	220178717	.	T	TA	1773.73	PASS	AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.13;RPA=3,4;RU=A;SB=-6.810e+02;SOR=1.270;STR;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1811,150,0
1	220179322	rs2647420	A	T	917.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=0.00;SOR=6.358;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:946,69,0
1	220184150	rs34170326	CA	C	176.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.149;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;MQRankSum=1.005;POSITIVE_TRAIN_SITE;QD=8.85;RPA=17,16;RU=A;ReadPosRankSum=-0.990;SB=0.00;SOR=0.892;STR;VQSLOD=3.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:9,11:23:5:213,5,0
1	220184164	rs28570471	A	G	804.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9981;MLEAC=1;MLEAF=0.500;MQ=60.35;MQ0=0;MQRankSum=0.617;QD=25.96;ReadPosRankSum=-1.750;SB=0.00;SOR=2.376;VQSLOD=1.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,24:31:99:833,0,189
1	220191932	rs76068152	G	A	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DB;DP=38;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=46.7262;MLEAC=1;MLEAF=0.500;MQ=61.96;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.14;ReadPosRankSum=-1.401;SB=-1.321e+01;SOR=0.818;VQSLOD=4.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,4:37:86:86,0,369
1	220191932	.	G	GA	722.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.013;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.96;MQ0=0;MQRankSum=0.783;POSITIVE_TRAIN_SITE;QD=21.26;RPA=14,15;RU=A;ReadPosRankSum=0.110;SB=-1.711e+02;SOR=0.976;STR;VQSLOD=4.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,32:38:50:760,50,0
1	220192171	rs369833630	T	TAA,TAAA	509.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;RPA=12,14,15;RU=A;SB=-7.894e+00;SOR=5.549;STR;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,9,6:15:99:547,158,115,191,0,154
1	220192192	rs34320023	TA	T	224.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQ0=0;MQRankSum=0.877;POSITIVE_TRAIN_SITE;QD=12.49;RPA=16,15;RU=A;ReadPosRankSum=-1.647;SB=-5.197e+01;SOR=0.560;STR;VQSLOD=3.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,14:19:51:262,0,51
1	220192495	rs2245457	C	G	1580.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.54;SB=-3.170e+02;SOR=2.935;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1609,117,0
1	220197545	rs2577159	C	T	962.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-7.597e+01;SOR=4.332;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:991,75,0
1	220197625	rs2230301	G	T	2030.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.60;SB=-1.061e+03;SOR=1.195;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2059,147,0
1	220205704	rs3738339	T	A	508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.424;HaplotypeScore=10.5873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-0.231;SB=-2.100e+02;SOR=0.375;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,22:43:99:537,0,588
1	220205943	rs2789816	G	A	605.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.06;SB=-4.076e+01;SOR=4.294;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:634,48,0
1	220207017	rs2647456	C	T	1085.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-2.341e+02;SOR=2.621;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:87:1114,87,0
1	220208154	rs2789817	C	A	1193.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=0.00;SOR=6.994;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1222,96,0
1	220239448	rs1146773	T	C	1164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.694;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=-0.298;SB=-4.990e+02;SOR=0.810;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,45:75:99:1193,0,727
1	220275378	rs2789788	G	A	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.976;SB=0.00;SOR=0.859;VQSLOD=10.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:160,0,174
1	220332552	rs2789792	C	T	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=1.108;SB=-4.176e+01;SOR=0.293;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:209,0,168
1	220332876	rs2808026	G	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=0.207;SB=0.00;SOR=0.836;VQSLOD=10.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:235,0,173
1	220362857	rs35162828	AT	A	205.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=17.14;RPA=17,16;RU=T;SB=0.00;SOR=5.136;STR;VQSLOD=3.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:35:243,35,0
1	220369745	rs35396665	TA	T	592.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DB;DP=77;ExcessHet=3.0103;FS=6.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.98;RPA=12,11;RU=A;ReadPosRankSum=0.039;SB=-1.700e+02;SOR=0.183;STR;VQSLOD=5.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,32:77:99:630,0,759
1	220374047	rs12129903	A	C	444.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.845;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=8.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.132;SB=-2.570e+02;SOR=0.091;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:473,0,566
1	220490812	rs4846623	G	A	1929.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-1.195e+03;SOR=0.725;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1958,141,0
1	220603310	rs10553491	TGTGA	T	3191.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.14;SB=-6.200e+02;SOR=2.393;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:53:99:3228,157,0
1	220607685	rs1361256	G	A	1794.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-6.940e+02;SOR=1.528;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1823,135,0
1	220607891	rs1338767	A	G	962.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-3.980e+02;SOR=1.302;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:991,72,0
1	220789236	rs2786599	C	T	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.41;SB=-1.871e+02;SOR=1.329;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:412,30,0
1	220808666	rs71794752	CT	C	118.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.42;RPA=18,17;RU=T;ReadPosRankSum=0.304;SB=-3.497e+01;SOR=0.430;STR;VQSLOD=9.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,12:16:45:156,0,45
1	220808921	rs10746403	T	C	1557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-5.010e+02;SOR=1.702;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1586,114,0
1	220824115	rs12123306	G	C	745.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.876;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=0.423;SB=-4.220e+02;SOR=0.741;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,32:82:99:774,0,1486
1	220825523	rs3737296	A	G	2929.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-1.367e+03;SOR=1.274;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2958,217,0
1	220970028	rs2642438	A	G	2111.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.00;SB=-1.070e+03;SOR=0.892;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2140,160,0
1	220971048	rs2807835	G	T	635.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.84;SB=-1.165e+02;SOR=2.833;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:664,51,0
1	220982320	.	C	CA	134.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;DP=32;ExcessHet=3.0103;FS=5.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.49;RPA=11,12;RU=A;ReadPosRankSum=0.272;SB=-2.657e-01;SOR=2.165;STR;VQSLOD=6.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:32:99:172,0,447
1	220986516	rs12144830	C	G	1152.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.50;SB=-8.097e+01;SOR=4.479;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1181,87,0
1	221507141	rs7555947	C	T	689.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;SB=-7.597e+01;SOR=3.716;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:718,54,0
1	221509161	rs6685717	G	C	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.000;SB=-4.276e+01;SOR=0.223;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:161,0,159
1	221509332	rs4382729	G	A	1228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.064;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=4.700;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=-1.206;SB=-5.420e+02;SOR=1.312;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,43:73:99:1257,0,798
1	221509335	rs72746037	A	C	725.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.676;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=4.700;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=1.071;SB=-4.610e+02;SOR=0.314;VQSLOD=7.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,30:73:99:754,0,1269
1	221912361	rs1141714	T	C	2786.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-1.429e+03;SOR=1.255;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2815,202,0
1	221912808	rs1136448	T	C	594.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.255;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=0.126;SB=-3.270e+02;SOR=0.874;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,22:56:99:623,0,940
1	222649491	rs71642766	C	G	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.70;MQ0=1;MQRankSum=0.608;QD=9.98;ReadPosRankSum=0.411;SB=-3.200e+01;SOR=0.892;VQSLOD=2.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:138,0,166
1	222650534	rs71642767	T	C	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.34;MQ0=0;MQRankSum=-1.550;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-0.985;SB=-3.500e+01;SOR=0.892;VQSLOD=3.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:165,0,138
1	222697088	rs3748662	G	A	2233.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-9.880e+02;SOR=1.352;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2262,166,0
1	222700416	rs1487523	C	T	1496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-7.040e+02;SOR=1.244;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1525,114,0
1	222705270	rs4846373	T	C	1117.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SB=-4.800e+02;SOR=1.329;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:84:1146,84,0
1	222712354	rs4846764	C	T	917.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-1.653e+02;SOR=3.180;VQSLOD=4.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:946,72,0
1	222713208	rs35746652	G	A	914.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-7.797e+01;SOR=4.174;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:943,72,0
1	222713503	rs3748664	C	G	3536.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-1.820e+03;SOR=1.002;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3565,262,0
1	222713631	rs3748666	G	C	2595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-1.429e+03;SOR=0.887;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2624,190,0
1	222713750	rs3828079	G	A	1465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-4.710e+02;SOR=1.714;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1494,114,0
1	222715247	rs11487812	A	G	428.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.40;SB=-4.176e+01;SOR=3.611;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:457,33,0
1	222721162	rs183510189	G	A	1195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.212;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=6.110;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-1.565;SB=-4.900e+02;SOR=0.991;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,46:109:99:1224,0,1676
1	222721288	rs4846382	C	T	2452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-1.212e+03;SOR=1.164;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2481,187,0
1	222734628	rs10495195	C	T	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=-0.497;SB=0.00;SOR=0.693;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:119,0,178
1	222737265	rs35877231	G	T	1345.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.04;SB=-6.630e+02;SOR=1.298;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1374,99,0
1	222737266	.	A	G	858.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.639;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.53;ReadPosRankSum=1.191;SB=-3.470e+02;SOR=0.950;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,29:49:99:887,0,398
1	222737481	rs17464254	C	G	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.296;HaplotypeScore=2.4011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.53;ReadPosRankSum=2.199;SB=-6.000e+01;SOR=0.197;VQSLOD=5.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,5:30:99:134,0,711
1	222742676	rs4846766	T	C	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.427;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.900;SB=-1.850e+02;SOR=0.283;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:474,0,356
1	222761649	rs4525045	C	A	1124.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=0.00;SOR=6.869;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1153,90,0
1	222798106	rs3008617	G	A	1756.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-9.480e+02;SOR=1.071;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1785,129,0
1	222802006	rs2936053	A	G	1957.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.35;SB=-9.060e+02;SOR=1.238;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1986,144,0
1	222802376	rs2936052	A	G	1558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.199;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=4.752;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=2.620;SB=-7.630e+02;SOR=1.199;VQSLOD=6.61;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:52,56:108:99:1587,0,1437
1	222802926	rs3008620	C	T	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-0.164;SB=-9.800e+01;SOR=0.693;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:335,0,317
1	222803204	rs2936051	A	G	687.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=0.050;SB=-2.770e+02;SOR=0.762;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,26:75:99:716,0,1283
1	222805698	rs3008622	T	G	636.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.360;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=1.806;SB=-2.840e+02;SOR=0.148;VQSLOD=7.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,24:42:99:665,0,569
1	222825403	rs3002150	G	A	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-0.155;SB=-9.200e+01;SOR=1.085;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:17:99:258,0,207
1	222825415	rs34851033	G	A	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=0.056;SB=-1.020e+02;SOR=0.892;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:251,0,208
1	222825761	rs2936019	G	A	84.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.04;ReadPosRankSum=-1.241;SB=-1.905e+01;SOR=0.655;VQSLOD=8.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,5:21:99:113,0,400
1	222833601	rs3002153	T	C	2659.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-1.567e+03;SOR=0.739;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2688,202,0
1	222838216	rs2936026	C	T	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.646;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=7.204;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-0.237;SB=-2.190e+02;SOR=0.094;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,16:26:99:431,0,311
1	222885927	.	G	A	898.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.764;DP=50;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.98;ReadPosRankSum=0.475;SB=-1.765e+00;SOR=2.155;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:927,0,606
1	222886119	rs3811465	A	G	2645.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=10.425;DB;DP=204;Dels=0.00;ExcessHet=3.0103;FS=7.084;HaplotypeScore=4.3725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.929;SB=-1.193e+03;SOR=1.201;VQSLOD=5.27;culprit=DP	GT:AD:DP:GQ:PL	0/1:101,102:204:99:2674,0,2443
1	222891949	rs72102042	CTT	C	563.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=1.320;SB=0.00;SOR=0.874;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:601,0,520
1	222902994	rs200440780	T	C	725.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4062;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=-1.204;QD=9.94;ReadPosRankSum=0.434;SB=-3.890e+02;SOR=0.713;VQSLOD=1.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,29:73:99:754,0,1136
1	222919895	rs2378607	T	G	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.342;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.93;ReadPosRankSum=0.792;SB=-3.200e+01;SOR=0.382;VQSLOD=9.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:129,0,323
1	222923001	rs2068814	A	G	608.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=7.336;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=1.516;SB=-3.080e+02;SOR=0.648;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,25:58:99:637,0,1015
1	222923183	rs147644388	A	C	750.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.661;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.950;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-0.957;SB=-3.610e+02;SOR=0.844;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,29:65:99:779,0,900
1	222923351	rs6683071	A	G	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.928;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.211;SB=-8.700e+01;SOR=1.371;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:281,0,315
1	223116472	rs2609383	G	A	1874.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=8.366;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=0.438;SB=-8.610e+02;SOR=1.005;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,62:99:99:1903,0,941
1	223116474	rs2789975	G	T	1876.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.014;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=8.366;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=0.402;SB=-8.250e+02;SOR=1.005;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,62:99:99:1905,0,957
1	223152868	rs1815607	G	A	688.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=0.00;SOR=5.994;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:717,57,0
1	223156382	rs2926159	C	T	964.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.56;SB=-3.600e+02;SOR=2.115;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:72:993,72,0
1	223164547	rs2789957	A	T	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.142;SB=0.00;SOR=0.569;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:185,0,235
1	223168213	rs2609359	T	C	626.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.939;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.254;HaplotypeScore=6.9274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=1.145;SB=-2.610e+02;SOR=1.122;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,26:61:99:655,0,846
1	223176275	rs61738819	G	A	1216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.351;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-0.919;SB=-5.600e+02;SOR=0.660;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,47:110:99:1245,0,1765
1	223177574	rs2609355	A	G	1619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=2.391;HaplotypeScore=2.9465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.403;SB=-9.120e+02;SOR=0.479;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,58:115:99:1648,0,1670
1	223178478	rs9441940	G	A	2300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;DB;DP=183;Dels=0.00;ExcessHet=3.0103;FS=0.546;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-1.005;SB=-1.332e+03;SOR=0.641;VQSLOD=6.04;culprit=DP	GT:AD:DP:GQ:PL	0/1:98,85:183:99:2329,0,2469
1	223178561	rs9441941	A	C	2227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.904;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=4.526;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.943;SB=-1.316e+03;SOR=0.443;VQSLOD=6.64;culprit=DP	GT:AD:DP:GQ:PL	0/1:82,85:167:99:2256,0,2393
1	223283851	rs1053954	T	C	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.000;SB=-1.080e+02;SOR=0.560;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:463,0,524
1	223283910	rs7512943	A	G	2279.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-7.830e+02;SOR=2.015;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2308,166,0
1	223284528	rs5744174	A	G	920.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.079;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.659;SB=-4.740e+02;SOR=0.658;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,32:67:99:949,0,976
1	223285200	rs5744168	G	A	1143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.852;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-1.417;SB=-5.830e+02;SOR=0.676;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,43:89:99:1172,0,1394
1	223285833	rs45528236	G	T	1890.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=1.746;SB=-9.520e+02;SOR=0.736;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,71:123:99:1919,0,1446
1	223286551	rs1773727	A	C	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.908;SB=0.00;SOR=0.330;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:132,0,240
1	223397037	rs851149	T	C	652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.896;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.639;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.440;SB=-1.420e+02;SOR=0.283;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,23:53:99:681,0,908
1	223711684	rs113435319	C	G	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=0.566;SB=0.00;SOR=1.765;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:350,0,123
1	223712863	rs75851519	C	A	836.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.583;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=11.964;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=1.669;SB=-2.510e+02;SOR=1.683;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,27:45:99:865,0,527
1	223715248	rs36108579	GT	G	633.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;DB;DP=44;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;RPA=2,1;RU=T;ReadPosRankSum=0.517;SB=-2.880e+02;SOR=0.758;STR;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,18:44:99:671,0,1014
1	223716252	rs74145906	G	A	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.23;ReadPosRankSum=-0.547;SB=-3.677e+01;SOR=0.093;VQSLOD=7.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:99:127,0,256
1	223716349	rs4072246	G	A	792.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=0.865;SB=-3.150e+02;SOR=0.602;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,29:48:99:821,0,449
1	223717379	rs61823524	A	C	905.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-3.150e+02;SOR=1.942;VQSLOD=5.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:69:934,69,0
1	223717484	rs34158997	G	A	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.307;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=0.093;SB=-3.220e+02;SOR=1.010;VQSLOD=7.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,24:55:99:563,0,794
1	223718462	rs61823525	G	A	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.050;SB=-1.390e+02;SOR=0.250;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:327,0,144
1	223718518	rs61823552	C	A	384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.769;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-0.104;SB=-9.900e+01;SOR=1.042;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:413,0,452
1	223718651	rs61823553	G	A	527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=1.770;SB=-2.360e+02;SOR=0.551;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:556,0,517
1	223718670	rs61823554	G	A	485.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.138;SB=-2.030e+02;SOR=0.540;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:514,0,506
1	223722646	.	T	TA	108.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;RPA=12,13;RU=A;ReadPosRankSum=1.001;SB=-3.177e+01;SOR=0.569;STR;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:44:146,0,44
1	223722780	rs34606532	G	A	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.773;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=4.437;HaplotypeScore=1.7873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=0.336;SB=-4.010e+02;SOR=0.263;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,35:57:99:944,0,557
1	223797957	rs80294960	G	C	1054.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.596;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=4.713;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.912;SB=-3.720e+02;SOR=1.326;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,37:75:99:1083,0,962
1	223799857	rs34786756	C	T	3558.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-2.073e+03;SOR=0.786;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3587,265,0
1	223799871	rs35116708	C	T	1760.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=4.391;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=1.105;SB=-9.830e+02;SOR=0.522;VQSLOD=7.38;culprit=DP	GT:AD:DP:GQ:PL	0/1:59,62:122:99:1789,0,1546
1	223803536	rs74145918	G	A	763.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=1.633;SB=-3.330e+02;SOR=1.136;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,30:65:99:792,0,962
1	223807239	rs34693465	C	G	1217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.370;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.836;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.998;SB=-4.580e+02;SOR=0.897;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,44:88:99:1246,0,1301
1	223808140	rs74145935	G	T	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-0.462;SB=0.00;SOR=0.693;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:198,0,196
1	223810318	rs61825177	G	A	847.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.394;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.790;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=0.423;SB=-2.770e+02;SOR=0.379;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,29:50:99:876,0,555
1	223813586	rs35539373	G	T	623.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.990;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.235;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=1.461;SB=-3.690e+02;SOR=0.269;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:652,0,681
1	223814543	rs35469136	T	G	213.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=-0.062;SB=0.00;SOR=0.693;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:242,0,230
1	223814671	rs61825208	A	T	506.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.684;SB=-2.680e+02;SOR=0.704;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,20:35:99:535,0,408
1	223815575	rs34187970	G	A	864.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-3.080e+02;SOR=1.697;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:893,66,0
1	223816267	rs74145944	A	T	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.202;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=1.304;SB=-2.290e+02;SOR=0.519;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:480,0,650
1	223816322	rs66602040	A	G	1810.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.16;SB=-7.870e+02;SOR=1.201;VQSLOD=5.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1839,135,0
1	223816347	rs61825210	A	G	1582.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-7.360e+02;SOR=1.157;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1611,126,0
1	223816577	rs61825211	T	C	337.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=0.00;SOR=4.804;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:366,30,0
1	223841836	rs2105405	C	T	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.235;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=0.794;SB=0.00;SOR=0.223;VQSLOD=9.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:153,0,391
1	223841877	rs2105406	C	G	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.483;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.31;ReadPosRankSum=-1.413;SB=-7.000e+01;SOR=0.169;VQSLOD=7.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:22:99:189,0,480
1	223841913	rs11585533	C	A	449.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.618;SB=-1.650e+02;SOR=1.022;VQSLOD=10.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,18:27:99:478,0,254
1	223900408	rs25655	C	G	1743.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-9.340e+02;SOR=1.061;VQSLOD=5.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1772,126,0
1	223905532	rs17596	G	A	2938.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-1.786e+03;SOR=0.782;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2967,220,0
1	223931648	rs1222137	T	C	1350.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-3.970e+02;SOR=2.038;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1379,102,0
1	223934720	rs17600	G	A	3468.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-1.985e+03;SOR=0.927;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3497,259,0
1	223938818	rs2298255	G	A	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=-0.257;SB=0.00;SOR=0.941;VQSLOD=10.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:305,0,236
1	223954080	rs17599	A	C	908.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=1.984;SB=-4.240e+02;SOR=0.777;VQSLOD=8.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,37:87:99:937,0,1369
1	224051926	rs7519753	T	C	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.77;ReadPosRankSum=-0.776;SB=-6.000e+01;SOR=0.905;VQSLOD=8.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:99:123,0,284
1	224052192	rs6696120	G	C	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.339;SB=-1.360e+02;SOR=0.892;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:289,0,323
1	224302154	rs377186292	T	TGAG	2246.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;RPA=1,2;RU=GAG;SB=-8.380e+02;SOR=1.329;STR;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:40:99:2284,114,0
1	224302230	rs2280291	C	G	627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=0.00;SOR=5.670;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:656,48,0
1	224318151	rs33933441	T	TTTG	1983.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.60;RPA=1,2;RU=TTG;SB=-3.631e+02;SOR=3.026;STR;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:37:99:2021,108,0
1	224321984	rs1472167	C	T	1632.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-5.560e+02;SOR=2.137;VQSLOD=5.66;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1661,120,0
1	224345012	rs7543762	G	A	295.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-3.677e+01;SOR=2.303;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:324,24,0
1	224437889	rs78473436	A	G	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.380;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.693;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.847;SB=-3.190e+02;SOR=0.327;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,22:46:99:580,0,603
1	224444628	rs10799556	C	T	1510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-6.800e+02;SOR=1.203;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1539,111,0
1	224482216	rs2404783	T	C	675.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=0.00;SOR=6.091;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:704,60,0
1	224491264	rs4654018	T	A	474.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=0.00;SOR=5.283;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:503,39,0
1	224492381	rs7522125	C	T	1157.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-2.620e+02;SOR=2.712;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1186,87,0
1	224492746	rs3754090	C	T	1099.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.18;SB=-6.920e+02;SOR=0.892;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:81:1128,81,0
1	224495852	rs7534447	C	T	3292.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-1.818e+03;SOR=0.880;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3321,247,0
1	224505570	.	T	TAA	566.73	PASS	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;RPA=2,4;RU=A;SB=-1.455e+02;SOR=2.147;STR;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:604,39,0
1	224514275	rs4653578	G	A	406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=0.00;SOR=5.136;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:435,33,0
1	224517842	rs2896990	C	T	1658.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-7.990e+02;SOR=1.244;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1687,126,0
1	224517907	rs4146965	A	T	1072.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.23;SB=-5.310e+02;SOR=1.329;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:81:1101,81,0
1	224544529	rs7517754	A	G	485.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;SB=0.00;SOR=3.912;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:514,39,0
1	224600910	rs10916612	C	A	346.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.890;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6026;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=3.883;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=1.616;SB=-1.901e+02;SOR=0.446;VQSLOD=2.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,13:17:3:373,3,0
1	224621368	rs2405033	G	C	1223.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-3.200e+02;SOR=2.432;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1252,90,0
1	224762167	rs6426141	C	T	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=0.169;SB=-1.710e+02;SOR=0.368;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:58:266,0,58
1	224805112	rs1532557	C	T	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=-1.329;SB=-1.765e+00;SOR=0.941;VQSLOD=9.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:118,0,252
1	225117280	rs12090519	C	T	1112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.052;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=5.189;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.314;SB=-4.250e+02;SOR=1.209;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,45:98:99:1141,0,1453
1	225147784	rs12093545	G	A	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=-0.084;SB=0.00;SOR=0.330;VQSLOD=9.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:120,0,230
1	225148112	.	C	CT	484.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=1.493;QD=17.31;RPA=1,2;RU=T;ReadPosRankSum=0.621;SB=-1.764e+00;SOR=1.721;STR;VQSLOD=1.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:30:99:522,0,530
1	225152066	rs12095812	A	G	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.525;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.439;SB=-3.500e+01;SOR=0.412;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:308,0,432
1	225230608	rs2501107	C	T	1247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.813;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-1.387;SB=-6.380e+02;SOR=0.767;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,47:92:99:1276,0,1275
1	225237850	rs2501086	A	C	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.672;SB=0.00;SOR=0.495;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:221,0,312
1	225266966	rs3105559	C	G	785.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.885;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.950;HaplotypeScore=6.7878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.414;SB=-4.670e+02;SOR=0.853;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,31:72:99:814,0,1098
1	225268343	rs3128651	A	G	850.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.842;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-0.031;SB=-4.690e+02;SOR=0.576;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,32:86:99:879,0,1425
1	225268346	rs3128652	G	A	842.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=-0.213;SB=-4.510e+02;SOR=0.604;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,32:85:99:871,0,1391
1	225270409	rs3128655	A	T	967.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.157;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=5.685;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=0.680;SB=-5.770e+02;SOR=0.319;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,42:87:99:996,0,1309
1	225273248	rs3128658	G	T	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.888;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.850;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=0.633;SB=-1.020e+02;SOR=0.283;VQSLOD=7.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,10:26:99:266,0,477
1	225273633	rs3105565	T	A	460.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=-0.278;SB=0.00;SOR=1.981;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,14:19:92:489,0,92
1	225305529	rs12080062	C	T	1014.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.840;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.101;SB=-5.110e+02;SOR=0.820;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,38:81:99:1043,0,1046
1	225306675	rs12066443	A	C	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.3989;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=0.668;POSITIVE_TRAIN_SITE;QD=4.99;ReadPosRankSum=0.160;SB=-5.150e-01;SOR=1.329;VQSLOD=3.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:18:99:118,0,372
1	225311463	rs7533311	A	G	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=0.676;SB=0.00;SOR=0.990;VQSLOD=9.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,12:21:99:419,0,282
1	225335028	.	A	AT	571.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DP=34;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=61.26;MQ0=0;MQRankSum=1.491;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.44;RPA=4,5;RU=T;ReadPosRankSum=0.021;SB=-1.611e+02;SOR=0.278;STR;VQSLOD=0.295;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,21:34:99:609,0,223
1	225335061	.	G	GT	119.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.55;RPA=10,11;RU=T;ReadPosRankSum=0.620;SB=0.00;SOR=0.693;STR;VQSLOD=9.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,7:14:99:157,0,135
1	225346843	rs117864270	G	A	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.071;SB=-2.690e+02;SOR=0.606;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,20:49:99:565,0,773
1	225346975	rs1480101	C	G	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.178;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.217;SB=-2.870e+02;SOR=1.051;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,24:62:99:690,0,1130
1	225380623	rs114945420	G	A	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.207;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.067;SB=-4.176e+01;SOR=0.113;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:265,0,422
1	225393587	rs12097990	C	T	613.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.796;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.214;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-1.533;SB=-2.060e+02;SOR=0.310;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,24:44:99:642,0,592
1	225394002	rs12077485	T	C	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=0.755;SB=0.00;SOR=0.223;VQSLOD=9.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:92:92,0,207
1	225438236	.	C	T	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.748;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.897;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.652;SB=-6.100e+01;SOR=1.609;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,10:23:99:281,0,339
1	225439988	rs630120	T	C	1222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.077;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-1.011;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.015;SB=-6.280e+02;SOR=0.671;VQSLOD=2.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,45:93:99:1251,0,1302
1	225445652	rs670255	G	T	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-0.207;SB=-3.100e+01;SOR=1.688;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:212,0,155
1	225460626	rs656649	T	A	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.169;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=1.442;SB=-3.100e+01;SOR=1.421;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:403,0,343
1	225465168	.	A	G	650.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.093;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-0.131;SB=-3.960e+02;SOR=0.402;VQSLOD=6.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,28:69:99:679,0,1053
1	225477491	rs12024361	C	T	121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=-0.057;SB=0.00;SOR=0.223;VQSLOD=9.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:150,0,355
1	225477546	rs12042076	A	C	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=-1.084;SB=-6.200e+01;SOR=0.392;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:262,0,418
1	225477793	rs12042900	T	G	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;DB;DP=34;Dels=0.03;ExcessHet=3.0103;FS=4.400;HaplotypeScore=1.9662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=0.328;SB=-1.250e+02;SOR=0.126;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:373,0,587
1	225492545	rs1995482	A	G	114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.65;ReadPosRankSum=1.412;SB=-1.765e+00;SOR=0.892;VQSLOD=9.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:143,0,307
1	225492845	rs12034925	C	T	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=-0.348;SB=-5.500e+01;SOR=0.340;VQSLOD=9.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,8:20:99:201,0,329
1	225506262	rs4653418	G	A	930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.453;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.051;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.470;SB=-3.580e+02;SOR=0.456;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,35:70:99:959,0,1031
1	225510641	rs1532771	T	C	423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=0.00;SOR=4.977;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:452,33,0
1	225511905	rs10799300	T	C	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.999;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.647;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=1.543;SB=-5.700e+01;SOR=1.565;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,16:39:99:469,0,652
1	225512083	rs12032942	A	G	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.308;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=11.137;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.26;ReadPosRankSum=-1.387;SB=-1.726e-02;SOR=3.258;VQSLOD=5.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,9:34:99:275,0,704
1	225512402	rs75859387	GT	G	929.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;DB;DP=66;ExcessHet=3.0103;FS=3.942;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=1.301;POSITIVE_TRAIN_SITE;QD=14.30;RPA=5,4;RU=T;ReadPosRankSum=-0.271;SB=-2.020e+02;SOR=1.421;STR;VQSLOD=0.306;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,36:66:99:967,0,809
1	225519445	rs78032721	G	T	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-1.186;SB=0.00;SOR=0.593;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:266,0,262
1	225525299	.	G	GA	355.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;DP=22;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=0.808;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.94;RPA=6,7;RU=A;ReadPosRankSum=0.635;SB=-9.951e+01;SOR=0.132;STR;VQSLOD=0.084;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,14:22:99:393,0,141
1	225528183	rs3856145	C	A	575.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SB=-1.603e+02;SOR=2.179;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:604,45,0
1	225533684	rs6667999	A	G	604.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-1.175e+02;SOR=2.833;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:633,51,0
1	225533931	rs17522489	A	G	948.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=4.405;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.986;SB=-6.290e+02;SOR=0.393;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,39:79:99:977,0,1029
1	225534219	rs7527925	T	C	1660.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-9.840e+02;SOR=0.846;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1689,120,0
1	225534348	rs7535953	G	A	794.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-2.401e+02;SOR=2.215;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:823,60,0
1	225539665	rs3856150	T	A	301.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.43;SB=-8.097e+01;SOR=2.494;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:330,24,0
1	225545301	rs66461168	A	AATATGTGATAT	1129.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.498;SB=0.00;SOR=0.465;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:1167,0,1463
1	225545580	rs12745950	A	C	1433.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.723;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=1.843;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-0.252;SB=-2.980e+02;SOR=0.946;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:65,53:118:99:1462,0,1801
1	225545588	rs34993311	A	G	1337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.529;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=1.943;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-0.245;SB=-2.850e+02;SOR=0.936;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,48:105:99:1366,0,1566
1	225546221	rs368426392	T	C	102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.821;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.769;SB=-9.800e+01;SOR=0.330;VQSLOD=4.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,7:23:99:131,0,406
1	225552624	rs10495239	G	A	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.863;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.805;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.51;ReadPosRankSum=0.720;SB=-3.500e+01;SOR=1.499;VQSLOD=6.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,7:27:99:177,0,599
1	225552650	rs12563830	C	T	111.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.541;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.66;ReadPosRankSum=-1.843;SB=-4.900e+01;SOR=0.859;VQSLOD=7.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,7:24:99:140,0,521
1	225555512	rs11578981	C	T	1122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.825;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=2.485;HaplotypeScore=4.4002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=0.697;SB=-6.140e+02;SOR=0.970;VQSLOD=7.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:71,44:115:99:1151,0,1874
1	225555602	rs12737248	T	G	873.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.799;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=6.755;HaplotypeScore=2.4696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=1.295;SB=-1.720e+02;SOR=1.655;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,29:83:99:902,0,1461
1	225562385	rs10915816	C	T	992.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-0.080;SB=-2.800e+02;SOR=0.947;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,37:78:99:1021,0,1158
1	225565015	rs3856154	T	C	272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=11.504;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=-1.292;SB=-7.100e+01;SOR=1.897;VQSLOD=6.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,12:33:99:301,0,560
1	225565073	rs3856155	C	T	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.119;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.615;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=0.310;SB=-1.690e+02;SOR=0.119;VQSLOD=7.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,12:29:99:241,0,469
1	225569241	rs950210	T	G	968.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.263;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.329;SB=-4.470e+02;SOR=0.657;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,39:79:99:997,0,1205
1	225576058	rs6679430	T	C	537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.841;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=12.248;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-1.141;SB=-3.200e+01;SOR=2.526;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,20:54:99:566,0,950
1	225576311	rs10753405	A	G	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.783;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=0.207;SB=-3.777e+01;SOR=0.317;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:360,0,260
1	225577648	rs12134158	C	T	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.284;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-0.722;SB=-3.777e+01;SOR=0.264;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:341,0,295
1	225586737	.	A	AT	60.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.57;RPA=14,15;RU=T;ReadPosRankSum=0.302;SB=-1.773e+00;SOR=0.963;STR;VQSLOD=7.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:98:98,0,222
1	225601647	rs3766928	C	T	828.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.070;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.157;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-0.934;SB=-4.810e+02;SOR=0.746;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,31:49:99:857,0,521
1	225607144	rs2230419	C	T	485.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-1.095;SB=-1.640e+02;SOR=0.297;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:514,0,575
1	225609884	rs1056608	A	G	1138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.097;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-0.673;SB=-6.460e+02;SOR=0.642;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,44:86:99:1167,0,1034
1	225611661	rs1056607	C	T	1015.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.549;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=6.266;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-0.430;SB=-3.760e+02;SOR=1.445;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,37:73:99:1044,0,966
1	225611845	rs1340867	C	T	565.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.937;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=-0.741;SB=-2.601e+01;SOR=1.670;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:594,0,357
1	225685621	rs145776060	TAAG	T	735.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.29;RPA=2,1;RU=AAG;ReadPosRankSum=1.321;SB=-1.590e+02;SOR=0.507;STR;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:35:99:773,0,977
1	225965803	rs3738037	C	A	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.158;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=1.295;SB=-3.360e+02;SOR=0.614;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:680,0,555
1	225974486	.	T	TG	345.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;RPA=1,2;RU=G;ReadPosRankSum=1.407;SB=-1.200e+02;SOR=0.602;STR;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:25:99:383,0,543
1	225974531	rs4653433	A	G	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.546;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=0.000;SB=-2.300e+02;SOR=0.495;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:31:99:328,0,338
1	225990958	.	G	C	1043.77	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.62;SB=-2.800e+02;SOR=2.147;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1072,78,0
1	225990959	rs10158302	T	C	1006.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-2.590e+02;SOR=2.147;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1035,78,0
1	225991093	.	A	G	1743.77	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=30.06;SB=-7.950e+02;SOR=1.278;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1772,129,0
1	225991176	rs4653685	T	G	793.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-2.471e+02;SOR=2.215;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:822,60,0
1	226019633	rs1051740	T	C	845.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.843;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.029;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.657;SB=-4.580e+02;SOR=0.526;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:56:99:874,0,653
1	226019774	rs2260863	G	C	675.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-1.245e+02;SOR=3.056;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:704,51,0
1	226026616	rs2292567	G	A	1653.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.132;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=4.938;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-0.678;SB=-8.910e+02;SOR=0.348;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,62:110:99:1682,0,1272
1	226036309	rs360063	A	G	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.447;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.155;SB=-2.160e+02;SOR=0.460;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:441,0,310
1	226044489	.	G	GC	975.73	PASS	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;RPA=4,5;RU=C;SB=-5.040e+02;SOR=0.693;STR;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:27:78:1013,78,0
1	226044766	rs9919303	G	A	73.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.95;ReadPosRankSum=1.598;SB=-5.600e+01;SOR=0.327;VQSLOD=9.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,5:25:99:102,0,605
1	226046648	rs66831419	ATGTGTGTGTG	A	1072.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;DB;DP=20;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=0.596;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.88;RPA=24,19;RU=TG;ReadPosRankSum=-0.774;SB=-3.022e+02;SOR=0.191;STR;VQSLOD=0.112;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,15:20:99:1110,0,129
1	226048744	rs34700682	CA	C	2587.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DB;DP=136;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.60;RPA=2,1;RU=A;ReadPosRankSum=0.369;SB=-1.000e+03;SOR=0.879;STR;VQSLOD=7.25;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,67:136:99:2625,0,2559
1	226053805	rs7515156	G	A	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.451;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.369;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-0.136;SB=-3.570e+02;SOR=0.200;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,22:45:99:628,0,563
1	226054333	rs45492299	G	A	1013.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=-0.508;SB=-7.370e+02;SOR=0.666;VQSLOD=8.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:71,46:117:99:1042,0,1828
1	226054656	rs360084	G	A	837.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-1.205e+02;SOR=3.258;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:866,66,0
1	226054681	rs360085	T	A	1012.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-7.497e+01;SOR=4.332;VQSLOD=3.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:1041,78,0
1	226054714	rs2292563	G	A	719.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.107;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.900;HaplotypeScore=1.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=-0.537;SB=-1.460e+02;SOR=0.399;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,24:36:99:748,0,299
1	226055595	rs2292564	G	A	1051.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.722;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=2.431;SB=-3.630e+02;SOR=0.593;VQSLOD=8.86;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:33,37:70:99:1080,0,1050
1	226058534	rs360090	C	G	610.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-4.276e+01;SOR=4.294;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:639,48,0
1	226075410	rs57114136	GC	G	230.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;RPA=7,6;RU=C;ReadPosRankSum=0.899;SB=-5.600e+01;SOR=0.836;STR;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:21:99:268,0,268
1	226125543	.	G	GA	512.73	PASS	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;RPA=1,2;RU=A;SB=0.00;SOR=5.136;STR;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:36:550,36,0
1	226127443	rs74578461	G	C	634.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.503;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4930;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-1.524;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-0.869;SB=-1.320e+02;SOR=0.354;VQSLOD=2.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,22:49:99:663,0,871
1	226179909	rs1885254	A	G	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=0.00;SOR=4.804;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:30:402,30,0
1	226180813	rs151278173	TTTC	T	1160.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;QD=27.00;SB=-2.741e+02;SOR=2.215;VQSLOD=3.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:31:74:1198,74,0
1	226251964	.	C	T	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-1.097;SB=-6.001e+01;SOR=0.269;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:142,0,178
1	226252232	rs2036870	C	T	472.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-4.176e+01;SOR=3.912;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:501,39,0
1	226253127	rs1511056	T	G	623.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=0.00;SOR=5.670;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:652,48,0
1	226253316	rs1849032	G	T	1208.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-5.840e+02;SOR=0.941;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:93:1237,93,0
1	226334578	rs1219666	G	A	971.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-1.205e+02;SOR=3.690;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:1000,72,0
1	226474132	rs10799347	G	A	666.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-1.533e+02;SOR=2.636;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:695,51,0
1	226485327	.	A	AT	1122.73	PASS	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;RPA=6,7;RU=T;SB=-1.961e+02;SOR=3.026;STR;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1160,108,0
1	226488826	rs11577454	A	G	1266.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-2.441e+02;SOR=3.258;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1295,102,0
1	226549498	rs2271347	G	A	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.653;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=-0.026;SB=-1.640e+02;SOR=1.206;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:407,0,373
1	226550553	rs34228047	ATT	A	371.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.362;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.59;RPA=16,14;RU=T;ReadPosRankSum=-1.604;SB=-7.097e+01;SOR=1.473;STR;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:14:34:409,34,0
1	226550924	rs747657	G	C	1137.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-5.360e+02;SOR=1.308;VQSLOD=5.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1166,84,0
1	226551529	rs752307	C	G	362.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.44;SB=0.00;SOR=4.804;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:391,30,0
1	226553484	rs373801492	AAC	A	262.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-4.176e+01;SOR=3.767;VQSLOD=3.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:37:300,37,0
1	226553490	rs34917861	C	A	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=4.150;HaplotypeScore=7.8647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.67;ReadPosRankSum=2.830;SB=-1.765e+00;SOR=2.636;VQSLOD=4.47;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:245,0,131
1	226553491	rs200302262	AAAC	A	384.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.61;ReadPosRankSum=-0.401;SB=-5.076e+01;SOR=2.303;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:13:15:422,15,0
1	226553494	.	C	CA	281.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.885;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.67;RPA=10,11;RU=A;ReadPosRankSum=-0.403;SB=-2.977e+01;SOR=2.303;STR;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:13:33:319,33,0
1	226556094	rs1805400	T	C	1136.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-5.710e+02;SOR=1.270;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1165,84,0
1	226564691	rs3219090	T	C	2088.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-4.380e+02;SOR=2.910;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2117,154,0
1	226566726	rs907190	A	C	1096.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-3.330e+02;SOR=2.049;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1125,81,0
1	226567172	rs2271345	A	C	1119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.045;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=2.070;SB=-6.370e+02;SOR=0.648;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,39:79:99:1148,0,990
1	226568665	rs1805410	T	C	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=4.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=-1.597;SB=-1.765e+00;SOR=2.636;VQSLOD=6.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:275,0,160
1	226570840	rs1805415	T	C	1432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-6.900e+02;SOR=1.203;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1461,105,0
1	226578099	rs1805403	T	C	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.007;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.022;SB=-3.377e+01;SOR=0.141;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:209,0,266
1	226626574	rs7527596	C	T	463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.28;SB=-2.391e+02;SOR=1.371;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:36:492,36,0
1	226725814	rs2282427	G	A	1316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=1.965;SB=-5.670e+02;SOR=0.614;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,51:102:99:1345,0,1367
1	226789564	rs55767921	A	G	756.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.094;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.476;SB=-2.330e+02;SOR=0.610;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,30:75:99:785,0,1233
1	226825341	rs2236604	G	A	829.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.911;HaplotypeScore=2.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-1.145;SB=-3.710e+02;SOR=0.837;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,32:71:99:858,0,950
1	226835214	rs1144835	A	G	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.067;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.193;SB=-1.765e+00;SOR=1.179;VQSLOD=10.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:268,0,381
1	226836590	rs2298169	A	G	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-1.901;SB=-9.000e+01;SOR=1.179;VQSLOD=7.68;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,9:20:99:245,0,314
1	226923146	rs11337528	GT	G	1421.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.91;RPA=2,1;RU=T;ReadPosRankSum=0.778;SB=-6.430e+02;SOR=0.644;STR;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,38:68:99:1459,0,1158
1	226923396	rs56095953	G	A	874.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.855;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-1.698;SB=-4.010e+02;SOR=0.765;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,32:79:99:903,0,1335
1	226923505	rs708776	G	T	2891.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-1.752e+03;SOR=0.874;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2920,211,0
1	226923938	rs6667260	A	C	2768.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-1.305e+03;SOR=1.220;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2797,202,0
1	226924196	rs3754413	C	T	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.475;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.659;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=2.137;SB=-2.160e+02;SOR=1.179;VQSLOD=7.69;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,19:42:99:501,0,653
1	226924642	rs3754415	C	T	1419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.025;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=7.827;HaplotypeScore=4.5657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=1.672;SB=-9.300e+02;SOR=0.232;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,54:83:99:1448,0,826
1	226924940	rs77775944	C	T	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.585;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-0.399;SB=-2.200e+02;SOR=0.385;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:468,0,340
1	226925167	rs138545670	G	A	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.508;SB=-9.400e+01;SOR=0.631;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,7:19:99:204,0,297
1	226925239	rs117185933	G	A	32.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.28;ReadPosRankSum=0.303;SB=-3.100e+01;SOR=0.307;VQSLOD=9.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:61:61,0,175
1	227068242	rs369361698	GGACA	G	670.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=1.809;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.54;RPA=2,1;RU=GACA;ReadPosRankSum=-2.417;SB=0.00;SOR=1.911;STR;VQSLOD=2.22;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,11:15:99:708,0,237
1	227069677	rs11405	T	C	4235.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-1.978e+03;SOR=1.398;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4264,325,0
1	227069737	rs6759	C	T	1128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.364;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-1.262;SB=-2.320e+02;SOR=0.693;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,41:82:99:1157,0,1340
1	227071364	rs1295643	G	A	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.839;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.599;SB=-1.765e+00;SOR=1.501;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:418,0,443
1	227071377	rs1295644	T	C	1385.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-2.071e+02;SOR=3.312;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1414,105,0
1	227071525	rs1046240	C	T	1795.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.617;HaplotypeScore=6.7776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-0.599;SB=-1.202e+03;SOR=0.569;VQSLOD=7.26;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,77:151:99:1824,0,1703
1	227073410	rs2236910	G	C	2670.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-1.159e+03;SOR=1.501;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2699,199,0
1	227078955	rs2802267	T	C	734.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-1.483e+02;SOR=2.636;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:763,57,0
1	227079222	rs2236915	C	G	579.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=6.784;HaplotypeScore=10.8577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=2.159;SB=-2.830e+02;SOR=0.708;VQSLOD=6.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,21:38:99:608,0,560
1	227081622	rs10753428	A	G	821.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-2.800e+02;SOR=2.066;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:850,66,0
1	227081850	rs2855562	G	A	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.937;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-1.711;SB=-9.900e+01;SOR=0.538;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:272,0,251
1	227083550	rs8383	C	T	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=1.097;SB=0.00;SOR=1.270;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:241,0,113
1	227085155	rs11802358	G	A	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.100;SB=-3.677e+01;SOR=0.160;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:165,0,171
1	227085462	rs1800672	T	C	722.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.432;HaplotypeScore=1.5115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.865;SB=-4.350e+02;SOR=0.356;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,28:53:99:751,0,753
1	227172010	.	A	G	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.778;SB=-1.340e+02;SOR=0.243;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:308,0,248
1	227182033	rs2802269	G	A	1297.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-4.300e+02;SOR=1.662;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1326,99,0
1	227217005	rs3820651	C	T	812.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-4.076e+01;SOR=4.804;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:841,66,0
1	227218069	rs34444918	C	CAT	530.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-6.176e+01;SOR=3.258;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:568,30,0
1	227221222	rs11586734	C	G	1968.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-7.330e+02;SOR=1.888;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1997,144,0
1	227222515	rs66835709	G	GACAA	2413.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;RPA=1,2;RU=ACAA;SB=-7.610e+02;SOR=1.670;STR;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:47:99:2451,114,0
1	227223367	rs10495272	G	A	2552.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.97;SB=-2.960e+02;SOR=4.003;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2581,196,0
1	227239746	rs10799381	G	T	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-1.165e+02;SOR=3.690;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:867,66,0
1	227300277	rs488104	G	A	1023.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-4.700e+02;SOR=0.836;VQSLOD=4.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1052,81,0
1	227330759	rs12139502	A	G	1433.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-6.630e+02;SOR=1.329;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1462,108,0
1	227381326	rs6696485	C	T	97.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=-2.128;SB=0.00;SOR=0.330;VQSLOD=8.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:126,0,251
1	227381373	rs3768436	G	T	410.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.239;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-1.219;SB=-3.777e+01;SOR=0.197;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:439,0,491
1	227381442	rs11585910	A	G	978.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.775;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.918;SB=-3.430e+02;SOR=0.614;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,36:67:99:1007,0,829
1	227387361	rs3768434	A	G	269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-2.174;SB=-1.520e+02;SOR=0.627;VQSLOD=7.89;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,12:27:99:298,0,392
1	227452040	rs4375224	G	A	453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.36;SB=-2.760e+02;SOR=0.941;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:482,36,0
1	227504613	rs4653822	G	C	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=0.00;SOR=4.804;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:412,30,0
1	227504794	rs11804613	T	C	1235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-1.407;SB=-6.450e+02;SOR=0.616;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,50:99:99:1264,0,1273
1	227621935	rs12405551	G	C	351.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.06;SB=-2.061e+02;SOR=1.179;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:380,27,0
1	227695256	.	G	A	265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.051;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.42;MQ0=1;MQRankSum=0.000;QD=11.07;ReadPosRankSum=0.788;SB=-1.740e+02;SOR=0.765;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:24:99:294,0,253
1	227826788	rs68186506	C	T	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-1.065e+02;SOR=1.981;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:399,30,0
1	227834400	rs6426468	G	A	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.641;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.703;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.553;SB=-5.100e+01;SOR=1.179;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,13:33:99:398,0,582
1	227894232	rs80325207	C	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=1.104;SB=0.00;SOR=1.270;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:235,0,131
1	227920357	rs4837	C	T	1338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.800;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=5.597;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-1.020;SB=-8.170e+02;SOR=0.440;VQSLOD=7.08;culprit=DP	GT:AD:DP:GQ:PL	0/1:69,53:122:99:1367,0,1844
1	227920925	rs2273936	C	G	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=3.067;SB=0.00;SOR=0.859;VQSLOD=9.34;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:217,0,129
1	227922640	rs2273938	T	C	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.763;SB=-6.500e+01;SOR=1.022;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:206,0,224
1	227923081	rs7419238	G	A	1909.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-1.132e+03;SOR=0.724;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1938,144,0
1	227935280	rs2236361	C	T	2194.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-4.600e+02;SOR=2.869;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2223,166,0
1	227935355	rs2236360	T	C	3698.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-1.481e+03;SOR=1.371;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3727,280,0
1	227935762	rs2236358	G	A	963.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.004;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=0.525;SB=-4.570e+02;SOR=0.556;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,35:60:99:992,0,721
1	227954528	rs77046513	G	A	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.327;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=0.411;SB=-1.650e+02;SOR=0.281;VQSLOD=7.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,17:39:99:416,0,598
1	227954677	rs17851681	C	T	1047.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.709;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=5.793;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-1.035;SB=-5.580e+02;SOR=0.871;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,40:79:99:1076,0,1057
1	227954689	rs78405690	C	T	1020.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.228;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.383;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-1.397;SB=-5.900e+02;SOR=0.544;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,38:77:99:1049,0,1106
1	227967991	rs79016980	G	A	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=-2.512;SB=0.00;SOR=1.112;VQSLOD=9.44;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:300,0,177
1	227968033	rs9786978	T	C	1125.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-4.176e+01;SOR=5.421;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:87:1154,87,0
1	228003676	rs75865065	T	C	465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.225e+02;SOR=2.448;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:494,39,0
1	228033128	rs76957354	A	C	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=-0.167;SB=0.00;SOR=1.085;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:415,0,291
1	228033197	rs9426581	A	G	1448.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-7.250e+02;SOR=1.298;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1477,108,0
1	228033258	rs61741607	T	A	796.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.228;SB=-4.790e+02;SOR=0.582;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,32:64:99:825,0,837
1	228109137	rs35718701	A	G	943.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.465;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.998;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=0.213;SB=-5.680e+02;SOR=0.386;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,36:76:99:972,0,1032
1	228112121	rs4653889	A	G	420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.317;HaplotypeScore=4.5121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-0.496;SB=-1.140e+02;SOR=1.234;VQSLOD=7.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,16:46:99:449,0,834
1	228113046	rs8192629	C	T	457.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=6.024;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=0.185;SB=-1.740e+02;SOR=1.609;VQSLOD=6.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,19:51:99:486,0,896
1	228113163	rs3795768	A	G	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.206;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.049;SB=-2.010e+02;SOR=1.078;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:534,0,628
1	228129197	rs631768	T	C	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.58;ReadPosRankSum=1.308;SB=-1.180e+02;SOR=0.602;VQSLOD=8.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,10:29:99:248,0,507
1	228155249	rs72472996	C	A	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=51.96;MQ0=0;MQRankSum=-1.407;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=-0.344;SB=-8.500e+01;SOR=0.527;VQSLOD=3.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:156,0,222
1	228155300	rs184568518	C	T	121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.755;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.00;MQ0=2;MQRankSum=-1.548;POSITIVE_TRAIN_SITE;QD=6.76;ReadPosRankSum=0.109;SB=-5.100e+01;SOR=0.883;VQSLOD=2.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:150,0,259
1	228156074	rs370609364	C	T	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.775;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.72;MQ0=2;MQRankSum=-0.638;QD=6.38;ReadPosRankSum=-0.111;SB=-1.560e+02;SOR=0.593;VQSLOD=1.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,12:31:99:226,0,466
1	228194775	rs76933265	C	G	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.57;ReadPosRankSum=-0.734;SB=-2.203e+01;SOR=0.976;VQSLOD=7.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,6:24:99:138,0,489
1	228284991	rs2070960	C	T	1294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.289;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.320;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=-0.238;SB=-6.320e+02;SOR=0.419;VQSLOD=7.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,41:61:99:1323,0,538
1	228289976	rs2295995	A	G	881.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.482;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=-0.186;SB=-3.470e+02;SOR=0.672;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,29:47:99:910,0,464
1	228294300	rs12564763	T	C	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.411;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.104;SB=-3.100e+01;SOR=1.085;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:431,0,499
1	228327999	rs4653908	C	T	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.075;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.452;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=2.272;SB=-1.630e+02;SOR=1.473;VQSLOD=6.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,15:27:99:480,0,211
1	228333652	rs11577976	G	A	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.334;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-0.082;SB=-2.050e+02;SOR=0.807;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:472,0,641
1	228335125	rs1803695	C	T	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=0.620;SB=-9.900e+01;SOR=0.631;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:208,0,318
1	228335959	rs11580599	C	T	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.211;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.276;SB=-4.076e+01;SOR=0.197;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:483,0,459
1	228345744	rs148764840	G	A	447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.224;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.22;ReadPosRankSum=1.450;SB=-6.500e+01;SOR=0.859;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,16:26:99:476,0,294
1	228352160	rs4348717	T	C	2864.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-1.185e+03;SOR=1.609;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2893,223,0
1	228353651	rs55873785	G	C	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.433;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.182;SB=-1.090e+02;SOR=0.593;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:221,0,167
1	228362386	rs368007738	C	A	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.59;ReadPosRankSum=1.387;SB=-1.180e+02;SOR=0.541;VQSLOD=5.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,11:35:99:224,0,673
1	228391591	rs12022917	G	C	807.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.344;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=0.217;SB=-1.720e+02;SOR=1.188;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,26:48:99:836,0,622
1	228399482	rs11804508	C	G	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.845;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.047;SB=-3.200e+01;SOR=1.552;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:260,0,205
1	228399766	rs55971985	T	C	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.983;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.412;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=1.456;SB=-8.700e+01;SOR=1.531;VQSLOD=6.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,13:33:99:349,0,516
1	228399799	rs11582369	C	T	328.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.982;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-0.820;SB=-2.030e+02;SOR=0.209;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:357,0,253
1	228400646	rs3121192	T	C	228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=1.105;SB=-9.700e+01;SOR=0.807;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,9:25:99:257,0,430
1	228400653	rs3121191	A	T	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=1.905;SB=-9.700e+01;SOR=0.665;VQSLOD=8.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:196,0,357
1	228402047	rs1620111	A	G	667.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.658;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.101;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-0.811;SB=-3.030e+02;SOR=0.965;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,25:51:99:696,0,612
1	228402121	rs1771487	A	G	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.723;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.775;SB=-5.600e+01;SOR=1.112;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:403,0,493
1	228402508	rs2776853	C	T	1273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.376;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=0.533;SB=-2.490e+02;SOR=0.804;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,41:84:99:1302,0,1178
1	228404668	rs3795777	T	C	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=1.010;SB=-9.600e+01;SOR=0.593;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:217,0,171
1	228407010	rs1757158	C	T	432.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-1.607;SB=-2.650e+02;SOR=0.515;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:461,0,566
1	228407260	rs1771484	G	A	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=-1.073;SB=-9.700e+01;SOR=0.368;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:203,0,326
1	228407265	rs61560753	G	A	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=-1.115;SB=-1.020e+02;SOR=0.368;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:208,0,325
1	228412106	rs1771482	T	C	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.828;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.163;SB=-2.110e+02;SOR=0.569;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:501,0,531
1	228412227	rs1771480	T	C	685.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.762;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.550;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=-0.308;SB=-3.390e+02;SOR=0.805;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,23:46:99:714,0,643
1	228412228	rs1757153	G	A	657.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.511;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.550;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-0.341;SB=-3.170e+02;SOR=0.805;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,23:46:99:686,0,675
1	228412308	rs1757152	G	A	863.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=19.666;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-0.310;SB=-1.170e+02;SOR=3.090;VQSLOD=4.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,26:45:99:892,0,609
1	228430697	rs1771456	A	G	458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.504;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=1.404;SB=-6.900e+01;SOR=0.941;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:487,0,361
1	228431095	rs1771455	A	G	495.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.556;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=0.872;SB=-1.850e+02;SOR=1.301;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:524,0,297
1	228431235	rs11584385	G	A	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.688;SB=-3.000e+01;SOR=0.976;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:166,0,221
1	228431930	rs10916293	C	T	1695.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.771;SB=-9.280e+02;SOR=0.704;VQSLOD=8.54;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,69:140:99:1724,0,1941
1	228432987	rs1757129	G	C	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=-1.281;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=0.310;SB=-6.700e+01;SOR=0.437;VQSLOD=3.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,11:31:99:334,0,629
1	228433217	rs2487384	A	G	527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.369;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.912;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=2.339;SB=-2.200e+02;SOR=0.293;VQSLOD=6.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,20:46:99:556,0,811
1	228434395	rs7517088	T	C	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.071;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=-1.895;SB=-1.260e+02;SOR=1.179;VQSLOD=7.86;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,15:26:99:446,0,370
1	228434467	rs7517108	T	C	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.320;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=0.899;SB=-1.090e+02;SOR=0.525;VQSLOD=7.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,9:19:99:209,0,270
1	228437603	rs6426494	T	C	554.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.936;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.426;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.137;SB=-2.200e+02;SOR=1.167;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,23:55:99:583,0,897
1	228444318	rs7532144	T	G	301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.372;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=0.283;SB=-1.460e+02;SOR=0.399;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:86:330,0,86
1	228444563	rs372472787	G	A	395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.536;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.617;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.922;SB=-2.150e+02;SOR=0.239;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:424,0,355
1	228444565	rs7532342	T	A	815.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-3.030e+02;SOR=1.781;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:28:63:844,63,0
1	228444741	rs3795780	C	T	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.24;ReadPosRankSum=2.211;SB=-3.500e+01;SOR=0.473;VQSLOD=8.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,7:16:99:160,0,289
1	228447513	rs7525075	T	G	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.917;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-1.299;SB=-1.420e+02;SOR=0.418;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:431,0,323
1	228447519	rs7525078	T	A	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.799;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.931;SB=-1.370e+02;SOR=0.362;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:389,0,326
1	228455937	rs489926	T	C	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.449;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.102;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=-1.132;SB=-3.876e+01;SOR=0.082;VQSLOD=7.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:199,0,382
1	228456147	rs878388	T	C	977.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.847;HaplotypeScore=2.6665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.539;SB=-4.810e+02;SOR=0.883;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,38:84:99:1006,0,1081
1	228461129	rs1188724	A	G	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-0.308;SB=-9.000e+01;SOR=1.061;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:316,0,373
1	228461408	.	A	AG	963.73	PASS	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;RPA=3,4;RU=G;SB=-4.410e+02;SOR=0.941;STR;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:26:75:1001,75,0
1	228461757	rs474735	G	A	1108.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.141;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.277;SB=-3.320e+02;SOR=0.711;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,37:70:99:1137,0,887
1	228461833	rs374801427	G	A	827.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.998;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.62;ReadPosRankSum=-1.636;SB=-4.100e+02;SOR=0.734;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,29:53:99:856,0,726
1	228464146	.	C	G	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;DP=11;Dels=0.00;ExcessHet=3.0103;FS=12.175;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.80;ReadPosRankSum=-0.792;SB=-5.150e-01;SOR=3.903;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:191,0,99
1	228464248	rs1188721	T	G	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.500;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-0.077;SB=-1.730e+02;SOR=0.446;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:387,0,351
1	228464276	rs1188722	T	C	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.749;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=1.568;SB=-1.310e+02;SOR=0.892;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,12:30:99:347,0,486
1	228464842	rs936885	C	G	1190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.824;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-0.524;SB=-7.360e+02;SOR=0.701;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1219,0,1041
1	228465346	rs493945	A	G	1074.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.686;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=6.147;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-0.506;SB=-3.660e+02;SOR=1.484;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,38:79:99:1103,0,1183
1	228465370	rs867599	T	G	1207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.983;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.120;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-2.027;SB=-6.070e+02;SOR=1.048;VQSLOD=7.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1236,0,1082
1	228466750	rs3795782	T	C	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=1.457;SB=-1.420e+02;SOR=0.627;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,17:27:99:521,0,285
1	228466862	rs3820627	C	T	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.404;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.072;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=0.241;SB=-1.390e+02;SOR=0.132;VQSLOD=7.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,13:31:99:322,0,587
1	228468566	rs4653934	A	G	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=0.651;SB=0.00;SOR=1.445;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:281,0,129
1	228471379	rs56168609	G	C	1202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.099;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.812;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-2.213;SB=-5.540e+02;SOR=0.892;VQSLOD=7.17;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:46,49:95:99:1231,0,1356
1	228474817	rs4653935	G	A	228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=-1.335;SB=-1.175e+02;SOR=0.293;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:53:257,0,53
1	228480282	rs1150908	A	G	1133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.186;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.833;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.227;SB=-6.480e+02;SOR=0.824;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,43:81:99:1162,0,1022
1	228480286	.	G	C	1206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.410;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-0.039;SB=-6.670e+02;SOR=0.902;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,43:80:99:1235,0,1053
1	228480964	rs10158357	A	G	949.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.328;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=5.627;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=0.403;SB=-4.300e+02;SOR=0.221;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,32:65:99:978,0,913
1	228482028	rs4653547	G	C	1856.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.085;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=1.495;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=-1.181;SB=-9.160e+02;SOR=0.549;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,63:117:99:1885,0,1753
1	228482285	rs1150909	T	C	935.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.329;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.826;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-0.159;SB=-3.790e+02;SOR=0.341;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,32:61:99:964,0,892
1	228486404	rs56021350	C	T	941.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.954;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-0.565;SB=-4.440e+02;SOR=1.100;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,36:84:99:970,0,1211
1	228491633	rs11584418	G	A	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.411;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.121;SB=-2.370e+02;SOR=0.749;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,26:54:99:690,0,760
1	228494357	rs3795795	C	T	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-0.448;SB=-2.190e+02;SOR=0.779;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,23:50:99:593,0,664
1	228494382	rs1150911	T	C	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.395;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.842;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-0.151;SB=-2.440e+02;SOR=0.363;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:541,0,599
1	228494438	rs3795797	C	T	348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=0.116;SB=-9.900e+01;SOR=0.765;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:377,0,243
1	228494696	rs4653939	G	A	329.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=0.786;SB=-2.350e+02;SOR=0.626;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:358,0,410
1	228495696	rs419173	T	C	228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.826;SB=-3.101e+01;SOR=0.425;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:257,0,362
1	228496014	rs876180	G	A	878.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-1.105;SB=-3.990e+02;SOR=0.693;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,35:70:99:907,0,981
1	228497053	rs379620	A	G	1477.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.572;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=2.330;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-1.008;SB=-8.480e+02;SOR=0.622;VQSLOD=7.33;culprit=DP	GT:AD:DP:GQ:PL	0/1:68,54:122:99:1506,0,1863
1	228503677	rs1150912	A	G	789.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.230;SB=-4.250e+02;SOR=0.818;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:818,0,684
1	228504472	rs1188732	T	C	430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.339;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=6.606;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=0.348;SB=-9.400e+01;SOR=1.739;VQSLOD=6.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,16:47:99:459,0,834
1	228504591	rs61825301	C	A	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.166;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.181;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=-0.231;SB=-7.200e+01;SOR=1.813;VQSLOD=6.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,13:42:99:388,0,751
1	228504669	rs61825302	G	A	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.782;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.975;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.88;ReadPosRankSum=0.936;SB=-1.360e+02;SOR=0.197;VQSLOD=6.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:28:99:221,0,579
1	228504701	rs371837128	G	GCTCC	481.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DB;DP=21;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=-0.254;SB=-1.380e+02;SOR=0.293;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:519,0,781
1	228505204	rs4653942	G	A	469.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.151;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=0.000;SB=-2.650e+02;SOR=0.317;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,18:31:99:498,0,320
1	228505668	rs1188729	C	G	540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.973;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.63;ReadPosRankSum=0.859;SB=-2.110e+02;SOR=1.609;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,19:25:99:569,0,106
1	228505699	rs1188728	T	C	602.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=-0.300;SB=-3.160e+02;SOR=0.552;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,23:28:99:631,0,131
1	228505739	rs3795801	G	A	756.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.231;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=-0.375;SB=-4.620e+02;SOR=0.495;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,26:33:99:785,0,157
1	228509427	rs373610	A	G	1852.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.191;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.346;SB=-9.590e+02;SOR=0.709;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:73,61:134:99:1881,0,1936
1	228522483	rs11581192	C	T	444.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.992;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.519;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=1.120;SB=-1.360e+02;SOR=0.420;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:473,0,618
1	228523447	rs10799473	T	C	879.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.868;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.728;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.314;SB=-3.280e+02;SOR=0.382;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,33:52:99:908,0,540
1	228524642	rs56063628	T	C	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.825;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.580;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-0.469;SB=-4.700e+01;SOR=1.473;VQSLOD=7.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,12:34:99:336,0,590
1	228526011	rs11577699	C	T	844.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.170;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.985;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-0.814;SB=-4.720e+02;SOR=0.446;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,34:64:99:873,0,785
1	228547901	rs12035900	C	T	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.90;ReadPosRankSum=-1.217;SB=-1.790e+02;SOR=0.702;VQSLOD=8.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,13:43:99:368,0,881
1	228556788	rs3738685	C	T	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.329;HaplotypeScore=2.5279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=-0.504;SB=-1.200e+02;SOR=1.429;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:552,0,445
1	228559994	rs500049	C	T	730.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=8.604;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-0.404;SB=-2.900e+02;SOR=1.477;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,30:67:99:759,0,1062
1	228560139	rs498382	A	G	721.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.80;SB=-1.831e+02;SOR=2.093;VQSLOD=3.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:750,57,0
1	228560700	rs512253	T	C	1331.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.210;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.59;ReadPosRankSum=0.347;SB=-8.070e+02;SOR=0.223;VQSLOD=4.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,44:45:68:1360,68,0
1	228601638	rs472594	T	C	765.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-0.234;SB=-4.800e+02;SOR=0.760;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,29:49:99:794,0,530
1	228612838	rs2230656	G	T	1018.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-1.921e+02;SOR=2.833;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1047,81,0
1	228613052	rs1188474	T	C	1471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.30;SB=-9.250e+02;SOR=0.770;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1500,108,0
1	228645063	rs10916317	A	G	1322.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-4.800e+02;SOR=1.954;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:96:1351,96,0
1	228698311	rs115476782	C	A	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.935;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=1.438;SB=-2.070e+02;SOR=0.853;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,19:53:99:519,0,1031
1	228699477	rs6665115	T	C	1203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=1.518;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=0.528;SB=-5.070e+02;SOR=0.847;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:70,46:116:99:1232,0,2002
1	228786285	rs77648740	G	A	616.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.426;SB=-3.050e+02;SOR=0.760;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,24:47:99:645,0,673
1	229407233	rs7519709	G	C	297.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-4.276e+01;SOR=3.056;VQSLOD=4.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:326,27,0
1	229422193	rs237764	T	C	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-1.235;SB=-2.901e+01;SOR=2.147;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:22:99:286,0,270
1	229438828	rs237787	G	A	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.987;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=-0.440;SB=0.00;SOR=1.061;VQSLOD=10.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:361,0,228
1	229461024	rs2282083	C	T	1295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=3.592;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-2.242;SB=-7.550e+02;SOR=0.848;VQSLOD=7.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:51,54:105:99:1324,0,1312
1	229477725	.	G	GA	87.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.396;DP=28;ExcessHet=3.0103;FS=10.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.25;RPA=12,13;RU=A;ReadPosRankSum=-0.970;SB=-4.900e+01;SOR=0.038;STR;VQSLOD=4.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,7:28:99:125,0,357
1	229477767	rs12756927	A	G	729.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.403;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.235;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=0.410;SB=-2.240e+02;SOR=1.395;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:758,0,586
1	229602284	rs7555749	C	A	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=0.344;SB=0.00;SOR=0.836;VQSLOD=10.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:239,0,205
1	229622162	rs1065675	A	G	467.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.488;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.777;SB=-9.300e+01;SOR=1.625;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:496,0,518
1	229623131	rs6678721	G	C	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.607;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-1.427;SB=-1.765e+00;SOR=1.402;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:419,0,531
1	229623137	rs4925493	T	C	435.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.294;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-0.970;SB=-1.765e+00;SOR=1.329;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:464,0,578
1	229623338	rs1065674	T	C	644.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.454;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.545;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQ0=0;MQRankSum=1.275;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=0.318;SB=-1.520e+02;SOR=1.162;VQSLOD=0.222;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,25:62:99:673,0,1036
1	229623409	rs10666131	A	ATTTG	608.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;DB;DP=28;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=1.506;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.02;RPA=1,2;RU=TTTG;ReadPosRankSum=-1.618;SB=-1.050e+02;SOR=0.077;STR;VQSLOD=0.129;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,12:28:99:646,0,659
1	229631193	rs3818237	T	C	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=1.033;SB=-1.765e+00;SOR=1.371;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:170,0,212
1	229631734	rs11805194	T	C	754.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.886;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-1.369;SB=-3.850e+02;SOR=0.578;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,27:80:99:783,0,1419
1	229635521	rs10916495	A	G	619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.233;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-0.260;SB=-3.520e+02;SOR=0.497;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,24:49:99:648,0,643
1	229636388	rs6673421	A	G	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.263;SB=0.00;SOR=0.859;VQSLOD=10.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:209,0,160
1	229637645	rs754022	C	A	638.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.751;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-0.626;SB=-1.780e+02;SOR=0.223;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,24:45:99:667,0,639
1	229637881	rs2381108	T	G	951.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.800;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.138;SB=-3.530e+02;SOR=0.307;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,37:73:99:980,0,1075
1	229644157	rs2295624	G	T	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=-0.269;SB=-3.477e+01;SOR=0.061;VQSLOD=7.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:120,0,247
1	229663064	rs113712941	GAGGAA	G	3220.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.78;RPA=3,2;RU=AGGAA;SB=-1.213e+03;SOR=1.329;STR;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:52:99:3258,138,0
1	229683264	rs3738187	G	A	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.324;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=7.346;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=1.904;SB=-2.231e+02;SOR=0.066;VQSLOD=6.67;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,16:28:99:465,0,327
1	229730452	rs2295625	G	A	5378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=176;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-2.873e+03;SOR=1.001;VQSLOD=4.76;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,176:176:99:5407,397,0
1	229738170	rs3753886	T	G	3632.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-2.091e+03;SOR=0.903;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3661,277,0
1	229738236	rs4925500	G	A	4433.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-2.758e+03;SOR=0.707;VQSLOD=6.20;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4462,322,0
1	229745930	.	A	G	371.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.732;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.477;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.29;ReadPosRankSum=0.246;SB=-2.470e+02;SOR=0.790;VQSLOD=5.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,18:51:99:400,0,881
1	229746019	rs2273573	C	T	1135.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-3.540e+02;SOR=2.115;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1164,87,0
1	229750343	rs2273574	T	G	2932.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-1.138e+03;SOR=1.921;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2961,217,0
1	229768297	rs1473719	C	T	936.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;SB=-1.145e+02;SOR=3.690;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:965,72,0
1	229772693	rs3811473	T	G	3248.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-1.478e+03;SOR=1.265;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3277,241,0
1	229781532	rs881694	T	G	1390.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.89;SB=-4.276e+01;SOR=5.892;VQSLOD=3.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1419,108,0
1	229781744	rs2274994	T	C	4087.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6152;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-2.096e+03;SOR=1.033;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4116,298,0
1	229783236	rs6587349	T	C	1118.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.35;SB=-3.570e+02;SOR=1.765;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:84:1147,84,0
1	229783240	rs2274995	T	C	1227.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-3.210e+02;SOR=2.303;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:93:1256,93,0
1	229790048	rs7521953	A	G	4891.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-3.021e+03;SOR=0.954;VQSLOD=4.96;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,170:170:99:4920,352,0
1	229795070	rs1048306	T	G	1982.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-5.490e+02;SOR=2.221;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2011,153,0
1	229841139	rs7535031	C	T	549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-1.205e+02;SOR=2.584;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:578,42,0
1	230313911	rs678050	T	C	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.047;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-0.881;SB=-3.990e+02;SOR=0.641;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,28:54:99:636,0,744
1	230371883	rs3811488	G	A	973.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-4.140e+02;SOR=1.214;VQSLOD=7.20;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1002,75,0
1	230372025	rs3811487	A	G	620.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-0.510;SB=-2.830e+02;SOR=0.382;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,24:37:99:649,0,351
1	230372061	rs3811486	A	G	595.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.516;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-0.623;SB=-2.290e+02;SOR=0.836;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,22:53:99:624,0,802
1	230386341	rs2273966	T	A	962.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.168;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=0.046;SB=-4.370e+02;SOR=0.636;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,36:65:99:991,0,711
1	230391234	rs41315597	C	T	968.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.683;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.909;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-1.236;SB=-5.180e+02;SOR=0.486;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,36:75:99:997,0,1023
1	230398241	rs16851269	C	T	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=1.431;SB=-1.050e+02;SOR=0.293;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:277,0,279
1	230398445	rs3811485	G	A	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.526;HaplotypeScore=17.0848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.00;ReadPosRankSum=-0.769;SB=-2.530e+02;SOR=0.368;VQSLOD=7.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,18:52:99:436,0,939
1	230401241	rs3748011	G	T	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=0.131;SB=-4.076e+01;SOR=0.793;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:343,0,120
1	230451935	rs376956987	C	CAT	298.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.92;RPA=1,2;RU=AT;ReadPosRankSum=0.225;SB=-4.600e+01;SOR=1.179;STR;VQSLOD=10.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:336,0,381
1	230451978	rs11122492	G	A	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.101;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.010;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=-0.498;SB=-1.390e+02;SOR=0.207;VQSLOD=7.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,9:21:99:203,0,370
1	230461079	rs2306813	G	A	2619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.320;DB;DP=181;Dels=0.00;ExcessHet=3.0103;FS=1.163;HaplotypeScore=6.1747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-0.552;SB=-1.564e+03;SOR=0.748;VQSLOD=7.02;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,104:181:99:2648,0,1992
1	230497844	rs828478	C	G	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-1.063;SB=0.00;SOR=0.859;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:208,0,169
1	230497940	rs828479	G	T	558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.058;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-1.870;SB=-1.080e+02;SOR=0.446;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,19:37:99:587,0,541
1	230498232	rs2820384	C	T	463.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.256;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.323;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-1.481;SB=-4.276e+01;SOR=0.077;VQSLOD=7.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,17:46:99:492,0,1051
1	230503684	rs2632571	C	T	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.024;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-0.869;SB=-2.120e+02;SOR=0.283;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,20:37:99:534,0,493
1	230513128	rs828463	G	A	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.035;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.490;SB=-1.450e+02;SOR=0.116;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:277,0,247
1	230778243	rs11361885	AC	A	592.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.87;RPA=6,5;RU=C;SB=-1.543e+02;SOR=2.179;STR;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:18:51:630,51,0
1	230778491	rs4846864	G	C	721.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=-3.150e+02;SOR=1.519;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:750,57,0
1	230795177	rs1359866	T	C	1178.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-2.800e+02;SOR=2.649;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1207,90,0
1	230796375	rs3736982	A	C	1973.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.34;ReadPosRankSum=-1.635;SB=-4.376e+01;SOR=5.136;VQSLOD=3.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,52:53:99:2002,150,0
1	230819479	.	G	GT	915.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.376;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQ0=0;MQRankSum=0.505;POSITIVE_TRAIN_SITE;QD=21.80;RPA=12,13;RU=T;ReadPosRankSum=-0.945;SB=-1.820e+02;SOR=1.179;STR;VQSLOD=3.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,39:49:50:908,50,0
1	230820763	rs3831130	C	CACATT	2360.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;DB;DP=84;ExcessHet=3.0103;FS=5.532;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=-0.830;POSITIVE_TRAIN_SITE;QD=17.07;RPA=1,2;RU=ACATT;ReadPosRankSum=1.139;SB=-3.500e+02;SOR=1.458;STR;VQSLOD=0.413;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,35:84:99:2398,0,3367
1	230820780	rs3215851	TA	T	1794.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;DB;DP=112;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=0.891;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.17;RPA=4,3;RU=A;ReadPosRankSum=-0.929;SB=-5.470e+02;SOR=0.544;STR;VQSLOD=0.030;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,63:112:99:1832,0,1371
1	230825942	rs3000064	A	G	190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=1.876;SB=-8.097e+01;SOR=0.197;VQSLOD=7.13;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:219,0,133
1	230828987	rs2478534	C	A	513.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.200;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-0.463;SB=-2.302e+01;SOR=1.708;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:542,0,535
1	230841687	rs7080	T	C	3691.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-1.422e+03;SOR=1.739;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3720,271,0
1	230845794	rs699	A	G	1683.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.269;SB=-9.250e+02;SOR=0.793;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:65,64:129:99:1712,0,1542
1	230883506	rs28359583	G	T	742.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.026;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.694;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=0.882;SB=-1.210e+02;SOR=1.179;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,27:67:99:771,0,1208
1	230895279	rs12562749	C	T	1056.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.424;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.852;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=0.472;SB=-5.680e+02;SOR=0.528;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,39:80:99:1085,0,1120
1	230898231	rs2282318	T	A	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=0.817;SB=-9.732e-01;SOR=1.508;VQSLOD=8.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:124,0,246
1	230898397	rs28359631	A	G	914.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.101;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.944;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-1.135;SB=-4.320e+02;SOR=0.924;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,35:68:99:943,0,819
1	230898494	rs2282319	C	T	1141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=-0.267;SB=-7.520e+02;SOR=0.712;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,46:75:99:1170,0,713
1	230898615	.	G	GA	277.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DP=25;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.08;RPA=6,7;RU=A;ReadPosRankSum=0.062;SB=-2.302e+01;SOR=1.445;STR;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:25:99:315,0,259
1	230903234	rs11122590	A	G	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.972;SB=-3.100e+01;SOR=1.314;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:320,0,300
1	230903350	rs3828126	T	C	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862;DB;DP=38;Dels=0.03;ExcessHet=3.0103;FS=7.718;HaplotypeScore=1.9662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=1.034;SB=-1.690e+02;SOR=0.628;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,14:37:99:402,0,646
1	230903495	rs3828127	G	A	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.198;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=0.918;SB=-2.270e+02;SOR=0.469;VQSLOD=7.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,19:48:99:482,0,764
1	230914729	rs1933631	A	C	1487.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.919;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=8.703;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=0.801;SB=-6.340e+02;SOR=1.528;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,55:92:99:1516,0,1002
1	230923151	rs2297830	T	C	292.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=1.056;SB=0.00;SOR=1.609;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:321,0,126
1	230923187	rs12731671	C	G	368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=1.703;SB=-1.070e+02;SOR=0.693;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:24:99:397,0,274
1	230923313	rs12731961	C	T	597.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.288;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-0.420;SB=-2.470e+02;SOR=1.426;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,23:45:99:626,0,547
1	230927353	rs6671302	T	A	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.839;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-0.099;SB=0.00;SOR=0.540;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:311,0,405
1	230927871	rs1933635	T	C	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-1.186;SB=-9.800e+01;SOR=0.551;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:209,0,170
1	230928512	rs7522057	C	G	1034.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.269;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.928;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.457;SB=-4.070e+02;SOR=0.509;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,41:85:99:1063,0,1246
1	230975454	rs1202550	A	G	379.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=0.00;SOR=4.804;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:408,30,0
1	231042732	rs3811502	T	A	1093.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-5.360e+02;SOR=1.209;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1122,81,0
1	231047310	rs10580953	TAC	T	818.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.55;SB=-1.615e+02;SOR=2.584;VQSLOD=3.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:18:48:856,48,0
1	231052183	rs7537655	G	T	388.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=0.00;SOR=4.977;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:417,33,0
1	231057310	rs2275334	C	T	316.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-4.176e+01;SOR=3.258;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:345,27,0
1	231059784	rs3748774	C	T	569.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.30;SB=0.00;SOR=5.670;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:598,48,0
1	231060736	rs3748775	T	C	2099.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.488;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5210;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.34;ReadPosRankSum=-1.124;SB=-8.940e+02;SOR=1.437;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,65:67:99:2128,118,0
1	231064578	rs33960733	T	TCTC	655.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.78;SB=-6.776e+01;SOR=3.442;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:12:33:693,33,0
1	231064611	rs950029	G	A	658.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-8.097e+01;SOR=3.611;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:687,51,0
1	231067236	rs11122624	C	T	1392.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-5.360e+02;SOR=1.508;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1421,108,0
1	231067318	rs11122625	G	T	629.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-8.097e+01;SOR=3.716;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:658,54,0
1	231069652	rs1890351	A	C	1030.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-4.276e+01;SOR=5.136;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1059,78,0
1	231079381	rs6541239	A	G	382.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=0.00;SOR=4.804;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:411,30,0
1	231081269	.	T	TA	397.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.57;RPA=3,4;RU=A;ReadPosRankSum=0.527;SB=-6.301e+01;SOR=0.560;STR;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:26:99:435,0,272
1	231081304	rs6673085	T	G	716.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.15;SB=-3.976e+01;SOR=4.514;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:745,54,0
1	231093785	rs59207624	CT	C	936.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.02;RPA=10,9;RU=T;SB=-1.361e+02;SOR=3.383;STR;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:39:99:974,108,0
1	231124055	rs10779804	T	C	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.846;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.526;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-0.586;SB=-2.080e+02;SOR=0.245;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:480,0,456
1	231157500	rs78166309	C	T	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.161;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=1.237;SB=-2.630e+02;SOR=0.586;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:483,0,536
1	231157721	rs4311872	T	C	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.572;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.545;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=-0.812;SB=-2.591e+02;SOR=0.160;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,16:22:99:419,0,151
1	231320720	rs41304012	A	T	1186.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-3.460e+02;SOR=2.242;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1215,87,0
1	231321943	rs12070228	C	A	2268.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-1.320e+03;SOR=0.828;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2297,169,0
1	231322043	rs12096847	A	G	1468.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-4.490e+02;SOR=2.303;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1497,108,0
1	231336946	rs57632781	G	A	1444.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-5.720e+02;SOR=1.863;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1473,108,0
1	231339713	rs11806609	C	T	1386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-8.760e+02;SOR=0.823;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1415,102,0
1	231344589	rs75728373	C	T	509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.165e+02;SOR=2.584;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:538,39,0
1	231353462	rs6691392	A	G	1556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-4.350e+02;SOR=2.494;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1585,123,0
1	231377081	rs518686	C	T	574.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.927;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=-1.451;SB=-2.750e+02;SOR=0.704;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,20:35:99:603,0,415
1	231396116	rs34912601	T	TTA	363.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.07;ReadPosRankSum=-0.381;SB=0.00;SOR=1.802;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:99:401,0,128
1	231401596	rs532226	T	C	726.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-2.490;SB=-1.610e+02;SOR=0.720;VQSLOD=8.44;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,26:56:99:755,0,844
1	231401902	rs574553	G	A	1739.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.633;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=1.529;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-0.992;SB=-8.180e+02;SOR=0.511;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,66:123:99:1768,0,1560
1	231406295	rs3767758	T	C	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-0.349;SB=-1.765e+00;SOR=1.609;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:169,0,169
1	231480507	rs1009227	A	G	232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=-0.165;SB=-1.100e+02;SOR=0.446;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:92:261,0,92
1	231486989	rs2474633	A	C	283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=31.9140;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=0.708;POSITIVE_TRAIN_SITE;QD=5.79;ReadPosRankSum=-0.033;SB=-5.200e+01;SOR=1.230;VQSLOD=2.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,15:49:99:312,0,1005
1	231488524	rs2437150	C	T	998.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=5.908;HaplotypeScore=4.2599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.811;SB=-5.640e+02;SOR=0.662;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,38:77:99:1027,0,1152
1	231502245	rs1435167	T	A	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.281;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=1.275;SB=-3.010e+02;SOR=0.615;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:470,0,354
1	231502310	rs1435166	T	C	371.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.175;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-0.949;SB=-1.350e+02;SOR=0.242;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,16:26:99:400,0,328
1	231506557	rs2256908	G	A	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.716;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.552;SB=-7.001e+01;SOR=0.105;VQSLOD=7.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,10:29:99:281,0,598
1	231699398	rs11313472	AT	A	98.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.59;RPA=20,19;RU=T;ReadPosRankSum=2.037;SB=0.00;SOR=2.147;STR;VQSLOD=6.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,10:20:38:136,0,38
1	231727447	rs1655305	A	G	2355.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-1.133e+03;SOR=1.165;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2384,175,0
1	231747989	rs7548847	G	A	469.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-3.577e+01;SOR=3.912;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:498,39,0
1	231903010	rs3738402	C	T	1565.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.637;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=2.376;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=2.727;SB=-3.980e+02;SOR=0.369;VQSLOD=7.07;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:33,53:86:99:1594,0,1013
1	231906847	rs16854940	C	T	767.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.024;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.411;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=0.171;SB=-2.500e+02;SOR=0.462;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,29:46:99:796,0,458
1	231936016	rs2759354	A	G	1345.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-4.070e+02;SOR=2.038;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1374,99,0
1	231954427	rs1535530	C	T	521.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=0.00;SOR=5.549;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:550,42,0
1	231954872	rs11588937	C	T	2025.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;SB=-7.520e+02;SOR=1.493;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:59:99:2054,154,0
1	231956086	rs11122343	A	T	1184.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-6.270e+02;SOR=1.040;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1213,90,0
1	232002392	rs3082	A	G	397.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=0.291;SB=-1.090e+02;SOR=0.871;VQSLOD=10.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:426,0,220
1	232144871	rs11122391	A	G	2622.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-8.220e+02;SOR=2.185;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2651,193,0
1	232535030	rs629939	C	T	3485.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-1.531e+03;SOR=1.449;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3514,265,0
1	232568293	rs1547741	A	G	1494.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-4.330e+02;SOR=2.059;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1523,111,0
1	232577281	rs573140	T	G	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.944;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=12.750;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-1.278;SB=-1.060e+02;SOR=1.220;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:398,0,542
1	232650750	rs3795366	A	G	7526.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=239;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.49;SB=-4.491e+03;SOR=0.807;VQSLOD=2.95;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,239:239:99:7555,575,0
1	232650867	rs4649383	C	T	7085.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=228;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.21;SB=-3.948e+03;SOR=0.794;VQSLOD=3.36;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,227:228:99:7114,527,0
1	232941153	rs12409898	C	T	396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.261;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=10.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-1.270;SB=-2.191e+02;SOR=0.055;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:425,0,383
1	232941354	rs12567597	G	T	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.412;SB=-9.900e+01;SOR=0.735;VQSLOD=10.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,7:16:99:170,0,288
1	233137225	rs140788891	CATAA	C	1655.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;RPA=11,10;RU=ATAA;SB=-1.100e+02;SOR=4.680;STR;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:35:96:1693,96,0
1	233296399	rs66823859	A	AG	863.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-1.445e+02;SOR=2.948;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:901,57,0
1	233296891	rs2296515	T	C	2668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-1.401e+03;SOR=1.105;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2697,196,0
1	233296908	rs2296516	T	G	2670.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-1.536e+03;SOR=0.922;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2699,196,0
1	233362930	rs701176	G	A	1141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.002;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.055;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-0.758;SB=-6.560e+02;SOR=0.797;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,43:79:99:1170,0,1016
1	233372917	rs12141456	T	G	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=0.938;SB=0.00;SOR=0.368;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:161,0,281
1	233397752	rs6701073	T	C	1020.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.004;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-1.555;SB=-3.580e+02;SOR=0.739;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,38:78:99:1049,0,1118
1	233398636	rs12120677	A	G	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.244;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=0.619;SB=0.00;SOR=0.582;VQSLOD=9.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:233,0,246
1	233398670	rs12132556	C	A	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=1.298;SB=-1.765e+00;SOR=1.270;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:365,0,487
1	233398713	rs1033325	C	T	675.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.992;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.087;SB=-1.360e+02;SOR=0.473;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,24:54:99:704,0,950
1	233398927	rs1033324	C	G	575.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-2.174;SB=-9.700e+01;SOR=0.923;VQSLOD=7.27;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,21:53:99:604,0,1060
1	233398931	rs66531712	G	GC	819.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-1.864;SB=-1.290e+02;SOR=0.880;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,21:54:99:857,0,1353
1	233398993	rs1033323	C	A	80.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.916;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.05;ReadPosRankSum=0.283;SB=0.00;SOR=0.223;VQSLOD=9.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:109,0,402
1	233512362	rs10489691	A	G	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.397;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=-0.825;SB=-1.740e+02;SOR=0.741;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,21:54:99:545,0,844
1	233514934	rs3795375	G	A	1298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.771;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=3.013;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-0.324;SB=-6.070e+02;SOR=0.406;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,47:87:99:1327,0,1252
1	233514975	rs3795374	G	T	1220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.756;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=2.905;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=1.064;SB=-5.340e+02;SOR=1.059;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,43:85:99:1249,0,1334
1	233515071	rs963982	C	T	1219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.507;SB=-7.210e+02;SOR=0.618;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1248,0,1061
1	233515102	rs963981	T	G	1298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.213;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.551;SB=-6.340e+02;SOR=0.845;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,51:92:99:1327,0,1146
1	233515413	rs1402815	G	A	1142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.768;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.312;SB=-6.220e+02;SOR=0.858;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,44:97:99:1171,0,1433
1	233759918	rs701213	T	C	872.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.773;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.513;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=-1.005;SB=-3.790e+02;SOR=0.345;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,32:57:99:901,0,729
1	233767008	rs701224	T	A	1141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.587;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-0.013;SB=-7.320e+02;SOR=0.528;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,47:102:99:1170,0,1396
1	233767023	rs701225	A	G	916.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.288;SB=-5.350e+02;SOR=0.756;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,37:86:99:945,0,1316
1	233767059	rs701226	T	C	761.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.994;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-1.402;SB=-3.620e+02;SOR=1.013;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,33:72:99:790,0,1125
1	233785716	rs17814096	T	G	1407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.136;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=1.853;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=-0.903;SB=-7.590e+02;SOR=0.438;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,49:84:99:1436,0,891
1	233785786	rs4649241	A	C	750.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.515;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.967;HaplotypeScore=1.7313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=-0.356;SB=-2.280e+02;SOR=0.836;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,33:79:99:779,0,1279
1	234040898	rs78485515	G	A	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=0.711;SB=-1.270e+02;SOR=0.892;VQSLOD=8.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,9:21:99:203,0,265
1	234041422	rs57010808	G	C	3673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-1.870e+03;SOR=1.010;VQSLOD=5.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,121:123:99:3702,277,0
1	234041667	rs111395268	G	A	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.590;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=0.733;POSITIVE_TRAIN_SITE;QD=24.99;ReadPosRankSum=0.858;SB=0.00;SOR=1.802;VQSLOD=3.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,17:24:99:628,0,206
1	234367549	rs2236220	T	C	3233.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-9.450e+02;SOR=2.442;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3263,253,0
1	234442257	rs877722	A	T	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.795;SB=-1.730e+02;SOR=0.446;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:337,0,439
1	234442376	rs674385	G	A	363.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.226;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.748;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-0.388;SB=-1.760e+02;SOR=0.387;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:392,0,241
1	234444761	rs11359233	TA	T	610.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.959;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;MQRankSum=0.530;POSITIVE_TRAIN_SITE;QD=18.51;RPA=13,12;RU=A;ReadPosRankSum=-1.223;SB=-2.777e+01;SOR=2.712;STR;VQSLOD=1.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,30:36:33:648,33,0
1	234454405	rs657010	A	C	583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-8.097e+01;SOR=3.383;VQSLOD=6.52;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:45:612,45,0
1	234458668	rs35870005	G	A	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=1.974;SB=-7.000e+01;SOR=1.179;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:387,0,232
1	234509259	rs10910420	G	C	513.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.202;HaplotypeScore=1.4725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-0.689;SB=-1.950e+02;SOR=0.999;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:542,0,735
1	234509858	rs61077059	GT	G	67.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;DB;DP=10;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;RPA=17,16;RU=T;ReadPosRankSum=-2.100;SB=-2.044e+00;SOR=3.126;STR;VQSLOD=5.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,6:10:17:105,0,17
1	234510262	rs4300255	A	G	597.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.501;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.382;SB=-3.220e+02;SOR=0.760;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,24:42:99:626,0,543
1	234519452	.	C	CT	212.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DP=25;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;RPA=9,10;RU=T;ReadPosRankSum=0.980;SB=-3.177e+01;SOR=0.169;STR;VQSLOD=7.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,12:25:99:250,0,273
1	234527575	rs3862040	C	T	272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.699;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=0.734;SB=-1.765e+00;SOR=2.387;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:301,0,206
1	234529552	rs2175594	C	T	965.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.233;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=4.970;HaplotypeScore=2.8105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.818;SB=-2.700e+02;SOR=1.387;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,34:72:99:994,0,955
1	234529570	rs2175593	G	A	749.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.356;HaplotypeScore=3.3637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=1.584;SB=-2.180e+02;SOR=1.268;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,27:62:99:778,0,901
1	234541622	rs2271444	G	T	319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.798;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=-0.085;SB=-1.135e+02;SOR=0.093;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:348,0,219
1	234556630	rs6661926	C	T	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.469;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=4.430;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.66;ReadPosRankSum=0.295;SB=-1.820e+02;SOR=0.103;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,20:33:99:611,0,428
1	234556646	rs6669819	T	A	568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.039;HaplotypeScore=2.4385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=-0.053;SB=-1.340e+02;SOR=0.174;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,21:34:99:597,0,412
1	234563060	rs443685	T	C	3114.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-2.089e+03;SOR=0.770;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3143,223,0
1	234565164	.	T	C	1017.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.761;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.295;SB=-4.140e+02;SOR=0.650;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,41:99:99:1046,0,1594
1	234601225	rs3736837	C	T	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.062;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-0.228;SB=-3.100e+01;SOR=0.818;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:192,0,283
1	234601456	.	T	TA	310.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQ0=0;MQRankSum=1.754;QD=6.61;RPA=19,20;RU=A;ReadPosRankSum=-0.201;SB=-1.560e+02;SOR=0.602;STR;VQSLOD=0.512;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,22:59:99:348,0,299
1	234601529	rs3736838	T	C	717.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.420;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.3652;MLEAC=1;MLEAF=0.500;MQ=60.81;MQ0=0;MQRankSum=0.215;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.778;SB=-2.400e+02;SOR=0.816;VQSLOD=3.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,24:53:99:746,0,735
1	234603075	rs270503	G	T	443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=0.00;SOR=5.136;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:472,36,0
1	234603205	rs16843273	C	T	256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=-0.290;SB=-1.720e+02;SOR=0.836;VQSLOD=8.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,13:35:99:285,0,588
1	234603322	rs60079444	A	T	433.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.453;SB=-2.910e+02;SOR=0.675;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:462,0,448
1	234606644	rs10910441	A	G	685.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-2.361e+02;SOR=1.931;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:714,51,0
1	234606653	rs12042313	C	T	766.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-2.390e+02;SOR=1.893;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:795,60,0
1	234606998	rs3754307	A	G	542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-3.550e+02;SOR=0.793;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:571,42,0
1	234744250	rs8722	G	A	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=0.821;SB=-1.700e+02;SOR=0.502;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:32:99:367,0,501
1	234744413	rs4636	C	A	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=1.313;SB=-8.097e+01;SOR=0.082;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:249,0,214
1	235285740	rs4659823	C	T	670.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.13;SB=-5.540e+02;SOR=0.760;VQSLOD=3.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:48:699,48,0
1	235338377	rs12731779	G	A	644.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;SB=-4.076e+01;SOR=4.407;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:673,51,0
1	235357303	rs66714638	A	ATG	2236.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.14;SB=-1.983e+02;SOR=3.967;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:2274,117,0
1	235357314	rs35180803	AT	A	1945.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.95;RPA=2,1;RU=T;SB=-2.671e+02;SOR=3.467;STR;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1983,132,0
1	235357543	rs10802438	A	G	1753.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-3.740e+02;SOR=2.604;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1782,132,0
1	235383188	rs4659654	A	G	914.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.14;SB=-4.940e+02;SOR=1.148;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:66:943,66,0
1	235392546	rs12731746	T	C	639.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.11;SB=-4.276e+01;SOR=4.407;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:668,51,0
1	235394278	rs12753166	G	T	769.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=0.00;SOR=6.184;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:798,63,0
1	235394541	rs7518225	A	C	1457.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-3.020e+02;SOR=2.885;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1486,111,0
1	235397937	rs35818300	GCA	G	361.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;RPA=6,5;RU=CA;SB=-4.676e+01;SOR=3.056;STR;VQSLOD=6.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:14:27:399,27,0
1	235490391	rs3840452	CA	C	1488.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;RPA=2,1;RU=A;SB=-8.897e+01;SOR=4.921;STR;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:37:99:1526,108,0
1	235505313	.	A	AT	807.73	PASS	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;RPA=7,8;RU=T;SB=-1.861e+02;SOR=2.387;STR;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:29:81:845,81,0
1	235543262	.	C	CA	83.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.37;RPA=17,18;RU=A;ReadPosRankSum=0.561;SB=0.00;SOR=1.609;STR;VQSLOD=9.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,7:11:26:121,0,26
1	235594182	rs2291687	A	G	354.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=1.171;SB=-2.040e+02;SOR=0.481;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,16:23:99:383,0,167
1	235597252	rs12405889	T	G	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.054;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=0.254;SB=-1.390e+02;SOR=0.892;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:504,0,339
1	235598973	rs2055127	C	T	485.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.493;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=-0.030;SB=-1.390e+02;SOR=1.911;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,18:25:99:514,0,213
1	235601958	rs3819974	G	T	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=7.048;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=1.584;SB=-1.750e+02;SOR=0.105;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:359,0,336
1	235611535	.	CA	C	142.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;DP=26;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.49;RPA=20,19;RU=A;ReadPosRankSum=0.873;SB=-2.578e+01;SOR=0.195;STR;VQSLOD=5.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,13:26:99:180,0,177
1	235612320	rs704705	C	T	2019.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.82;SB=-2.560e+02;SOR=3.767;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2048,154,0
1	235628908	rs1305556	G	A	480.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-1.145e+02;SOR=2.584;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:509,39,0
1	235647631	rs291387	G	T	1704.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-2.251e+02;SOR=3.745;VQSLOD=6.47;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1733,135,0
1	235652513	rs291396	T	C	2379.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-1.057e+03;SOR=1.519;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2408,178,0
1	235652775	rs11299116	CT	C	440.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.49;RPA=3,2;RU=T;SB=0.00;SOR=5.136;STR;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:36:478,36,0
1	235659621	.	G	GA	311.73	PASS	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;QD=23.98;RPA=14,15;RU=A;SB=-1.551e+02;SOR=0.836;STR;VQSLOD=2.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:14:39:349,39,0
1	235667690	rs291348	A	G	375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=-4.176e+01;SOR=3.442;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:404,30,0
1	235715523	rs14326	A	G	2312.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-1.014e+03;SOR=1.409;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2341,172,0
1	235715556	rs423026	C	G	1877.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=-4.010e+02;SOR=2.876;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1906,138,0
1	235715601	rs400948	A	G	989.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-7.997e+01;SOR=4.332;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:1018,78,0
1	235715617	rs452950	A	C	589.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=0.00;SOR=5.784;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:618,51,0
1	235715661	rs387492	A	G	369.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=0.00;SOR=4.804;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:398,30,0
1	235747005	rs2774335	C	T	126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.133;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.76;ReadPosRankSum=0.317;SB=-5.500e+01;SOR=0.321;VQSLOD=9.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:22:99:155,0,480
1	235747154	rs2774336	A	G	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.68;ReadPosRankSum=-0.120;SB=-1.140e+02;SOR=0.681;VQSLOD=7.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,9:38:99:168,0,857
1	235887276	rs6667717	G	T	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.338;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-0.704;SB=-3.001e+01;SOR=0.770;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:444,0,414
1	235896726	rs6429275	C	T	778.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.821;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.611;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=-0.580;SB=-6.500e+01;SOR=1.942;VQSLOD=6.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,23:37:99:807,0,309
1	235909485	rs10926565	T	C	372.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=0.792;SB=0.00;SOR=0.874;VQSLOD=10.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:401,0,320
1	235910392	rs6676149	A	G	1171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.648;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.171;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=-0.736;SB=-3.270e+02;SOR=0.464;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,40:69:99:1200,0,861
1	235910542	rs3754234	C	T	1360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.943;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=2.889;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-1.464;SB=-4.750e+02;SOR=1.119;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,47:94:99:1389,0,1323
1	235918688	rs149138177	CAAAAG	C	298.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;RPA=8,7;RU=AAAAG;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;STR;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:13:99:336,0,268
1	235922228	rs3738519	T	C	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.736;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.635;SB=-6.700e+01;SOR=1.022;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:339,0,416
1	235926240	.	T	C	590.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.338;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.844;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.69;ReadPosRankSum=-0.603;SB=-6.897e+01;SOR=0.223;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,19:30:99:619,0,354
1	235940450	rs2273584	C	T	1886.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.992;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.548;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-0.244;SB=-8.270e+02;SOR=0.531;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,71:125:99:1915,0,1629
1	235945294	rs6696123	T	C	1209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.603;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.777;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.979;SB=-7.030e+02;SOR=0.637;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,43:94:99:1238,0,1340
1	235972435	rs3820553	T	C	1369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.252;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=0.157;SB=-7.570e+02;SOR=0.691;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,48:83:99:1398,0,822
1	235972867	rs1063128	T	C	970.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.331;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-0.910;SB=-5.040e+02;SOR=0.595;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,36:61:99:999,0,637
1	236141174	rs3213190	T	C	2694.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-1.316e+03;SOR=1.191;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2723,202,0
1	236142253	rs12032474	T	G	1520.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-5.510e+02;SOR=1.814;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1549,111,0
1	236142318	rs368177638	G	A	1306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.54;ReadPosRankSum=1.339;SB=-5.440e+02;SOR=1.166;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,47:79:99:1335,0,779
1	236142565	rs1536132	T	C	1108.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-2.840e+02;SOR=2.517;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1137,84,0
1	236142570	rs3738524	C	G	1120.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.20;SB=-2.281e+02;SOR=2.765;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1149,84,0
1	236143302	.	C	CA	1174.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.453;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.32;RPA=8,9;RU=A;ReadPosRankSum=-0.443;SB=-4.530e+02;SOR=0.569;STR;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,42:50:99:1212,101,0
1	236144754	rs3820558	C	A	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=0.00;SOR=4.804;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
1	236144951	rs3738525	A	G	3017.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.523e+03;SOR=1.145;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3046,220,0
1	236145145	rs715956	T	C	1970.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=-4.120e+02;SOR=2.958;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1999,147,0
1	236154057	rs139359390	AGGACTACAT	A	4735.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-3.615e+02;SOR=4.514;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:4773,120,0
1	236154365	rs4660137	G	T	1013.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.28;SB=-7.597e+01;SOR=4.407;VQSLOD=3.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1042,78,0
1	236157277	rs16833075	T	G	2677.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6002;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-6.950e+02;SOR=2.448;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2706,199,0
1	236175153	rs2031486	T	C	322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.350;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=-0.089;SB=0.00;SOR=0.914;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:351,0,260
1	236175339	rs2031487	T	C	1035.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=4.003;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-0.918;SB=-5.160e+02;SOR=1.151;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,40:90:99:1064,0,1212
1	236176990	rs10803217	T	C	577.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.747;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.772;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-0.243;SB=-1.350e+02;SOR=1.609;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:606,0,290
1	236193145	rs2273586	G	C	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.67;ReadPosRankSum=0.568;SB=-1.600e+02;SOR=0.515;VQSLOD=8.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,12:31:99:297,0,572
1	236201609	rs4659620	T	G	608.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.988;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=5.666;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=1.465;SB=-5.300e+01;SOR=1.853;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,21:51:99:637,0,808
1	236208688	rs10733131	A	G	274.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.483;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.735;SB=-1.765e+00;SOR=1.214;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:303,0,443
1	236208689	rs10733132	T	A	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.698;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=0.635;SB=-1.765e+00;SOR=1.214;VQSLOD=9.37;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,9:22:99:273,0,444
1	236208773	rs10733133	C	T	692.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.598;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.194;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-0.660;SB=-8.700e+01;SOR=0.986;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,25:60:99:721,0,1041
1	236209024	rs3768088	C	G	483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.556;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.333;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=-0.045;SB=-1.620e+02;SOR=0.432;VQSLOD=7.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,21:53:99:512,0,962
1	236209081	rs3768089	G	A	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.295;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.380;SB=-1.765e+00;SOR=1.460;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:302,0,356
1	236273694	rs4659623	G	A	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=-1.097;SB=-1.450e+02;SOR=0.892;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:51:262,0,51
1	236275380	rs10924217	A	G	72.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.62;ReadPosRankSum=0.542;SB=-2.801e+01;SOR=0.693;VQSLOD=8.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:101,0,189
1	236305885	rs7522547	G	A	353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.054;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=-0.227;SB=0.00;SOR=1.609;VQSLOD=10.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,11:16:99:382,0,137
1	236368391	.	C	CT	835.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;DP=55;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;RPA=1,2;RU=T;ReadPosRankSum=1.135;SB=-1.830e+02;SOR=1.008;STR;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,23:55:99:873,0,1247
1	236368708	rs1254206	T	C	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.831;SB=0.00;SOR=0.551;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:173,0,201
1	236399442	rs1254194	G	T	692.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=0.00;SOR=5.994;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:721,57,0
1	236413230	rs2477599	T	A	646.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SB=-4.330e+02;SOR=0.941;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:48:675,48,0
1	236433135	rs3834089	AT	A	1163.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-3.680e+02;SOR=1.781;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1201,81,0
1	236557771	rs966365	G	A	3907.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.01;SB=-2.250e+03;SOR=0.791;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3936,289,0
1	236557928	rs966364	G	A	1253.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-8.097e+01;SOR=4.863;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:96:1282,96,0
1	236572475	rs669710	A	G	481.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.306;HaplotypeScore=3.6292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=-0.587;SB=-3.100e+02;SOR=0.412;VQSLOD=7.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,22:57:99:510,0,888
1	236577761	rs625444	T	C	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-1.213;SB=0.00;SOR=0.223;VQSLOD=8.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:87:87,0,244
1	236577762	rs625443	C	T	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=-0.769;SB=0.00;SOR=0.223;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,3:10:89:89,0,257
1	236577762	.	C	CT	269.74	PASS	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.97;RPA=6,7;RU=T;SB=0.00;SOR=4.804;STR;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:307,30,0
1	236590497	rs1759388	C	G	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=0.391;SB=-1.440e+02;SOR=0.268;VQSLOD=7.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,12:27:99:272,0,438
1	236590563	rs1778861	C	T	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.113;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=0.374;SB=-2.630e+02;SOR=0.477;VQSLOD=7.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,23:57:99:564,0,1007
1	236590629	rs636378	C	T	589.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.334;HaplotypeScore=4.5939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=-0.785;SB=-3.940e+02;SOR=0.348;VQSLOD=7.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,26:75:99:618,0,1367
1	236590659	rs636048	G	C	480.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=1.992;HaplotypeScore=3.7212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.94;ReadPosRankSum=0.133;SB=-2.530e+02;SOR=0.599;VQSLOD=6.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:56,25:81:99:509,0,1326
1	236590816	rs635487	T	G	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.469;SB=-6.700e+01;SOR=0.836;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:233,0,199
1	236700807	rs1126407	T	A	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.914;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.26;ReadPosRankSum=-1.536;SB=-1.400e+02;SOR=0.779;VQSLOD=7.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,15:56:99:323,0,1149
1	236700823	rs1041934	T	C	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.711;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.334;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=-1.551;SB=-1.530e+02;SOR=1.022;VQSLOD=7.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,19:62:99:436,0,1274
1	236700857	rs1041935	C	T	515.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=0.517;SB=-2.360e+02;SOR=1.204;VQSLOD=7.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,22:66:99:544,0,1264
1	236700962	.	G	A	850.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.953;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.609;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.02;ReadPosRankSum=0.307;SB=-3.010e+02;SOR=1.200;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,30:50:99:879,0,489
1	236700982	rs2737706	T	C	416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.186;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=5.295;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=0.050;SB=-2.090e+02;SOR=0.198;VQSLOD=7.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,17:43:99:445,0,781
1	236702209	rs1041936	C	T	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.144;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.216;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=1.347;SB=-1.450e+02;SOR=0.273;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:252,0,135
1	236702210	rs1041937	A	G	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.119;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.060;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.963;SB=-1.480e+02;SOR=0.343;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:260,0,132
1	236702374	rs2472126	G	A	633.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.076;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.675;SB=-4.110e+02;SOR=0.581;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,26:47:99:662,0,533
1	236702447	rs12744425	T	G	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.407;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.722;SB=-2.100e+02;SOR=0.465;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:504,0,421
1	236702450	rs12744427	T	C	481.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.401;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.407;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-1.640;SB=-2.100e+02;SOR=0.465;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:510,0,406
1	236702475	rs11807205	A	G	354.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.571;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-0.299;SB=-7.300e+01;SOR=0.276;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:383,0,413
1	236702497	rs67519050	AGTTT	A	421.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.77;RPA=2,1;RU=GTTT;ReadPosRankSum=0.511;SB=0.00;SOR=0.693;STR;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:18:99:459,0,453
1	236702517	rs11807542	T	C	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.041;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=0.361;SB=0.00;SOR=0.941;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:317,0,230
1	236703734	rs2243405	T	C	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=1.248;SB=-1.765e+00;SOR=1.609;VQSLOD=8.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:99:127,0,178
1	236703767	rs2758994	C	T	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.094;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-0.173;SB=-1.765e+00;SOR=1.781;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:302,0,240
1	236703832	rs34818366	CG	C	540.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;RPA=8,7;RU=G;ReadPosRankSum=0.379;SB=-1.460e+02;SOR=0.859;STR;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:578,0,637
1	236704888	rs144376212	ATAT	A	596.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=28.42;ReadPosRankSum=2.419;SB=-1.395e+02;SOR=0.446;VQSLOD=5.85;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,17:22:99:634,0,208
1	236704893	rs145490157	A	C	545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.81;ReadPosRankSum=2.783;SB=-1.245e+02;SOR=0.330;VQSLOD=6.28;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,17:22:99:574,0,131
1	236704894	.	A	AGGTT	845.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.237;DP=23;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.58;ReadPosRankSum=3.082;SB=-1.805e+02;SOR=0.252;VQSLOD=3.31;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,17:23:99:883,0,286
1	236704899	rs2853610	T	A	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.270;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.12;ReadPosRankSum=2.871;SB=-1.205e+02;SOR=0.252;VQSLOD=4.03;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,17:23:99:560,0,173
1	236706352	rs2758174	A	C	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.575;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=1.460;SB=-9.900e+01;SOR=0.476;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:31:99:323,0,517
1	236706371	rs2758175	A	G	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.196;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.594;SB=-7.000e+01;SOR=0.512;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:313,0,348
1	236706425	rs2244267	G	A	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-0.462;SB=-3.500e+01;SOR=0.693;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:171,0,173
1	236706671	rs2243530	T	A	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.92;ReadPosRankSum=1.806;SB=0.00;SOR=2.448;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,12:15:68:387,0,68
1	236706780	rs2243527	C	T	1121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.313;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-1.309;SB=-2.340e+02;SOR=0.693;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,37:74:99:1150,0,1038
1	236706862	rs2243525	G	C	1799.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=1.376;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-0.449;SB=-1.046e+03;SOR=0.547;VQSLOD=7.25;culprit=DP	GT:AD:DP:GQ:PL	0/1:66,69:135:99:1828,0,1718
1	236707007	rs2799410	C	T	1250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=-2.091;SB=-5.570e+02;SOR=0.859;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,50:95:99:1279,0,1274
1	236707036	rs2794786	A	T	1026.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.156;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.946;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.581;SB=-3.120e+02;SOR=0.920;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,37:78:99:1055,0,1073
1	236707045	rs2799409	C	T	893.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=1.036;SB=-3.230e+02;SOR=0.663;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,33:70:99:922,0,977
1	236708022	rs5781896	GT	G	141.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;DB;DP=21;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.09;RPA=11,10;RU=T;ReadPosRankSum=0.761;SB=-4.403e+01;SOR=0.211;STR;VQSLOD=7.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:21:99:179,0,265
1	236708224	rs2244063	A	C	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.786;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.836;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=1.224;SB=-1.870e+02;SOR=1.276;VQSLOD=7.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,24:58:99:559,0,903
1	236708316	rs2758181	A	G	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.418;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-1.371;SB=-9.732e-01;SOR=1.765;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,10:26:99:322,0,544
1	236711297	rs2254823	A	T	46.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.767;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.92;ReadPosRankSum=0.874;SB=-9.732e-01;SOR=0.693;VQSLOD=8.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,3:16:75:75,0,409
1	236711323	rs15701	T	C	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.44;ReadPosRankSum=-0.378;SB=-5.150e-01;SOR=1.112;VQSLOD=8.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:77:77,0,441
1	236711586	rs1160	G	A	517.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.280;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=1.577;SB=-2.330e+02;SOR=0.384;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,19:44:99:546,0,676
1	236714064	rs6989	A	C	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=-0.624;SB=-1.240e+02;SOR=0.418;VQSLOD=9.97;culprit=SOR	GT:AD:DP:GQ:PL	0/1:11,16:27:99:429,0,330
1	236714292	.	T	TA	165.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;DP=42;ExcessHet=3.0103;FS=7.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.48;RPA=18,19;RU=A;ReadPosRankSum=0.583;SB=-1.133e+01;SOR=2.584;STR;VQSLOD=4.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,14:42:99:203,0,300
1	236714335	rs2254487	C	T	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-0.379;SB=-1.227e+01;SOR=1.179;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:251,0,400
1	236716686	rs1475133	G	A	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.019;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-1.486;SB=-4.176e+01;SOR=0.527;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,15:23:99:431,0,266
1	236716691	.	TAAAAAACAAA	T	997.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=1.493;QD=11.09;ReadPosRankSum=1.518;SB=-2.801e+01;SOR=0.223;VQSLOD=1.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,9:27:99:1035,0,2317
1	236716741	rs1475132	G	A	947.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.322;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.21;MQ0=0;MQRankSum=-1.205;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=0.715;SB=-1.050e+02;SOR=0.837;VQSLOD=3.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,31:51:99:976,0,563
1	236716959	rs2275685	C	T	1964.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.934;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=2.155;HaplotypeScore=4.2738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=1.324;SB=-9.890e+02;SOR=0.926;VQSLOD=7.70;culprit=DP	GT:AD:DP:GQ:PL	0/1:68,72:140:99:1993,0,1744
1	236717104	rs2275686	A	G	836.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.519;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=5.501;HaplotypeScore=3.6153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.830;SB=-2.880e+02;SOR=0.163;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,31:51:99:865,0,558
1	236717926	rs2275687	T	C	648.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.778;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.121;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.220;SB=-3.340e+02;SOR=1.136;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:677,0,695
1	236718524	rs6668848	G	C	481.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.337;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=-0.991;SB=0.00;SOR=1.329;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:510,0,254
1	236718561	rs6668926	G	A	590.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.726;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.592;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=1.580;SB=-9.500e+01;SOR=1.467;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,21:37:99:619,0,441
1	236718620	rs1126627	T	C	1014.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.646;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.959;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-0.328;SB=-5.910e+02;SOR=0.556;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,40:66:99:1043,0,712
1	236718952	.	C	T	552.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.227;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.869;SB=-2.630e+02;SOR=1.075;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,22:42:99:581,0,456
1	236719135	rs1885532	T	C	2298.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-7.630e+02;SOR=2.082;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2327,172,0
1	236719193	.	A	G	927.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;DP=97;Dels=0.00;ExcessHet=3.0103;FS=8.357;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-0.199;SB=-4.490e+02;SOR=0.731;VQSLOD=4.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,39:97:99:956,0,1433
1	236719259	rs1885534	G	A	1054.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.514;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-0.562;SB=-4.980e+02;SOR=0.641;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,40:95:99:1083,0,1540
1	236719688	rs1407518	A	G	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=4.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=0.640;SB=-1.765e+00;SOR=2.636;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:271,0,122
1	236720761	rs2799404	T	C	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.578;HaplotypeScore=2.7880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=-1.363;SB=-2.610e+02;SOR=1.244;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,25:48:99:718,0,565
1	236720833	rs2759005	C	T	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.796;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.53;ReadPosRankSum=0.297;SB=-1.020e+02;SOR=0.330;VQSLOD=7.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,9:26:99:224,0,435
1	236721610	rs2275688	G	A	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-0.304;SB=-1.670e+02;SOR=1.042;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,17:41:99:483,0,579
1	236721660	rs2275689	T	C	792.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.277;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=6.243;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-0.227;SB=-2.310e+02;SOR=1.802;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,24:48:99:821,0,669
1	236721731	rs819431	T	C	1821.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-9.940e+02;SOR=0.941;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1850,138,0
1	236722182	rs819432	A	T	1287.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-2.261e+02;SOR=3.145;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1316,99,0
1	236722489	rs2146122	C	T	557.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=1.749;SB=-3.400e+01;SOR=1.670;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:586,0,381
1	236723177	rs10754576	G	A	922.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-0.047;SB=-2.720e+02;SOR=0.804;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,32:58:99:951,0,722
1	236723178	rs10754577	C	A	927.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.390;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=-0.217;SB=-2.730e+02;SOR=0.665;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,32:57:99:956,0,736
1	236724504	rs1077439	G	A	452.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.575;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.467;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=0.085;SB=-1.611e+01;SOR=1.460;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,16:44:99:481,0,791
1	236724605	rs1077438	G	T	836.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.484;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.839;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-0.212;SB=-5.380e+02;SOR=0.598;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,35:79:99:865,0,1239
1	236724715	rs1077437	T	G	625.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.954;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-0.681;SB=-1.060e+02;SOR=0.643;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,21:43:99:654,0,631
1	236724766	rs1077436	C	T	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.188;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.37;ReadPosRankSum=-0.797;SB=0.00;SOR=0.247;VQSLOD=9.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,8:24:99:229,0,585
1	236729458	rs2564744	G	C	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=2.091;SB=0.00;SOR=0.368;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:166,0,282
1	236732145	rs2794779	C	G	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.77;ReadPosRankSum=-0.426;SB=0.00;SOR=0.188;VQSLOD=10.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:123,0,370
1	236732198	.	CA	C	364.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;DP=30;ExcessHet=3.0103;FS=2.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.51;RPA=12,11;RU=A;ReadPosRankSum=-1.383;SB=-8.051e+01;SOR=0.201;STR;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,19:30:72:402,0,72
1	236735939	rs2853602	T	C	1420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-1.353;SB=-5.970e+02;SOR=0.784;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1449,0,1624
1	236739416	rs2115740	C	T	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.402;SB=-1.250e+02;SOR=0.560;VQSLOD=9.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,16:42:99:469,0,753
1	236740039	rs6658793	G	C	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.901;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-0.435;SB=-9.732e-01;SOR=1.863;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:202,0,289
1	236744424	.	A	AT	149.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;RPA=9,10;RU=T;ReadPosRankSum=2.166;SB=0.00;SOR=1.802;STR;VQSLOD=8.83;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:48:187,0,48
1	236744712	rs4518892	C	A	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.982;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=-0.218;SB=-3.300e+01;SOR=1.292;VQSLOD=10.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:417,0,229
1	236745940	.	T	C	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.56;ReadPosRankSum=-0.154;SB=0.00;SOR=0.693;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:203,0,195
1	236746275	rs2794769	G	C	1130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=2.847;HaplotypeScore=3.6646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=1.275;SB=-6.990e+02;SOR=0.446;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1159,0,1194
1	236746443	rs2794768	C	T	632.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.206;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.110;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.000;SB=-3.490e+02;SOR=0.881;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,26:47:99:661,0,667
1	236748505	rs1006456	T	C	628.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.349;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=0.615;SB=-3.460e+02;SOR=0.666;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,23:51:99:657,0,709
1	236748630	rs1006455	C	T	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.409;SB=0.00;SOR=0.693;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:255,0,271
1	236748636	rs1006454	G	A	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.000;SB=0.00;SOR=0.836;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:229,0,199
1	236749022	rs10925166	G	A	289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=2.034;SB=0.00;SOR=2.494;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:318,0,160
1	236749026	rs10925167	T	A	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=1.576;SB=0.00;SOR=2.670;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:342,0,155
1	236749348	rs2794764	C	T	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-1.071;SB=-4.176e+01;SOR=0.368;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:233,0,169
1	236749649	rs2794763	T	C	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.648;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.893;SB=-1.570e+02;SOR=0.921;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:345,0,294
1	236749817	rs2799420	C	T	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=0.678;SB=-1.050e+02;SOR=0.252;VQSLOD=7.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,7:15:99:174,0,221
1	236751519	rs34200005	GA	G	261.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.17;ReadPosRankSum=1.687;SB=0.00;SOR=1.609;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:11:99:299,0,113
1	236754110	rs78564511	A	G	634.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.691;SB=-5.150e-01;SOR=2.066;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,21:39:99:663,0,531
1	236755170	rs2794760	G	T	424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.55;SB=-1.891e+02;SOR=1.609;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:453,33,0
1	236755427	rs2794759	A	G	972.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-4.130e+02;SOR=1.609;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:1001,72,0
1	236757200	rs2564738	A	G	610.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-1.125e+02;SOR=2.948;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:639,48,0
1	236757229	rs2794754	G	A	753.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-2.231e+02;SOR=2.124;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:782,60,0
1	236757507	rs2794753	A	G	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=1.600;SB=0.00;SOR=1.179;VQSLOD=10.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:281,0,161
1	236758887	rs2794751	T	C	1701.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.45;SB=-9.690e+02;SOR=0.976;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1730,123,0
1	236759060	rs2794750	T	C	1425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-5.230e+02;SOR=1.552;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1454,108,0
1	236760368	rs2564737	T	C	228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-0.821;SB=0.00;SOR=0.693;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:257,0,304
1	236767176	.	C	G	685.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.654;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=52.4238;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=-1.001;QD=17.14;ReadPosRankSum=0.352;SB=-1.270e+02;SOR=0.818;VQSLOD=1.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,21:41:99:714,0,511
1	236767178	rs5781902	AG	A	1370.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.73;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;RPA=4,3;RU=G;SB=-3.080e+02;SOR=2.584;STR;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1408,128,0
1	236767330	rs10802551	A	G	1951.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-7.750e+02;SOR=1.536;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1980,144,0
1	236881403	rs2275399	C	T	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=1.437;SB=0.00;SOR=0.693;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:166,0,164
1	236882110	rs1341865	G	A	2161.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-7.550e+02;SOR=1.911;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2190,163,0
1	236882303	rs1341864	T	C	1662.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-4.900e+02;SOR=2.437;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1691,132,0
1	236883161	rs1773444	A	G	570.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=-7.597e+01;SOR=3.383;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:599,51,0
1	236883240	rs1768053	T	C	1364.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-5.080e+02;SOR=1.662;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1393,105,0
1	236883421	rs1341863	C	T	1604.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-8.280e+02;SOR=1.051;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1633,120,0
1	236883564	rs1341862	G	A	878.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.35;SB=-3.390e+02;SOR=1.839;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:66:907,66,0
1	236890781	rs1768056	A	G	751.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-7.897e+01;SOR=4.003;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:63:780,63,0
1	236894647	rs819640	G	A	1067.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.819;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=2.030;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-1.554;SB=-3.950e+02;SOR=0.963;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,39:72:99:1096,0,879
1	236897633	rs707203	A	G	1444.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.40;SB=-3.200e+02;SOR=2.780;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1473,108,0
1	236897926	rs75131881	G	A	59.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.98;ReadPosRankSum=-0.984;SB=-1.765e+00;SOR=0.836;VQSLOD=9.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:88:88,0,220
1	236899899	rs11355106	TC	T	1483.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;DB;DP=109;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;RPA=5,4;RU=C;ReadPosRankSum=0.692;SB=-6.030e+02;SOR=0.840;STR;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,48:109:99:1521,0,1949
1	236900018	rs7542508	G	A	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.165;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=0.364;SB=-5.500e+01;SOR=0.909;VQSLOD=8.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,13:41:99:368,0,819
1	236902560	rs7527525	C	T	750.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.277;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=4.828;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.762;SB=-2.740e+02;SOR=0.197;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,28:56:99:779,0,822
1	236902594	rs2288601	C	G	2426.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-1.107e+03;SOR=1.501;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2455,178,0
1	236902865	rs2288602	A	C	1569.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.784;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=1.369;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.071;SB=-9.260e+02;SOR=0.535;VQSLOD=6.98;culprit=DP	GT:AD:DP:GQ:PL	0/1:78,60:138:99:1598,0,1966
1	236902955	rs7544174	T	C	1151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.447;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.109;SB=-3.980e+02;SOR=0.671;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,42:95:99:1180,0,1568
1	236911137	rs10925211	A	G	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.325;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=0.581;SB=-2.601e+01;SOR=1.022;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:229,0,410
1	236912286	rs2297956	G	A	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=0.00;SOR=4.977;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
1	236912597	rs2297955	A	G	1210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.038;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=5.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.359;SB=-1.300e+02;SOR=1.609;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,40:86:99:1239,0,1296
1	236912656	rs3818883	G	T	533.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.435;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=-0.819;SB=-6.800e+01;SOR=0.693;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:562,0,604
1	236914610	rs3738545	G	C	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=0.386;SB=0.00;SOR=0.307;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:157,0,317
1	236924506	rs2282366	A	G	1729.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-6.230e+02;SOR=1.609;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1758,132,0
1	236925844	rs12063382	G	A	1430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.615;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.568;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=0.082;SB=-8.030e+02;SOR=0.929;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,54:106:99:1459,0,1368
1	236926030	rs1051251	A	G	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DB;DP=23;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.067;SB=0.00;SOR=0.540;VQSLOD=10.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:324,0,375
1	236978992	rs35668201	T	TTCTG	416.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;DB;DP=19;ExcessHet=3.0103;FS=8.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.587;SB=-1.480e+02;SOR=0.033;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:19:99:454,0,587
1	237002002	rs73129143	A	C	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=-0.920;SB=-3.401e+01;SOR=0.693;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:341,0,367
1	237024397	.	CT	C	66.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=1.017;POSITIVE_TRAIN_SITE;QD=2.09;RPA=16,15;RU=T;ReadPosRankSum=1.445;SB=-9.732e-01;SOR=1.244;STR;VQSLOD=2.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,10:35:99:104,0,464
1	237037881	rs58213669	A	T	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.484;SB=0.00;SOR=0.569;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:201,0,241
1	237037998	rs150727404	CT	C	779.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.84;RPA=10,9;RU=T;ReadPosRankSum=1.670;SB=-1.940e+02;SOR=0.772;STR;VQSLOD=6.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,48:118:99:817,0,1380
1	237038161	rs1770449	T	C	2744.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.909;DB;DP=227;Dels=0.00;ExcessHet=3.0103;FS=5.581;HaplotypeScore=1.8650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.407;SB=-1.277e+03;SOR=1.044;VQSLOD=5.79;culprit=DP	GT:AD:DP:GQ:PL	0/1:117,110:227:99:2773,0,2850
1	237048562	rs2275566	G	A	509.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.401;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-0.669;SB=-1.700e+02;SOR=0.160;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:538,0,358
1	237058996	rs66495896	C	CTATT	840.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.66;RPA=1,2;RU=TATT;ReadPosRankSum=0.512;SB=-1.970e+02;SOR=0.446;STR;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:24:99:878,0,481
1	237060433	rs3820571	G	T	1105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.124;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-0.682;SB=-5.040e+02;SOR=0.698;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,44:85:99:1134,0,1047
1	237060945	.	CT	C	762.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=0.976;POSITIVE_TRAIN_SITE;QD=8.03;RPA=15,14;RU=T;ReadPosRankSum=-0.976;SB=-2.830e+02;SOR=0.738;STR;VQSLOD=1.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,49:104:99:800,0,878
1	237061056	rs2853522	A	C	529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.790;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=-1.766;SB=-4.276e+01;SOR=0.407;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:558,0,339
1	237063335	rs1050996	G	C	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=-1.558;SB=-2.200e+02;SOR=0.591;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,16:25:99:438,0,221
1	237516111	rs147003424	G	C	570.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-0.525;SB=-3.140e+02;SOR=0.728;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:599,0,757
1	237551241	rs67140198	G	GTC	724.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.07;RPA=1,2;RU=TC;ReadPosRankSum=1.792;SB=-9.700e+01;SOR=0.495;STR;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,17:39:99:762,0,928
1	237551376	rs10754602	T	A	1545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.08;MQ0=0;MQRankSum=1.103;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.363;SB=-8.950e+02;SOR=0.685;VQSLOD=0.033;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,60:131:99:1574,0,1744
1	237580606	rs6673182	G	T	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=-0.908;SB=0.00;SOR=0.330;VQSLOD=9.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:123,0,255
1	237580612	rs6673187	G	C	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=-1.104;SB=0.00;SOR=0.330;VQSLOD=9.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:127,0,251
1	237617757	rs3765097	C	T	829.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.66;SB=-4.970e+02;SOR=0.826;VQSLOD=7.03;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,30:30:63:858,63,0
1	237619875	.	A	AT	1868.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DP=100;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.07;RPA=14,15;RU=T;ReadPosRankSum=1.305;SB=-6.294e+02;SOR=0.544;STR;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,83:100:35:1906,0,35
1	237620049	rs2045955	T	C	2874.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-9.100e+02;SOR=2.022;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2903,211,0
1	237632285	rs66596894	A	AT	554.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=0.00;SOR=5.136;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:592,36,0
1	237632595	.	T	TGTG	678.73	PASS	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;RPA=3,4;RU=GTG;SB=0.00;SOR=5.283;STR;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:22:39:716,39,0
1	237654831	rs2127155	G	T	719.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.27;SB=-1.105e+02;SOR=3.160;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:748,54,0
1	237656185	.	A	AAGGGAGGG	893.74	PASS	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;RPA=5,7;RU=AGGG;SB=0.00;SOR=4.615;STR;VQSLOD=8.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:10:27:931,27,0
1	237693921	rs2779365	A	G	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.28;ReadPosRankSum=-0.536;SB=0.00;SOR=0.223;VQSLOD=9.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:81:81,0,258
1	237711644	rs2618661	T	C	761.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-7.997e+01;SOR=3.816;VQSLOD=5.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:790,57,0
1	237711797	rs2253273	A	G	2146.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SB=-1.308e+03;SOR=0.779;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2175,163,0
1	237714103	rs2306238	G	A	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.576;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.048;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-0.319;SB=-2.150e+02;SOR=0.636;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:411,0,539
1	237729774	rs2248295	G	A	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=0.00;SOR=6.358;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:867,66,0
1	237730124	rs2805390	A	G	3313.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-6.510e+02;SOR=2.857;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3342,244,0
1	237730169	rs2779401	C	T	1575.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-4.076e+01;SOR=6.091;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1604,123,0
1	237732332	rs2618717	C	T	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.03;SB=0.00;SOR=4.804;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
1	237732395	rs2805396	G	A	1009.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-8.097e+01;SOR=4.332;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:1038,78,0
1	237753074	rs11331089	AT	A	441.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=58;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.75;RPA=10,9;RU=T;ReadPosRankSum=-1.649;SB=-9.500e+01;SOR=1.022;STR;VQSLOD=7.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,24:58:99:479,0,833
1	237753364	rs2805409	A	C	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.702;SB=0.00;SOR=0.551;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:169,0,198
1	237754340	rs1332777	A	G	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.668;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.78;ReadPosRankSum=1.483;SB=0.00;SOR=0.148;VQSLOD=9.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:99:138,0,510
1	237755188	rs2618713	C	T	788.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.028;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.328;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-1.627;SB=-2.780e+02;SOR=0.426;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,28:47:99:817,0,575
1	237755203	rs2779430	T	C	684.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.051;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=-0.683;SB=-1.770e+02;SOR=0.683;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,23:42:99:713,0,500
1	237757027	rs1478915	G	A	126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.45;ReadPosRankSum=1.289;SB=0.00;SOR=0.260;VQSLOD=9.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:155,0,351
1	237765200	rs2805418	G	A	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.18;ReadPosRankSum=0.536;SB=0.00;SOR=0.223;VQSLOD=9.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:90:90,0,228
1	237765470	rs791541	A	T	639.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-0.123;SB=-1.280e+02;SOR=0.760;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,23:40:99:668,0,474
1	237774395	rs2274900	G	A	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.847;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.453;SB=-3.400e+01;SOR=1.244;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:352,0,203
1	237788844	rs571092	T	C	255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=-0.577;SB=0.00;SOR=1.802;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:87:284,0,87
1	237788862	rs571026	T	C	258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=-0.743;SB=-4.276e+01;SOR=0.593;VQSLOD=10.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:287,0,118
1	237794603	rs1759123	A	G	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.196;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=-1.775;SB=-3.500e+01;SOR=0.321;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:227,0,412
1	237801770	rs707189	T	C	6051.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-2.300e+03;SOR=1.746;VQSLOD=4.65;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,179:179:99:6080,439,0
1	237802559	rs530109	T	C	2132.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-7.940e+02;SOR=1.793;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2161,157,0
1	237806763	rs76678214	A	G	1392.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.758;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=6.701;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-1.314;SB=-5.030e+02;SOR=1.431;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,50:100:99:1421,0,1362
1	237806789	rs138954285	G	A	992.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.538;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=5.046;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=1.383;SB=-2.050e+02;SOR=1.495;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,34:81:99:1021,0,1269
1	237806919	.	C	CT	168.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.88;RPA=11,12;RU=T;ReadPosRankSum=0.674;SB=0.00;SOR=3.258;STR;VQSLOD=6.15;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:1,9:15:19:206,19,0
1	237813126	rs625006	A	G	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.548;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-0.702;SB=0.00;SOR=0.859;VQSLOD=10.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:206,0,159
1	237817514	rs3831940	GA	G	211.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.21;RPA=9,8;RU=A;ReadPosRankSum=-0.216;SB=0.00;SOR=0.776;STR;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:249,0,243
1	237824332	rs471647	G	A	943.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-1.951e+02;SOR=2.833;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:972,72,0
1	237831103	rs477245	C	A	744.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.64;SB=-2.031e+02;SOR=2.670;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:773,57,0
1	237850666	.	C	CTT	173.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;DP=19;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=1.383;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=9.65;RPA=18,20;RU=T;ReadPosRankSum=0.133;SB=-1.766e+00;SOR=2.147;STR;VQSLOD=0.294;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:211,0,105
1	237862164	rs1521745	G	C	598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.854;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.292;SB=-1.060e+02;SOR=1.445;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,20:32:99:627,0,322
1	237862436	rs1521744	T	C	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.829;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.99;ReadPosRankSum=1.962;SB=0.00;SOR=1.371;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:402,0,174
1	237862458	rs3736539	A	G	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.37;ReadPosRankSum=0.295;SB=0.00;SOR=1.609;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:332,0,115
1	237863439	rs12754190	G	A	817.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.547;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=-1.792;SB=-1.400e+02;SOR=0.693;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,28:38:99:846,0,299
1	237863718	rs2797436	T	G	2550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=-8.130e+02;SOR=1.874;VQSLOD=7.03;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2579,193,0
1	237865203	rs939699	C	T	1943.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-3.030e+02;SOR=3.422;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1972,147,0
1	237881770	rs2797441	C	T	1591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.93;SB=-9.960e+02;SOR=0.960;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1620,114,0
1	237890437	rs2685301	C	T	4458.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.22;SB=-2.875e+03;SOR=0.744;VQSLOD=5.44;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,158:158:99:4487,322,0
1	237893674	rs2797445	C	T	1318.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6511;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-7.140e+02;SOR=0.990;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1347,99,0
1	237923053	rs2253831	C	T	1437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-5.050e+02;SOR=2.078;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1466,108,0
1	237946964	rs790889	T	C	2010.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-1.109e+03;SOR=1.098;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2039,147,0
1	237951451	rs2256242	A	G	510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-2.051e+02;SOR=1.863;VQSLOD=4.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:539,39,0
1	237951482	rs16835818	G	A	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.528;SB=-3.401e+01;SOR=0.527;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:138,0,180
1	237957146	rs790902	G	A	458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.737;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=-0.848;SB=-1.205e+02;SOR=0.223;VQSLOD=6.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,16:22:99:487,0,156
1	237957161	rs790901	A	G	969.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=-1.911e+02;SOR=2.833;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:998,72,0
1	237957309	rs790900	A	C	1373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-5.280e+02;SOR=1.501;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1402,102,0
1	237961575	.	A	AATAG	329.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.66;RPA=2,3;RU=ATAG;ReadPosRankSum=-1.272;SB=0.00;SOR=0.473;STR;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:22:99:367,0,461
1	237964934	rs7543732	A	G	643.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.08;SB=0.00;SOR=5.784;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:672,51,0
1	237982270	rs2275691	C	T	953.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.615;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.429;HaplotypeScore=3.3381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=0.534;SB=-2.110e+02;SOR=0.425;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,33:59:99:982,0,687
1	237994957	rs4659818	G	A	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.256;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-0.042;SB=-9.900e+01;SOR=0.675;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:387,0,466
1	238046253	rs2794814	T	C	772.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=0.00;SOR=6.273;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:801,66,0
1	238048325	rs2298100	A	G	1566.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-7.860e+02;SOR=0.883;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1595,117,0
1	238051933	rs2236595	C	T	569.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-1.573e+02;SOR=2.419;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:598,45,0
1	238053524	rs538499	T	C	923.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=-3.210e+02;SOR=1.697;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:75:952,75,0
1	238655362	rs2392861	A	G	574.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-3.160e+02;SOR=0.804;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:603,45,0
1	240255568	rs140531536	GGGC	G	633.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;RPA=5,4;RU=GGC;SB=-8.097e+01;SOR=2.833;STR;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:15:39:671,39,0
1	240256822	rs10926124	C	A	703.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.525;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.171;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=1.314;SB=-2.720e+02;SOR=0.484;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,22:48:99:732,0,682
1	240286716	rs3738433	G	A	658.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.554;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=-0.756;SB=-2.100e+02;SOR=0.773;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,28:65:99:687,0,974
1	240286805	rs114062033	C	A	43.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=23.6029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.19;ReadPosRankSum=1.694;SB=0.00;SOR=0.048;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,3:20:72:72,0,456
1	240305899	rs12746598	C	T	721.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.624;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.111;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.039;SB=-3.640e+02;SOR=0.538;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,29:50:99:750,0,596
1	240307389	rs2355833	C	G	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.681;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-1.668;SB=-3.770e+02;SOR=0.593;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:636,0,551
1	240307892	rs1539200	A	G	1035.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.085;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=7.049;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=-0.595;SB=-6.710e+02;SOR=0.202;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,38:64:99:1064,0,705
1	240308147	rs10926139	T	C	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=1.509;SB=-1.440e+02;SOR=1.270;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:313,0,130
1	240308200	rs12127949	T	C	269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=4.832;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=-0.736;SB=-1.000e+02;SOR=1.518;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:298,0,122
1	240308348	rs10926140	C	G	238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.597;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.408;SB=-1.820e+02;SOR=0.627;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:267,0,176
1	240308366	rs12127948	A	G	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.325;SB=-1.610e+02;SOR=0.693;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:249,0,168
1	240308382	rs10926141	C	A	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=0.490;SB=-1.610e+02;SOR=0.446;VQSLOD=10.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:241,0,134
1	240351628	rs4659948	T	C	1573.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=6.148;HaplotypeScore=1.7306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=1.139;SB=-7.610e+02;SOR=1.165;VQSLOD=6.82;culprit=DP	GT:AD:DP:GQ:PL	0/1:85,61:146:99:1602,0,2297
1	240370629	rs10926166	C	G	879.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.787;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=-0.862;SB=-3.490e+02;SOR=0.846;VQSLOD=6.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:64,38:102:99:908,0,1683
1	240421383	rs10926181	G	A	511.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.449;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=-0.370;SB=-3.400e+01;SOR=1.136;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:540,0,328
1	240492543	rs6686353	G	A	408.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.278;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.407;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=1.688;SB=-9.300e+01;SOR=1.402;VQSLOD=7.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,14:32:99:437,0,430
1	240492734	rs3795677	G	A	1110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=2.543;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=0.524;SB=-5.350e+02;SOR=0.996;VQSLOD=7.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:64,46:110:99:1139,0,1560
1	240492952	rs3795679	G	C	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-1.056;SB=-9.300e+01;SOR=0.818;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:282,0,304
1	240497265	rs10157874	A	C	525.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.084;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.013;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=-0.022;SB=-3.210e+02;SOR=0.963;VQSLOD=7.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,23:61:99:554,0,951
1	240497598	rs12122068	T	C	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.006;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.973;SB=-1.765e+00;SOR=1.414;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:390,0,549
1	240497657	rs10926220	C	T	277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.254;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=-0.051;SB=0.00;SOR=0.941;VQSLOD=10.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:306,0,201
1	240637571	rs882869	A	G	547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-0.520;SB=-1.700e+02;SOR=0.722;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,21:48:99:576,0,753
1	240643167	rs11578184	A	C	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-0.516;SB=0.00;SOR=0.804;VQSLOD=10.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:308,0,269
1	240643184	rs9442211	C	T	396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.990;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=-0.245;SB=-4.076e+01;SOR=0.223;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:425,0,392
1	240643435	rs12748248	A	T	399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.314;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=0.709;SB=-1.010e+02;SOR=0.551;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:428,0,183
1	240655330	rs9287248	G	A	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=-0.692;SB=-1.603e+02;SOR=0.250;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,11:13:55:271,0,55
1	240656824	rs10926280	C	A	692.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.826;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=5.391;HaplotypeScore=6.8342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-1.121;SB=-9.000e+01;SOR=1.850;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,24:49:99:721,0,652
1	240975213	rs2275742	T	C	283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.442;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=9.548;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.31;ReadPosRankSum=-0.478;SB=-1.700e+02;SOR=0.085;VQSLOD=6.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,14:45:99:312,0,1009
1	240975435	rs2275744	C	T	265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.465;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.733;SB=-2.501e+01;SOR=1.819;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:294,0,367
1	240976706	rs149188218	CAATGCAAATCTTAATGCA	C	1947.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;RPA=2,1;RU=AATGCAAATCTTAATGCA;SB=0.00;SOR=4.804;STR;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:1985,30,0
1	240977964	rs12744536	G	T	455.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.61;SB=-4.176e+01;SOR=3.767;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:484,36,0
1	240979803	rs3738068	G	A	1351.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=0.00;SOR=7.223;VQSLOD=4.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1380,105,0
1	241261787	rs12026118	C	T	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.25;ReadPosRankSum=0.660;SB=0.00;SOR=2.494;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:52:273,0,52
1	241519098	rs4659599	T	A	2410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-1.357e+03;SOR=1.058;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:82:99:2439,181,0
1	241663902	.	TGA	T	284.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=0.056;QD=8.37;RPA=19,18;RU=GA;ReadPosRankSum=-0.875;SB=-6.300e+01;SOR=0.914;STR;VQSLOD=1.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,12:52:99:322,0,638
1	241669256	rs145209119	C	T	1062.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.342;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.742;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-0.015;SB=-3.490e+02;SOR=0.345;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,39:79:99:1091,0,1198
1	241728198	rs12139441	A	G	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.950;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-0.372;SB=-9.800e+01;SOR=0.610;VQSLOD=10.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:380,0,331
1	241729614	rs10754731	T	G	434.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.603e+02;SOR=1.765;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:463,33,0
1	241729687	rs140702304	AAGCTCCCTGGTCAC	A	1879.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=1.112;QD=14.92;ReadPosRankSum=-0.316;SB=-4.930e+02;SOR=0.610;VQSLOD=1.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,13:27:99:1917,0,2285
1	241730153	rs9970943	G	T	659.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.443e+02;SOR=2.531;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:688,51,0
1	241751899	rs34879227	GTCA	G	431.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=1.088;SB=0.00;SOR=0.693;VQSLOD=8.83;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,8:17:99:469,0,483
1	241755348	rs1053230	C	T	656.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.008;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.509;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.392;SB=-2.860e+02;SOR=1.270;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,24:48:99:685,0,584
1	241761349	rs45572340	T	C	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.267;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=-1.735;SB=-9.732e-01;SOR=2.765;VQSLOD=5.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:280,0,269
1	241767930	rs632966	G	A	1978.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-3.510e+02;SOR=3.219;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2007,144,0
1	241798443	rs41269377	G	A	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=7.419;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=0.257;SB=-1.000e+02;SOR=1.718;VQSLOD=6.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,14:38:99:405,0,670
1	241798631	rs3737604	C	T	3342.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-1.566e+03;SOR=1.300;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3371,247,0
1	241838057	rs67170285	C	T	693.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.68;SB=-3.970e+02;SOR=1.220;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:51:722,51,0
1	241838065	rs66585415	T	C	735.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.25;SB=-3.190e+02;SOR=1.528;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:54:764,54,0
1	241847018	rs10802979	C	T	1265.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-4.176e+01;SOR=5.670;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1294,102,0
1	241875241	rs76454190	C	T	722.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.590;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=0.323;SB=-2.820e+02;SOR=0.645;VQSLOD=8.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:51,30:81:99:751,0,1348
1	241875323	rs187412627	G	A	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.918;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=-0.918;SB=-4.176e+01;SOR=0.557;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,19:29:99:634,0,320
1	241886430	rs12748037	C	G	720.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.967;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.337;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-0.227;SB=-2.620e+02;SOR=1.158;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,26:58:99:749,0,821
1	241886790	rs56403213	T	C	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=0.192;SB=-3.400e+01;SOR=0.963;VQSLOD=9.73;culprit=SOR	GT:AD:DP:GQ:PL	0/1:11,15:26:99:430,0,312
1	241912674	rs6669629	A	C	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=-2.188;SB=0.00;SOR=0.976;VQSLOD=10.14;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:264,0,193
1	241913062	.	C	CT	159.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;RPA=5,6;RU=T;ReadPosRankSum=1.236;SB=-2.501e+01;SOR=0.784;STR;VQSLOD=8.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,8:20:99:197,0,296
1	241932567	rs56396922	C	G	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.390;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=0.993;SB=0.00;SOR=0.804;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:315,0,273
1	241933876	rs11809239	A	G	927.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.340;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=10.958;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=0.385;SB=-1.070e+02;SOR=2.190;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,30:63:99:956,0,794
1	241935987	rs35632793	AC	A	230.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=0.415;SB=0.00;SOR=0.836;VQSLOD=10.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:268,0,243
1	241946766	rs953597	A	C	949.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.128;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-0.780;SB=-2.820e+02;SOR=0.743;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,37:68:99:978,0,822
1	241951034	rs6429312	C	T	568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.250;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=-0.688;SB=0.00;SOR=0.598;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:597,0,655
1	241951106	rs6429313	A	G	1395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.355;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=3.248;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=0.397;SB=-5.340e+02;SOR=0.402;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,54:93:99:1424,0,1123
1	241954005	rs35435449	TA	T	233.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;DB;DP=45;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.68;RPA=18,17;RU=A;ReadPosRankSum=0.512;SB=-4.700e+01;SOR=1.483;STR;VQSLOD=6.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,18:45:99:271,0,317
1	241958401	rs66506407	C	CTTGT	1725.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;DB;DP=51;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=0.810;SB=-1.764e+00;SOR=1.734;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,26:51:99:1763,0,1578
1	241958409	rs55865277	C	T	1136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.296;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-0.083;SB=-6.800e+01;SOR=0.504;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,35:63:99:1165,0,879
1	241964559	rs4658661	C	T	1630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=2.200;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.191;SB=-9.190e+02;SOR=0.932;VQSLOD=7.92;culprit=DP	GT:AD:DP:GQ:PL	0/1:69,64:133:99:1659,0,1753
1	242042690	rs1418760	A	G	1022.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.649;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=0.401;SB=-2.010e+02;SOR=1.261;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,37:66:99:1051,0,743
1	242045275	rs1635498	C	T	3571.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-1.941e+03;SOR=1.009;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3600,262,0
1	242048514	.	G	GTAAA	1030.73	PASS	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.75;RPA=5,6;RU=TAAA;SB=-1.230e+02;SOR=3.500;STR;VQSLOD=5.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:20:54:1068,54,0
1	242053042	rs851797	A	G	1406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-1.593e+02;SOR=3.967;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1435,105,0
1	242120914	rs28464028	G	A	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=-0.680;SB=-8.297e+01;SOR=0.446;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:88:329,0,88
1	242161619	rs2049067	C	A	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=2.458;SB=-9.732e-01;SOR=3.180;VQSLOD=5.55;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:172,0,136
1	242161679	rs28408563	G	A	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.674;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.593;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=0.270;SB=-6.500e+01;SOR=1.942;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:341,0,266
1	242222754	rs871766	A	G	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.31;ReadPosRankSum=-1.456;SB=-2.203e+01;SOR=0.941;VQSLOD=8.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:92:92,0,195
1	242223171	rs908969	G	A	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-0.056;SB=-1.330e+02;SOR=0.495;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:272,0,190
1	242223399	rs871765	A	G	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=0.709;SB=-1.020e+02;SOR=1.288;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:289,0,129
1	242383170	rs3051891	T	TAC	2263.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.51;RPA=1,2;RU=AC;SB=-2.421e+02;SOR=3.865;STR;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:46:99:2301,135,0
1	242383201	rs1973498	T	G	2453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.51;SB=-5.700e+02;SOR=2.737;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2482,181,0
1	242383510	rs7547029	T	C	2372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.74;SB=-4.276e+01;SOR=6.804;VQSLOD=0.620;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2401,178,0
1	242511556	rs112478548	AACAAAG	A	2768.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;RPA=2,1;RU=ACAAAG;SB=-9.310e+02;SOR=1.483;STR;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:44:99:2806,105,0
1	242511574	.	T	C	509.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.776;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=-0.184;QD=14.16;ReadPosRankSum=-0.254;SB=-2.110e+02;SOR=0.551;VQSLOD=2.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,17:36:99:538,0,483
1	242687390	rs2810008	G	A	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=7.558;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.733;SB=-1.470e+02;SOR=1.655;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,20:36:99:564,0,403
1	243289752	.	C	T	1198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.101;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.815;SB=-2.660e+02;SOR=0.807;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,47:108:99:1227,0,1821
1	243327521	.	A	T	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.428;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8789;MLEAC=1;MLEAF=0.500;MQ=52.42;MQ0=2;MQRankSum=1.822;QD=10.53;ReadPosRankSum=1.472;SB=0.00;SOR=0.392;VQSLOD=1.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,8:22:99:260,0,333
1	243388370	rs10926973	A	T	1199.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.20;SB=-4.176e+01;SOR=5.610;VQSLOD=3.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:96:1228,96,0
1	243433654	rs2275154	A	G	642.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-2.001e+02;SOR=2.200;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:671,48,0
1	243434558	rs2130597	A	T	427.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.12;SB=0.00;SOR=5.136;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:456,36,0
1	243480036	rs137903012	A	G	762.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.358;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=1.564;SB=-4.900e+02;SOR=0.386;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,32:67:99:791,0,935
1	243481431	rs2783972	A	G	766.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.329;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=1.174;SB=-2.940e+02;SOR=0.633;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,29:45:99:795,0,439
1	243493907	rs2275155	A	T	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.038;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.722;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=1.148;SB=-2.520e+02;SOR=0.184;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:360,0,295
1	243579112	rs10927011	G	A	781.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.763;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-1.954;SB=-1.710e+02;SOR=0.155;VQSLOD=7.94;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:24,27:51:99:810,0,749
1	243777066	rs2168812	G	A	442.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-0.725;SB=-5.900e+01;SOR=1.005;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,16:38:99:471,0,617
1	244528127	rs9782996	T	C	1502.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-2.391e+02;SOR=3.365;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1531,111,0
1	244552134	rs61095163	CATTT	C	384.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=1.036;SB=0.00;SOR=1.085;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:422,0,288
1	244573030	rs2306084	C	A	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.528;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.339;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=0.683;SB=-1.950e+02;SOR=0.200;VQSLOD=7.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,13:35:99:323,0,706
1	244579519	rs3123696	T	C	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=1.116;SB=-1.765e+00;SOR=1.609;VQSLOD=9.94;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:205,0,201
1	244581156	rs6661148	C	A	258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.195;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.19;ReadPosRankSum=0.945;SB=-1.220e+02;SOR=0.495;VQSLOD=8.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,11:36:99:287,0,642
1	244581252	rs140813273	AT	A	102.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.27;RPA=7,6;RU=T;ReadPosRankSum=-0.204;SB=0.00;SOR=1.085;STR;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:11:96:140,0,96
1	244587195	rs57748551	A	G	335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=1.857;SB=-4.500e+01;SOR=0.892;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,15:37:99:364,0,550
1	244587729	rs6679230	A	C	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.896;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=2.491;SB=-1.350e+02;SOR=0.593;VQSLOD=9.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,9:21:99:280,0,323
1	244601152	rs3127465	C	T	1696.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;SB=-1.006e+03;SOR=1.071;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1725,123,0
1	244612984	rs3003211	T	C	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=-1.535;SB=0.00;SOR=0.976;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:283,0,198
1	244624887	rs3124058	T	C	585.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-2.800e+02;SOR=1.179;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:614,45,0
1	244626948	rs35832545	CA	C	95.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.16;RPA=16,15;RU=A;ReadPosRankSum=0.092;SB=-1.767e+00;SOR=1.609;STR;VQSLOD=5.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,11:23:99:133,0,228
1	244653781	rs143247582	AT	A	97.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.52;RPA=6,5;RU=T;ReadPosRankSum=-1.158;SB=-2.203e+01;SOR=0.818;STR;VQSLOD=7.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:17:99:135,0,246
1	244735556	rs4290045	G	C	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.24;SB=0.00;SOR=4.804;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:412,30,0
1	244773514	rs4658645	C	T	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.815;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=0.000;SB=-1.600e+02;SOR=0.542;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,18:46:99:495,0,802
1	244803205	rs60280231	CTT	CT,C	1165.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.615;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.49;RPA=14,13,12;RU=T;ReadPosRankSum=1.576;SB=-4.480e+02;SOR=0.518;STR;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,16,27:47:99:1203,650,557,355,0,371
1	245005373	rs10927335	A	G	297.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-8.197e+01;SOR=1.609;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:326,24,0
1	245005492	rs377483662	T	TG	2452.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.56;SB=-5.040e+02;SOR=2.746;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2490,154,0
1	245005713	rs12095737	A	C	829.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;SB=-1.215e+02;SOR=3.442;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:858,63,0
1	245018456	rs113724064	TAGCA	T	1331.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.70;RPA=2,1;RU=AGCA;SB=-2.115e+02;SOR=3.056;STR;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:22:60:1369,60,0
1	245021132	rs9730334	C	G	928.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-3.900e+02;SOR=1.220;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:957,72,0
1	245021291	rs11299108	TA	T	1644.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.910;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=0.480;QD=20.82;RPA=13,12;RU=A;ReadPosRankSum=0.424;SB=-6.530e+02;SOR=0.670;STR;VQSLOD=1.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,75:81:99:1607,131,0
1	245025697	.	T	TAA	666.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.608;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-0.196;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.22;RPA=19,21;RU=A;ReadPosRankSum=0.597;SB=-6.901e+01;SOR=3.126;STR;VQSLOD=0.502;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,28:33:28:613,28,0
1	245133489	rs7545078	T	G	421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-2.351e+02;SOR=0.976;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:450,33,0
1	245133539	rs7542813	A	G	469.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.70;SB=-1.653e+02;SOR=1.609;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:498,36,0
1	245133549	rs10536649	GGC	G	532.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;RPA=4,3;RU=GC;SB=-1.913e+02;SOR=1.445;STR;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:36:570,36,0
1	245133662	rs61844237	G	C	314.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-8.097e+01;SOR=2.303;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:343,27,0
1	245179011	rs201488109	CA	C	154.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;DB;DP=17;ExcessHet=3.0103;FS=9.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.10;RPA=16,15;RU=A;ReadPosRankSum=0.369;SB=-2.103e+01;SOR=2.640;STR;VQSLOD=4.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,12:17:91:192,0,91
1	245179171	rs1196365	C	T	661.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-2.800e+02;SOR=1.609;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:690,51,0
1	245179188	rs1196366	G	T	622.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-1.603e+02;SOR=2.531;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:651,48,0
1	245222634	rs694793	C	G	1515.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-3.110e+02;SOR=3.033;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1544,123,0
1	245222839	rs579269	G	T	1693.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-4.900e+02;SOR=2.522;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1722,129,0
1	245285197	rs71747075	C	CTTATT	610.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.54;RPA=4,5;RU=TTATT;ReadPosRankSum=0.970;SB=-1.410e+02;SOR=0.693;STR;VQSLOD=6.60;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:2,10:17:93:648,0,93
1	245318688	rs12409851	C	T	808.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=4.473;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-0.500;SB=-4.820e+02;SOR=0.643;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,35:76:99:837,0,1057
1	245703819	rs7551348	T	C	547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.24;SB=-8.297e+01;SOR=3.258;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:576,42,0
1	245703881	.	A	G	524.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.034;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.944;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-0.607;SB=-5.200e+01;SOR=2.194;VQSLOD=5.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,19:42:99:553,0,636
1	245703990	rs9919234	G	T	2527.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-1.263e+03;SOR=1.022;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:76:99:2556,190,0
1	245765800	rs7541927	T	A	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-0.493;SB=-1.290e+02;SOR=0.671;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:418,0,335
1	245771196	rs74154480	C	T	1346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=3.932;HaplotypeScore=2.8931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-0.047;SB=-6.010e+02;SOR=1.139;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,53:97:99:1375,0,1154
1	245847715	rs149909437	TG	T	635.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.308;DB;DP=52;ExcessHet=3.0103;FS=4.517;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=1.431;POSITIVE_TRAIN_SITE;QD=14.13;RPA=7,6;RU=G;ReadPosRankSum=0.227;SB=-1.670e+02;SOR=1.476;STR;VQSLOD=0.355;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,23:52:99:673,0,683
1	245849729	rs3820246	G	A	1010.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.301;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=4.140;HaplotypeScore=2.5655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-1.066;SB=-4.350e+02;SOR=1.218;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,38:88:99:1039,0,1288
1	245850296	rs114792430	C	T	1769.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.831;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=1.439;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=0.514;SB=-9.770e+02;SOR=0.549;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,61:123:99:1798,0,1584
1	245850506	rs3806273	G	C	833.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.246;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-0.633;SB=-5.360e+02;SOR=0.399;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,37:69:99:862,0,931
1	245851289	rs58427858	G	T	935.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-0.112;SB=-4.990e+02;SOR=0.640;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,34:90:99:964,0,1571
1	245851304	rs6701084	A	G	2759.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-1.276e+03;SOR=1.153;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2788,211,0
1	245861571	rs3205034	C	T	825.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.093;HaplotypeScore=2.9453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=0.594;SB=-2.930e+02;SOR=0.536;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,31:56:99:854,0,640
1	245912840	rs8025	C	T	1828.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.73;SB=-1.008e+03;SOR=0.693;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1857,138,0
1	245927242	rs12035406	G	A	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-1.485;SB=-1.390e+02;SOR=0.495;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:411,0,391
1	246021941	rs2362587	T	C	1514.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=2.278;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-1.229;SB=-8.590e+02;SOR=0.508;VQSLOD=7.62;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,58:129:99:1543,0,1881
1	246022071	rs2185370	C	T	937.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.943;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=-0.079;SB=-2.300e+02;SOR=0.536;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,31:54:99:966,0,585
1	246022159	rs2185369	G	A	612.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.04;SB=-1.075e+02;SOR=2.833;VQSLOD=5.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:641,48,0
1	246026947	rs9727434	A	G	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=0.141;SB=0.00;SOR=1.179;VQSLOD=10.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:250,0,156
1	246027024	rs12123124	A	G	559.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.645;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=9.401;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=1.151;SB=-3.023e+02;SOR=0.077;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,21:32:99:588,0,314
1	246027029	rs61830203	A	T	553.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.736;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=9.690;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=1.330;SB=-2.852e+02;SOR=0.065;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:582,0,359
1	246027034	rs2153404	G	C	1081.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-3.710e+02;SOR=2.049;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1110,81,0
1	246078968	rs41305945	G	A	1266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.590;SB=-6.350e+02;SOR=0.756;VQSLOD=8.67;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:50,52:103:99:1295,0,1331
1	246091457	rs6669768	T	C	446.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-1.633e+02;SOR=2.049;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:475,36,0
1	246093465	rs11295264	GA	G	627.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.84;MQ0=0;MQRankSum=1.187;POSITIVE_TRAIN_SITE;QD=13.65;RPA=14,13;RU=A;ReadPosRankSum=0.451;SB=-1.970e+02;SOR=0.846;STR;VQSLOD=3.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,35:51:99:665,0,142
1	246110573	rs10802300	A	G	1483.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.04;SB=-1.593e+02;SOR=4.021;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1512,111,0
1	246670281	rs6671418	G	C	458.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4428;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;SB=-2.620e+02;SOR=0.804;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:36:487,36,0
1	246670298	rs150603688	CCT	C	399.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-1.195e+02;SOR=1.981;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:16:35:437,35,0
1	246670333	rs6426303	A	G	826.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.45;SB=-4.050e+02;SOR=1.051;VQSLOD=3.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:855,63,0
1	246670481	rs7520453	C	G	995.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.45;SB=-6.960e+02;SOR=0.749;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:72:1024,72,0
1	246694480	rs10924771	G	A	270.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.08;SB=-1.205e+02;SOR=1.609;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:299,21,0
1	246711789	rs3124131	T	A	327.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DB;DP=20;Dels=0.05;ExcessHet=3.0103;FS=2.058;HaplotypeScore=1.9662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=-1.523;SB=-6.800e+01;SOR=1.473;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:356,0,195
1	246711816	rs5782396	GA	G	318.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;DB;DP=32;ExcessHet=3.0103;FS=5.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;RPA=5,4;RU=A;ReadPosRankSum=0.704;SB=-1.590e+02;SOR=0.169;STR;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,14:32:99:356,0,517
1	246712033	rs1890160	A	G	659.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.97;SB=0.00;SOR=5.784;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:688,51,0
1	246714587	rs10754526	G	A	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.102;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=7.384;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.70;ReadPosRankSum=-0.597;SB=-4.700e+01;SOR=1.472;VQSLOD=6.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:169,0,330
1	246714631	rs80342781	T	A	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.67;ReadPosRankSum=0.729;SB=-1.352e-01;SOR=2.712;VQSLOD=5.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:119,0,303
1	246714632	rs75477023	G	A	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.869;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.80;ReadPosRankSum=0.849;SB=-2.657e-01;SOR=2.165;VQSLOD=5.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:121,0,331
1	246714636	rs34850511	T	A	88.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.869;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.55;ReadPosRankSum=1.034;SB=-2.657e-01;SOR=2.165;VQSLOD=5.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:117,0,326
1	246720174	rs3120710	A	G	574.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.69;SB=0.00;SOR=5.549;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:603,45,0
1	246720798	rs3124071	G	A	1259.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-7.200e+02;SOR=1.055;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:93:1288,93,0
1	246727558	rs3120713	G	T	615.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;SB=-7.397e+01;SOR=3.500;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:644,48,0
1	246754778	.	G	GA	295.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;DP=35;ExcessHet=3.0103;FS=8.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.45;RPA=4,5;RU=A;ReadPosRankSum=-0.563;SB=-7.297e+01;SOR=0.030;STR;VQSLOD=6.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,13:35:99:333,0,587
1	246755124	rs6702823	T	C	1882.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-1.104e+03;SOR=0.941;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1911,144,0
1	246797710	rs35650980	G	T	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-0.178;SB=-3.401e+01;SOR=0.495;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:237,0,320
1	246797714	.	G	GT	155.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.20;RPA=7,8;RU=T;ReadPosRankSum=0.248;SB=-2.302e+01;SOR=0.892;STR;VQSLOD=9.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,8:19:99:193,0,257
1	246797974	rs6680646	T	A	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.374;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.043;SB=-7.797e+01;SOR=0.069;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:241,0,292
1	246802757	rs114580913	G	A	69.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=-0.365;SB=-3.500e+01;SOR=0.283;VQSLOD=9.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:98:98,0,203
1	246802868	rs6659356	A	G	110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=0.002;SB=-7.300e+01;SOR=0.204;VQSLOD=7.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,6:13:99:139,0,220
1	246805433	.	TG	T	142.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.28;MQ0=0;MQRankSum=1.408;QD=11.89;RPA=2,1;RU=G;ReadPosRankSum=0.078;SB=-3.876e+01;SOR=0.293;STR;VQSLOD=1.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:14:99:180,0,131
1	246903654	rs3007322	G	C	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=7.371;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=0.814;SB=-6.829e-02;SOR=2.584;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:27:99:328,0,477
1	246922124	rs12135184	G	T	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.061;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-0.216;SB=0.00;SOR=0.616;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:349,0,404
1	246929483	rs12144408	A	G	1143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.523;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.989;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.648;SB=-2.540e+02;SOR=0.298;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,39:69:99:1172,0,843
1	246939610	rs66927148	A	ATATT	1696.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;DB;DP=80;ExcessHet=3.0103;FS=7.924;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=1.178;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.67;RPA=2,3;RU=TATT;ReadPosRankSum=-0.848;SB=-6.660e+02;SOR=1.096;STR;VQSLOD=0.335;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,31:80:99:1734,0,2262
1	246939856	rs3795465	G	A	1429.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.834;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.789;HaplotypeScore=3.1435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-0.300;SB=-6.460e+02;SOR=0.597;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,53:98:99:1458,0,1296
1	246939943	rs6685364	T	C	1647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=2.420;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-0.455;SB=-9.420e+02;SOR=0.976;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,62:114:99:1676,0,1475
1	246940179	rs3795464	G	A	1339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=5.042;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=1.032;SB=-7.330e+02;SOR=0.330;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,47:101:99:1368,0,1444
1	246940182	rs3795463	C	A	1346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.177;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=6.257;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=1.555;SB=-7.690e+02;SOR=0.325;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,47:104:99:1375,0,1596
1	246940442	rs3795462	T	C	356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.314;SB=-2.010e+02;SOR=0.722;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:385,0,550
1	246943547	rs41267531	A	C	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.320;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=0.258;SB=-1.765e+00;SOR=0.892;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,8:23:99:264,0,474
1	247109014	rs2642982	G	C	458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-1.123;SB=-6.400e+01;SOR=1.022;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:487,0,496
1	247109168	rs6426191	G	A	1164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-2.211;SB=-5.570e+02;SOR=0.924;VQSLOD=7.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1193,0,1373
1	247109267	rs2642983	A	C	1240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.786;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=2.761;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.913;SB=-6.200e+02;SOR=1.024;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,50:94:99:1269,0,974
1	247150740	rs3749427	T	C	1490.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-8.350e+02;SOR=1.007;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1519,108,0
1	247151557	rs2642992	A	G	966.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.53;SB=-2.011e+02;SOR=2.833;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:995,72,0
1	247162658	rs2642973	C	T	6126.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-2.645e+03;SOR=1.483;VQSLOD=3.61;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,200:200:99:6155,448,0
1	247202362	.	C	CTT	186.75	PASS	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.34;RPA=16,18;RU=T;SB=0.00;SOR=4.407;STR;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:10:23:224,23,0
1	247241850	rs41305955	G	C	646.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-1.991e+02;SOR=2.200;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:675,48,0
1	247242032	rs3806269	C	T	786.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-3.020e+02;SOR=1.697;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:60:815,60,0
1	247264726	rs138228553	AT	A	150.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=0.396;QD=11.59;RPA=11,10;RU=T;ReadPosRankSum=-0.301;SB=0.00;SOR=1.609;STR;VQSLOD=2.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,9:18:74:188,0,74
1	247267274	rs4925692	C	A	1579.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-5.590e+02;SOR=1.814;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1608,123,0
1	247267668	rs2270616	G	T	566.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.30;SB=-4.276e+01;SOR=4.174;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:595,45,0
1	247287260	rs3901383	A	G	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9851;MLEAC=1;MLEAF=0.500;MQ=59.05;MQ0=0;MQRankSum=1.590;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=1.947;SB=-1.000e+02;SOR=0.919;VQSLOD=2.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,11:26:99:305,0,451
1	247301828	rs79433085	G	A	166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-0.285;SB=0.00;SOR=0.399;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:195,0,284
1	247301944	rs75273862	C	T	636.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.815;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.071;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=0.996;SB=-1.800e+02;SOR=0.963;VQSLOD=7.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,24:70:99:665,0,1298
1	247301993	rs80103464	G	C	726.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.305;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=4.315;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=-1.308;SB=-4.820e+02;SOR=0.742;VQSLOD=7.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,34:84:99:755,0,1413
1	247320258	rs41304032	A	G	1028.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.764;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=5.372;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-0.902;SB=-5.100e+02;SOR=0.250;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,37:67:99:1057,0,846
1	247320868	rs11806327	G	A	403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.123;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.949;SB=-6.200e+01;SOR=1.022;VQSLOD=9.54;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,15:31:99:432,0,468
1	247322298	rs6675536	G	T	1308.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.71;SB=-8.780e+02;SOR=0.818;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:96:1337,96,0
1	247323195	rs4925786	T	C	1073.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.280;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1402;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=0.248;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-0.549;SB=-5.220e+02;SOR=0.621;VQSLOD=3.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,41:70:99:1102,0,707
1	247323260	rs9793102	C	A	447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.393;HaplotypeScore=7.3180;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=0.812;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=1.291;SB=-9.732e-01;SOR=1.578;VQSLOD=0.664;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,17:31:99:476,0,392
1	247323279	rs150260021	TTC	T	402.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=1.149;QD=25.13;ReadPosRankSum=2.145;SB=-4.276e+01;SOR=1.863;VQSLOD=1.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,14:18:11:439,0,11
1	247323290	rs75724934	T	G	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.5210;MLEAC=1;MLEAF=0.500;MQ=55.59;MQ0=0;MQRankSum=1.005;QD=6.20;ReadPosRankSum=1.108;SB=-1.765e+00;SOR=1.022;VQSLOD=1.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:99:115,0,310
1	247347715	rs6660243	C	G	96.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=-0.490;SB=-5.700e+01;SOR=0.368;VQSLOD=9.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:125,0,223
1	247347828	rs6660351	C	T	277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.030;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.419;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=1.632;SB=-1.540e+02;SOR=1.038;VQSLOD=7.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,13:30:99:306,0,483
1	247347971	rs6684181	G	A	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.96;ReadPosRankSum=-0.098;SB=-1.260e+02;SOR=0.435;VQSLOD=9.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,9:28:99:251,0,454
1	247348189	rs3738443	C	T	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=0.547;SB=-2.801e+01;SOR=1.609;VQSLOD=7.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:99:138,0,178
1	247348586	rs3820508	G	A	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.818;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.289;SB=-1.710e+02;SOR=0.473;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:281,0,277
1	247348621	rs3820509	G	C	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.306;SB=-6.500e+01;SOR=0.693;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:215,0,252
1	247365430	rs10754539	A	G	764.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.427;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=2.071;SB=-2.770e+02;SOR=0.920;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:55:99:793,0,767
1	247394015	rs140772189	AG	A	304.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;DB;DP=16;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=-0.667;SB=-1.610e+02;SOR=0.169;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:342,0,346
1	247419509	rs1778540	T	C	681.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.695;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.926;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=2.723;SB=-2.910e+02;SOR=0.297;VQSLOD=6.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,22:43:99:710,0,612
1	247419664	rs1778541	C	T	816.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.929;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.193;SB=-4.680e+02;SOR=0.855;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,31:72:99:845,0,1241
1	247485932	rs10924984	A	G	1038.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-2.880e+02;SOR=2.517;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:34:84:1067,84,0
1	247486421	rs6692645	G	C	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.992;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=1.266;SB=-2.310e+02;SOR=0.160;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,16:26:99:457,0,335
1	247486678	rs7540329	T	C	448.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.985;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.579;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.808;SB=-9.900e+01;SOR=1.179;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:477,0,525
1	247486736	rs6426239	C	T	102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=0.100;SB=-3.400e+01;SOR=0.693;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:131,0,155
1	247582063	rs73136263	G	T	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.91;ReadPosRankSum=1.126;SB=-1.765e+00;SOR=0.804;VQSLOD=8.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:118,0,283
1	247582465	rs199523445	TA	T	380.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-4.676e+01;SOR=3.767;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:418,39,0
1	247587477	rs3806268	G	A	1821.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=1.303;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.882;SB=-9.980e+02;SOR=0.851;VQSLOD=7.49;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,68:147:99:1850,0,2290
1	247587531	rs4925543	A	G	4282.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-2.548e+03;SOR=0.708;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4311,319,0
1	247589095	.	G	GA	122.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.22;RPA=10,11;RU=A;ReadPosRankSum=0.293;SB=-4.500e+01;SOR=0.693;STR;VQSLOD=8.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:99:160,0,212
1	247597365	rs10925022	G	A	1280.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-7.597e+01;SOR=4.977;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1309,102,0
1	247597656	rs3835304	TG	T	2836.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;RPA=4,3;RU=G;SB=-5.440e+02;SOR=2.864;STR;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:80:99:2874,223,0
1	247599232	rs10754557	G	A	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.203;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=0.647;SB=-1.765e+00;SOR=1.885;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:403,0,358
1	247614617	rs4925663	C	T	3484.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-1.892e+03;SOR=0.853;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:107:99:3513,268,0
1	247614693	rs6695302	C	T	4026.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.74;SB=-1.980e+03;SOR=0.963;VQSLOD=5.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,123:123:99:4055,307,0
1	247614896	rs11583410	A	C	1961.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.633;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=5.766;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-0.024;SB=-9.600e+02;SOR=1.028;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,68:119:99:1990,0,1541
1	247615261	rs35305980	GA	G	1813.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DB;DP=97;ExcessHet=3.0103;FS=8.226;MLEAC=1;MLEAF=0.500;MQ=60.11;MQ0=0;MQRankSum=1.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.89;RPA=2,1;RU=A;ReadPosRankSum=0.022;SB=-6.610e+02;SOR=1.286;STR;VQSLOD=0.276;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,49:97:99:1851,0,1872
1	247615470	rs4269805	T	C	378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-4.276e+01;SOR=3.258;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:407,30,0
1	247695427	rs34220133	C	G	3921.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-2.144e+03;SOR=0.899;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,115:116:99:3950,289,0
1	247695612	rs6657127	G	A	4067.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-1.744e+03;SOR=1.342;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4096,298,0
1	247695756	rs6697472	T	C	1717.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=-9.000e+02;SOR=1.278;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1746,132,0
1	247752019	rs1151687	G	C	3349.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-1.835e+03;SOR=0.888;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3378,244,0
1	247752650	rs35280339	AT	A	471.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.675;DB;DP=28;ExcessHet=3.0103;FS=6.383;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.88;RPA=10,9;RU=T;ReadPosRankSum=1.956;SB=-4.702e+01;SOR=4.003;STR;VQSLOD=4.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:2,23:28:13:509,13,0
1	247768736	rs71798723	AGTGAAAAATGAATAGTTTAGG	A	1821.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=0.00;SOR=4.615;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:10:27:1859,27,0
1	247769592	rs1151683	C	T	2700.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-1.566e+03;SOR=0.741;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2729,205,0
1	247835352	rs1151641	C	T	723.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-3.976e+01;SOR=4.615;VQSLOD=5.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:752,57,0
1	247835950	rs1151640	T	C	4303.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.11;SB=-2.092e+03;SOR=1.170;VQSLOD=3.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4332,313,0
1	247921100	rs1552812	T	G	2003.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-9.130e+02;SOR=1.071;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2032,153,0
1	247921238	rs41304161	G	A	972.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.646;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=7.277;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-0.707;SB=-5.020e+02;SOR=0.848;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,36:59:99:1001,0,676
1	247921352	rs1552813	C	T	1902.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-9.890e+02;SOR=0.914;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1931,144,0
1	247921717	rs10888359	C	A	694.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.74;SB=-1.205e+02;SOR=3.056;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:723,54,0
1	247978087	rs10888248	G	A	1611.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.4641;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-3.500e+02;SOR=2.833;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1640,123,0
1	247978319	rs6695283	A	G	3029.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-1.834e+03;SOR=0.737;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3058,223,0
1	247978541	rs35979231	AAGG	A	4536.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-1.921e+03;SOR=1.012;VQSLOD=6.72;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,77:81:99:4574,232,0
1	247978996	rs10888249	A	G	1512.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-5.260e+02;SOR=1.828;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1541,111,0
1	247990932	rs12125756	G	A	524.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-2.401e+02;SOR=1.371;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:42:553,42,0
1	248004614	rs6667389	G	A	2892.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-1.300e+03;SOR=1.329;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2921,217,0
1	248004687	rs10888255	C	G	3703.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-2.245e+03;SOR=0.831;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3732,271,0
1	248004775	rs10888256	C	T	3540.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-1.701e+03;SOR=1.219;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3569,268,0
1	248004848	rs4607924	G	C	2681.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-1.343e+03;SOR=1.151;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2710,196,0
1	248004877	rs10888257	C	T	2092.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-1.032e+03;SOR=1.057;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:63:99:2121,159,0
1	248004884	rs1339845	T	C	2126.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.87;SB=-1.133e+03;SOR=0.865;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2155,157,0
1	248005213	rs7522811	G	C	2406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-1.311e+03;SOR=1.079;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2435,175,0
1	248039451	rs3811444	C	T	3193.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-1.754e+03;SOR=0.780;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3222,241,0
1	248039713	rs3811445	A	G	1586.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-8.530e+02;SOR=0.919;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1615,123,0
1	248058755	rs1337876	A	G	494.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.61;SB=0.00;SOR=5.283;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:523,39,0
1	248058761	rs11204543	G	C	469.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-4.076e+01;SOR=3.767;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:498,36,0
1	248058797	rs1856248	T	G	710.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.64;SB=-8.297e+01;SOR=3.611;VQSLOD=2.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:739,54,0
1	248058845	rs4500353	A	C	1214.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-4.120e+02;SOR=2.012;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1243,90,0
1	248058879	rs6587387	A	T	1600.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-5.600e+02;SOR=1.814;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1629,117,0
1	248059476	rs12139390	A	C	3942.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-1.898e+03;SOR=1.135;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3971,295,0
1	248059779	.	G	GA	3013.73	PASS	AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.06;MQ0=0;QD=27.98;RPA=2,3;RU=A;SB=-1.392e+03;SOR=0.908;STR;VQSLOD=3.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:81:99:3051,241,0
1	248060029	rs10732831	A	G	744.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-2.031e+02;SOR=2.494;VQSLOD=6.54;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:57:773,57,0
1	248084222	rs12048237	T	C	1036.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.14;SB=-1.145e+02;SOR=3.841;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:78:1065,78,0
1	248084464	rs11204564	T	C	1086.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4148;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=2;POSITIVE_TRAIN_SITE;QD=24.70;SB=-3.800e+02;SOR=1.556;VQSLOD=4.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:84:1115,84,0
1	248085124	rs4590708	G	A	2039.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-7.870e+02;SOR=1.536;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2068,153,0
1	248112745	rs4925788	G	T	4075.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=5;POSITIVE_TRAIN_SITE;QD=30.42;SB=-1.837e+03;SOR=1.110;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4104,310,0
1	248112762	rs4925789	T	C	3362.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=5;POSITIVE_TRAIN_SITE;QD=29.76;SB=-1.730e+03;SOR=1.077;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3391,247,0
1	248112763	rs4925790	G	A	3191.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=5;POSITIVE_TRAIN_SITE;QD=28.50;SB=-1.677e+03;SOR=1.056;VQSLOD=5.99;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3220,244,0
1	248112771	rs4925791	C	T	3349.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=5;POSITIVE_TRAIN_SITE;QD=28.15;SB=-1.794e+03;SOR=1.054;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:120:99:3378,253,0
1	248112809	rs4925583	A	G	3192.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=2;POSITIVE_TRAIN_SITE;QD=30.41;SB=-1.473e+03;SOR=1.477;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3221,235,0
1	248112836	rs4925792	A	G	2986.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-1.120e+03;SOR=1.508;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:91:99:3015,226,0
1	248113026	rs10888281	T	A	2218.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-1.098e+03;SOR=0.990;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2247,169,0
1	248113040	rs10888282	A	G	2376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-1.263e+03;SOR=0.904;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2405,175,0
1	248113121	rs12030937	C	A	1876.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.830;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.148;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=-0.160;SB=-9.460e+02;SOR=0.379;VQSLOD=3.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1905,106,0
1	248113206	rs10888283	C	G	833.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-1.245e+02;SOR=3.611;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:862,66,0
1	248128929	rs6664332	G	A	2635.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=-1.473e+03;SOR=0.746;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2664,202,0
1	248129689	rs78182622	G	T	1136.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-4.176e+01;SOR=5.549;VQSLOD=5.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:93:1165,93,0
1	248138577	rs6689666	C	A	400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.05;SB=-2.401e+02;SOR=1.244;VQSLOD=4.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:30:429,30,0
1	248138588	rs6680172	G	A	395.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.38;SB=-2.401e+02;SOR=1.112;VQSLOD=4.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:424,30,0
1	248138642	rs6694546	A	G	444.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.80;SB=-2.850e+02;SOR=0.941;VQSLOD=4.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:473,36,0
1	248138848	rs12042554	G	C	1010.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.85;SB=-5.770e+02;SOR=0.760;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:75:1039,75,0
1	248247956	rs114544819	A	T	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.91;ReadPosRankSum=-0.149;SB=-1.620e+02;SOR=0.556;VQSLOD=8.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,15:38:99:367,0,647
1	248366702	rs4916112	G	A	2469.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.796;DB;DP=192;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-0.473;SB=-1.283e+03;SOR=0.710;VQSLOD=6.38;culprit=DP	GT:AD:DP:GQ:PL	0/1:93,99:192:99:2498,0,2583
1	248366792	rs12562957	T	C	2307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=7.679;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=1.150;SB=-1.383e+03;SOR=0.329;VQSLOD=4.67;culprit=DP	GT:AD:DP:GQ:PL	0/1:93,87:180:99:2336,0,2615
1	248367415	rs4916082	C	T	1082.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-7.397e+01;SOR=4.680;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:87:1111,87,0
1	248402758	rs6666148	C	T	1963.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-9.700e+02;SOR=1.143;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1992,147,0
1	248436611	rs10888338	G	A	731.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=8;POSITIVE_TRAIN_SITE;QD=20.33;SB=-3.690e+02;SOR=1.179;VQSLOD=3.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:60:760,60,0
1	248436616	rs71538179	A	G	749.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=7;POSITIVE_TRAIN_SITE;QD=20.83;SB=-4.340e+02;SOR=1.071;VQSLOD=3.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:60:778,60,0
1	248436972	rs112084843	A	G	1350.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=6;POSITIVE_TRAIN_SITE;QD=25.49;SB=-5.260e+02;SOR=1.659;VQSLOD=4.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1379,108,0
1	248437210	rs28407436	T	C	1140.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-3.600e+02;SOR=2.115;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1169,84,0
1	248437247	rs144591821	GCCCTAA	G	1568.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-9.676e+01;SOR=4.294;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:21:51:1606,51,0
1	248457979	rs6667171	C	A	4469.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=-2.894e+03;SOR=0.814;VQSLOD=4.36;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4498,319,0
1	248457993	rs11204625	C	G	4460.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-2.498e+03;SOR=0.966;VQSLOD=5.64;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4489,325,0
1	248458717	rs12745228	C	G	911.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=25.33;SB=-3.990e+02;SOR=1.739;VQSLOD=3.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:75:940,75,0
1	248458736	rs28409263	A	G	1340.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.93;SB=-5.890e+02;SOR=1.562;VQSLOD=4.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1369,108,0
1	248458760	rs12135684	C	A	1640.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-8.330e+02;SOR=1.159;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1669,123,0
1	248458875	rs11339452	CT	C	2642.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-1.137e+03;SOR=1.160;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:61:99:2680,181,0
1	248458974	rs11204626	T	A	818.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.12;SB=-2.331e+02;SOR=2.124;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:847,63,0
1	248486895	rs4244184	G	T	1992.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.94;SB=-2.401e+02;SOR=3.912;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2021,147,0
1	248486913	rs4244185	A	G	2191.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-3.920e+02;SOR=3.393;VQSLOD=6.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2220,178,0
1	248487016	rs4451579	C	T	4653.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-2.225e+03;SOR=1.163;VQSLOD=6.12;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4682,346,0
1	248487338	rs4916130	C	A	5372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9148;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-3.044e+03;SOR=0.770;VQSLOD=3.38;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,160:160:99:5401,406,0
1	248487638	rs7555310	A	G	2779.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-1.265e+03;SOR=1.207;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2808,205,0
1	248487768	rs7555424	A	G	2121.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=-1.226e+03;SOR=0.723;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2150,157,0
1	248487907	.	T	G	635.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.934;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.79;ReadPosRankSum=-0.219;SB=-1.920e+02;SOR=1.428;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:664,0,509
1	248512498	rs28448343	A	G	3792.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-1.881e+03;SOR=1.010;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3821,289,0
1	248524799	rs71810965	AAC	A	1315.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.90;RPA=9,8;RU=AC;SB=-8.697e+01;SOR=4.743;STR;VQSLOD=6.45;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,33:35:99:1353,99,0
1	248525328	rs370409078	C	CTA	7452.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=31.99;SB=-3.436e+03;SOR=0.785;VQSLOD=4.09;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,134:135:99:7490,403,0
1	248525330	rs56721857	A	G	4071.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=4;QD=28.08;SB=-2.134e+03;SOR=0.736;VQSLOD=2.73;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4100,340,0
1	248525647	.	C	A	2765.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.851;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6688;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=2.039;QD=31.08;ReadPosRankSum=0.448;SB=-1.301e+03;SOR=0.481;VQSLOD=1.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2794,208,0
1	248525650	rs28602650	C	T	2662.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6688;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-1.347e+03;SOR=1.259;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2691,202,0
1	248525657	rs28718027	G	A	2833.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8133;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-1.218e+03;SOR=1.356;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2862,208,0
1	248525780	rs28698997	C	T	3021.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-1.277e+03;SOR=1.414;VQSLOD=6.66;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3050,223,0
1	248550894	rs7418152	T	G	1949.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-8.020e+02;SOR=1.685;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1978,141,0
1	248550970	rs7417616	A	G	2723.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-1.629e+03;SOR=0.887;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2752,208,0
1	248550976	rs6587467	T	G	2869.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.632e+03;SOR=0.812;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2898,211,0
1	248551203	rs6700947	T	C	1373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-7.100e+02;SOR=1.055;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1402,108,0
1	248551560	rs954474	C	T	5133.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.30;SB=-3.225e+03;SOR=0.768;VQSLOD=5.08;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,164:164:99:5162,373,0
1	248551636	rs954475	T	G	4942.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-2.624e+03;SOR=1.085;VQSLOD=6.18;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4971,355,0
1	248551955	rs28437787	C	A	316.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-4.176e+01;SOR=3.258;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:345,27,0
1	248569369	rs28599722	A	G	728.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.178;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.241;SB=-3.710e+02;SOR=0.460;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,30:63:99:757,0,845
1	248570440	rs6695780	G	A	2376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.01;SB=-9.610e+02;SOR=1.483;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2405,175,0
1	248604452	rs78822516	A	G	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.436;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.03;MQ0=1;MQRankSum=-1.813;QD=18.31;ReadPosRankSum=-0.254;SB=-3.500e+01;SOR=0.693;VQSLOD=2.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,13:22:99:431,0,175
1	248604454	rs113331655	CAT	C	274.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.48;MQ0=0;MQRankSum=2.575;POSITIVE_TRAIN_SITE;QD=14.46;RPA=2,1;RU=AT;ReadPosRankSum=0.085;SB=-4.500e+01;SOR=0.648;STR;VQSLOD=3.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,7:19:99:312,0,602
1	248604465	rs76925977	C	T	723.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.4464;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=1;QD=30.16;SB=-1.921e+02;SOR=2.030;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:752,57,0
1	248604542	rs61834485	C	T	977.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=1;POSITIVE_TRAIN_SITE;QD=27.16;SB=-5.090e+02;SOR=0.749;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:78:1006,78,0
1	248637685	rs201431222	T	C	744.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.749;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8383;MLEAC=1;MLEAF=0.500;MQ=43.13;MQ0=0;MQRankSum=-0.351;QD=15.52;ReadPosRankSum=-0.836;SB=-2.602e+01;SOR=0.780;VQSLOD=2.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,25:48:99:773,0,689
1	248685253	rs9727474	T	C	3279.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-1.912e+03;SOR=0.815;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3308,253,0
1	248789454	rs1892441	G	C	3388.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-1.119e+03;SOR=2.027;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3417,250,0
1	248789504	rs1892442	T	C	4503.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-1.851e+03;SOR=1.385;VQSLOD=5.51;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4532,340,0
1	248790075	rs1892443	A	G	4052.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-2.300e+03;SOR=0.818;VQSLOD=4.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4081,304,0
1	248814126	rs28418327	G	A	1768.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.80;SB=-7.280e+02;SOR=1.793;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1797,144,0
1	248844959	rs55871516	T	C	1578.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.169;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=1.650;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-1.101;SB=-7.540e+02;SOR=0.888;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,51:95:99:1607,0,1146
1	248845097	rs2000390	C	T	2002.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.679;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.585;HaplotypeScore=2.9295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-0.369;SB=-1.029e+03;SOR=0.818;VQSLOD=7.17;culprit=DP	GT:AD:DP:GQ:PL	0/1:84,80:164:99:2031,0,2381
1	248845356	rs41311583	G	T	773.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.189;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.894;HaplotypeScore=3.4090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=0.000;SB=-3.450e+02;SOR=0.859;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,30:79:99:802,0,1358
1	248845411	rs11485825	G	A	1043.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.424;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.005;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=-0.078;SB=-5.950e+02;SOR=0.859;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,37:60:99:1072,0,553
1	248845458	rs4509608	C	T	788.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=5.341;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.224;SB=-3.930e+02;SOR=0.877;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,31:57:99:817,0,724
1	248845471	rs4575113	T	C	1719.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-1.027e+03;SOR=0.804;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1748,132,0
1	248845499	rs4462184	A	G	1526.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-8.810e+02;SOR=0.735;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1555,117,0
1	249107414	rs11205412	T	C	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=1.021;SB=-1.100e+02;SOR=0.593;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:319,0,150
1	249108640	rs12031808	C	T	783.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.251;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.898;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-0.386;SB=-3.000e+02;SOR=1.314;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:56:99:812,0,598
1	249109034	rs10888590	A	G	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.891;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=0.599;SB=-9.400e+01;SOR=1.276;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:328,0,213
1	249120684	rs11205415	T	G	1322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.911;HaplotypeScore=6.6928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=0.381;SB=-5.580e+02;SOR=0.556;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,47:80:99:1351,0,846
1	249120794	rs11205416	G	A	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.671;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=1.136;SB=0.00;SOR=2.093;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,15:20:99:519,0,142
1	249141782	rs12038641	A	T	1396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.242;SB=-4.940e+02;SOR=0.682;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,44:76:99:1425,0,921
1	249145072	rs66864206	C	CA	883.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.176;DB;DP=39;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=-1.380;SB=-2.090e+02;SOR=0.997;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,21:39:99:921,0,653
1	249149486	rs12135449	T	C	606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.721;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.063;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=-0.265;SB=-1.420e+02;SOR=1.445;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,21:28:99:635,0,206
2	45895	rs4241318	A	G	901.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-4.060e+02;SOR=1.051;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:930,69,0
2	224919	rs2290911	A	G	963.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.567;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.814;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-2.387;SB=-7.050e+02;SOR=0.570;VQSLOD=7.44;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:43,42:85:99:992,0,1089
2	224970	rs2290912	C	T	833.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.893;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=4.519;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=2.098;SB=-3.460e+02;SOR=1.272;VQSLOD=6.87;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:44,35:79:99:862,0,1041
2	230912	rs2306060	A	C	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.214;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-1.292;SB=-7.300e+01;SOR=0.437;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:326,0,269
2	242732	rs35468551	T	TAAC	743.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;DB;DP=28;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.55;RPA=6,7;RU=AAC;ReadPosRankSum=-0.593;SB=-1.480e+02;SOR=0.340;STR;VQSLOD=4.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:28:99:781,0,489
2	242793	rs62114506	G	C	683.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=1.309;SB=-2.910e+02;SOR=0.334;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:712,0,600
2	243567	.	T	TA	639.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;DP=46;ExcessHet=3.0103;FS=6.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;RPA=10,11;RU=A;ReadPosRankSum=1.832;SB=-3.310e+02;SOR=0.191;STR;VQSLOD=6.99;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,27:46:99:677,0,331
2	262553	rs7596678	T	C	570.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.823;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.606;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.844;SB=-1.330e+02;SOR=0.380;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,20:42:99:599,0,675
2	264019	rs7595075	C	A	356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.063;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=-0.911;SB=-3.300e+01;SOR=1.061;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:385,0,238
2	264895	rs4854300	G	C	1544.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-4.900e+02;SOR=2.110;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1573,114,0
2	271797	rs59937473	G	A	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.626;SB=-1.765e+00;SOR=2.179;VQSLOD=6.22;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:173,0,138
2	271998	.	CA	C	661.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DP=85;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.17;RPA=16,15;RU=A;ReadPosRankSum=0.477;SB=-2.050e+02;SOR=0.538;STR;VQSLOD=5.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,45:85:99:699,0,699
2	272203	rs11553746	C	T	2310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.902;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=0.535;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=1.039;SB=-1.364e+03;SOR=0.771;VQSLOD=5.82;culprit=DP	GT:AD:DP:GQ:PL	0/1:101,88:189:99:2339,0,2923
2	272840	rs12714401	G	A	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.963;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-0.571;SB=-6.500e+01;SOR=0.826;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:503,0,712
2	272926	rs12714402	A	G	1086.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.923;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-2.059;SB=-7.000e+02;SOR=0.412;VQSLOD=7.86;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1115,0,1132
2	273070	rs12714403	A	G	1045.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.842;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-0.142;SB=-5.310e+02;SOR=0.569;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,42:88:99:1074,0,1333
2	277003	rs79716074	A	G	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.576;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-0.794;SB=-1.765e+00;SOR=1.414;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:415,0,548
2	283231	.	A	AT	274.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DP=33;ExcessHet=3.0103;FS=2.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;RPA=7,8;RU=T;ReadPosRankSum=0.040;SB=-2.004e+01;SOR=1.292;STR;VQSLOD=7.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,13:33:99:312,0,413
2	676177	rs2293083	C	G	1383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.016;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.569;SB=-6.920e+02;SOR=0.633;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,54:114:99:1412,0,1561
2	676457	rs2293082	G	C	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.500;HaplotypeScore=8.0243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-0.577;SB=-1.120e+02;SOR=1.194;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:444,0,468
2	676478	rs71693768	T	TGTAA	1314.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=-0.151;SB=-4.780e+02;SOR=0.569;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,20:42:99:1352,0,1393
2	677213	rs3749138	G	A	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=1.587;SB=-4.276e+01;SOR=0.169;VQSLOD=9.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,6:12:99:130,0,191
2	677559	.	G	C	547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.054;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.26;ReadPosRankSum=1.227;SB=-3.032e+02;SOR=0.230;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,23:30:99:576,0,221
2	905844	rs6711032	A	C	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7880;MLEAC=1;MLEAF=0.500;MQ=43.92;MQ0=1;MQRankSum=-0.603;QD=5.23;ReadPosRankSum=-1.745;SB=-6.700e+01;SOR=1.492;VQSLOD=1.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,8:21:99:138,0,165
2	905889	rs62103945	C	G	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2693;MLEAC=1;MLEAF=0.500;MQ=51.28;MQ0=0;MQRankSum=2.624;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-2.609;SB=-1.790e+02;SOR=0.569;VQSLOD=2.44;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,11:18:90:232,0,90
2	1079130	rs4971429	G	A	772.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-2.690e+02;SOR=1.893;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:801,60,0
2	1079132	rs4971430	G	A	827.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-2.800e+02;SOR=1.981;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:856,63,0
2	1079143	rs4971431	A	G	1012.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-3.260e+02;SOR=2.019;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1041,75,0
2	1079320	rs4971432	C	T	1267.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-4.900e+02;SOR=1.775;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:93:1296,93,0
2	1168781	rs28505970	C	A	4734.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.18;SB=-2.265e+03;SOR=1.320;VQSLOD=3.74;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,168:169:99:4763,352,0
2	1204796	rs6751090	C	T	1214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.064;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.761;HaplotypeScore=2.6975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-0.719;SB=-5.750e+02;SOR=0.590;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,47:103:99:1243,0,1572
2	1205003	rs28495529	G	A	1269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.440;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.230;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=-0.247;SB=-3.150e+02;SOR=0.426;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,43:70:99:1298,0,809
2	1241592	rs146197111	C	T	765.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-2.001e+02;SOR=2.303;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:794,60,0
2	1241883	rs35402865	G	A	900.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.058;HaplotypeScore=3.5644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-1.145;SB=-2.710e+02;SOR=0.512;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,34:74:99:929,0,1204
2	1241944	rs28502413	G	C	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.927;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.974;SB=-9.732e-01;SOR=1.739;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:32:99:387,0,611
2	1243312	rs28760535	T	C	408.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.654;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-0.373;SB=-6.700e+01;SOR=0.582;VQSLOD=9.04;culprit=SOR	GT:AD:DP:GQ:PL	0/1:23,15:38:99:437,0,705
2	1243318	rs28436921	C	T	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.476;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=-1.169;SB=-1.270e+02;SOR=0.283;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,18:41:99:456,0,722
2	1243608	rs28570180	A	C	913.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.452;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.137;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=1.945;SB=-4.630e+02;SOR=0.420;VQSLOD=7.34;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:34,35:69:99:942,0,842
2	1243645	rs28411047	T	G	699.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.167;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.186;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-0.621;SB=-2.790e+02;SOR=0.275;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,26:43:99:728,0,467
2	1250878	rs28622255	T	C	408.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.784;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=0.991;SB=-2.100e+02;SOR=0.412;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:437,0,301
2	1251087	rs66853772	A	AAAGGTT	3049.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.390;DB;DP=67;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=-0.782;SB=-1.505e+03;SOR=0.410;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,37:67:99:3087,0,2565
2	1251088	rs55953201	C	T	906.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.483;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.410;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.620;SB=-5.110e+02;SOR=0.384;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,32:62:99:935,0,831
2	1251344	rs28694128	G	A	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.542;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=0.705;SB=-3.477e+01;SOR=0.481;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:344,0,193
2	1263005	rs9330340	A	G	464.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=-1.532;SB=-3.301e+01;SOR=1.022;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,16:28:99:493,0,361
2	1263356	rs62106570	T	C	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.40;ReadPosRankSum=-0.706;SB=0.00;SOR=0.223;VQSLOD=9.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:22:99:169,0,520
2	1270968	rs35492456	G	A	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.56;ReadPosRankSum=-1.509;SB=0.00;SOR=0.269;VQSLOD=9.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:119,0,257
2	1271230	rs13023962	A	G	1256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=4.586;HaplotypeScore=2.8314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.291;SB=-7.070e+02;SOR=0.388;VQSLOD=7.12;culprit=DP	GT:AD:DP:GQ:PL	0/1:67,55:122:99:1285,0,1860
2	1271426	rs36187122	C	T	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=-0.074;SB=0.00;SOR=1.022;VQSLOD=10.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:238,0,147
2	1320143	rs4927635	C	T	1313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=6.052;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.450;SB=-6.820e+02;SOR=0.790;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,52:105:99:1342,0,1337
2	1320300	rs35466197	A	G	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.176;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.515;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.418;SB=-7.300e+01;SOR=0.191;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:375,0,515
2	1320304	.	C	A	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.524;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.551;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.91;ReadPosRankSum=0.545;SB=-7.100e+01;SOR=0.180;VQSLOD=6.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,11:26:99:286,0,454
2	1320305	.	G	C	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.976;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.481;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.31;ReadPosRankSum=0.247;SB=-7.201e+01;SOR=0.204;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:336,0,470
2	1418192	rs9678281	C	G	848.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.073;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-0.245;SB=-4.260e+02;SOR=0.306;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,31:54:99:877,0,655
2	1426621	rs2276702	A	G	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.22;ReadPosRankSum=0.665;SB=-9.732e-01;SOR=1.022;VQSLOD=8.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,7:26:99:190,0,560
2	1426787	rs2276701	G	A	2023.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=1.340;HaplotypeScore=8.9750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-0.950;SB=-7.640e+02;SOR=0.820;VQSLOD=7.66;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,75:147:99:2052,0,1842
2	1437163	rs1473936	A	C	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.285;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-1.227;SB=-1.060e+02;SOR=0.770;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:452,0,442
2	1437410	rs4927578	C	T	224.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.456;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.075;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-0.158;SB=-4.076e+01;SOR=0.086;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,9:23:99:253,0,447
2	1440299	rs28909386	A	G	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.834;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.086;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-1.774;SB=-2.402e+01;SOR=1.270;VQSLOD=7.14;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,8:20:99:240,0,326
2	1442476	rs1969248	T	C	120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.75;ReadPosRankSum=0.560;SB=-2.501e+01;SOR=0.859;VQSLOD=8.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:149,0,406
2	1442551	rs3036132	ATTTT	A	556.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=1.003;QD=13.92;RPA=17,13;RU=T;ReadPosRankSum=0.956;SB=-2.590e+02;SOR=0.673;STR;VQSLOD=2.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,13:32:99:594,0,699
2	1457364	rs2070881	A	G	1366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.17;SB=-3.220e+02;SOR=2.670;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1395,105,0
2	1457467	.	G	A	846.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-1.072;SB=-4.260e+02;SOR=0.716;VQSLOD=6.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:71,35:107:99:875,0,1970
2	1459806	rs4927610	A	G	482.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-1.603e+02;SOR=2.179;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:511,39,0
2	1460004	rs4927611	G	T	867.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.766;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.872;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.271;SB=-5.110e+02;SOR=0.811;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,35:72:99:896,0,1041
2	1460140	rs4927612	A	G	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.985;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=7.071;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-0.775;SB=-3.480e+02;SOR=0.165;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,23:41:99:680,0,511
2	1460280	rs28910572	G	T	69.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=0.723;SB=-3.300e+01;SOR=0.283;VQSLOD=9.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:98:98,0,218
2	1481155	rs2280132	G	T	932.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.824;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.231;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=0.300;SB=-3.420e+02;SOR=1.014;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,34:51:99:961,0,452
2	1481231	rs2175977	G	C	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=0.640;SB=-1.820e+02;SOR=0.631;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,19:28:99:636,0,284
2	1488668	rs6715129	T	C	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.759;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.976;SB=0.00;SOR=0.425;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:224,0,331
2	1491497	rs6727192	T	C	911.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.257;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.133;HaplotypeScore=4.0509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=1.502;SB=-9.901e+01;SOR=0.209;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,30:59:99:940,0,919
2	1497442	rs9679267	A	G	513.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.802;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.427;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.315;SB=-8.700e+01;SOR=1.002;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,20:50:99:542,0,831
2	1497803	.	C	T	722.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;DP=76;Dels=0.00;ExcessHet=3.0103;FS=2.045;HaplotypeScore=2.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.555;SB=-2.740e+02;SOR=0.993;VQSLOD=6.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,31:76:99:751,0,1122
2	1499728	rs2276704	C	T	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.857;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=4.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-0.682;SB=-3.976e+01;SOR=0.078;VQSLOD=7.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,12:32:99:347,0,718
2	1499899	rs732608	C	T	2047.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.633;DB;DP=183;Dels=0.00;ExcessHet=3.0103;FS=2.573;HaplotypeScore=2.6986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-1.178;SB=-1.477e+03;SOR=0.502;VQSLOD=5.97;culprit=DP	GT:AD:DP:GQ:PL	0/1:93,90:183:99:2076,0,2574
2	1499927	rs732609	A	C	2322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.807;DB;DP=199;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-0.729;SB=-1.457e+03;SOR=0.678;VQSLOD=6.20;culprit=DP	GT:AD:DP:GQ:PL	0/1:101,98:199:99:2351,0,2569
2	1500665	rs867983	C	T	381.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.274;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=5.946;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.023;SB=-2.170e+02;SOR=0.155;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:410,0,413
2	1520676	rs1126799	T	C	903.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.360;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=0.733;SB=-1.950e+02;SOR=0.520;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,31:51:99:932,0,601
2	1544617	rs12615819	G	A	1294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=0.759;SB=-6.660e+02;SOR=0.656;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,46:71:99:1323,0,640
2	1546327	rs1042589	C	G	919.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=1.920;SB=-4.850e+02;SOR=0.723;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,35:78:99:948,0,1061
2	1546361	rs28915689	G	T	929.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.829;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.994;HaplotypeScore=1.9290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.339;SB=-3.790e+02;SOR=0.997;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,34:72:99:958,0,1035
2	1639060	rs2241458	A	G	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.516;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=1.461;POSITIVE_TRAIN_SITE;QD=7.73;ReadPosRankSum=1.551;SB=-2.801e+01;SOR=0.922;VQSLOD=2.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:23:99:206,0,453
2	1639122	rs2241457	T	C	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.141;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-0.832;SB=-2.380e+02;SOR=0.513;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,21:48:99:534,0,848
2	1642537	rs6729142	T	C	1675.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-3.876e+01;SOR=6.138;VQSLOD=4.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1704,126,0
2	1642539	rs6742040	C	T	1517.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-7.597e+01;SOR=5.421;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1546,120,0
2	1642545	rs6742039	C	G	1707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-1.593e+02;SOR=4.534;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1736,141,0
2	1647171	rs6730800	T	C	3412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-1.458e+03;SOR=1.652;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3441,250,0
2	1651842	rs11685976	C	A	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=7.090;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.70;ReadPosRankSum=-2.221;SB=-8.200e+01;SOR=1.863;VQSLOD=5.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,16:44:99:411,0,743
2	1652660	rs3811613	G	A	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.849;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.662;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-0.533;SB=-1.185e+02;SOR=0.048;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:338,0,266
2	1652822	rs1863135	T	G	851.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-3.300e+02;SOR=1.697;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:69:880,69,0
2	1664654	rs17841813	A	G	3271.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-1.015e+03;SOR=2.258;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3300,256,0
2	1667267	rs2241455	C	G	1450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=-2.471e+02;SOR=3.258;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1479,108,0
2	1667310	rs12475392	G	A	2471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-9.450e+02;SOR=1.739;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2500,184,0
2	1842892	rs111984953	G	A	150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.734;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=-0.949;SB=0.00;SOR=0.197;VQSLOD=9.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:99:179,0,509
2	1842968	rs6728368	T	C	849.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.951;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.819;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-1.156;SB=-1.650e+02;SOR=1.258;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:878,0,719
2	1843285	rs10196494	A	G	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.820;SB=0.00;SOR=0.976;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:244,0,196
2	1844458	rs4381806	T	C	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=14.880;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-1.063;SB=-1.580e+02;SOR=0.012;VQSLOD=4.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:20:99:276,0,345
2	1890070	rs4241294	C	T	499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-7.997e+01;SOR=3.258;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:528,39,0
2	1926437	rs1529667	G	T	3042.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-1.801e+03;SOR=0.823;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3071,226,0
2	1926617	rs2241686	G	A	1519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.697;HaplotypeScore=1.8773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-0.892;SB=-8.560e+02;SOR=0.602;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,61:118:99:1548,0,1479
2	1946646	rs7355555	A	C	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.620;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=1.990;SB=-2.400e+02;SOR=0.818;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:429,0,430
2	1946914	rs3748988	A	G	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.887;HaplotypeScore=3.3854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-1.003;SB=-1.321e+01;SOR=2.303;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:230,0,281
2	1983374	rs2304008	A	C	1127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.865;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.783;SB=-6.040e+02;SOR=0.616;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,41:84:99:1156,0,1169
2	1983619	rs7561518	A	G	677.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-2.032;SB=-8.500e+01;SOR=1.005;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,22:44:99:706,0,596
2	3193040	rs17682	G	A	2860.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-9.510e+02;SOR=2.033;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2889,217,0
2	3196040	rs2242084	A	G	763.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-8.097e+01;SOR=3.912;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:792,60,0
2	3212481	rs17327576	C	T	1263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.966;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=-0.167;SB=-7.020e+02;SOR=0.677;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:75,51:126:99:1292,0,2159
2	3212704	rs7595702	C	A	1589.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-6.250e+02;SOR=1.656;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1618,120,0
2	3212817	rs12467123	C	T	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.772;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.36;ReadPosRankSum=2.118;SB=-3.200e+01;SOR=0.693;VQSLOD=8.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:162,0,289
2	3217794	rs10865535	T	C	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=0.00;SOR=4.804;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
2	3217908	rs11682452	G	C	1267.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-6.730e+02;SOR=1.179;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:45:93:1296,93,0
2	3277884	rs4854162	A	G	369.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-2.041e+02;SOR=1.022;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:398,30,0
2	3322555	rs62121538	T	C	364.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.169;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.80;ReadPosRankSum=0.425;SB=-4.276e+01;SOR=0.892;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,12:16:99:393,0,120
2	3322797	rs12618407	C	A	418.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=2.618;SB=-2.500e+02;SOR=0.941;VQSLOD=8.69;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,16:22:99:447,0,114
2	3342009	rs3811617	T	C	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=-1.350;SB=0.00;SOR=1.112;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:279,0,193
2	3356850	rs12479261	T	C	462.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=-0.578;SB=0.00;SOR=1.721;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,14:20:99:491,0,169
2	3356953	rs2875394	A	T	2548.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-9.430e+02;SOR=1.939;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2577,193,0
2	3356995	rs62119517	G	A	1349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=4.375;HaplotypeScore=2.7877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-1.707;SB=-9.170e+02;SOR=0.409;VQSLOD=7.01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:63,58:121:99:1378,0,1515
2	3358458	rs146001084	ATTATGAAGTTAGAT	A	7079.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-1.701e+03;SOR=2.409;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:60:99:7117,132,0
2	3392075	rs10865541	T	C	2497.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-1.402e+03;SOR=0.976;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2526,181,0
2	3392295	rs11686212	A	G	5199.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-3.170e+03;SOR=0.730;VQSLOD=4.56;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5228,382,0
2	3392513	rs12999423	T	C	4196.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-2.139e+03;SOR=1.064;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4225,304,0
2	3392514	rs12999424	T	A	3829.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-2.049e+03;SOR=1.028;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3858,286,0
2	3393288	rs4476382	A	G	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=0.00;SOR=5.784;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:628,51,0
2	3393289	rs4318418	A	C	665.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=0.00;SOR=5.784;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:694,51,0
2	3425514	rs7558487	G	C	2347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-1.419e+03;SOR=0.747;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2376,172,0
2	3425948	rs10206964	T	C	1166.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-3.230e+02;SOR=2.432;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1195,93,0
2	3428508	rs10166880	T	G	1619.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-2.061e+02;SOR=3.816;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1648,120,0
2	3469278	rs4971513	C	G	1165.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-4.340e+02;SOR=1.863;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1194,93,0
2	3469463	rs4971514	G	C	2338.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-1.307e+03;SOR=0.836;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2367,172,0
2	3469702	rs4514905	A	G	608.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-2.161e+02;SOR=1.828;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:637,45,0
2	3469708	rs4246575	A	G	561.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-1.791e+02;SOR=1.981;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:590,42,0
2	3470115	rs7593516	T	C	1760.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=1.296;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-0.433;SB=-9.170e+02;SOR=0.553;VQSLOD=6.68;culprit=DP	GT:AD:DP:GQ:PL	0/1:83,71:154:99:1789,0,2067
2	3470124	rs7574517	G	A	1784.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.781;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-1.189;SB=-1.073e+03;SOR=0.684;VQSLOD=7.45;culprit=DP	GT:AD:DP:GQ:PL	0/1:84,72:156:99:1813,0,2045
2	3470186	rs11691759	G	C	1735.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.948;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.596;HaplotypeScore=2.5986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-0.132;SB=-9.690e+02;SOR=0.631;VQSLOD=6.48;culprit=DP	GT:AD:DP:GQ:PL	0/1:92,66:159:99:1764,0,2420
2	3470254	rs11677515	T	G	1385.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.858;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=1.794;SB=-4.130e+02;SOR=0.781;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,49:106:99:1414,0,1477
2	3481637	rs4535074	T	C	1257.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-7.280e+02;SOR=0.693;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1286,96,0
2	3481659	rs4321399	G	A	1277.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-7.490e+02;SOR=0.941;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:96:1306,96,0
2	3481716	rs4535075	T	C	1026.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-5.650e+02;SOR=1.085;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1055,75,0
2	3482722	rs13003061	C	T	1250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.130;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.732;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-0.615;SB=-6.070e+02;SOR=0.852;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,54:108:99:1279,0,1457
2	3482796	rs11890651	T	G	922.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.003;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=-1.432;SB=-3.980e+02;SOR=0.481;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,33:63:99:951,0,848
2	3482912	rs13431788	G	A	525.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.626;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.367;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=1.415;SB=-2.660e+02;SOR=0.473;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:554,0,433
2	3483181	rs13986	C	T	1049.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.658;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=1.235;SB=-3.930e+02;SOR=0.775;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,40:87:99:1078,0,1233
2	3483205	rs6767	C	T	2731.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4526;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-1.109e+03;SOR=1.609;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2760,208,0
2	3483390	rs7569694	T	G	1057.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-4.040e+02;SOR=1.819;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1086,78,0
2	3488502	rs9752130	A	G	2199.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-1.266e+03;SOR=0.992;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2228,169,0
2	3502909	rs33972841	A	ACTT	660.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.813;DB;DP=39;ExcessHet=3.0103;FS=5.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=0.220;SB=-9.700e+01;SOR=1.739;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,14:39:99:698,0,1548
2	3502910	rs58219575	G	T	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.294;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.552;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=0.878;SB=-4.900e+01;SOR=1.609;VQSLOD=6.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,13:38:99:380,0,736
2	3504290	rs6146601	GTGTACCTGCCGCCGCA	G	2080.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DB;DP=29;ExcessHet=3.0103;FS=3.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.643;SB=-9.732e-01;SOR=1.938;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,12:29:99:2118,0,2991
2	3504687	rs9950	A	G	1659.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=1.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=0.482;SB=-9.940e+02;SOR=0.854;VQSLOD=7.42;culprit=DP	GT:AD:DP:GQ:PL	0/1:82,65:147:99:1688,0,2104
2	3504819	rs34240449	A	G	928.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.390;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=7.973;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.32;MQ0=0;MQRankSum=1.557;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.321;SB=-1.370e+02;SOR=1.868;VQSLOD=0.132;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,31:67:99:957,0,918
2	3504893	.	G	GA	357.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;DP=34;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=1.675;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.18;RPA=3,4;RU=A;ReadPosRankSum=-0.817;SB=-9.732e-01;SOR=2.080;STR;VQSLOD=0.323;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,14:34:99:395,0,529
2	3518643	rs7566663	T	C	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.872;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=0.818;SB=-9.732e-01;SOR=1.651;VQSLOD=7.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,12:32:99:336,0,612
2	3579760	rs1071625	T	C	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.354;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.830;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=1.658;SB=-1.240e+02;SOR=0.273;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:465,0,484
2	3595834	rs13002108	C	A	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=-0.159;SB=0.00;SOR=1.022;VQSLOD=10.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:230,0,158
2	3597974	rs10186193	T	C	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.023;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-0.495;SB=-6.200e+01;SOR=0.914;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:380,0,276
2	3599700	rs7563960	G	T	795.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-4.000e+02;SOR=1.136;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:824,60,0
2	3627648	rs7576238	G	C	857.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.987;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=9.862;HaplotypeScore=4.3134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=1.570;SB=-3.710e+02;SOR=1.145;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,32:75:99:886,0,1208
2	3652616	rs3769507	G	C	1177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=2.858;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.138;SB=-6.600e+02;SOR=1.027;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,46:88:99:1206,0,1078
2	3653576	rs7604806	A	G	569.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.729;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.303;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=0.549;SB=-5.150e-01;SOR=2.833;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:598,0,562
2	3653844	rs3739147	T	C	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.199;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-1.470;SB=-3.400e+01;SOR=0.495;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:240,0,312
2	3660752	rs3811531	T	C	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.692;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=-0.413;SB=-7.497e+01;SOR=0.324;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,14:20:99:463,0,190
2	3665342	rs2312925	T	C	489.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.798;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.652;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.907;SB=-3.250e+02;SOR=0.376;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:518,0,492
2	3665445	rs7576886	A	C	153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.398;SB=0.00;SOR=0.307;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:90:182,0,90
2	3685046	rs3811528	T	C	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.531;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.571;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-1.070;SB=-9.100e+01;SOR=1.259;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:593,0,626
2	3685074	rs3811527	A	G	666.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.068;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.664;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-0.107;SB=-1.540e+02;SOR=1.199;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,25:56:99:695,0,846
2	3718646	rs60644898	G	A	1599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=-2.301e+02;SOR=3.564;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1628,123,0
2	3718655	rs59726279	A	G	1659.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-5.240e+02;SOR=2.303;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1688,132,0
2	3718692	rs13409104	C	T	2237.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.444;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.69;ReadPosRankSum=-0.113;SB=-1.004e+03;SOR=0.638;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,76:78:99:2266,166,0
2	3718985	rs34086816	A	G	737.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-6.797e+01;SOR=3.816;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:766,57,0
2	3721632	.	G	A	607.77	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=73.4546;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.39;SB=-7.797e+01;SOR=3.716;VQSLOD=5.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:636,51,0
2	3721637	rs72082952	ATCTT	A	1101.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;RPA=5,4;RU=TCTT;SB=-1.525e+02;SOR=3.056;STR;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:21:60:1139,60,0
2	3721729	rs12105179	A	G	1267.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.41;SB=-8.920e+02;SOR=0.776;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:93:1296,93,0
2	3721821	rs13406032	A	G	963.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.46;SB=-1.653e+02;SOR=3.180;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:992,72,0
2	3725964	rs72769388	C	T	2362.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-7.430e+02;SOR=2.082;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2391,175,0
2	3726163	rs2043080	T	C	2175.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-1.022e+03;SOR=1.483;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2204,157,0
2	3744728	rs2303902	A	G	498.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.03;SB=0.00;SOR=5.283;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:527,39,0
2	3749084	rs11689171	T	C	2908.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-1.297e+03;SOR=1.167;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2937,223,0
2	3749151	rs66473381	GGAA	G	4791.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.57;RPA=3,2;RU=GAA;SB=-1.857e+03;SOR=1.275;STR;VQSLOD=6.14;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,84:89:99:4829,253,0
2	3749267	rs11681270	G	A	1005.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=0.00;SOR=6.804;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:81:1034,81,0
2	3756073	rs17505481	G	A	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.983;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=1.415;SB=-1.765e+00;SOR=1.085;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:189,0,319
2	3774436	rs357940	C	T	796.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.64;SB=-8.097e+01;SOR=4.003;VQSLOD=5.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:63:825,63,0
2	3774448	rs12711970	T	C	817.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-1.603e+02;SOR=3.014;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:846,63,0
2	3774519	rs357941	T	C	1732.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-7.580e+02;SOR=1.382;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1761,129,0
2	3800383	rs357969	C	T	2023.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.3165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-1.502;SB=-9.570e+02;SOR=0.724;VQSLOD=8.17;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,75:152:99:2052,0,2055
2	3800496	rs357968	C	T	1262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.401;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.873;SB=-6.770e+02;SOR=0.706;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,54:110:99:1291,0,1487
2	3815250	rs10180257	A	G	381.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.508;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.126;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=2.869;SB=-1.500e+02;SOR=0.264;VQSLOD=7.00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,14:22:99:410,0,218
2	3815532	.	A	AT	294.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DP=22;ExcessHet=3.0103;FS=6.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.39;RPA=12,13;RU=T;ReadPosRankSum=0.159;SB=-2.405e+01;SOR=3.912;STR;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,14:22:4:330,0,4
2	3816759	rs13003140	G	T	281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.535;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.341;SB=-3.100e+01;SOR=1.329;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:310,0,251
2	3826324	rs13005405	C	T	567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.443;SB=-3.260e+02;SOR=0.610;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,22:45:99:596,0,637
2	3826387	rs13021385	T	C	636.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.113;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-0.589;SB=-3.840e+02;SOR=0.914;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,26:47:99:665,0,572
2	3826597	rs13035992	G	A	352.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.073;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=1.917;SB=-2.410e+02;SOR=0.313;VQSLOD=7.10;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,15:33:99:381,0,471
2	3832358	rs1466227	T	C	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-2.965;SB=0.00;SOR=0.330;VQSLOD=8.21;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:132,0,233
2	4135981	rs1024026	C	T	770.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.027;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=-0.171;SB=-4.100e+02;SOR=0.775;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,26:47:99:799,0,522
2	4136145	rs1024027	A	G	347.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.906;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-1.116;SB=-6.100e+01;SOR=1.473;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:376,0,314
2	5834249	rs377004457	G	GTGA	369.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQ0=0;MQRankSum=0.728;POSITIVE_TRAIN_SITE;QD=30.45;RPA=5,6;RU=TGA;ReadPosRankSum=-2.010;SB=-1.555e+02;SOR=0.223;STR;VQSLOD=2.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:12:78:407,0,78
2	7001224	rs139571871	TACACACACACGC	T	3551.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.60;SB=-1.064e+03;SOR=2.019;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:33:90:3589,90,0
2	7001259	.	C	A	1315.77	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.60;SB=-6.060e+02;SOR=1.179;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1344,99,0
2	7003879	rs2712039	G	A	403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=0.00;SOR=4.977;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:432,33,0
2	7005069	rs2595172	C	T	492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-1.205e+02;SOR=2.584;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:521,39,0
2	7005369	rs11678810	A	G	1096.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.27;SB=-3.990e+02;SOR=1.681;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1125,81,0
2	7017903	rs10182815	A	G	1371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-6.720e+02;SOR=1.280;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1400,102,0
2	7019079	rs6704746	A	G	1370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;SB=-5.350e+02;SOR=1.880;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1399,108,0
2	7023734	rs147886311	C	T	603.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.252;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.559;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-1.198;SB=-1.320e+02;SOR=1.143;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,22:38:99:632,0,469
2	7027323	rs9917321	T	A	1568.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3455;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-5.880e+02;SOR=1.802;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1597,117,0
2	7046272	.	TACACACACACACACACAC	T	917.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.77;RPA=27,18;RU=AC;ReadPosRankSum=-0.359;SB=-1.764e+00;SOR=1.179;STR;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:14:99:955,0,1280
2	7046309	rs13395107	A	T	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.478;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.779;HaplotypeScore=1.9914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=-0.437;SB=-6.100e+01;SOR=1.222;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:453,0,446
2	7050483	.	ATG	A	747.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;DP=60;ExcessHet=3.0103;FS=2.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.68;RPA=16,15;RU=TG;ReadPosRankSum=0.162;SB=-6.900e+01;SOR=1.302;STR;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,26:60:99:785,0,396
2	7076422	rs10209660	T	A	120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=0.490;SB=0.00;SOR=0.260;VQSLOD=9.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:149,0,345
2	7130599	rs34954937	CATATA	C	659.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;RPA=2,1;RU=ATATA;SB=0.00;SOR=4.615;STR;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:15:27:697,27,0
2	7137067	rs364891	A	G	553.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-2.031e+02;SOR=1.863;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:582,42,0
2	7137435	rs10495548	C	T	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.425;SB=-3.876e+01;SOR=0.693;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:317,0,125
2	7154632	rs309325	T	C	3368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-1.460e+03;SOR=1.244;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3397,259,0
2	7164483	rs6709878	C	T	1076.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.617;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-1.022;SB=-3.670e+02;SOR=0.573;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,41:68:99:1105,0,738
2	7164578	rs376219	A	G	1388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.962;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=4.697;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.277;SB=-6.120e+02;SOR=1.132;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,50:109:99:1417,0,1544
2	7164746	rs392709	C	G	493.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.156;SB=-8.000e+01;SOR=0.941;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:522,0,492
2	7164812	rs392409	C	G	292.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=0.171;SB=0.00;SOR=1.112;VQSLOD=10.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:321,0,197
2	7208060	rs309264	C	A	549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-1.603e+02;SOR=2.303;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:578,42,0
2	7208324	rs1869298	G	T	993.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.364;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=6.575;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.031;SB=-3.810e+02;SOR=1.459;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,35:68:99:1022,0,979
2	7208422	rs1869297	T	C	532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.814;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=0.316;SB=-3.000e+02;SOR=0.725;VQSLOD=9.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,22:53:99:561,0,790
2	7243449	rs72202357	AGTGTGT	A	1008.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;DB;DP=33;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=1.097;POSITIVE_TRAIN_SITE;QD=16.27;RPA=11,8;RU=GT;ReadPosRankSum=0.574;SB=-1.810e+02;SOR=1.292;STR;VQSLOD=0.428;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,15:33:99:1046,0,1267
2	7386160	rs35913686	C	T	348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.051;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.849;HaplotypeScore=2.8271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.42;ReadPosRankSum=0.512;SB=-2.203e+01;SOR=1.131;VQSLOD=7.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,14:47:99:377,0,1093
2	7403641	rs70942695	T	TAC,TACACAC	1464.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.400;DB;DP=40;ExcessHet=3.0103;FS=2.026;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.31;RPA=11,12,14;RU=AC;ReadPosRankSum=-0.695;SB=-5.270e+02;SOR=1.329;STR;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/2:4,18,12:40:99:1502,540,600,626,0,1157
2	7409989	rs10548278	TTG	T	655.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DB;DP=60;ExcessHet=3.0103;FS=3.016;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=1.001;POSITIVE_TRAIN_SITE;QD=15.61;RPA=10,9;RU=TG;ReadPosRankSum=0.126;SB=-1.490e+02;SOR=1.371;STR;VQSLOD=0.503;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,22:60:99:693,0,762
2	7421557	rs4668533	C	G	496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.68;SB=0.00;SOR=5.283;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:525,39,0
2	7471480	.	T	TCTCA,TCACACACA	1537.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.47;MQ0=0;QD=34.95;SB=-3.490e+02;SOR=2.737;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,10,12:23:99:1575,957,952,576,0,721
2	7471732	rs6732990	G	A	457.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=0.00;SOR=5.283;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:486,39,0
2	8822912	.	A	C	116.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.987;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.2617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-2.826;SB=-7.600e+01;SOR=0.399;VQSLOD=6.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,8:28:99:145,0,562
2	8870814	rs6431959	A	G	1113.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-1.503e+02;SOR=3.477;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:84:1142,84,0
2	8887180	rs3351	A	G	635.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.363;HaplotypeScore=2.8893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.95;ReadPosRankSum=-0.507;SB=-4.260e+02;SOR=0.301;VQSLOD=7.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,30:71:99:664,0,1118
2	8887426	rs12622593	A	G	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-1.351;SB=-3.876e+01;SOR=0.180;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:247,0,263
2	8887910	rs1978841	A	T	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=1.616;SB=0.00;SOR=0.582;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:235,0,262
2	8910736	.	G	GT	79.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.98;RPA=16,17;RU=T;ReadPosRankSum=-1.194;SB=0.00;SOR=0.340;STR;VQSLOD=7.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:17:99:117,0,177
2	8910987	rs12476359	A	T	1964.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-5.800e+02;SOR=2.265;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1993,150,0
2	8911010	rs17630893	T	C	783.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.253;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=3.479;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=-1.412;SB=-2.460e+02;SOR=0.229;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,29:47:99:812,0,535
2	8916847	rs4669338	A	T	1569.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.91;SB=-2.640e+02;SOR=3.160;VQSLOD=4.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1598,120,0
2	8943291	rs2356658	G	A	469.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.91;SB=0.00;SOR=5.283;VQSLOD=7.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:498,39,0
2	8998624	rs10929559	A	G	1178.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-5.110e+02;SOR=1.552;VQSLOD=6.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1207,87,0
2	9419411	rs10193043	G	A	1410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-5.160e+02;SOR=1.931;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1439,105,0
2	9419415	rs10170149	C	T	1432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-4.800e+02;SOR=1.981;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1461,108,0
2	9419583	rs10193254	G	A	660.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.880;SB=-3.320e+02;SOR=0.409;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:689,0,658
2	9419608	rs41264165	G	A	620.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.481;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.638;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=-0.120;SB=-1.290e+02;SOR=1.528;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,22:35:99:649,0,373
2	9437413	rs3811600	C	T	543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.032;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=0.217;SB=-9.600e+01;SOR=0.739;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,20:35:99:572,0,425
2	9458460	rs3811599	A	G	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.188;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-0.248;SB=0.00;SOR=0.446;VQSLOD=10.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:238,0,377
2	9458798	rs13426594	G	A	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.451;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.828;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-0.493;SB=-1.390e+02;SOR=0.250;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:278,0,426
2	9463454	rs12475160	C	T	524.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.838;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.510;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=1.436;SB=-9.400e+01;SOR=1.814;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:553,0,530
2	9467815	rs7569295	C	T	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-0.988;SB=-8.097e+01;SOR=0.197;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:214,0,135
2	9484542	rs6724103	C	T	361.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.53;SB=-3.677e+01;SOR=3.258;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:390,30,0
2	9484561	rs79044067	TAAAA	T	812.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;QD=30.27;RPA=10,6;RU=A;SB=-1.210e+02;SOR=3.126;STR;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:850,45,0
2	9491017	rs4669385	C	T	982.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-2.001e+02;SOR=2.910;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:78:1011,78,0
2	9496291	rs2709591	T	C	1743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.791;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=1.508;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-0.639;SB=-8.870e+02;SOR=0.882;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,69:121:99:1772,0,1475
2	9520959	rs12467000	C	T	470.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.982;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=17.198;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-1.057;SB=-2.301e+02;SOR=0.011;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:35:99:499,0,530
2	9528536	rs2715860	G	C	1472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.104;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=13.750;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-0.452;SB=-4.510e+02;SOR=1.877;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,51:103:99:1501,0,1502
2	9528801	rs3811594	T	C	572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.363;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=4.661;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=-0.022;SB=-2.010e+02;SOR=0.260;VQSLOD=7.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,23:61:99:601,0,1148
2	9540849	rs10204214	C	T	1376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.290;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=1.170;SB=-8.350e+02;SOR=0.735;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,54:109:99:1405,0,1613
2	9547171	rs10929579	G	A	1092.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.927;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.944;HaplotypeScore=8.8377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-0.159;SB=-4.820e+02;SOR=0.555;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,40:75:99:1121,0,843
2	9547363	rs10929580	C	A	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=0.898;SB=-5.150e-01;SOR=2.215;VQSLOD=6.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:124,0,276
2	9552379	rs10929581	C	T	102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.91;ReadPosRankSum=0.353;SB=-3.401e+01;SOR=0.330;VQSLOD=9.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:131,0,254
2	9552383	.	A	AT	67.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.21;RPA=12,13;RU=T;ReadPosRankSum=0.640;SB=-2.308e+01;SOR=0.330;STR;VQSLOD=8.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:105,0,147
2	9554255	rs10208358	G	A	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=0.208;SB=-1.600e+02;SOR=0.766;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:27:99:276,0,395
2	9554280	rs12474647	A	T	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=0.420;SB=-1.700e+02;SOR=0.627;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:27:99:272,0,436
2	9554461	rs10185646	C	A	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-0.827;SB=-6.800e+01;SOR=1.863;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:185,0,103
2	9558905	.	CT	C	72.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;DP=28;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.64;RPA=18,17;RU=T;ReadPosRankSum=0.348;SB=-9.732e-01;SOR=1.949;STR;VQSLOD=4.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,8:28:99:110,0,212
2	9569972	rs7589401	A	T	804.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.007;SB=-2.980e+02;SOR=0.634;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,31:60:99:833,0,779
2	9571054	rs2002044	C	T	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-0.881;SB=-3.777e+01;SOR=0.116;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:192,0,326
2	9572888	rs12478467	A	T	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-0.387;SB=-5.900e+01;SOR=0.963;VQSLOD=9.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:23:99:254,0,401
2	9572928	rs34003003	C	T	165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-0.691;SB=-2.801e+01;SOR=0.551;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:194,0,194
2	9576553	rs6432003	T	C	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-0.560;SB=-6.801e+01;SOR=0.283;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:191,0,206
2	9580540	.	G	GT	702.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.67;RPA=2,3;RU=T;ReadPosRankSum=1.226;SB=-4.076e+01;SOR=0.540;STR;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,22:34:99:740,0,377
2	9583922	rs11681316	A	G	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.399;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=0.479;SB=-5.150e-01;SOR=2.303;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:266,0,392
2	9612901	rs4622691	A	C	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.459;SB=0.00;SOR=0.399;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:202,0,306
2	9613289	rs2001658	T	C	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.28;ReadPosRankSum=-0.232;SB=0.00;SOR=0.223;VQSLOD=9.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:81:81,0,250
2	9615556	rs6432007	T	C	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.140;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-0.893;SB=0.00;SOR=0.352;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:31:99:341,0,665
2	9616035	rs7591166	A	G	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.139;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.17;ReadPosRankSum=-0.307;SB=-6.200e+01;SOR=0.754;VQSLOD=9.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,8:22:99:186,0,402
2	9616061	rs61744021	G	A	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=0.339;SB=-1.330e+02;SOR=0.892;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:529,0,284
2	9616301	rs3831465	TAGG	T	351.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;DB;DP=16;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=0.061;SB=-5.400e+01;SOR=1.402;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:16:99:389,0,397
2	9621683	rs2276337	G	A	394.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.952;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-0.433;SB=0.00;SOR=0.693;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:423,0,353
2	9630231	rs6705408	C	T	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.725;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.872;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=-0.916;SB=-7.297e+01;SOR=0.213;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,20:32:99:634,0,394
2	9630244	rs3833563	AT	A	723.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.56;RPA=3,2;RU=T;ReadPosRankSum=0.648;SB=-1.060e+02;SOR=0.880;STR;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,21:39:99:761,0,578
2	9633137	rs4622692	T	G	513.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.671;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=0.646;SB=-2.830e+02;SOR=0.644;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:542,0,390
2	9634856	rs1048610	A	G	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.205;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.568;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=1.151;SB=-2.090e+02;SOR=1.143;VQSLOD=7.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,18:49:99:501,0,878
2	9649966	rs11891922	A	G	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=-0.400;SB=0.00;SOR=1.112;VQSLOD=10.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:320,0,187
2	9661589	rs4278906	C	T	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-0.405;SB=0.00;SOR=1.085;VQSLOD=10.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:193,0,134
2	9981672	rs112717131	T	C	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=-0.307;SB=0.00;SOR=0.693;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:204,0,211
2	9983591	.	A	AG	790.73	PASS	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.96;RPA=1,2;RU=G;SB=-4.060e+02;SOR=0.693;STR;VQSLOD=3.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:19:54:828,54,0
2	9983686	rs2303914	G	T	189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=-1.393;SB=-7.297e+01;SOR=0.293;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:97:218,0,97
2	9985341	rs3214586	TC	T	1255.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DB;DP=82;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.70;RPA=3,2;RU=C;ReadPosRankSum=-1.214;SB=-5.170e+02;SOR=0.848;STR;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,36:82:99:1293,0,1599
2	9994293	rs72782619	C	T	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.691;SB=-3.477e+01;SOR=0.132;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:174,0,232
2	10044875	rs565683	A	G	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.253;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-0.277;SB=-3.400e+01;SOR=0.610;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:308,0,371
2	10044941	.	G	T	758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.552;DP=57;Dels=0.00;ExcessHet=3.0103;FS=6.650;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.31;ReadPosRankSum=0.296;SB=-3.160e+02;SOR=0.191;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,30:57:99:787,0,864
2	10044946	.	G	T	774.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.965;DP=57;Dels=0.00;ExcessHet=3.0103;FS=6.650;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.59;ReadPosRankSum=0.072;SB=-3.150e+02;SOR=0.191;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,30:57:99:803,0,883
2	10044951	rs2052948	A	G	807.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.911;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=6.110;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-0.202;SB=-1.530e+02;SOR=1.604;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,29:61:99:836,0,817
2	10045014	rs400917	C	T	3145.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-1.683e+03;SOR=1.015;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3174,235,0
2	10045024	rs396190	G	A	3316.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-1.974e+03;SOR=0.907;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3345,244,0
2	10045147	rs448327	A	G	2429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-8.860e+02;SOR=1.675;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2458,181,0
2	10050947	rs1054561	T	C	1454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.781;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=4.845;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.308;SB=-6.510e+02;SOR=1.168;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,54:105:99:1483,0,1307
2	10050960	rs1054565	A	G	1441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.875;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.768;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.329;SB=-6.560e+02;SOR=0.886;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,55:104:99:1470,0,1163
2	10051053	rs10495576	G	C	849.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.613;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=-1.931;SB=-1.765e+00;SOR=2.049;VQSLOD=5.85;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,25:45:99:878,0,643
2	10053412	rs12467598	C	T	680.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=7.896;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.30;ReadPosRankSum=0.183;SB=-2.690e+02;SOR=1.644;VQSLOD=5.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,30:82:99:709,0,1276
2	10059097	rs2303921	A	C	1077.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.974;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.363;HaplotypeScore=5.9777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-0.816;SB=-5.040e+02;SOR=1.143;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,43:74:99:1106,0,834
2	10059770	rs1820965	G	T	717.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.079;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=1.164;SB=-2.020e+02;SOR=0.818;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:746,0,557
2	10059844	rs16867245	C	T	740.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.930;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=0.430;SB=-4.470e+02;SOR=0.671;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,29:67:99:769,0,932
2	10188649	rs11687357	A	T	4035.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-2.294e+03;SOR=0.879;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4064,301,0
2	10225241	rs6432058	C	T	1985.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-4.180e+02;SOR=2.948;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2014,150,0
2	10226306	.	G	GC	2061.73	PASS	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=32.63;RPA=1,2;RU=C;SB=-6.010e+02;SOR=1.931;STR;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:47:99:2099,138,0
2	10262920	rs1130609	T	G	2022.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-8.410e+02;SOR=1.329;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2051,150,0
2	10264057	rs6432065	T	C	1218.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=-6.050e+02;SOR=1.455;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:93:1247,93,0
2	10265144	rs72544298	A	G	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.308;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=-0.444;SB=0.00;SOR=1.609;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:327,0,115
2	10267211	rs61754180	T	C	1044.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.361;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=13.093;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=1.634;SB=-2.310e+02;SOR=1.954;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,33:69:99:1073,0,1008
2	10281903	.	G	GC	1083.73	PASS	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;RPA=2,3;RU=C;SB=0.00;SOR=6.666;STR;VQSLOD=4.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1121,81,0
2	10282147	rs11896140	T	C	1617.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.603;SB=-9.600e+02;SOR=0.665;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:75,63:138:99:1646,0,2064
2	10332876	rs56228505	AC	A	563.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;RPA=8,7;RU=C;SB=-2.480e+02;SOR=1.061;STR;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:18:51:601,51,0
2	10595534	rs6721235	T	C	1552.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.507;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.525;SB=-8.670e+02;SOR=0.698;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,52:108:99:1581,0,1382
2	10712137	.	C	T	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.906;SB=0.00;SOR=0.693;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:168,0,135
2	10717714	rs12473957	G	C	414.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.656;SB=-5.700e+01;SOR=0.859;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:443,0,483
2	10718007	rs7570118	G	T	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=-0.361;SB=0.00;SOR=1.270;VQSLOD=10.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:241,0,127
2	10729554	rs759402	A	T	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-0.518;SB=-3.100e+01;SOR=1.179;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:264,0,304
2	10729897	rs759403	C	T	683.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.639;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-0.072;SB=-1.360e+02;SOR=1.402;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,24:39:99:712,0,368
2	10743153	rs2287061	C	T	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.725;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.78;ReadPosRankSum=0.451;SB=-5.000e+01;SOR=0.582;VQSLOD=9.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,4:19:81:81,0,418
2	10743191	rs2287062	G	A	41.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.09;ReadPosRankSum=-0.709;SB=-4.000e+01;SOR=0.340;VQSLOD=9.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:70:70,0,524
2	10747246	rs6744854	C	G	327.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=1.563;SB=0.00;SOR=1.061;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:356,0,237
2	10747271	rs6759740	A	G	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=1.103;SB=0.00;SOR=0.307;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:388,0,280
2	10762302	rs70953325	TA	T	1500.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.66;RPA=2,1;RU=A;SB=-4.230e+02;SOR=1.949;STR;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:39:99:1538,108,0
2	10808776	rs148588415	C	CAA	1744.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.00;SB=-6.830e+02;SOR=1.214;VQSLOD=4.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1782,93,0
2	10813782	rs6748766	T	C	735.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-8.197e+01;SOR=3.716;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:764,57,0
2	10893977	rs373705699	C	T	667.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.573;SB=-2.640e+02;SOR=0.503;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,27:55:99:696,0,745
2	10908727	.	A	C	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.240;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.207;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.03;ReadPosRankSum=1.671;SB=-7.000e+01;SOR=0.250;VQSLOD=5.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,9:26:99:229,0,490
2	10908893	rs1198849	A	G	1592.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-7.020e+02;SOR=1.244;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1621,117,0
2	10911891	rs1198850	T	C	2797.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-8.730e+02;SOR=2.049;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2826,205,0
2	10915020	rs2969881	A	G	821.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.706;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=1.565;SB=-4.550e+02;SOR=0.619;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,32:75:99:850,0,1184
2	10915037	rs13020917	C	T	1016.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.418;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=1.517;SB=-4.510e+02;SOR=0.797;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,36:77:99:1045,0,1068
2	10915090	rs58188788	T	A	1084.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-0.132;SB=-6.010e+02;SOR=0.632;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,45:86:99:1113,0,1121
2	10961184	rs1686497	A	G	1220.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.30;SB=-5.440e+02;SOR=1.179;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1249,93,0
2	10987581	rs73174567	T	A	429.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.212;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.120;SB=-1.710e+02;SOR=0.542;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,18:31:99:458,0,345
2	10994418	rs1198852	T	C	430.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.10;ReadPosRankSum=1.336;SB=0.00;SOR=3.767;VQSLOD=4.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:13:1:456,1,0
2	10994937	rs1198851	C	T	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.816;SB=-3.100e+01;SOR=0.892;VQSLOD=10.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:135,0,179
2	11053020	rs3732104	A	G	2069.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.93;SB=-6.880e+02;SOR=1.727;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2098,160,0
2	11053740	rs3732105	C	T	1544.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4595;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-9.000e+02;SOR=0.981;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1573,114,0
2	11264830	rs7560331	G	A	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.084;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.093;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-0.920;SB=-1.730e+02;SOR=0.957;VQSLOD=7.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,15:34:99:349,0,613
2	11273436	rs66815984	G	GCA	404.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.19;RPA=8,9;RU=CA;ReadPosRankSum=-0.626;SB=-1.960e+02;SOR=0.859;STR;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:26:99:442,0,452
2	11280500	rs138426688	TAA	TA,T	391.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.029;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;RPA=24,23,22;RU=A;ReadPosRankSum=-0.886;SB=-5.104e+01;SOR=1.473;STR;VQSLOD=9.42;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/2:3,13,10:27:99:429,127,129,184,0,303
2	11295867	rs7598570	G	C	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.75;SB=-2.351e+02;SOR=0.836;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:30:402,30,0
2	11300732	rs2271622	C	T	1387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=3.832;HaplotypeScore=8.7823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-1.525;SB=-4.660e+02;SOR=1.104;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,44:101:99:1416,0,1452
2	11300869	rs6432182	T	C	3335.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.7844;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-1.750e+03;SOR=1.220;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3364,256,0
2	11300927	rs59329825	TAAA	T	638.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.818;POSITIVE_TRAIN_SITE;QD=17.26;RPA=20,17;RU=A;ReadPosRankSum=0.875;SB=-6.401e+01;SOR=0.527;STR;VQSLOD=3.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,21:45:99:676,0,157
2	11304172	rs33985535	C	T	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=0.000;SB=0.00;SOR=0.412;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:129,0,217
2	11304471	rs55897888	A	ATTTT	503.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;RPA=13,17;RU=T;SB=-2.677e+01;SOR=3.767;STR;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:17:39:541,39,0
2	11312181	rs12987956	G	A	1307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.727;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=10.515;HaplotypeScore=3.6795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-0.235;SB=-2.090e+02;SOR=1.877;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,46:95:99:1336,0,1334
2	11312224	rs3732103	C	T	829.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.449;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.025;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.261;SB=-8.000e+01;SOR=1.302;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,29:68:99:858,0,1088
2	11333994	rs2271621	T	G	817.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.461;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.089;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=1.030;SB=-2.400e+02;SOR=0.990;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,32:65:99:846,0,876
2	11348609	rs5829297	CAAAT	C	330.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.467;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=1.103;SB=-9.732e-01;SOR=1.270;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,7:26:99:368,0,1009
2	11356190	rs726843	G	A	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.805;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=1.684;SB=-1.205e+02;SOR=0.078;VQSLOD=6.89;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,10:16:99:323,0,129
2	11359031	rs9808228	G	T	1449.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-1.543e+02;SOR=4.073;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1478,114,0
2	11359120	rs2230774	G	T	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.743;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.788;HaplotypeScore=4.6592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=-0.751;SB=-5.350e+02;SOR=0.821;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,37:94:99:944,0,1498
2	11593496	rs61016299	A	G	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=0.091;SB=0.00;SOR=1.270;VQSLOD=10.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:250,0,117
2	11696806	rs16857629	C	T	834.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=4.522;HaplotypeScore=2.4424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.451;SB=-4.830e+02;SOR=0.579;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,32:73:99:863,0,1252
2	11696911	rs201646318	G	A	708.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-1.060;SB=-2.630e+02;SOR=0.598;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,26:64:99:737,0,1042
2	11702661	rs10929757	A	C	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.504;SB=-3.100e+02;SOR=0.495;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,22:42:99:559,0,501
2	11706672	rs142882892	C	T	1126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.529;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=9.127;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=0.895;SB=-5.690e+02;SOR=0.214;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,43:98:99:1155,0,1593
2	11706693	rs4669751	T	C	1779.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.957;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=2.673;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=-0.737;SB=-6.120e+02;SOR=1.032;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,60:109:99:1808,0,1384
2	11706892	rs6740248	C	G	1396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=3.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=0.204;SB=-2.610e+02;SOR=1.197;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,46:93:99:1425,0,1224
2	11718591	rs1529868	C	T	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.592;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.436;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.36;ReadPosRankSum=0.725;SB=-1.352e-01;SOR=2.599;VQSLOD=6.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:30:99:279,0,589
2	11725179	.	G	GA	417.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;DP=38;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.29;RPA=11,12;RU=A;ReadPosRankSum=-1.102;SB=-5.300e+01;SOR=1.519;STR;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,23:38:99:455,0,245
2	11725241	rs12470971	G	A	1072.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.653;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7742;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=0.943;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.343;SB=-5.520e+02;SOR=0.660;VQSLOD=3.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,45:83:99:1101,0,962
2	11727507	rs13394619	G	A	1064.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.822;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-0.023;SB=-6.700e+02;SOR=0.648;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,42:83:99:1093,0,1142
2	11731774	rs2358040	T	G	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=0.618;SB=-3.101e+01;SOR=0.527;VQSLOD=10.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:141,0,173
2	11733134	rs76842987	C	G	1657.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.893;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=2.373;HaplotypeScore=10.0376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-1.261;SB=-8.090e+02;SOR=0.502;VQSLOD=7.32;culprit=DP	GT:AD:DP:GQ:PL	0/1:60,64:124:99:1686,0,1636
2	11736037	rs11679686	A	G	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=1.188;SB=0.00;SOR=1.022;VQSLOD=10.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:252,0,156
2	11738091	rs1435547	T	C	6257.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=206;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-3.829e+03;SOR=0.859;VQSLOD=3.92;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,206:206:99:6286,470,0
2	11738765	rs1865575	C	T	648.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=0.00;SOR=5.892;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:677,54,0
2	11741157	rs16857679	A	G	637.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=3.185;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-1.663;SB=-2.560e+02;SOR=0.242;VQSLOD=8.09;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,27:46:99:666,0,514
2	11741193	rs11681838	C	A	1109.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.40;SB=0.00;SOR=6.869;VQSLOD=4.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:87:1138,87,0
2	11742458	rs72772088	A	G	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=0.097;SB=-9.500e+01;SOR=0.484;VQSLOD=8.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,14:36:99:340,0,667
2	11752635	rs2304399	T	C	3310.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-1.910e+03;SOR=0.731;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3339,250,0
2	11755443	rs2252958	T	G	587.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.550;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.168;HaplotypeScore=1.9661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.881;SB=-9.801e+01;SOR=0.223;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,21:40:99:616,0,605
2	11757009	rs6735957	A	G	1368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-3.600e+02;SOR=2.476;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1397,102,0
2	11757023	rs892868	C	T	1326.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=-2.391e+02;SOR=3.145;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1355,102,0
2	11757076	rs3792038	G	C	846.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-1.245e+02;SOR=3.258;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:875,66,0
2	11757086	rs3792037	G	A	655.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-1.135e+02;SOR=2.712;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:684,51,0
2	11761309	rs2304401	T	C	948.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-1.205e+02;SOR=3.611;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:977,72,0
2	11761340	rs67491307	GCTGA	G	545.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.58;ReadPosRankSum=0.154;SB=-7.476e+01;SOR=0.275;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:17:99:583,0,446
2	11775342	rs199765141	C	T	584.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.596;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.18;ReadPosRankSum=-1.249;SB=-1.910e+02;SOR=1.190;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,23:48:99:613,0,764
2	11810095	rs6432225	G	A	601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-2.211e+02;SOR=1.609;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:630,48,0
2	11817812	rs4669769	G	C	511.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.356;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-0.505;SB=-2.740e+02;SOR=0.628;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:540,0,428
2	11853774	rs12465629	T	C	899.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=0.00;SOR=6.439;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:928,72,0
2	11853988	rs12465630	A	T	2992.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-1.723e+03;SOR=0.839;VQSLOD=5.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3021,223,0
2	11854099	rs4668739	T	C	1429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-4.520e+02;SOR=2.352;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1458,114,0
2	11945108	.	GT	G	258.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;DP=74;ExcessHet=3.0103;FS=5.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.98;RPA=16,15;RU=T;ReadPosRankSum=0.377;SB=-1.440e+02;SOR=0.230;STR;VQSLOD=4.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,20:74:99:296,0,910
2	11959905	rs2716609	T	C	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=0.536;SB=0.00;SOR=0.223;VQSLOD=9.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:94:94,0,250
2	12864766	rs2288192	C	T	508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.373;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=-0.242;SB=-2.370e+02;SOR=0.446;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:537,0,418
2	12877307	rs13016883	C	G	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=0.043;SB=-5.700e+01;SOR=1.201;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:313,0,236
2	12877501	rs33977954	G	GA	824.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=45;ExcessHet=3.0103;FS=6.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=0.531;SB=-3.400e+02;SOR=0.965;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,20:45:99:862,0,931
2	15318128	rs188714994	T	C	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.066;SB=-4.276e+01;SOR=0.283;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:240,0,207
2	15319070	rs5829492	TA	T	260.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DB;DP=33;ExcessHet=3.0103;FS=3.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.15;RPA=13,12;RU=A;ReadPosRankSum=-0.905;SB=-3.600e+01;SOR=1.547;STR;VQSLOD=7.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,16:33:99:298,0,361
2	15378571	rs201826938	T	C	902.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.308;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=2.013;HaplotypeScore=3.6630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=-0.481;SB=-2.470e+02;SOR=1.075;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,32:90:99:931,0,1517
2	15378822	rs112030097	G	GAATT	1317.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.34;SB=0.00;SOR=6.091;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:1355,60,0
2	15471002	rs6759219	C	A	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.385;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=0.459;SB=0.00;SOR=1.911;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:394,0,120
2	15491994	.	GCACACACACACA	GCA,G	3839.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;RPA=17,12,11;RU=CA;SB=-1.031e+03;SOR=2.049;STR;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,26,8:38:99:3877,318,215,1059,0,1073
2	15493881	rs2277915	A	G	1311.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-2.401e+02;SOR=3.202;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1340,99,0
2	15519992	rs2058866	G	T	1307.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-3.130e+02;SOR=2.726;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1336,102,0
2	15523266	rs6756934	A	T	1105.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-1.513e+02;SOR=3.477;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:84:1134,84,0
2	15523307	rs3834149	TA	T	1266.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.39;RPA=9,8;RU=A;SB=-3.150e+02;SOR=2.400;STR;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1304,144,0
2	15523549	rs3755129	T	C	542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=0.00;SOR=5.670;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:571,42,0
2	15533689	rs2380650	T	C	362.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.99;SB=0.00;SOR=4.804;VQSLOD=8.35;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,10:10:30:391,30,0
2	15533734	rs71994225	G	GAAATGAAAGCGTATGTCTACAC	1409.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.04;RPA=1,2;RU=AAATGAAAGCGTATGTCTACAC;SB=0.00;SOR=3.912;STR;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:12:18:1447,18,0
2	15533779	rs9710889	G	A	1457.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-7.130e+02;SOR=1.298;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1486,108,0
2	15533884	rs9710962	C	A	1066.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=-5.440e+02;SOR=1.329;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:78:1095,78,0
2	15533895	rs13417550	A	G	983.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-4.090e+02;SOR=1.819;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1012,75,0
2	15533899	rs11689153	A	G	1035.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-3.710e+02;SOR=1.981;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1064,78,0
2	15533998	rs11678132	C	T	404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.24;SB=0.00;SOR=4.977;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:433,33,0
2	15564718	rs10929367	T	C	531.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-4.276e+01;SOR=3.912;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:560,42,0
2	15567649	rs3796002	T	C	1124.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-2.291e+02;SOR=2.964;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1153,84,0
2	15601287	rs33963439	A	AT	1473.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.01;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-4.840e+02;SOR=1.681;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1511,96,0
2	15601441	rs7590340	C	T	1527.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-8.510e+02;SOR=1.094;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1556,114,0
2	15601574	rs7590458	C	T	329.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-4.276e+01;SOR=3.258;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:358,27,0
2	15607842	rs4668909	T	C	1922.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.70;SB=-1.306e+03;SOR=0.723;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1951,138,0
2	15608013	rs4668910	C	A	516.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=0.00;SOR=5.421;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:545,42,0
2	15613678	rs11898971	T	C	630.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-2.031e+02;SOR=1.863;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:659,48,0
2	15613715	rs11893303	G	A	418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.90;SB=-1.115e+02;SOR=1.981;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:447,33,0
2	15614404	rs13014906	T	C	1631.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-7.510e+02;SOR=1.402;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1660,120,0
2	15615704	rs35237017	T	C	579.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.63;SB=0.00;SOR=5.549;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:608,45,0
2	15615910	rs1990754	A	G	2667.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-1.652e+03;SOR=0.780;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2696,199,0
2	15616013	rs1990755	C	G	1525.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.91;SB=-3.910e+02;SOR=2.461;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1554,117,0
2	15616030	rs1990756	C	T	1245.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=-2.750e+02;SOR=2.774;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1274,99,0
2	15618339	rs1125534	G	A	1409.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-3.590e+02;SOR=2.476;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1438,108,0
2	15623608	rs10201564	C	G	540.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.09;SB=0.00;SOR=5.549;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:569,42,0
2	15644107	rs3732002	C	A	1125.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=0.00;SOR=6.804;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1154,87,0
2	15644111	rs3732003	C	T	1180.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=0.00;SOR=6.994;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1209,96,0
2	15644401	rs2287265	C	T	1754.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-2.840e+02;SOR=3.528;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1783,135,0
2	15674686	rs13029846	T	C	2953.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-1.856e+03;SOR=0.863;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2982,214,0
2	15676686	rs10208972	G	A	1611.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.124;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.926;HaplotypeScore=5.0024;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.41;ReadPosRankSum=-1.355;SB=-4.042e+02;SOR=2.540;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,51:54:82:1640,82,0
2	15678482	rs2380657	T	C	582.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.72;SB=-4.276e+01;SOR=4.047;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:611,45,0
2	15678501	rs66736557	GA	G	480.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.30;RPA=9,8;RU=A;SB=-8.751e+01;SOR=2.948;STR;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:518,57,0
2	15691886	rs7572131	G	A	764.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.83;SB=0.00;SOR=6.091;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:793,60,0
2	15694164	rs144766275	T	TA	691.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.33;SB=-2.043e+02;SOR=1.911;VQSLOD=3.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:729,45,0
2	15731998	rs10221770	A	G	452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.63;SB=-2.770e+02;SOR=0.941;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:36:481,36,0
2	15735648	rs2302929	T	C	1454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;SB=-8.550e+02;SOR=1.051;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1483,105,0
2	15736697	rs2032778	G	A	1672.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-5.700e+02;SOR=2.004;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1701,126,0
2	15746220	rs41264195	C	T	2480.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=-1.225e+03;SOR=0.920;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2509,190,0
2	15747393	rs10929378	C	T	2111.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-1.039e+03;SOR=1.394;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2140,160,0
2	15753279	rs2302934	C	G	856.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-1.991e+02;SOR=2.670;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:885,66,0
2	15757226	rs11305723	CT	C	230.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;RPA=12,11;RU=T;ReadPosRankSum=1.278;SB=0.00;SOR=2.985;STR;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,12:15:15:268,0,15
2	15769607	rs807635	C	T	662.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=0.00;SOR=5.784;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:691,51,0
2	15840505	rs4668460	C	A	681.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.410;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.093;HaplotypeScore=2.9322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=-0.243;SB=-3.660e+02;SOR=0.886;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,25:50:99:710,0,714
2	15840522	rs4668461	G	T	654.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-0.495;SB=-3.530e+02;SOR=0.704;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,25:50:99:683,0,687
2	15840645	rs4668962	T	C	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=9.840;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-0.171;SB=-1.905e+01;SOR=2.722;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:452,0,500
2	15841230	rs1421610	T	A	213.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.556;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.248;SB=0.00;SOR=0.446;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:242,0,373
2	15841288	rs1421609	G	A	648.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.161;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=-0.463;SB=-6.200e+01;SOR=1.402;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,22:40:99:677,0,526
2	16743453	rs6751062	A	C	851.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.447;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=1.044;SB=-3.560e+02;SOR=0.859;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,33:68:99:880,0,968
2	16769240	rs73211552	A	G	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=0.291;SB=0.00;SOR=0.412;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:135,0,201
2	17466012	rs1976809	T	C	590.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.386;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.704;SB=-3.590e+02;SOR=0.274;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:619,0,598
2	17466075	rs10208884	A	G	384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.983;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.690;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.170;SB=-1.270e+02;SOR=0.368;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:413,0,397
2	17695345	.	A	C	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.140;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.378;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.477;SB=-1.140e+02;SOR=1.179;VQSLOD=6.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,15:39:99:374,0,725
2	17696573	rs834514	C	T	2154.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-1.334e+03;SOR=0.722;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2183,160,0
2	17698678	rs665312	A	G	680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-3.610e+02;SOR=1.085;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:709,51,0
2	17773524	rs2680827	G	A	1589.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-6.040e+02;SOR=1.747;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1618,120,0
2	17846592	rs2710674	A	T	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.95;SB=0.00;SOR=4.804;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
2	17899291	rs114914021	C	T	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.436;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=0.947;SB=-6.500e+01;SOR=1.248;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:463,0,378
2	17913266	rs2052746	A	C	1320.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-1.195e+02;SOR=3.797;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1349,99,0
2	17941423	rs2555072	T	G	991.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.75;SB=-1.205e+02;SOR=3.767;VQSLOD=3.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:1020,75,0
2	17942775	rs1812152	T	A	1740.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-1.021e+03;SOR=0.767;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1769,132,0
2	17954027	rs300175	G	A	1965.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-1.069e+03;SOR=1.146;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1994,144,0
2	17954140	rs300176	A	G	614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-2.061e+02;SOR=1.863;VQSLOD=7.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:19:48:643,48,0
2	17954421	rs300177	C	G	1904.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-1.197e+03;SOR=0.925;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1933,138,0
2	17959420	rs10535305	TAC	T	349.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.97;RPA=5,4;RU=AC;SB=0.00;SOR=4.804;STR;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:14:30:387,30,0
2	17962450	rs300168	A	G	2553.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-1.174e+03;SOR=1.270;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2582,193,0
2	17962518	rs300169	C	T	2396.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-1.244e+03;SOR=0.840;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2425,184,0
2	17998025	rs34069439	A	T	745.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.812;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=0.759;SB=-3.030e+02;SOR=0.880;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,29:48:99:774,0,547
2	17998095	rs35858730	C	T	681.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=5.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.761;SB=-3.330e+02;SOR=0.847;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,24:49:99:710,0,762
2	18112473	rs4240213	G	A	4473.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-2.343e+03;SOR=0.974;VQSLOD=5.67;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4502,334,0
2	18113508	rs3747516	G	A	4144.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-2.483e+03;SOR=0.708;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4173,307,0
2	18113623	rs4832524	A	G	3878.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-2.084e+03;SOR=0.848;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3907,289,0
2	18736630	rs74378191	C	T	1245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.760;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.945;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=-1.520;SB=-7.110e+02;SOR=0.538;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,47:72:99:1274,0,670
2	18757501	rs3902946	G	C	1016.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.487;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.467;SB=-3.750e+02;SOR=0.665;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,38:88:99:1045,0,1374
2	18768850	rs16985306	A	G	1188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.087;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=2.897;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.147;SB=-3.450e+02;SOR=1.051;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1217,0,1401
2	18770540	rs6720633	G	C	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.777;SB=0.00;SOR=0.602;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:296,0,341
2	19552389	rs851066	T	C	326.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=0.00;SOR=4.804;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:355,30,0
2	19552913	rs12329305	C	T	1416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.884;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=2.059;SB=-7.070e+02;SOR=0.652;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,55:114:99:1445,0,1661
2	20097874	rs12328613	T	C	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.831;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.639;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=-0.044;SB=-9.500e+01;SOR=0.382;VQSLOD=7.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,14:39:99:368,0,758
2	20101363	rs7584726	G	A	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=-0.327;SB=0.00;SOR=1.445;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:269,0,128
2	20101487	rs2304589	G	A	734.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.432;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=9.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-1.269;SB=-7.900e+01;SOR=2.076;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,26:60:99:763,0,974
2	20130412	.	T	G	189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.25;ReadPosRankSum=-1.299;SB=-4.276e+01;SOR=0.399;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:93:218,0,93
2	20131184	rs1191779	C	A	1451.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-3.810e+02;SOR=2.461;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1480,108,0
2	20133346	rs2293670	C	T	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.061;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.033;SB=-1.765e+00;SOR=1.214;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:286,0,386
2	20135283	rs6741091	T	C	1014.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=4.167;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=1.086;SB=-4.630e+02;SOR=1.095;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,37:84:99:1043,0,1202
2	20173255	rs10153717	A	C	968.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.64;SB=-8.297e+01;SOR=4.174;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:75:997,75,0
2	20189089	rs3731663	C	T	1138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.470;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.599;SB=-5.300e+02;SOR=0.658;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,47:84:99:1167,0,893
2	20192696	rs7569975	G	A	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.221;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=-1.706;SB=0.00;SOR=0.990;VQSLOD=10.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:415,0,270
2	20194036	rs3820949	G	C	912.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.310;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.919;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=1.112;SB=-3.590e+02;SOR=1.030;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,33:82:99:941,0,1318
2	20202738	rs16987282	T	C	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=-0.141;SB=0.00;SOR=1.179;VQSLOD=10.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:280,0,156
2	20205423	rs3832086	A	AAAAG	272.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=1.782;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=-0.210;SB=-9.732e-01;SOR=1.002;VQSLOD=3.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,6:23:99:310,0,886
2	20205680	rs28401180	C	T	2988.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;DB;DP=199;Dels=0.00;ExcessHet=3.0103;FS=1.727;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=2.069;SB=-1.668e+03;SOR=0.652;VQSLOD=5.41;culprit=DP	GT:AD:DP:GQ:PL	0/1:92,106:199:99:3017,0,2495
2	20205848	rs28598872	G	A	2776.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.862;DB;DP=190;Dels=0.00;ExcessHet=3.0103;FS=1.783;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.438;SB=-1.557e+03;SOR=0.827;VQSLOD=6.35;culprit=DP	GT:AD:DP:GQ:PL	0/1:93,97:190:99:2805,0,2407
2	20234523	rs1147114	C	T	345.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-1.135e+02;SOR=1.981;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:374,27,0
2	20240668	rs3731673	C	A	1671.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.408;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-0.738;SB=-8.200e+02;SOR=0.781;VQSLOD=7.81;culprit=DP	GT:AD:DP:GQ:PL	0/1:87,67:154:99:1700,0,2252
2	20302460	.	G	A	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8993;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=1.255;QD=17.58;ReadPosRankSum=-1.255;SB=0.00;SOR=1.085;VQSLOD=2.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:93:204,0,93
2	20302466	rs188327208	G	A	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=1.354;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=-1.290;SB=0.00;SOR=1.270;VQSLOD=3.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:85:243,0,85
2	20302472	.	G	A	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=1.441;QD=18.15;ReadPosRankSum=-1.509;SB=-3.577e+01;SOR=0.495;VQSLOD=2.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:52:246,0,52
2	20302478	rs148032589	G	A	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.004;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=1.914;POSITIVE_TRAIN_SITE;QD=19.74;ReadPosRankSum=-1.882;SB=-7.197e+01;SOR=0.430;VQSLOD=3.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,12:16:48:344,0,48
2	20302484	rs62112186	G	A	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.603;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=1.914;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=-1.397;SB=-8.097e+01;SOR=0.430;VQSLOD=3.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,12:16:44:355,0,44
2	20302490	rs7586260	G	A	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=56.83;MQ0=0;MQRankSum=1.980;POSITIVE_TRAIN_SITE;QD=21.22;ReadPosRankSum=-1.304;SB=-4.176e+01;SOR=0.495;VQSLOD=3.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,13:17:77:389,0,77
2	20302527	rs12612373	C	A	601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7460;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.16;SB=-3.930e+02;SOR=0.776;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:26:45:602,45,0
2	20320463	.	C	CA	101.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=-1.052;QD=4.42;RPA=16,17;RU=A;ReadPosRankSum=-0.093;SB=0.00;SOR=0.481;STR;VQSLOD=1.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,10:24:99:139,0,124
2	20401858	rs11350492	TA	T	169.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.49;RPA=17,16;RU=A;ReadPosRankSum=1.430;SB=-4.354e+01;SOR=0.610;STR;VQSLOD=8.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,12:20:99:207,0,122
2	20402033	.	A	C	416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.771;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.88;ReadPosRankSum=-0.512;SB=-2.120e+02;SOR=0.567;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,16:28:99:445,0,313
2	20403794	rs10205485	A	T	847.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-4.210e+02;SOR=0.859;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:876,66,0
2	20405050	rs6531225	A	C	900.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.64;SB=-1.145e+02;SOR=3.611;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:69:929,69,0
2	20423154	rs4666375	A	G	908.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-3.180e+02;SOR=1.863;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:937,69,0
2	20440321	rs2072465	C	T	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.530;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.100;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=-1.205;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=-0.269;SB=-1.611e+01;SOR=1.890;VQSLOD=0.154;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,9:24:99:256,0,375
2	20699625	rs13010768	G	A	415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=-3.876e+01;SOR=3.611;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:444,33,0
2	20699997	rs13017877	C	T	430.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=0.00;SOR=5.136;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:459,36,0
2	20700786	rs961496	C	T	1119.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-3.200e+02;SOR=2.368;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1148,84,0
2	20700900	rs342088	A	G	1992.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-1.232e+03;SOR=0.822;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2021,147,0
2	20729143	rs72362297	C	CTT,CTTT	631.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.16;RPA=13,15,16;RU=T;SB=-9.879e+01;SOR=3.383;STR;VQSLOD=3.21;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,7,10:17:99:669,278,229,149,0,105
2	20729313	rs199606223	T	C	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.215;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.90;MQ0=1;MQRankSum=-4.490;QD=10.58;ReadPosRankSum=-0.847;SB=-2.230e+02;SOR=0.519;VQSLOD=0.585;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,20:39:99:441,0,503
2	20818286	rs3821217	A	C	509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.603e+02;SOR=2.049;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:538,39,0
2	20818454	rs3732152	T	A	830.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-4.700e+02;SOR=0.770;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:859,66,0
2	20822218	rs4666444	T	C	812.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-2.041e+02;SOR=2.753;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:841,66,0
2	20823612	rs13030108	A	G	341.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-7.897e+01;SOR=2.494;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:370,27,0
2	20823724	rs6531248	T	C	479.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-2.401e+02;SOR=1.112;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:508,39,0
2	20823816	rs2305460	G	T	420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.05;SB=-1.931e+02;SOR=1.473;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:449,33,0
2	20838560	rs7596314	A	G	455.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.62;SB=0.00;SOR=5.136;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:484,36,0
2	20841059	rs4666449	C	T	936.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.46;SB=-1.881e+02;SOR=2.833;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:965,72,0
2	20845273	rs2304423	G	A	627.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.800;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=1.986;SB=-2.390e+02;SOR=0.195;VQSLOD=7.68;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,23:50:99:656,0,845
2	20870031	rs13013895	C	G	424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=0.00;SOR=4.977;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:453,33,0
2	20870579	rs13013489	G	A	324.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-4.076e+01;SOR=3.258;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:353,27,0
2	20871190	rs4666457	A	C	1227.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-1.195e+02;SOR=4.294;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1256,102,0
2	20884550	rs11693849	C	A	1256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.880;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=6.496;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=-0.978;SB=-4.020e+02;SOR=1.531;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,44:77:99:1285,0,889
2	20939706	rs2046325	T	C	1404.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.072;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=7.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.45;ReadPosRankSum=1.733;SB=-2.202e+02;SOR=3.285;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,41:42:99:1433,108,0
2	20939708	rs653347	C	T	1382.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=-1.931e+02;SOR=3.312;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1411,105,0
2	21225281	rs1042034	C	T	2827.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-9.380e+02;SOR=1.816;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2856,217,0
2	21232195	rs693	G	A	3031.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-1.576e+03;SOR=0.929;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3060,226,0
2	21232803	rs584542	T	C	1588.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-8.930e+02;SOR=1.118;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1617,114,0
2	21232804	rs1041968	G	A	1596.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=-9.140e+02;SOR=1.061;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1625,117,0
2	21232811	.	A	G	891.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.155;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.62;ReadPosRankSum=0.857;SB=-5.690e+02;SOR=0.601;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,34:61:99:920,0,647
2	21235475	rs568413	T	C	2786.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-1.166e+03;SOR=1.508;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2815,202,0
2	21236482	rs488329	A	G	673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-1.235e+02;SOR=2.948;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:702,51,0
2	21251040	rs570877	T	G	1828.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-7.390e+02;SOR=1.528;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1857,135,0
2	21255573	rs66636284	C	CCATCT	2404.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-9.176e+01;SOR=5.421;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:2442,90,0
2	21263639	rs531819	T	G	1322.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=0.00;SOR=7.112;VQSLOD=4.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1351,102,0
2	21265141	rs661665	C	A	443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-4.076e+01;SOR=3.611;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:472,36,0
2	21360583	rs312966	A	G	758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.092;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.891;SB=-3.980e+02;SOR=1.071;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,29:65:99:787,0,1080
2	23621739	rs56227367	TTGA	T	672.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=43;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.02;RPA=3,2;RU=TGA;ReadPosRankSum=1.419;SB=-2.890e+02;SOR=1.022;STR;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,15:43:99:710,0,1443
2	23785517	rs4665225	A	G	295.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-7.497e+01;SOR=2.303;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:324,24,0
2	23785524	rs11686638	C	A	291.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.18;SB=-7.997e+01;SOR=2.303;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:320,24,0
2	23862187	rs540290	C	G	903.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.618;SB=-3.010e+02;SOR=0.664;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,32:71:99:932,0,1074
2	23865014	rs497973	G	A	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.693;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.920;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-0.606;SB=-1.290e+02;SOR=1.552;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:474,0,646
2	23865260	rs642931	T	C	960.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.886;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.724;SB=-5.410e+02;SOR=0.491;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,37:77:99:989,0,1029
2	23865908	rs527176	G	C	1277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.345;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=7.661;HaplotypeScore=29.8973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=-2.087;SB=-5.990e+02;SOR=0.508;VQSLOD=5.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,48:69:99:1306,0,490
2	23919375	rs3795942	C	T	738.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-1.901e+02;SOR=2.303;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:767,57,0
2	23926659	rs3795948	T	C	1981.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-1.265e+03;SOR=0.787;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2010,144,0
2	23977377	rs56218741	A	C	435.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=2.009;SB=0.00;SOR=0.631;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:464,0,489
2	23985329	rs2712070	A	T	442.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.45;SB=0.00;SOR=5.136;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:471,36,0
2	24009163	rs9636434	A	G	693.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=1.587;SB=-1.490e+02;SOR=0.573;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:45:99:722,0,616
2	24021231	rs17509001	T	C	1083.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.078;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-0.223;SB=-2.370e+02;SOR=0.970;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,38:69:99:1112,0,875
2	24042550	rs2879639	C	T	1716.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-3.470e+02;SOR=2.880;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1745,126,0
2	24055058	rs10432637	G	C	3496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-2.131e+03;SOR=0.804;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3525,253,0
2	24087621	rs72788214	A	C	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.790;SB=0.00;SOR=0.446;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:166,0,243
2	24087857	rs12623316	A	G	416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-1.324;SB=-7.300e+01;SOR=0.172;VQSLOD=9.06;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,16:28:99:445,0,367
2	24095285	rs72788278	A	C	96.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=1.104;SB=-9.732e-01;SOR=1.981;VQSLOD=6.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:125,0,215
2	24095557	rs369124881	C	T	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.66;ReadPosRankSum=1.493;SB=-1.360e+02;SOR=0.804;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:315,0,276
2	24103432	rs374010112	CA	C	207.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.29;RPA=14,13;RU=A;ReadPosRankSum=-0.398;SB=-6.200e+01;SOR=0.722;STR;VQSLOD=6.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,15:33:99:245,0,305
2	24108557	rs72790304	G	A	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.191;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-0.756;SB=-6.500e+01;SOR=0.848;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:456,0,494
2	24108652	rs7579201	T	C	2795.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.82;SB=-1.456e+03;SOR=1.076;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2824,208,0
2	24110911	.	G	GA	82.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.14;RPA=10,11;RU=A;ReadPosRankSum=-1.362;SB=-1.807e+01;SOR=0.693;STR;VQSLOD=8.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:22:99:120,0,314
2	24111106	rs372642527	T	C	121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-1.963;SB=-3.100e+01;SOR=0.941;VQSLOD=7.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:150,0,286
2	24111311	rs72790306	T	G	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=-1.645;SB=-3.350e+02;SOR=0.495;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,24:34:99:660,0,247
2	24149439	rs61739076	G	A	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.083;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.128;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=1.698;SB=-9.732e-01;SOR=2.303;VQSLOD=6.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,12:27:99:361,0,459
2	24181159	rs12616678	G	T	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.92;ReadPosRankSum=-1.759;SB=-3.100e+01;SOR=0.446;VQSLOD=9.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:123,0,373
2	24194314	rs1533440	C	T	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-1.601;SB=-6.800e+01;SOR=0.473;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:231,0,320
2	24239189	.	T	TCCTGGC	1834.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;DP=58;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.64;RPA=1,2;RU=CCTGGC;ReadPosRankSum=1.521;SB=-6.430e+02;SOR=1.145;STR;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,23:58:99:1872,0,2357
2	24245659	rs17712391	C	T	658.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.076;HaplotypeScore=2.8933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=1.269;SB=-2.260e+02;SOR=0.866;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,24:57:99:687,0,858
2	24246175	rs12989842	C	T	1352.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-3.300e+02;SOR=2.780;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1381,102,0
2	24246679	rs925228	A	G	2496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;SB=-4.650e+02;SOR=3.026;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2525,187,0
2	24253661	rs137952507	CAG	C	371.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=33.79;ReadPosRankSum=-0.381;SB=-5.676e+01;SOR=0.693;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:99:409,0,138
2	24255862	rs10179142	C	G	1477.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-4.730e+02;SOR=1.900;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1506,114,0
2	24255991	rs17763442	C	T	619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.384;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.385;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.628;SB=-2.100e+02;SOR=0.455;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,22:41:99:648,0,577
2	24277709	rs72781699	G	A	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.067;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-1.587;SB=-3.300e+01;SOR=0.693;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:322,0,351
2	24291445	rs72783611	C	T	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.539;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=0.216;SB=-3.401e+01;SOR=1.519;VQSLOD=8.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,17:26:99:593,0,228
2	24302246	rs2303287	C	T	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-1.241;SB=-3.401e+01;SOR=0.269;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:161,0,289
2	24305888	rs33946528	G	A	570.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.550;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.145;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.728;SB=-3.170e+02;SOR=0.449;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,21:49:99:599,0,843
2	24338777	rs35038662	CA	C	66.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;DB;DP=14;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.56;RPA=18,17;RU=A;ReadPosRankSum=-0.078;SB=-1.770e+00;SOR=2.419;STR;VQSLOD=6.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,7:14:99:104,0,100
2	24342505	rs1056122	T	C	1359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=14.210;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-0.711;SB=-8.910e+02;SOR=0.118;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,55:88:99:1388,0,953
2	24344060	rs33913065	T	G	1081.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.548;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=7.491;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-1.061;SB=-6.450e+02;SOR=0.257;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,44:79:99:1110,0,959
2	24369674	rs11693860	C	T	1558.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-8.700e+02;SOR=0.900;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1587,117,0
2	24384424	rs4665667	T	C	641.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3614;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-2.890e+02;SOR=1.609;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:670,48,0
2	24386925	rs147058305	C	CA	101.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.27;RPA=7,8;RU=A;ReadPosRankSum=-1.743;SB=0.00;SOR=0.473;STR;VQSLOD=9.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:14:99:139,0,176
2	24387178	.	G	GC	2562.73	PASS	AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.20;RPA=1,2;RU=C;SB=-5.730e+02;SOR=2.564;STR;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:57:99:2600,169,0
2	24388096	rs4665668	G	A	1736.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-4.630e+02;SOR=2.259;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1765,132,0
2	24390517	rs2288072	G	A	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.334;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.395;SB=-2.510e+02;SOR=0.633;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:511,0,535
2	24395269	rs918802	T	C	454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=0.00;SOR=5.136;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:483,36,0
2	24395294	rs918803	T	C	518.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=0.00;SOR=5.549;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:547,42,0
2	24395506	rs889830	T	C	593.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.27;SB=-2.381e+02;SOR=1.828;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:622,48,0
2	24398281	rs2042467	T	G	1124.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-8.097e+01;SOR=4.743;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1153,93,0
2	24398446	rs2042468	A	T	895.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.151;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.156;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-0.609;SB=-3.170e+02;SOR=1.074;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,33:67:99:924,0,883
2	24400769	rs55661701	A	C	600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.125;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=7.033;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.611;SB=-2.390e+02;SOR=1.609;VQSLOD=6.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,25:63:99:629,0,950
2	24402127	rs67429271	C	CAA	888.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.02;SB=-3.441e+02;SOR=1.244;VQSLOD=4.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:926,48,0
2	24413298	rs2288073	A	G	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.713;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.636;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=1.897;SB=-3.390e+02;SOR=0.561;VQSLOD=7.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,21:40:99:611,0,500
2	24428859	rs72793980	T	C	405.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.336;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=-1.190;SB=-1.420e+02;SOR=1.609;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,13:17:99:434,0,113
2	24431184	rs2303291	C	T	489.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.365;SB=-2.690e+02;SOR=0.693;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:40:99:518,0,556
2	24432138	rs2303292	C	T	623.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.045;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.668;SB=-3.030e+02;SOR=0.693;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,26:52:99:652,0,726
2	24432211	rs2303293	C	T	931.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-4.150e+02;SOR=1.473;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:69:960,69,0
2	24432620	rs2303294	A	G	647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.747;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=2.817;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=0.712;SB=-8.297e+01;SOR=0.233;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:676,0,372
2	24432667	rs2303295	C	G	1696.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-5.670e+02;SOR=2.262;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1725,132,0
2	24432839	rs2303296	A	G	690.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.837;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.745;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-1.140;SB=-3.850e+02;SOR=0.298;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,28:65:99:719,0,1080
2	24432937	rs2303297	C	T	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-0.899;SB=0.00;SOR=0.602;VQSLOD=10.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:249,0,314
2	24439276	rs13021828	G	C	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-0.279;SB=-3.876e+01;SOR=0.132;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:174,0,248
2	24440997	rs2551183	A	T	720.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SB=-7.997e+01;SOR=3.816;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:749,57,0
2	24475205	rs4450560	T	C	1493.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-4.180e+02;SOR=2.303;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1522,114,0
2	24484150	rs4665680	T	C	950.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-1.215e+02;SOR=3.611;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:979,72,0
2	24498839	rs4411652	T	G	490.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.027;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=-1.242;SB=0.00;SOR=3.912;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,13:14:39:519,39,0
2	24509370	rs17733015	T	C	123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=2.042;SB=0.00;SOR=0.551;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:152,0,195
2	24521493	rs7559133	C	T	654.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-1.871e+02;SOR=2.200;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:683,51,0
2	24521766	rs6707600	C	T	815.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-1.195e+02;SOR=3.442;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:844,66,0
2	24524725	rs72793213	A	G	350.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.003;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-1.162;SB=-6.600e+01;SOR=0.741;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:379,0,448
2	24524958	rs7603997	C	T	717.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=2.142;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=-0.977;SB=-2.430e+02;SOR=1.011;VQSLOD=8.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,30:72:99:746,0,1080
2	24896254	.	C	T	1898.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.288;DP=111;Dels=0.00;ExcessHet=3.0103;FS=4.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.11;ReadPosRankSum=-0.777;SB=-4.290e+02;SOR=1.235;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,63:111:99:1927,0,1369
2	24905927	rs11125744	G	C	1283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=6.430;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=0.529;SB=-6.300e+02;SOR=1.154;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,47:76:99:1312,0,691
2	24914225	rs374090023	A	T	88.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.40;ReadPosRankSum=0.654;SB=0.00;SOR=0.269;VQSLOD=7.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:117,0,276
2	24930613	.	A	C	395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.444;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.143;SB=-9.200e+01;SOR=0.723;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:424,0,674
2	24933689	rs7593430	A	C	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.311;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.191;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=0.544;SB=-1.765e+00;SOR=2.584;VQSLOD=6.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,13:21:99:475,0,216
2	24952712	rs375818965	CT	C	169.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.72;RPA=13,12;RU=T;ReadPosRankSum=-0.329;SB=-2.006e+01;SOR=0.693;STR;VQSLOD=7.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,11:27:99:207,0,205
2	24952740	rs67177939	C	CT	983.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.14;SB=-1.010e+02;SOR=3.816;VQSLOD=4.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:1021,63,0
2	24962252	rs3820933	G	A	559.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.677;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.367;SB=-1.050e+02;SOR=0.657;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,20:35:99:588,0,446
2	24974945	rs11125763	T	G	1333.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-7.410e+02;SOR=1.105;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:96:1362,96,0
2	25013062	rs10177595	T	C	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-0.200;SB=0.00;SOR=0.693;VQSLOD=10.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:170,0,171
2	25013523	rs12471620	G	C	283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=-0.294;SB=0.00;SOR=1.061;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:312,0,227
2	25022442	rs68095203	TA	T	112.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;DB;DP=23;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.64;RPA=13,12;RU=A;ReadPosRankSum=-0.076;SB=-3.400e+01;SOR=1.329;STR;VQSLOD=6.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:23:99:150,0,254
2	25038268	rs2082881	G	A	536.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=0.00;SOR=5.549;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:565,45,0
2	25039804	rs2099505	G	A	938.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=-1.453e+02;SOR=3.180;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:967,72,0
2	25040423	rs10178420	G	A	856.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-1.951e+02;SOR=2.910;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:69:885,69,0
2	25042622	rs7945	A	G	153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.691;SB=0.00;SOR=0.569;VQSLOD=9.75;culprit=SOR	GT:AD:DP:GQ:PL	0/1:7,6:13:99:182,0,240
2	25042625	rs1044040	C	G	501.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.04;SB=0.00;SOR=5.283;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:530,39,0
2	25046090	rs1127568	T	C	666.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.275;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=1.503;SB=-2.180e+02;SOR=0.330;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,26:49:99:695,0,668
2	25046355	rs4665273	T	C	712.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.921;HaplotypeScore=23.1167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=0.493;SB=-1.330e+02;SOR=0.377;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,25:38:99:741,0,359
2	25046361	.	A	ATT,AT	406.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.311;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.34;RPA=17,19,18;RU=T;ReadPosRankSum=-0.063;SB=-7.894e+00;SOR=3.716;STR;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,9,9:31:99:444,155,158,188,0,158
2	25047408	rs7604576	A	G	1042.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.956;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.822;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.626;SB=-5.180e+02;SOR=0.545;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,42:96:99:1071,0,1363
2	25048847	rs2289090	A	G	603.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.821;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.559;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.089;SB=-1.350e+02;SOR=1.143;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,22:38:99:632,0,426
2	25050977	rs7566416	T	C	1054.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.361;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.725;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.420;SB=-4.740e+02;SOR=0.233;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,38:74:99:1083,0,950
2	25054261	rs753529	G	A	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-0.087;SB=0.00;SOR=0.859;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:198,0,145
2	25057298	rs2278486	C	G	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=2.109;SB=-1.765e+00;SOR=2.093;VQSLOD=6.09;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:206,0,187
2	25062634	rs11125810	A	G	562.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=0.00;SOR=5.549;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:591,45,0
2	25064193	rs2241759	G	A	152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.942;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-0.169;SB=-1.090e+02;SOR=0.446;VQSLOD=10.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:181,0,200
2	25100738	rs10865315	C	A	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.135;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=-2.053;SB=-4.400e+01;SOR=1.706;VQSLOD=6.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,12:40:99:371,0,791
2	25100902	rs2033656	C	G	774.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.674;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.053;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.926;SB=-4.250e+02;SOR=0.494;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:55:99:803,0,669
2	25141538	rs11676272	A	G	1511.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.573;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=5.456;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-0.664;SB=-8.800e+02;SOR=0.357;VQSLOD=7.57;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,59:133:99:1540,0,2150
2	25179893	rs77483992	C	T	1095.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.767;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=0.683;SB=-4.640e+02;SOR=0.547;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,44:102:99:1124,0,1672
2	25190127	rs6749438	G	A	776.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.348;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-1.256;SB=-3.410e+02;SOR=0.414;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,30:61:99:805,0,885
2	25194586	rs7593743	G	A	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.261;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.658;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.96;ReadPosRankSum=0.345;SB=-7.100e+01;SOR=0.067;VQSLOD=6.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,12:31:99:275,0,677
2	25194741	rs7593864	G	A	1958.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-8.760e+02;SOR=1.238;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1987,144,0
2	25314186	rs2918630	T	C	989.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-6.140e+02;SOR=0.818;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:1018,72,0
2	25316045	rs10495751	T	C	452.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.061;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.480;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-0.958;SB=-1.310e+02;SOR=1.186;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:481,0,491
2	25344464	rs2276597	G	A	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.24;ReadPosRankSum=0.217;SB=-9.732e-01;SOR=1.863;VQSLOD=6.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:160,0,295
2	25344710	.	C	A	669.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.165;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.234;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.25;ReadPosRankSum=1.292;SB=-3.370e+02;SOR=0.474;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,29:47:99:698,0,484
2	25359254	rs10202934	C	T	862.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.187;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=1.058;SB=0.00;SOR=1.038;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,26:45:99:891,0,646
2	25360196	rs116074763	G	A	1096.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.167;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.931;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.858;SB=-5.280e+02;SOR=0.510;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,44:76:99:1125,0,760
2	25362194	rs6718083	G	A	1027.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.6694;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-2.321e+02;SOR=2.899;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1056,78,0
2	25366380	rs3731633	T	A	325.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-4.176e+01;SOR=3.258;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:354,27,0
2	25368005	rs10188516	G	A	791.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-7.997e+01;SOR=3.912;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:820,60,0
2	25368030	rs10180231	T	C	672.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-8.297e+01;SOR=3.611;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:701,51,0
2	25374912	rs17046887	G	A	1060.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.783;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.190;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.712;SB=-5.940e+02;SOR=0.393;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,42:77:99:1089,0,924
2	25375105	rs3795955	T	C	147.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-1.321;SB=0.00;SOR=0.693;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:176,0,163
2	25377176	rs2164808	T	C	2686.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2166;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=-1.682e+03;SOR=0.878;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2715,202,0
2	25377329	rs2118404	C	T	827.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-7.797e+01;SOR=4.003;VQSLOD=6.79;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,23:23:66:856,66,0
2	25384705	rs6713396	T	C	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-0.285;SB=-4.176e+01;SOR=0.346;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:265,0,141
2	25463483	rs2289195	G	A	826.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.583;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.563;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=0.774;SB=-3.240e+02;SOR=0.399;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,27:51:99:855,0,764
2	25497684	rs67827921	A	AC	678.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.30;SB=-1.505e+02;SOR=2.448;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:716,45,0
2	25505793	rs72810068	T	C	119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=0.175;SB=-1.765e+00;SOR=1.609;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:148,0,200
2	25551692	rs12995245	C	T	843.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.08;SB=-3.477e+01;SOR=4.977;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:872,69,0
2	25602142	rs2304426	G	A	1771.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-6.140e+02;SOR=1.981;VQSLOD=5.64;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1800,132,0
2	25602310	rs2304427	C	T	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.007;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.656;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=0.548;SB=-1.460e+02;SOR=1.201;VQSLOD=7.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,16:51:99:465,0,999
2	25602450	rs2304428	A	G	645.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=0.00;SOR=5.784;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:674,51,0
2	25610107	.	G	A	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.55;ReadPosRankSum=0.951;SB=-4.076e+01;SOR=0.283;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:246,0,182
2	25650631	rs34648410	A	G	685.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.963;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=0.078;SB=-1.120e+02;SOR=0.743;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,23:33:99:714,0,278
2	25650668	.	C	CT	457.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.09;RPA=2,3;RU=T;ReadPosRankSum=-0.801;SB=-4.076e+01;SOR=1.179;STR;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,15:19:99:495,0,106
2	25655446	rs2292225	T	G	521.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=-4.076e+01;SOR=4.047;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:550,42,0
2	25656880	rs1395949	C	G	1158.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-4.770e+02;SOR=1.730;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1187,87,0
2	25875401	.	T	TAA,TA	507.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.776;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.43;MQ0=0;MQRankSum=0.000;QD=23.08;RPA=16,18,17;RU=A;ReadPosRankSum=-1.341;SB=-1.130e+02;SOR=1.445;STR;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,10,11:25:99:545,222,199,187,0,141
2	25973309	rs10178552	C	T	556.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.053;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.110;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=0.886;SB=-2.901e+01;SOR=2.160;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:585,0,438
2	25990640	rs17680828	T	C	1142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.495;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.052;SB=-3.080e+02;SOR=0.636;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,42:86:99:1171,0,1248
2	26082212	rs13425195	T	C	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.672;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.212;SB=-6.700e+01;SOR=1.508;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:279,0,244
2	26152793	rs3731640	G	A	911.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.782;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=6.984;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=-0.994;SB=-2.730e+02;SOR=0.180;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,31:57:99:940,0,699
2	26161226	rs11388254	C	CA	80.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;DB;DP=22;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.04;RPA=15,16;RU=A;ReadPosRankSum=-1.546;SB=-4.700e+01;SOR=0.330;STR;VQSLOD=4.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:22:99:118,0,252
2	26203678	rs1465878	T	C	2904.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3913;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-1.463e+03;SOR=1.076;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2933,217,0
2	26251361	rs4665809	A	G	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-3.670e+02;SOR=1.445;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:867,63,0
2	26321526	rs11678157	T	C	638.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-2.810e+02;SOR=1.127;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:667,51,0
2	26350136	rs2289022	G	T	1203.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-3.560e+02;SOR=2.242;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:93:1232,93,0
2	26357748	rs2243834	G	T	456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.13;SB=-8.097e+01;SOR=2.670;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:485,36,0
2	26399178	.	T	TTCCCCTCA	1288.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=1.104;QD=16.66;RPA=1,2;RU=TCCCCTCA;ReadPosRankSum=0.327;SB=-2.270e+02;SOR=0.941;STR;VQSLOD=2.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,14:30:99:1326,0,1473
2	26399214	rs4665830	G	A	1431.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-7.280e+02;SOR=1.345;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1460,105,0
2	26405985	rs10779956	A	G	1028.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-2.590e+02;SOR=2.376;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1057,78,0
2	26415093	rs74825771	A	C	747.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.638;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.178;HaplotypeScore=7.5326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.117;SB=-2.820e+02;SOR=0.473;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,30:58:99:776,0,807
2	26415429	rs5001914	A	G	516.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.45;SB=-3.677e+01;SOR=4.047;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:545,42,0
2	26416301	rs7582341	A	G	1651.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-6.180e+02;SOR=1.848;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1680,120,0
2	26417533	rs1865324	C	A	408.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-7.497e+01;SOR=2.833;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:437,33,0
2	26420708	rs13387855	T	G	1492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-6.970e+02;SOR=1.473;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1521,108,0
2	26420809	rs2289019	G	C	793.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-3.876e+01;SOR=4.712;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:822,60,0
2	26454996	rs7593175	A	G	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.228;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.146;SB=-1.410e+02;SOR=0.177;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:359,0,490
2	26500101	.	CT	C	138.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;DP=56;ExcessHet=3.0103;FS=3.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.65;RPA=22,21;RU=T;ReadPosRankSum=1.863;SB=-2.103e+01;SOR=1.550;STR;VQSLOD=4.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,14:56:99:176,0,433
2	26507331	.	C	CT	84.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.282;POSITIVE_TRAIN_SITE;QD=9.42;RPA=16,17;RU=T;ReadPosRankSum=-2.200;SB=0.00;SOR=2.093;STR;VQSLOD=2.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:12:20:122,0,20
2	26512957	rs1056471	G	C	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.106;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=1.144;SB=-6.400e+01;SOR=0.576;VQSLOD=7.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,10:30:99:264,0,583
2	26532491	rs2007556	G	T	983.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.997;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.869;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-0.148;SB=-5.030e+02;SOR=0.578;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,37:77:99:1012,0,1139
2	26532735	rs3856397	G	A	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.973;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=-0.356;SB=-1.370e+02;SOR=0.711;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,17:30:99:565,0,405
2	26533023	rs3851967	C	T	707.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=5.162;HaplotypeScore=2.5571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=-1.622;SB=-1.820e+02;SOR=1.512;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,29:70:99:736,0,1021
2	26534801	rs7568529	G	A	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.456;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.486;SB=-8.600e+01;SOR=1.609;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,15:34:99:480,0,558
2	26536299	rs11886746	C	G	1073.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.898;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.409;SB=-5.390e+02;SOR=0.927;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,43:76:99:1102,0,872
2	26536555	rs7566473	T	C	363.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.628;HaplotypeScore=1.7866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-0.816;SB=-1.400e+02;SOR=0.799;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:392,0,425
2	26536694	rs2052937	C	T	706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.195;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=1.469;SB=-3.240e+02;SOR=0.422;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,28:70:99:735,0,1266
2	26537499	rs10187359	A	C	1785.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-8.850e+02;SOR=1.278;VQSLOD=6.57;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1814,129,0
2	26587076	rs11674089	G	A	573.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-1.931e+02;SOR=1.981;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:602,45,0
2	26590084	rs6748996	T	G	3953.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-2.059e+03;SOR=0.966;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3982,292,0
2	26590118	rs6731447	C	T	3573.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-1.668e+03;SOR=1.362;VQSLOD=4.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3602,268,0
2	26607992	rs934280	T	C	2010.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-6.690e+02;SOR=1.942;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2039,147,0
2	26609469	rs7585892	G	A	1348.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;SB=-2.750e+02;SOR=2.670;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1377,102,0
2	26647277	rs7423300	T	G	1233.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-3.230e+02;SOR=2.242;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:96:1262,96,0
2	26652671	rs4356622	A	G	1123.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-2.720e+02;SOR=2.649;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1152,84,0
2	26667130	rs3795958	A	G	1369.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-4.120e+02;SOR=2.356;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1398,108,0
2	26667615	rs939820	T	C	4311.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1267;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-2.026e+03;SOR=1.195;VQSLOD=5.67;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4340,316,0
2	26671092	rs34461558	C	CA	163.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=-0.746;POSITIVE_TRAIN_SITE;QD=8.62;RPA=18,19;RU=A;ReadPosRankSum=1.198;SB=-2.110e+01;SOR=1.061;STR;VQSLOD=3.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:23:99:201,0,124
2	26671544	rs4072407	A	G	1862.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.39;SB=-1.206e+03;SOR=0.949;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1891,138,0
2	26676322	rs1402962	A	G	704.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.90;SB=-3.260e+02;SOR=1.127;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:733,54,0
2	26677303	rs2280515	G	T	362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.011;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-1.211;SB=-8.100e+01;SOR=1.765;VQSLOD=6.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,14:38:99:391,0,654
2	26677810	rs2280516	A	G	544.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.155e+02;SOR=2.712;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:573,45,0
2	26693967	rs2272072	C	T	230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.524;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.79;ReadPosRankSum=-0.643;SB=-7.200e+01;SOR=1.148;VQSLOD=6.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,10:34:99:259,0,638
2	26695143	rs6743467	A	G	512.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=0.00;SOR=5.549;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:541,45,0
2	26698682	rs6712188	G	T	1003.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.88;SB=-4.680e+02;SOR=1.547;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:78:1032,78,0
2	26699126	rs4335905	C	G	910.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-5.730e+02;SOR=0.892;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:66:939,66,0
2	26699855	rs2272069	G	C	918.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-4.120e+02;SOR=1.071;VQSLOD=5.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:69:947,69,0
2	26700700	rs4665855	G	A	1889.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.081e+03;SOR=0.899;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1918,138,0
2	26700819	rs55806442	TGG	T	1691.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;RPA=5,3;RU=G;SB=-6.470e+02;SOR=1.308;STR;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:39:99:1729,105,0
2	26700908	rs6749978	C	G	604.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.29;SB=-3.260e+02;SOR=1.426;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:45:633,45,0
2	26702057	rs10714255	GT	G	511.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;RPA=2,1;RU=T;SB=-4.776e+01;SOR=3.767;STR;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:549,39,0
2	26706642	rs4665328	T	C	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.08;SB=0.00;SOR=4.804;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:412,30,0
2	26717641	rs939814	A	G	766.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-3.200e+02;SOR=1.519;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:795,57,0
2	26724442	rs7589019	A	G	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.785;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=1.362;SB=-7.302e+01;SOR=0.914;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:363,0,150
2	26724725	rs6547079	T	G	592.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.194;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-1.617;SB=-2.620e+02;SOR=1.005;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,21:43:99:621,0,626
2	26726752	rs884390	G	A	662.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.458;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.466;SB=-3.420e+02;SOR=0.577;VQSLOD=9.71;culprit=SOR	GT:AD:DP:GQ:PL	0/1:20,26:46:99:691,0,491
2	26733500	rs939817	C	T	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.143;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-1.009;SB=-2.402e+01;SOR=1.646;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:269,0,367
2	26739247	rs7575020	T	A	262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.009;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.706;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-1.209;SB=-1.450e+02;SOR=0.148;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:291,0,285
2	26739423	rs11687696	T	C	495.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.027;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.984;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-0.117;SB=-1.860e+02;SOR=1.405;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:524,0,518
2	26741961	rs13031859	G	A	4649.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;SB=-1.543e+03;SOR=1.772;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4678,340,0
2	26750557	rs10865425	T	C	1482.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.32;SB=-2.840e+02;SOR=2.948;VQSLOD=2.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1511,114,0
2	26750645	rs1879760	G	A	3068.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-1.064e+03;SOR=1.896;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3097,229,0
2	26750769	rs1879761	G	A	1440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.853;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.674;HaplotypeScore=2.7880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-1.220;SB=-7.270e+02;SOR=0.784;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,60:124:99:1469,0,1810
2	26760509	rs74640183	C	T	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.820;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=-0.076;SB=-3.100e+01;SOR=1.329;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:353,0,305
2	26760593	rs116525289	G	A	538.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.765;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=0.018;SB=-1.890e+02;SOR=0.848;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,23:54:99:567,0,914
2	26760877	.	G	GA	142.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=0.736;QD=10.98;RPA=2,3;RU=A;ReadPosRankSum=0.691;SB=0.00;SOR=0.569;STR;VQSLOD=1.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:14:99:180,0,250
2	26760880	.	C	G	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.736;QD=13.14;ReadPosRankSum=0.552;SB=0.00;SOR=0.569;VQSLOD=2.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:199,0,213
2	26760886	rs80346263	T	G	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.528;SB=0.00;SOR=0.551;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:167,0,207
2	26794844	rs71399395	AT	A	500.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;RPA=3,2;RU=T;SB=0.00;SOR=5.283;STR;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:538,39,0
2	26798893	rs13002673	A	T	2968.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.82;SB=-1.929e+03;SOR=0.712;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2997,217,0
2	26799031	rs2272464	G	A	1286.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.89;SB=-2.750e+02;SOR=2.649;VQSLOD=4.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1315,99,0
2	26802392	rs2272467	A	T	2812.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-7.270e+02;SOR=2.557;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2841,214,0
2	26804122	rs744539	T	G	452.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.511;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.350;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-0.354;SB=-9.300e+01;SOR=1.904;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,19:42:99:481,0,573
2	26804143	rs744540	T	C	1509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-6.430e+02;SOR=1.562;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1538,111,0
2	26804218	rs935171	G	A	1899.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4437;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-1.134e+03;SOR=0.818;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1928,141,0
2	26804247	rs935172	T	C	1703.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-8.540e+02;SOR=1.302;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1732,132,0
2	26806803	rs2305000	T	C	543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.340;SB=-2.320e+02;SOR=0.473;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,22:42:99:572,0,516
2	26818006	rs1148962	T	C	4144.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-1.963e+03;SOR=1.353;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4173,304,0
2	26818021	rs1148963	C	T	4155.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3542;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-1.920e+03;SOR=1.179;VQSLOD=5.22;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4184,304,0
2	26916099	.	T	G	50.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;DP=10;Dels=0.00;ExcessHet=3.0103;FS=6.990;HaplotypeScore=4.4374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.08;ReadPosRankSum=0.204;SB=-5.150e-01;SOR=3.258;VQSLOD=4.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:79:79,0,169
2	26951449	rs1663002	G	A	915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-1.821e+02;SOR=2.468;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:944,72,0
2	27014980	rs12992046	T	C	921.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.935;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.575;SB=-5.050e+02;SOR=1.002;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,35:74:99:950,0,998
2	27015118	rs13014800	G	A	779.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.909;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.334;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQ0=0;MQRankSum=0.732;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=0.076;SB=-2.844e+02;SOR=0.125;VQSLOD=0.234;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,30:44:99:808,0,409
2	27015141	.	G	GC	827.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=0.630;QD=27.59;RPA=2,3;RU=C;ReadPosRankSum=-0.221;SB=-1.570e+02;SOR=0.836;STR;VQSLOD=2.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,23:32:99:865,0,205
2	27015903	rs2289017	T	C	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.785;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-0.553;SB=-1.340e+02;SOR=0.784;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:350,0,455
2	27015969	rs2289018	G	A	675.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.765;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-0.573;SB=-3.120e+02;SOR=0.495;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:704,0,686
2	27163044	rs3739085	T	C	2510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-1.154e+03;SOR=1.300;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2539,199,0
2	27164806	rs3820823	G	A	3262.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-1.405e+03;SOR=1.308;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3291,247,0
2	27169637	rs3835821	TC	T	2641.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-5.130e+02;SOR=2.910;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:61:99:2679,181,0
2	27169842	rs11126784	C	A	2479.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.976;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.39;ReadPosRankSum=1.140;SB=-8.400e+02;SOR=1.739;VQSLOD=4.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,78:80:99:2508,187,0
2	27246285	rs10865456	C	T	2878.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-1.695e+03;SOR=0.820;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2907,211,0
2	27249245	rs3754733	A	G	1482.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-5.920e+02;SOR=1.562;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1511,111,0
2	27259794	rs13021112	G	A	1969.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-7.800e+02;SOR=1.765;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1998,150,0
2	27261329	rs11690454	A	G	1277.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.50;SB=-2.351e+02;SOR=3.026;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1306,96,0
2	27262763	rs146244277	GGGA	G	5857.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.50;RPA=2,1;RU=GGA;SB=-1.734e+03;SOR=1.879;STR;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:109:99:5895,307,0
2	27263122	rs1866654	T	C	4123.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.864;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6641;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.01;ReadPosRankSum=1.251;SB=-2.213e+03;SOR=0.291;VQSLOD=2.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,132:133:99:4152,278,0
2	27276202	rs3806520	G	A	836.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-4.070e+02;SOR=1.460;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:63:865,63,0
2	27279416	rs2384570	A	G	1061.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-4.120e+02;SOR=1.819;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1090,84,0
2	27280092	rs6711384	T	A	1358.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.14;SB=-4.070e+02;SOR=2.247;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1387,105,0
2	27280127	rs6721395	G	A	2247.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-6.340e+02;SOR=2.338;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2276,172,0
2	27280460	rs7560144	A	G	1203.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-4.860e+02;SOR=1.788;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:87:1232,87,0
2	27290525	rs11681145	A	G	1696.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.76;SB=-8.200e+02;SOR=1.493;VQSLOD=4.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1725,129,0
2	27291661	rs7575465	G	A	2356.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=-6.350e+02;SOR=2.439;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2385,172,0
2	27292651	rs10865461	T	C	1605.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-9.300e+02;SOR=0.941;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1634,117,0
2	27293150	rs1053609	G	T	875.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.25;SB=-4.400e+02;SOR=1.402;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:66:904,66,0
2	27302165	rs2289360	T	C	1633.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-4.000e+02;SOR=2.701;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1662,132,0
2	27303755	rs2736976	A	G	983.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-3.220e+02;SOR=1.981;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1012,75,0
2	27307769	rs2304682	G	C	3024.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.631e+03;SOR=1.134;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3053,220,0
2	27315064	rs6754371	G	A	608.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=0.00;SOR=5.670;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:637,48,0
2	27319826	rs9677784	A	G	1184.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-6.330e+02;SOR=0.968;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1213,87,0
2	27321887	rs4665944	A	G	404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=0.00;SOR=5.136;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:433,36,0
2	27323372	rs73921452	T	C	827.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.401;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.880;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=1.677;SB=-4.410e+02;SOR=0.824;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,34:75:99:856,0,1064
2	27323468	rs4665371	A	C	1578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-6.100e+02;SOR=1.848;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1607,114,0
2	27324036	rs1057394	G	A	403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=0.00;SOR=4.977;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:432,33,0
2	27324724	rs2384571	G	C	4370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-2.024e+03;SOR=0.971;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,129:130:99:4399,331,0
2	27324751	.	G	T	4561.77	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.82;SB=-1.924e+03;SOR=1.154;VQSLOD=4.09;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4590,346,0
2	27351279	rs1866561	G	A	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-8.097e+01;SOR=2.833;VQSLOD=7.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:33:440,33,0
2	27351948	rs6715286	T	G	2284.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=-1.319e+03;SOR=0.874;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2313,166,0
2	27354173	rs11126874	C	A	738.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-1.563e+02;SOR=2.833;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:767,57,0
2	27355454	rs4665948	A	C	886.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.11;SB=-1.483e+02;SOR=3.098;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:69:915,69,0
2	27359887	rs11121	C	T	646.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.251;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.505;SB=-1.690e+02;SOR=0.180;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,24:39:99:675,0,475
2	27424496	rs1006898	G	A	2910.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.08;SB=-1.295e+03;SOR=1.244;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2939,223,0
2	27424636	rs1395	G	A	3801.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-2.218e+03;SOR=0.744;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3830,283,0
2	27426514	rs1275521	G	C	1087.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-2.750e+02;SOR=2.448;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1116,81,0
2	27426878	rs1275522	C	T	489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-8.297e+01;SOR=2.833;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:518,39,0
2	27428147	rs1298361	A	G	1201.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-1.235e+02;SOR=4.294;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1230,99,0
2	27428295	rs1275524	A	G	3497.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-2.205e+03;SOR=0.820;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3526,262,0
2	27428815	rs1275526	C	G	509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.12;SB=-8.197e+01;SOR=2.985;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:538,39,0
2	27428877	rs1275527	C	G	1141.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-3.520e+02;SOR=2.179;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1170,84,0
2	27430781	rs1275528	A	G	378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-7.697e+01;SOR=2.670;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:407,30,0
2	27435250	rs1275533	A	G	1134.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-4.760e+02;SOR=1.418;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1163,84,0
2	27435374	rs11608	G	A	436.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-1.911e+02;SOR=1.329;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:465,36,0
2	27440013	rs11306505	CT	C	344.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.52;RPA=6,5;RU=T;SB=-6.297e+01;SOR=2.833;STR;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:16:39:382,39,0
2	27440642	rs188327098	A	G	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.749;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=-0.147;SB=-1.770e+02;SOR=0.483;VQSLOD=9.38;culprit=SOR	GT:AD:DP:GQ:PL	0/1:13,17:30:99:565,0,379
2	27440785	rs1275536	C	T	2764.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-1.225e+03;SOR=1.402;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2793,202,0
2	27448171	rs72445551	C	CT	58.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=1.583;POSITIVE_TRAIN_SITE;QD=2.94;RPA=20,21;RU=T;ReadPosRankSum=1.529;SB=0.00;SOR=0.197;STR;VQSLOD=2.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:28:96:96,0,162
2	27463091	.	G	GA	139.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.33;RPA=13,14;RU=A;ReadPosRankSum=0.258;SB=-1.905e+01;SOR=0.264;STR;VQSLOD=5.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,11:43:99:177,0,589
2	27487135	rs186711987	T	C	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.731;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.12;ReadPosRankSum=-0.876;SB=0.00;SOR=0.141;VQSLOD=9.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,6:23:99:146,0,601
2	27497918	.	T	C	1360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.523;DP=100;Dels=0.00;ExcessHet=3.0103;FS=5.147;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.61;ReadPosRankSum=-1.455;SB=-7.690e+02;SOR=0.331;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,49:100:99:1389,0,1332
2	27522543	.	C	CCTATCTAT	886.74	PASS	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;RPA=10,12;RU=CTAT;SB=-2.060e+02;SOR=2.494;STR;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:23:29:924,29,0
2	27535311	.	T	TG	1632.73	PASS	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;RPA=2,3;RU=G;SB=-6.060e+02;SOR=1.387;STR;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:40:99:1670,117,0
2	27598097	rs4665972	T	C	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.07;ReadPosRankSum=1.325;SB=-5.150e-01;SOR=1.022;VQSLOD=7.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,5:25:99:130,0,638
2	27606098	rs2384629	A	G	1405.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.08;SB=-1.613e+02;SOR=4.021;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1434,108,0
2	27728777	rs2293572	C	G	1382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.641;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=9.057;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-1.605;SB=-1.900e+02;SOR=1.791;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,43:89:99:1411,0,1211
2	27729480	rs2293571	G	A	2517.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.059;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=4.477;HaplotypeScore=4.4059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.879;SB=-9.670e+02;SOR=1.054;VQSLOD=7.24;culprit=DP	GT:AD:DP:GQ:PL	0/1:89,91:180:99:2546,0,2314
2	27730940	rs1260326	T	C	550.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.202;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.250;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-0.470;SB=-3.130e+02;SOR=0.299;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,22:44:99:579,0,676
2	27789347	.	G	A	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.043;DP=43;Dels=0.00;ExcessHet=3.0103;FS=16.726;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.25;ReadPosRankSum=-0.547;SB=-2.511e+02;SOR=0.029;VQSLOD=3.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,21:43:99:469,0,751
2	27801403	rs1919125	C	G	444.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=9.857;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.17;ReadPosRankSum=0.015;SB=-1.810e+02;SOR=1.265;VQSLOD=6.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,20:62:99:473,0,1260
2	27801418	rs1919126	C	A	437.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.665;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.95;ReadPosRankSum=-1.182;SB=-2.830e+02;SOR=0.428;VQSLOD=7.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,20:63:99:466,0,1244
2	27801493	rs1919127	T	C	575.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.547;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=13.775;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.89;ReadPosRankSum=0.307;SB=-9.400e+01;SOR=2.235;VQSLOD=5.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:51,22:74:99:604,0,1461
2	27801759	rs1919128	A	G	1258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.309;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=7.616;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-1.882;SB=-7.550e+02;SOR=0.243;VQSLOD=6.62;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,45:81:99:1287,0,1037
2	27804432	rs28381983	T	C	1162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.324;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.585;HaplotypeScore=7.3971;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=1.558;SB=-5.490e+02;SOR=0.839;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,37:64:99:1191,0,576
2	27822721	rs67556120	TAGGCAG	T	2803.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.597;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=0.772;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=1.808;SB=-1.170e+03;SOR=0.732;VQSLOD=2.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,32:49:99:2841,0,1540
2	27830990	rs6547734	G	T	1026.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.592;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=-0.195;SB=-1.040e+02;SOR=0.760;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,34:49:99:1055,0,469
2	27838058	rs11127071	C	A	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.984;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.087;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=1.419;SB=-3.150e+02;SOR=0.528;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,22:49:99:552,0,663
2	27839107	rs6737921	T	C	1921.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.691;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.615;HaplotypeScore=3.4648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=0.663;SB=-1.239e+03;SOR=0.634;VQSLOD=7.59;culprit=DP	GT:AD:DP:GQ:PL	0/1:69,73:142:99:1950,0,1922
2	27851120	rs12615690	T	C	679.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.727;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.220;SB=0.00;SOR=0.798;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:708,0,603
2	27851918	rs3749147	G	A	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.741;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=6.368;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-1.586;SB=-9.732e-01;SOR=2.833;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:238,0,177
2	27852117	rs66672615	A	AGGTCTT	890.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.777;DB;DP=29;ExcessHet=3.0103;FS=12.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=0.067;SB=-1.460e+02;SOR=2.447;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,11:29:99:928,0,1615
2	27852118	rs58737572	A	C	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.064;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.480;SB=-8.200e+01;SOR=1.492;VQSLOD=5.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:28:99:304,0,489
2	27852637	rs6547738	A	G	569.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.697;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-0.900;SB=-1.730e+02;SOR=0.399;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,18:29:99:598,0,343
2	27854524	rs34502053	G	A	377.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.320;SB=0.00;SOR=0.990;VQSLOD=10.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:406,0,297
2	27855239	rs4666005	A	G	102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=-1.241;SB=0.00;SOR=0.307;VQSLOD=9.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:99:131,0,317
2	27857992	rs4666009	T	A	1019.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.424;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.145;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.348;SB=-5.910e+02;SOR=0.420;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,39:73:99:1048,0,933
2	27861707	rs11692692	G	A	416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.087;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=-0.099;SB=-1.390e+02;SOR=0.202;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:445,0,308
2	27887034	rs9678851	C	A	1387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.046;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-0.855;SB=-6.530e+02;SOR=0.715;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,56:109:99:1416,0,1593
2	27892023	rs2272406	A	T	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=8.817;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.19;ReadPosRankSum=-1.115;SB=-6.900e+01;SOR=0.052;VQSLOD=6.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:99:172,0,449
2	27994597	rs34796799	G	T	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.619;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=0.117;SB=-2.481e+02;SOR=0.112;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,17:25:99:460,0,188
2	27995781	rs3736594	A	C	378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=0.00;SOR=4.804;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:407,30,0
2	28066122	rs74446114	T	C	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.391;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-0.297;SB=-9.700e+01;SOR=0.941;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:490,0,615
2	28081344	rs147662293	C	T	1196.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.148;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.087;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-0.049;SB=-6.370e+02;SOR=1.033;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,48:85:99:1225,0,913
2	28239339	.	C	T	1141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.601;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.98;ReadPosRankSum=0.604;SB=-5.820e+02;SOR=0.903;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,43:104:99:1170,0,1612
2	28464290	rs114295720	C	T	1059.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.987;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.744;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.742;SB=-5.030e+02;SOR=0.929;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,41:92:99:1088,0,1193
2	28464435	rs6737817	T	C	417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.73;SB=-4.276e+01;SOR=3.442;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:446,33,0
2	28634790	rs12624279	G	A	766.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.960;HaplotypeScore=3.7198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-0.249;SB=-3.940e+02;SOR=0.499;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,28:68:99:795,0,1071
2	28718897	rs4665423	A	G	2422.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.12;SB=-1.306e+03;SOR=0.904;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2451,178,0
2	28748346	rs4666083	T	C	120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=0.564;SB=-1.765e+00;SOR=1.179;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:149,0,246
2	28748857	rs4666085	T	C	4287.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-1.973e+03;SOR=1.329;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4316,313,0
2	28748916	rs10181687	A	C	1189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.611;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=3.018;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=1.471;SB=-5.420e+02;SOR=0.363;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,47:95:99:1218,0,1372
2	28752498	rs6728486	T	C	1095.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-6.820e+02;SOR=0.693;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1124,81,0
2	28752555	rs4473343	T	C	987.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-6.450e+02;SOR=0.752;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:72:1016,72,0
2	28752727	rs6710800	C	G	305.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.80;SB=-1.235e+02;SOR=1.802;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:334,24,0
2	28761981	rs6753929	G	C	1351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.849;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.700;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.307;SB=-7.970e+02;SOR=0.588;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,53:117:99:1380,0,1760
2	28764452	rs13406540	C	T	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.054;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.691;SB=-1.765e+00;SOR=1.312;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:415,0,567
2	28764458	rs11127163	C	A	432.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-0.076;SB=-1.765e+00;SOR=1.329;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:461,0,587
2	28771452	rs56019402	CTA	C	558.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;DB;DP=26;ExcessHet=3.0103;FS=3.992;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=0.870;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.49;RPA=8,7;RU=TA;ReadPosRankSum=0.607;SB=-2.650e+02;SOR=0.160;STR;VQSLOD=0.354;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,16:26:99:596,0,384
2	28771624	rs11680168	T	G	806.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.220;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.090;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-1.623;SB=-4.970e+02;SOR=0.824;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,31:52:99:835,0,590
2	28771897	rs11680304	T	C	194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=1.213;SB=0.00;SOR=1.609;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:90:223,0,90
2	28785754	rs7560628	G	C	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.234;SB=-3.200e+01;SOR=1.609;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:388,0,152
2	28788428	rs34237604	AG	A	557.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;DB;DP=33;ExcessHet=3.0103;FS=4.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;RPA=2,1;RU=G;ReadPosRankSum=0.020;SB=-7.500e+01;SOR=1.675;STR;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:33:99:595,0,577
2	28800894	rs877832	C	T	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.755;SB=-3.300e+01;SOR=1.022;VQSLOD=10.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:238,0,170
2	28802186	rs6742836	A	G	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.65;ReadPosRankSum=-1.740;SB=-4.276e+01;SOR=0.818;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:83:300,0,83
2	28802355	rs12466173	G	C	1374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-6.000e+02;SOR=1.121;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1403,105,0
2	28802473	rs72863332	C	G	828.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.296;SB=-4.450e+02;SOR=0.818;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,30:59:99:857,0,789
2	28804835	rs5830085	GA	G	883.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.243;DB;DP=48;ExcessHet=3.0103;FS=2.532;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.64;RPA=12,11;RU=A;ReadPosRankSum=1.496;SB=-3.000e+02;SOR=0.237;STR;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:4,41:48:24:921,24,0
2	28805410	rs4666102	C	A	2072.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-9.110e+02;SOR=1.473;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2101,154,0
2	28805465	rs79974360	G	A	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.846;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.247;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.751;SB=-2.501e+01;SOR=1.781;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:453,0,707
2	28808539	rs13393932	G	A	761.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-1.603e+02;SOR=3.014;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:790,60,0
2	28812285	rs12468715	T	C	565.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-3.876e+01;SOR=4.174;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:594,45,0
2	28812982	rs4666105	C	T	1865.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-7.080e+02;SOR=1.727;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1894,138,0
2	28814033	rs11681826	A	G	1555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-0.986;SB=-7.840e+02;SOR=0.588;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,59:122:99:1584,0,1801
2	28814185	rs11127175	G	T	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.787;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=-1.092;SB=0.00;SOR=0.760;VQSLOD=9.54;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,15:29:99:503,0,481
2	28814349	rs115545620	T	C	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=-0.058;SB=-3.501e+01;SOR=1.179;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:324,0,157
2	28814460	rs113057936	T	A	625.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.121;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.310;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=0.712;SB=-3.390e+02;SOR=1.051;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,24:38:99:654,0,356
2	28814548	rs12464271	A	T	476.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.267;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-0.480;SB=-2.100e+02;SOR=1.367;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,20:45:99:505,0,682
2	28814683	rs11127176	T	C	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.387;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-0.555;SB=-3.100e+01;SOR=1.179;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:313,0,379
2	28816425	rs10176136	T	C	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.005;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=-0.624;SB=0.00;SOR=1.609;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:394,0,146
2	28816814	.	C	CTT	166.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.21;RPA=14,16;RU=T;ReadPosRankSum=-0.762;SB=-9.300e+01;SOR=0.859;STR;VQSLOD=7.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,12:35:99:204,0,482
2	28816948	rs4665429	C	T	610.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-0.236;SB=-3.970e+02;SOR=0.643;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:639,0,738
2	28821613	rs35746006	C	T	1196.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.964;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=3.662;HaplotypeScore=4.3582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=0.061;SB=-4.110e+02;SOR=1.064;VQSLOD=7.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:74,47:121:99:1225,0,1986
2	28821662	rs7557359	C	T	2674.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-3.750e+02;SOR=3.528;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2703,214,0
2	28823571	rs13029421	C	T	741.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.742;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-0.252;SB=-2.600e+02;SOR=0.610;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,29:60:99:770,0,875
2	28824793	rs7601771	C	G	2878.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-1.305e+03;SOR=1.538;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2907,208,0
2	28825607	rs67964454	G	A	616.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.700;SB=-2.370e+02;SOR=0.763;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:645,0,784
2	28826720	rs72793598	T	C	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=-0.318;SB=0.00;SOR=1.179;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:373,0,234
2	28827026	rs7573051	T	C	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.524;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=0.595;SB=-9.300e+01;SOR=1.085;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:371,0,624
2	28827625	rs34289907	C	T	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.286;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.667;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.550;SB=-1.070e+02;SOR=1.501;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,17:45:99:495,0,791
2	28827644	rs36116681	A	G	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.234;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=-1.095;SB=-1.600e+02;SOR=0.973;VQSLOD=7.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,18:47:99:438,0,841
2	28827912	rs13019586	G	A	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.629;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=-0.909;SB=-3.100e+01;SOR=1.880;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:338,0,232
2	28836890	rs72198065	T	TTC	914.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.339;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQ0=0;MQRankSum=1.919;QD=15.77;ReadPosRankSum=-0.809;SB=-4.640e+02;SOR=0.598;VQSLOD=1.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,21:59:99:952,0,1594
2	28840344	rs11891377	G	T	467.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.562;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=0.806;SB=-4.176e+01;SOR=0.446;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:496,0,293
2	28841021	rs1881256	G	A	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.425;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=0.473;SB=-1.000e+02;SOR=0.818;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:416,0,265
2	28843871	rs35800423	G	C	399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.164;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-0.333;SB=-2.440e+02;SOR=0.264;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:428,0,546
2	28843909	rs35166577	G	A	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-1.312;SB=-1.600e+02;SOR=0.223;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:340,0,418
2	28849473	.	T	C	320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-0.592;SB=-3.200e+01;SOR=1.071;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:349,0,328
2	28853352	rs6713038	C	T	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.836;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=1.034;SB=-1.765e+00;SOR=2.303;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:398,0,224
2	28853377	rs6731155	T	C	447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.476;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=8.073;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=0.167;SB=-9.732e-01;SOR=3.352;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:476,0,222
2	28855088	.	C	CTT	1186.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;DP=129;ExcessHet=3.0103;FS=8.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.99;RPA=13,15;RU=T;ReadPosRankSum=0.692;SB=-2.540e+02;SOR=1.648;STR;VQSLOD=2.93;culprit=DP	GT:AD:DP:GQ:PL	0/1:53,55:129:99:1224,0,1409
2	28855918	.	A	AG	4930.73	PASS	AC=2;AF=1.00;AN=2;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;RPA=2,3;RU=G;SB=-2.391e+03;SOR=0.762;STR;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,118:121:99:4968,355,0
2	28865760	rs2272387	T	C	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.569;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=-0.649;SB=-1.960e+02;SOR=0.660;VQSLOD=8.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,13:35:99:337,0,577
2	29001691	rs1128416	A	G	2708.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-9.890e+02;SOR=1.927;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2737,199,0
2	29041877	rs13009357	T	C	1102.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-3.590e+02;SOR=2.049;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1131,81,0
2	29045323	rs4436918	C	T	669.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.76;SB=-4.000e+02;SOR=1.220;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:51:698,51,0
2	29052256	rs12998251	T	C	1198.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=0.00;SOR=7.223;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1227,105,0
2	29052283	.	G	GT	106.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;RPA=14,15;RU=T;ReadPosRankSum=1.335;SB=0.00;SOR=2.494;STR;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:16:15:144,0,15
2	29083850	rs13025081	C	A	363.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=0.00;SOR=4.804;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:392,30,0
2	29087799	rs13030945	C	A	1430.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.55;SB=-1.513e+02;SOR=3.967;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1459,111,0
2	29135468	rs6715296	C	G	3005.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-1.254e+03;SOR=1.489;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3034,223,0
2	29145725	rs9653591	G	T	2617.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.0525;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SB=-1.524e+03;SOR=0.965;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2646,199,0
2	29152456	rs1140697	A	G	1614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-4.260e+02;SOR=2.352;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1643,120,0
2	29158613	rs70958225	CAAAAA	C	803.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.11;RPA=21,16;RU=A;ReadPosRankSum=0.000;SB=0.00;SOR=3.716;STR;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,18:26:29:841,29,0
2	29161010	rs4233731	G	A	1592.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-9.240e+02;SOR=0.776;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1621,120,0
2	29169612	rs3087649	T	C	831.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-4.760e+02;SOR=0.846;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:860,63,0
2	29222070	rs13009279	G	A	449.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.065;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=-0.151;SB=-1.510e+02;SOR=0.586;VQSLOD=8.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,19:55:99:478,0,1081
2	29222388	rs57018089	G	C	417.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.458;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=-0.985;SB=0.00;SOR=0.859;VQSLOD=9.67;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,13:26:99:446,0,380
2	29226498	rs12613325	G	A	1875.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-5.150e+02;SOR=2.428;VQSLOD=6.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1904,141,0
2	29226512	rs12623297	A	G	1579.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-2.540e+02;SOR=3.306;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1608,120,0
2	29226559	rs12619829	C	T	918.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-1.653e+02;SOR=3.334;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:75:947,75,0
2	29239942	rs11685375	T	G	779.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.403;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.600;HaplotypeScore=2.9326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=1.791;SB=-4.410e+02;SOR=0.349;VQSLOD=7.41;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,29:49:99:808,0,492
2	29240005	rs13409097	T	C	698.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.984;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.099;SB=-4.010e+02;SOR=0.761;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,26:62:99:727,0,988
2	29240060	rs11127202	A	G	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.681;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.627;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.670;SB=-1.680e+02;SOR=1.304;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,20:48:99:560,0,725
2	29240582	rs66482868	T	C	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.682;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.999;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.28;ReadPosRankSum=0.133;SB=-2.501e+01;SOR=2.093;VQSLOD=6.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,9:39:99:273,0,747
2	29240673	rs35166194	G	A	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.946;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=2.001;SB=-1.580e+02;SOR=0.619;VQSLOD=8.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,14:40:99:368,0,696
2	29240686	rs34261417	A	C	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.789;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.997;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=2.495;SB=-1.210e+02;SOR=1.270;VQSLOD=6.54;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,15:38:99:372,0,621
2	29240783	rs1109758	A	G	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.685;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=0.060;SB=-8.100e+01;SOR=1.230;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:297,0,367
2	29244889	rs62130298	A	C	410.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=0.404;SB=-3.677e+01;SOR=0.299;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:439,0,325
2	29247304	rs66715573	C	T	384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.810;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.465;SB=-1.020e+02;SOR=1.375;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:413,0,330
2	29249403	rs11692581	T	A	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.622;SB=-1.765e+00;SOR=1.609;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:202,0,208
2	29249415	rs11685625	C	T	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=-0.393;SB=-1.765e+00;SOR=2.030;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:268,0,206
2	29287708	rs10182566	C	T	66.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.68;ReadPosRankSum=1.465;SB=-9.732e-01;SOR=2.303;VQSLOD=6.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:95:95,0,151
2	29287926	rs72122505	C	CGCT	523.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;DB;DP=36;ExcessHet=3.0103;FS=5.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.89;RPA=3,4;RU=GCT;ReadPosRankSum=0.207;SB=-1.900e+02;SOR=1.112;STR;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,11:36:99:561,0,1055
2	29293733	rs78874550	T	G	1784.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.668;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=3.907;HaplotypeScore=2.7185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=-0.252;SB=-9.660e+02;SOR=0.803;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,61:99:99:1813,0,1004
2	29294629	rs34253433	C	T	1737.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.173;SB=-9.340e+02;SOR=0.752;VQSLOD=8.09;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,67:141:99:1766,0,2035
2	29294754	rs17744093	G	C	1862.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.418;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=1.288;HaplotypeScore=2.5655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=1.140;SB=-1.093e+03;SOR=0.686;VQSLOD=7.33;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,68:149:99:1891,0,2386
2	29295016	rs10200693	A	G	5074.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-2.889e+03;SOR=0.768;VQSLOD=5.25;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,164:164:99:5103,379,0
2	29295389	rs10166913	G	A	822.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.239;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.827;SB=-4.420e+02;SOR=0.521;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,30:59:99:851,0,746
2	29295676	rs13385188	G	A	3178.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-1.487e+03;SOR=1.202;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:100:99:3207,238,0
2	29295741	rs199764925	C	A	1447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.516;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=3.239;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-0.608;SB=-8.120e+02;SOR=0.807;VQSLOD=6.28;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,57:122:99:1476,0,1619
2	29296870	rs62132765	C	T	2231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.486;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.775;SB=-1.227e+03;SOR=0.717;VQSLOD=7.50;culprit=DP	GT:AD:DP:GQ:PL	0/1:68,80:148:99:2260,0,1778
2	29297068	rs35929540	C	T	1303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.643;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=3.681;HaplotypeScore=2.8644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=1.077;SB=-6.990e+02;SOR=0.645;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,49:101:99:1332,0,1360
2	29356669	rs3100232	A	G	1007.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=14.919;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-1.466;SB=-4.010e+02;SOR=0.056;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,39:64:99:1036,0,805
2	29356728	rs3768674	T	C	547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.217;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=0.593;SB=-3.500e+01;SOR=1.136;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:576,0,312
2	29366830	rs3213947	A	G	3155.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=-1.187e+03;SOR=1.659;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3184,232,0
2	29366875	rs34825217	C	CACAG	4427.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.80;RPA=1,2;RU=ACAG;SB=-1.173e+03;SOR=2.056;STR;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:68:99:4465,190,0
2	29383374	rs2305450	G	A	1042.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-3.910e+02;SOR=1.885;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1071,78,0
2	29386646	rs10200936	G	C	817.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.233;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-0.662;SB=-2.310e+02;SOR=0.554;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,32:73:99:846,0,1187
2	29404251	rs10178180	G	A	503.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.33;SB=0.00;SOR=5.421;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:532,42,0
2	29416025	rs372769158	C	CATTG	1798.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.09;RPA=1,2;RU=ATTG;ReadPosRankSum=-0.869;SB=-6.610e+02;SOR=0.557;STR;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,28:58:99:1836,0,1785
2	29416366	rs1881421	G	C	2376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.038;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=2.729;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=1.005;SB=-1.337e+03;SOR=0.499;VQSLOD=6.67;culprit=DP	GT:AD:DP:GQ:PL	0/1:88,78:166:99:2405,0,2500
2	29416481	rs1881420	T	C	1896.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;DB;DP=181;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-0.141;SB=-1.057e+03;SOR=0.681;VQSLOD=6.89;culprit=DP	GT:AD:DP:GQ:PL	0/1:107,73:181:99:1925,0,3149
2	29416572	rs1670283	T	C	5041.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7438;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-3.089e+03;SOR=0.718;VQSLOD=5.02;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,164:164:99:5070,367,0
2	29416946	rs12619135	T	C	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.558;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-0.702;SB=-1.765e+00;SOR=1.302;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:232,0,335
2	29419591	rs1670284	G	T	1008.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.589;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=11.197;HaplotypeScore=1.9828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.065;SB=-1.740e+02;SOR=2.050;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,35:78:99:1037,0,1229
2	29420315	rs3738870	C	T	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=11.090;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.319;SB=-2.151e+02;SOR=0.042;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:324,0,342
2	29429888	rs4666178	G	A	692.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.942;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-0.495;SB=-1.470e+02;SOR=1.897;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:721,0,579
2	29430942	rs3832036	GTC	G	658.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=1.226;POSITIVE_TRAIN_SITE;QD=15.32;RPA=5,4;RU=TC;ReadPosRankSum=0.025;SB=-3.900e+01;SOR=0.818;STR;VQSLOD=3.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,18:50:99:696,0,1080
2	29436633	rs1625283	G	T	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.75;SB=0.00;SOR=4.977;VQSLOD=8.32;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
2	29444076	rs1534545	G	T	533.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.311;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.288;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=1.496;SB=-2.310e+02;SOR=0.974;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,20:46:99:562,0,799
2	29444095	rs1569156	C	T	1674.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.50;SB=-9.810e+02;SOR=0.773;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1703,126,0
2	29445458	rs3795850	G	T	630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=0.371;SB=-1.720e+02;SOR=0.941;VQSLOD=9.47;culprit=SOR	GT:AD:DP:GQ:PL	0/1:15,22:37:99:659,0,377
2	29446184	rs2276550	C	G	2079.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.435;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=1.391;HaplotypeScore=1.9574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-1.151;SB=-9.540e+02;SOR=0.835;VQSLOD=7.16;culprit=DP	GT:AD:DP:GQ:PL	0/1:62,83:145:99:2108,0,1729
2	29449819	rs2293563	C	T	1189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.034;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.657;SB=-6.590e+02;SOR=0.689;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,49:103:99:1218,0,1361
2	29455267	rs2256740	A	G	977.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.418;SB=-5.110e+02;SOR=0.709;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,40:90:99:1006,0,1263
2	29498210	rs4589708	A	G	2716.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.80;SB=-1.170e+03;SOR=1.194;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2745,202,0
2	29519622	rs2272409	C	T	595.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.639;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.22;ReadPosRankSum=1.100;SB=-1.450e+02;SOR=0.418;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,21:31:99:624,0,321
2	29520085	rs4666194	G	A	601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=0.00;SOR=5.670;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:630,48,0
2	29525341	rs11127213	A	G	412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.40;SB=0.00;SOR=5.136;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:441,36,0
2	29525345	rs11127214	T	C	453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=0.00;SOR=5.283;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:482,36,0
2	29525654	rs11127215	C	T	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.067;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.224;SB=-3.100e+01;SOR=2.584;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:22:99:456,0,150
2	29541104	rs2276549	C	T	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.644;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.329;HaplotypeScore=2.9254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.018;SB=-2.340e+02;SOR=0.247;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:452,0,493
2	29543514	rs12151564	C	T	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.938;SB=0.00;SOR=0.693;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:211,0,195
2	29543663	rs2293564	T	C	519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.859;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-0.009;SB=-2.670e+02;SOR=0.656;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,20:53:99:548,0,818
2	29917940	rs2256376	C	G	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.170;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-0.912;SB=-1.930e+02;SOR=0.683;VQSLOD=7.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,14:34:99:334,0,529
2	29940529	rs2246745	A	T	845.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.979;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.840;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=0.767;SB=-3.510e+02;SOR=1.011;VQSLOD=7.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:55,33:88:99:874,0,1479
2	29940820	rs2270353	C	T	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.702;SB=-1.765e+00;SOR=1.863;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:202,0,175
2	30143499	rs4358080	G	C	668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-4.276e+01;SOR=4.407;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:697,51,0
2	30682360	rs829574	G	A	1554.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-4.910e+02;SOR=2.348;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1583,117,0
2	30682470	rs55723517	A	T	1330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=10.251;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-1.117;SB=-7.990e+02;SOR=0.416;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,57:95:99:1359,0,1088
2	30682630	rs829573	T	A	715.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.029;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=16.726;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=0.070;SB=-1.133e+01;SOR=3.797;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,22:44:99:744,0,552
2	30748373	rs13429099	T	G	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-0.525;SB=0.00;SOR=0.551;VQSLOD=10.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:168,0,207
2	30748733	rs766880	G	T	457.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=0.377;SB=-2.302e+01;SOR=0.970;VQSLOD=8.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,16:43:99:486,0,842
2	30775299	rs12053428	G	A	421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-1.205e+02;SOR=2.147;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:450,33,0
2	30791152	rs6749074	A	G	1084.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.55;SB=-2.001e+02;SOR=2.985;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1113,81,0
2	30828792	rs2248777	G	A	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=1.061;SB=-1.170e+02;SOR=0.784;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:350,0,371
2	30862842	rs150564049	AG	A	530.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.032;DB;DP=32;ExcessHet=3.0103;FS=7.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.950;SB=-9.397e+01;SOR=0.051;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:568,0,792
2	30862980	rs12466818	C	T	894.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=-1.435;SB=-4.500e+02;SOR=0.785;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,36:95:99:923,0,1549
2	30863092	rs12467646	C	T	1160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.796;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=3.686;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.738;SB=-7.720e+02;SOR=0.420;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,48:101:99:1189,0,1422
2	30863108	rs12471868	A	G	1296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.582;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.722;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-0.174;SB=-7.850e+02;SOR=0.507;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,48:90:99:1325,0,1220
2	30955176	rs2593433	A	G	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-0.263;SB=-4.276e+01;SOR=0.223;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:153,0,169
2	30955528	rs2276567	C	A	266.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.147;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-0.201;SB=-1.020e+02;SOR=0.446;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:295,0,171
2	30959262	rs509380	G	T	1867.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.926;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.763;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.227;SB=-5.140e+02;SOR=0.507;VQSLOD=7.60;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,69:141:99:1896,0,2120
2	30976058	rs2926304	C	T	1098.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.847;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.498;SB=-7.870e+02;SOR=0.634;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,47:81:99:1127,0,743
2	30977073	rs485100	G	A	762.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.695;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=1.290;SB=-3.050e+02;SOR=1.410;VQSLOD=7.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,31:77:99:791,0,1124
2	30977354	rs482384	C	T	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.304;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=-0.116;SB=0.00;SOR=1.127;VQSLOD=10.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:403,0,258
2	30980940	rs508405	C	T	508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.298;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=-0.748;SB=-2.081e+02;SOR=0.169;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,20:30:99:537,0,292
2	30985829	rs498686	C	T	357.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.18;SB=0.00;SOR=4.804;VQSLOD=8.60;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,10:10:30:386,30,0
2	30986989	rs579016	G	T	1550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-8.670e+02;SOR=0.866;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1579,117,0
2	31000370	rs6548033	G	C	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-0.023;SB=-5.900e+01;SOR=0.600;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,18:45:99:541,0,870
2	31009977	rs1915125	G	C	413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.608;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=0.667;SB=-3.500e+01;SOR=0.693;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:442,0,407
2	31010212	rs13021213	C	T	1260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.952;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=5.270;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-0.191;SB=-7.880e+02;SOR=0.335;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,50:96:99:1289,0,1161
2	31133939	rs2278079	G	C	2174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.454;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=2.072;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=1.080;SB=-1.156e+03;SOR=0.495;VQSLOD=7.33;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,81:155:99:2203,0,2179
2	31134106	rs2278078	T	A	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.023;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=1.062;SB=0.00;SOR=0.602;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:302,0,319
2	31135184	rs2288101	G	T	1664.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.887;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=5.867;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-0.135;SB=-4.800e+02;SOR=1.236;VQSLOD=7.37;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,62:133:99:1693,0,2031
2	31165345	rs11889636	T	C	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.429;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.545;SB=0.00;SOR=0.446;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:165,0,225
2	31178393	rs73923310	T	C	726.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.159;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=6.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=1.220;SB=-2.940e+02;SOR=0.158;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,27:53:99:755,0,813
2	31178818	rs2288100	C	T	1411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.756;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.686;HaplotypeScore=2.7777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.433;SB=-9.780e+02;SOR=0.570;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,59:118:99:1440,0,1458
2	31181139	rs2303325	C	T	619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.250;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.939;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=0.780;SB=-2.070e+02;SOR=0.318;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,25:57:99:648,0,962
2	31188957	rs889896	C	T	528.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.97;SB=-4.176e+01;SOR=4.047;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:557,42,0
2	31189236	rs2303324	G	A	841.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.965;HaplotypeScore=2.4131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-0.743;SB=-3.650e+02;SOR=0.996;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,33:68:99:870,0,894
2	31189304	rs2303323	T	C	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.758;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.591;SB=-9.400e+01;SOR=1.514;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,18:41:99:490,0,589
2	31189345	rs2303322	G	T	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-0.513;SB=-6.800e+01;SOR=0.321;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:370,0,450
2	31189401	rs2303321	A	G	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=1.693;SB=-1.765e+00;SOR=1.329;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:130,0,192
2	31348335	rs4020219	ACC	A	667.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.96;RPA=6,4;RU=C;SB=-9.697e+01;SOR=3.126;STR;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:18:45:705,45,0
2	31360680	rs2008535	T	A	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.337;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=0.847;SB=-2.777e+01;SOR=0.070;VQSLOD=7.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:191,0,407
2	31397332	rs12992405	A	C	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.412;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.298;SB=0.00;SOR=0.693;VQSLOD=10.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:172,0,167
2	31401290	rs4952052	A	C	3864.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-1.511e+03;SOR=1.713;VQSLOD=5.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3893,280,0
2	31410708	rs1822496	C	T	2252.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.52;SB=-1.408e+03;SOR=0.824;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2281,166,0
2	31414807	rs1562022	C	G	1548.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-7.320e+02;SOR=1.345;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1577,114,0
2	31415967	rs7591444	T	C	474.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-7.497e+01;SOR=3.126;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:503,39,0
2	31416213	rs11124248	T	C	1825.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-7.330e+02;SOR=1.733;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1854,132,0
2	31416305	rs11124249	C	T	863.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=0.00;SOR=6.358;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:892,69,0
2	31416309	rs11124250	A	G	757.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=0.00;SOR=6.184;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:786,60,0
2	31416317	rs12619774	C	G	731.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.74;SB=0.00;SOR=5.994;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:760,57,0
2	31420485	rs1443716	T	C	586.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-4.276e+01;SOR=4.407;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:615,51,0
2	31424885	rs11692905	C	T	1766.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-9.780e+02;SOR=0.808;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1795,132,0
2	31457817	rs2236170	T	C	804.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-2.800e+02;SOR=1.802;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:833,60,0
2	31467079	rs2295471	G	A	565.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=0.00;SOR=5.549;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:594,45,0
2	31467351	rs2295473	T	A	2269.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-9.400e+02;SOR=1.578;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2298,172,0
2	31483890	rs13028669	T	C	1549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;SB=-1.225e+02;SOR=4.804;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1578,129,0
2	31484334	rs654650	G	A	2600.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-1.154e+03;SOR=1.556;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2629,193,0
2	31488965	rs619002	C	T	331.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.65;SB=-1.165e+02;SOR=1.981;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:360,27,0
2	31562412	rs207440	C	T	1424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-7.940e+02;SOR=0.741;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:42:99:1453,108,0
2	31567743	rs566224	T	C	2019.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-8.180e+02;SOR=1.647;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2048,147,0
2	31569471	rs7599175	A	G	977.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-2.061e+02;SOR=2.985;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1006,75,0
2	31570376	rs1366813	T	C	2063.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-5.820e+02;SOR=2.194;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2092,154,0
2	31570626	rs4952083	C	T	668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-4.176e+01;SOR=4.615;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:697,54,0
2	31570631	rs4952084	A	G	736.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.29;SB=-4.276e+01;SOR=4.514;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:765,57,0
2	31571241	rs13415401	G	C	1742.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-1.133e+03;SOR=0.728;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1771,126,0
2	31571786	rs1884725	A	G	1983.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-1.026e+03;SOR=1.214;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2012,144,0
2	31572398	rs1429374	A	G	1122.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-1.175e+02;SOR=3.981;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:84:1151,84,0
2	31572482	.	T	TG	3016.73	PASS	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;RPA=4,5;RU=G;SB=-7.520e+02;SOR=2.303;STR;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:79:99:3054,235,0
2	31587142	rs6760292	A	G	404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=0.526;SB=-2.050e+02;SOR=0.641;VQSLOD=9.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,18:47:99:433,0,818
2	31587235	rs1018505	G	A	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.828;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-0.192;SB=-1.380e+02;SOR=0.250;VQSLOD=7.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,11:25:99:274,0,431
2	31588288	rs2365842	T	A	869.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.219;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=0.192;SB=-4.110e+02;SOR=0.715;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,36:79:99:898,0,1171
2	31588561	rs1429376	A	C	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-0.825;SB=0.00;SOR=1.085;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:212,0,124
2	31590917	rs17011368	T	C	1009.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.610;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=1.650;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-0.280;SB=-7.200e+02;SOR=0.530;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,44:95:99:1038,0,1327
2	31591494	rs200635805	C	T	696.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.064;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.94;ReadPosRankSum=-1.642;SB=-4.530e+02;SOR=0.540;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:725,0,534
2	31591517	rs201301387	C	T	618.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.964;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.38;ReadPosRankSum=-1.032;SB=-3.790e+02;SOR=0.515;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:647,0,547
2	31593265	rs17323225	T	C	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.365;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-1.014;SB=-1.060e+02;SOR=1.403;VQSLOD=7.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,12:31:99:331,0,512
2	31595395	rs45443498	G	A	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.356;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=0.114;SB=0.00;SOR=0.693;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:316,0,346
2	31595424	rs10171290	T	C	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=-1.063;SB=0.00;SOR=0.859;VQSLOD=10.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:213,0,159
2	31600146	rs10187719	T	C	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.747;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.388;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.087;SB=-4.276e+01;SOR=0.144;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:342,0,431
2	31609448	rs477626	A	C	1263.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-6.500e+02;SOR=1.096;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1292,93,0
2	31611029	rs2073316	G	A	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.585;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=1.664;SB=-1.330e+02;SOR=0.385;VQSLOD=7.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,11:29:99:297,0,507
2	31611054	rs45519736	A	T	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.374;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=-0.770;SB=-2.050e+02;SOR=0.976;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,20:34:99:593,0,366
2	31611367	rs206847	T	C	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-3.777e+01;SOR=3.611;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:406,33,0
2	31628675	rs45451209	A	G	602.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.469;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.826;SB=-1.980e+02;SOR=1.235;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,22:43:99:631,0,526
2	31628705	rs1366814	T	G	595.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.772;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.042;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.635;SB=-2.870e+02;SOR=0.848;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,24:53:99:624,0,787
2	31628746	rs206801	G	A	734.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.031;SB=-5.120e+02;SOR=0.796;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,33:58:99:763,0,684
2	31637363	rs2273452	G	A	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=0.398;SB=0.00;SOR=0.693;VQSLOD=10.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:170,0,150
2	31751042	rs28383083	T	A	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=1.188;SB=-1.765e+00;SOR=1.371;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:162,0,196
2	31751174	.	C	CATATATATATATATGA	3449.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.801;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.20;ReadPosRankSum=0.173;SB=-9.160e+02;SOR=0.784;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,20:49:99:3487,0,4651
2	31751175	rs192604242	G	A	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.432;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.327;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=1.276;SB=-1.670e+02;SOR=0.446;VQSLOD=7.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,15:44:99:418,0,795
2	31805880	rs61748121	A	AG	1026.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;RPA=2,3;RU=G;SB=-4.250e+02;SOR=1.136;STR;VQSLOD=2.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1064,75,0
2	31806031	rs632148	C	G	378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.50;SB=0.00;SOR=4.804;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:407,30,0
2	32312700	rs7561519	T	C	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.979;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=0.363;SB=-7.300e+01;SOR=0.693;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:386,0,227
2	32324072	rs7566162	T	C	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.072;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.232;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-0.906;SB=-5.150e-01;SOR=2.694;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:415,0,445
2	32361482	rs67290204	T	TC	370.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=0.615;SB=0.00;SOR=0.430;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:408,0,565
2	32369901	rs2365556	T	C	748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.71;SB=-3.876e+01;SOR=4.712;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:777,60,0
2	32418808	rs212751	T	A	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.500;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.231;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-0.309;SB=-1.060e+02;SOR=0.223;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:372,0,357
2	32429880	rs34353191	A	AT	117.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.61;RPA=19,20;RU=T;ReadPosRankSum=-0.740;SB=0.00;SOR=0.610;STR;VQSLOD=8.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,10:35:99:155,0,137
2	32434701	rs212685	A	G	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.212;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=1.845;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:480,0,406
2	32449877	rs2366742	T	A	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.604;HaplotypeScore=6.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.96;ReadPosRankSum=1.096;SB=-9.200e+01;SOR=1.179;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:475,0,458
2	32449878	rs199847843	T	A	449.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=6.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.06;ReadPosRankSum=1.338;SB=-8.800e+01;SOR=1.402;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:478,0,417
2	32449879	rs200950944	T	A	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=7.8292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.93;ReadPosRankSum=1.357;SB=-8.800e+01;SOR=1.402;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:474,0,396
2	32460348	rs212714	A	G	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.471;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=0.749;SB=-1.765e+00;SOR=0.836;VQSLOD=9.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:196,0,461
2	32466029	rs212721	A	G	693.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.269;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=6.106;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.664;SB=-4.210e+02;SOR=0.227;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,26:47:99:722,0,587
2	32475109	rs455060	G	A	1453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.704;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-0.222;SB=-7.400e+02;SOR=0.622;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,52:111:99:1482,0,1608
2	32476390	rs408813	T	G	1880.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.265;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=1.429;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.316;SB=-1.201e+03;SOR=0.571;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,69:126:99:1909,0,1500
2	32481793	rs71407438	AT	A	893.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;DB;DP=59;ExcessHet=3.0103;FS=5.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;RPA=3,2;RU=T;ReadPosRankSum=0.350;SB=-2.370e+02;SOR=1.476;STR;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,27:59:99:931,0,1066
2	32481795	rs59966205	T	A	736.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.638;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.550;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.449;SB=-2.200e+02;SOR=1.476;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,27:59:99:765,0,845
2	32655873	.	C	CT	89.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=1.402;QD=4.49;RPA=21,22;RU=T;ReadPosRankSum=0.991;SB=0.00;SOR=0.283;STR;VQSLOD=1.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:27:99:127,0,150
2	32661046	rs182470844	G	C	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.341;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.198;SB=-6.002e+01;SOR=0.250;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:338,0,495
2	32667058	rs55734616	C	A	450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=0.00;SOR=5.136;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:479,36,0
2	32667061	rs60955793	T	A	434.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=0.00;SOR=5.136;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:463,36,0
2	32667182	rs60197615	G	C	1492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-8.250e+02;SOR=1.094;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1521,108,0
2	32667562	rs2276592	A	G	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.865;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.425;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.46;ReadPosRankSum=-0.469;SB=-1.352e-01;SOR=2.303;VQSLOD=6.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,8:30:99:252,0,631
2	32706579	rs9646977	T	A	483.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=0.00;SOR=5.283;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:512,39,0
2	32712875	rs2366891	A	C	1607.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;SB=-3.080e+02;SOR=3.033;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1636,120,0
2	32724590	rs145668508	GTC	G	193.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.07;RPA=9,8;RU=TC;ReadPosRankSum=0.095;SB=-3.600e+01;SOR=0.358;STR;VQSLOD=8.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,7:24:99:231,0,686
2	32855615	rs2710623	A	G	760.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.29;SB=-8.197e+01;SOR=3.816;VQSLOD=3.28;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,21:21:57:789,57,0
2	32865521	rs1031261	G	C	2110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.071;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=0.565;HaplotypeScore=2.8621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.215;SB=-1.104e+03;SOR=0.617;VQSLOD=6.62;culprit=DP	GT:AD:DP:GQ:PL	0/1:101,79:180:99:2139,0,2793
2	32927863	rs2273659	G	A	476.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.206;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=-0.342;SB=-1.770e+02;SOR=0.461;VQSLOD=7.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,20:56:99:505,0,974
2	32928154	.	C	G	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.75;ReadPosRankSum=0.554;SB=-1.765e+00;SOR=1.609;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:207,0,207
2	32958838	rs3830967	CTT	C	1387.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.308;DB;DP=52;ExcessHet=3.0103;FS=8.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.21;ReadPosRankSum=0.784;SB=-3.930e+02;SOR=0.111;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,27:52:99:1425,0,1269
2	32959024	rs1551177	T	C	1454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.400;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.783;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.728;SB=-5.190e+02;SOR=1.024;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,50:99:99:1483,0,1170
2	32959075	rs3818266	G	A	985.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.444;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=6.949;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.769;SB=-3.060e+02;SOR=0.148;VQSLOD=6.47;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1014,0,951
2	32961540	rs12624166	A	G	378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.71;SB=0.00;SOR=4.804;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:407,30,0
2	32961745	rs10200333	T	A	3003.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.01;SB=-1.103e+03;SOR=1.688;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3032,232,0
2	32983299	rs71407470	TA	T	78.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.56;RPA=11,10;RU=A;ReadPosRankSum=-0.310;SB=0.00;SOR=0.693;STR;VQSLOD=8.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,6:12:99:116,0,134
2	33005238	rs6729463	T	C	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.035;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-0.204;SB=-6.600e+01;SOR=0.693;VQSLOD=10.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:198,0,244
2	33036324	rs3731578	G	A	858.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-1.791e+02;SOR=2.670;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:887,66,0
2	33045732	rs6543677	T	C	347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=0.00;SOR=4.804;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:376,30,0
2	33045867	.	G	GT	796.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;DP=78;ExcessHet=3.0103;FS=2.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.48;RPA=6,7;RU=T;ReadPosRankSum=0.487;SB=-1.180e+02;SOR=1.237;STR;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,33:78:99:834,0,1044
2	33127080	rs6716986	T	C	985.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.414;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=0.036;SB=-4.040e+02;SOR=0.802;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,37:63:99:1014,0,749
2	33127244	rs34735247	C	CT	3628.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-1.470e+03;SOR=1.179;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:74:99:3666,220,0
2	33150389	rs10865091	C	T	2015.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.01;SB=-6.760e+02;SOR=1.999;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2044,153,0
2	33150678	rs897507	C	T	3019.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4068;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-9.070e+02;SOR=2.327;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3048,229,0
2	33150720	rs897508	A	G	1851.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-3.610e+02;SOR=3.098;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1880,135,0
2	33172827	rs147166401	G	A	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.239;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.42;ReadPosRankSum=-0.024;SB=-1.510e+02;SOR=0.512;VQSLOD=8.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:28:99:236,0,450
2	33173703	rs4952319	G	A	704.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.239;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=-0.442;SB=-2.670e+02;SOR=0.598;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,26:44:99:733,0,451
2	33174072	rs150654	A	C	413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.120;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=0.286;SB=-1.205e+02;SOR=0.299;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:442,0,285
2	33335508	rs11124306	C	G	562.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5251;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=-3.300e+02;SOR=1.022;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:591,42,0
2	33335818	rs17012574	C	T	1572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=4.108;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-1.213;SB=-9.130e+02;SOR=0.536;VQSLOD=7.58;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,60:137:99:1601,0,2100
2	33359457	rs12620839	C	T	1144.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=-3.150e+02;SOR=2.303;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1173,84,0
2	33360126	rs1545550	A	G	743.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=0.00;SOR=5.994;VQSLOD=8.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:772,57,0
2	33414009	rs3922572	T	A	689.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.58;SB=-4.076e+01;SOR=4.407;VQSLOD=5.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:54:718,54,0
2	33525382	rs935996	A	C	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.339;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-0.378;SB=-1.765e+00;SOR=1.112;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:300,0,448
2	33526895	rs10495788	C	G	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.340;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.30;ReadPosRankSum=1.612;SB=-5.800e+01;SOR=0.947;VQSLOD=8.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,8:26:99:192,0,527
2	33540138	rs2276591	G	A	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.492;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.724;HaplotypeScore=2.6504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=2.205;SB=-4.076e+01;SOR=0.116;VQSLOD=6.96;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,14:34:99:411,0,667
2	33568113	rs10185623	A	G	984.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.645;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.111;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=1.757;SB=-2.080e+02;SOR=0.523;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,35:76:99:1013,0,1260
2	33568137	rs5024713	G	A	910.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.437;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-1.197;SB=-1.700e+02;SOR=0.730;VQSLOD=9.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,32:63:99:939,0,931
2	33568191	rs5024712	T	C	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.723;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=0.732;SB=-2.601e+01;SOR=0.610;VQSLOD=8.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:290,0,606
2	33585796	rs4422143	T	C	5347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-2.894e+03;SOR=0.880;VQSLOD=2.57;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5376,394,0
2	33586464	.	C	CT	596.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.13;RPA=14,15;RU=T;ReadPosRankSum=-0.027;SB=-1.761e+02;SOR=0.631;STR;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,30:43:53:578,0,53
2	33614128	.	G	A	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.438;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.34;ReadPosRankSum=-0.222;SB=0.00;SOR=1.071;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:589,0,322
2	33614187	rs642472	C	T	1874.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-1.851e+02;SOR=4.255;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1903,147,0
2	33622448	rs2367734	T	C	812.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.576;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=7.937;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=0.176;SB=-2.880e+02;SOR=0.125;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,30:52:99:841,0,700
2	33622475	rs12053346	T	C	506.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.291;HaplotypeScore=7.6442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=1.341;SB=-1.765e+00;SOR=1.911;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:535,0,486
2	33623288	rs626121	T	C	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.591;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=-1.057;SB=-1.765e+00;SOR=2.049;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:411,0,302
2	33623306	rs2034693	C	T	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.524;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=0.144;SB=-1.765e+00;SOR=1.739;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:405,0,382
2	33623387	rs624060	A	G	748.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.256;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.958;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=2.012;SB=-3.290e+02;SOR=0.844;VQSLOD=7.24;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:38,28:66:99:777,0,951
2	33623388	rs624058	T	C	749.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.826;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=1.646;SB=-3.640e+02;SOR=0.749;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,29:67:99:778,0,968
2	33744958	rs7597095	C	T	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.897;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-0.742;SB=-2.320e+02;SOR=0.232;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:386,0,359
2	33745024	rs369611073	G	A	511.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.843;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.12;ReadPosRankSum=1.282;SB=-2.350e+02;SOR=0.358;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:540,0,591
2	33745208	rs2305576	T	C	869.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.882;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.775;SB=-4.860e+02;SOR=0.848;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,39:77:99:898,0,1006
2	33745336	rs2305575	T	C	746.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-3.520e+02;SOR=0.990;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:775,57,0
2	33745402	rs2305574	A	G	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.876;SB=-6.500e+01;SOR=0.804;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:328,0,444
2	33748838	rs2305571	A	G	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.211;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.360;SB=0.00;SOR=0.693;VQSLOD=10.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:277,0,272
2	33764286	rs7592762	T	C	955.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.273;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.926;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.731;SB=-6.210e+02;SOR=0.724;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,39:74:99:984,0,927
2	33784135	rs12470399	A	G	398.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=8.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.070;SB=-1.810e+02;SOR=0.584;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:427,0,543
2	33784161	rs2278955	G	A	774.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.333;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=0.435;SB=-3.470e+02;SOR=1.189;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,28:41:99:803,0,321
2	33784371	rs12478596	G	A	166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.107;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=0.376;SB=-2.657e-01;SOR=2.780;VQSLOD=6.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,6:18:99:195,0,336
2	33784500	rs2278956	G	A	277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=-0.908;SB=-4.176e+01;SOR=0.446;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:306,0,150
2	33784801	rs12478742	G	A	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.504;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.927;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.47;ReadPosRankSum=0.642;SB=-2.402e+01;SOR=1.112;VQSLOD=6.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,8:25:99:215,0,556
2	33787976	rs10572554	CCTAA	C	1845.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.53;RPA=3,2;RU=CTAA;SB=-1.330e+02;SOR=4.479;STR;VQSLOD=5.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:37:87:1883,87,0
2	33820635	rs72785999	C	T	371.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.775;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.223;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.45;ReadPosRankSum=0.830;SB=-2.050e+02;SOR=0.845;VQSLOD=7.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,16:44:99:400,0,771
2	33952022	rs4670913	C	A	401.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=0.00;SOR=4.977;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:430,33,0
2	33952055	rs2290101	C	G	749.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6808;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.14;SB=0.00;SOR=6.091;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:778,60,0
2	33952413	rs4477896	T	C	2547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-1.134e+03;SOR=1.379;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2576,187,0
2	33952456	rs2367810	C	G	2774.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-1.762e+03;SOR=0.852;VQSLOD=4.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2803,208,0
2	33952621	rs11684598	G	A	2019.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-9.430e+02;SOR=1.143;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2048,153,0
2	34065280	.	T	C	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.86;MQ0=0;MQRankSum=-3.923;QD=7.80;ReadPosRankSum=-0.883;SB=-1.766e+00;SOR=2.215;VQSLOD=0.076;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:16:99:153,0,207
2	35696612	rs4670472	C	T	1414.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-6.690e+02;SOR=1.426;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1443,105,0
2	36605304	rs4670546	G	A	559.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.910;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-1.068;SB=-3.320e+02;SOR=0.549;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,25:50:99:588,0,648
2	36605585	rs4670548	A	G	648.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.722;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-1.118;SB=-2.720e+02;SOR=0.327;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,24:47:99:677,0,678
2	36691951	rs711252	A	C	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.475;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-1.022;SB=0.00;SOR=0.512;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:229,0,347
2	36704144	rs848547	C	T	907.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.232;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.839;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.741;SB=-5.330e+02;SOR=0.807;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,35:85:99:936,0,1229
2	36739553	rs848526	T	C	504.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=7.475;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-0.999;SB=-3.250e+02;SOR=0.148;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,23:40:99:533,0,457
2	36740643	rs2293254	C	G	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.032;SB=-7.301e+01;SOR=0.136;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:262,0,458
2	36756288	rs711247	T	C	866.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.495;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-0.694;SB=-6.110e+02;SOR=0.862;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,39:64:99:895,0,684
2	36775315	rs2270333	C	G	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=0.705;SB=-4.276e+01;SOR=1.085;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:229,0,125
2	36779144	rs10180760	T	G	384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.367;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.556;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.756;SB=-1.790e+02;SOR=0.357;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:413,0,480
2	36781401	rs1533946	T	C	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.776;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.429;SB=-2.720e+02;SOR=0.556;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,18:45:99:519,0,704
2	36782656	rs10178965	G	A	773.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=11.446;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=1.072;SB=-2.892e+02;SOR=0.069;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,31:51:99:802,0,676
2	36783127	rs10194100	T	C	720.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.690;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.1770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=-2.394;SB=-2.110e+02;SOR=0.693;VQSLOD=8.71;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:24,24:49:99:749,0,644
2	36783215	rs10181664	C	T	868.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.114;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=1.962;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=1.145;SB=-5.920e+02;SOR=0.458;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,36:71:99:897,0,898
2	36805676	rs2075226	A	G	1038.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-1.299;SB=-6.300e+02;SOR=0.759;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1067,0,901
2	36806021	rs2072534	G	A	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.648;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=-0.830;SB=-1.240e+02;SOR=0.643;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,22:40:99:634,0,556
2	36806051	rs2072533	A	G	384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.699;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.693;SB=-3.101e+01;SOR=0.693;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:413,0,409
2	36808350	rs848638	C	T	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=0.116;SB=0.00;SOR=0.392;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:221,0,433
2	36808732	rs848637	T	G	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.661;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=0.046;SB=-3.030e+02;SOR=0.327;VQSLOD=7.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,19:53:99:511,0,886
2	36810473	rs11691767	G	T	669.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.995;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=1.868;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.79;ReadPosRankSum=0.323;SB=-3.290e+02;SOR=0.919;VQSLOD=7.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,28:86:99:698,0,1449
2	36810586	rs14291	T	C	497.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.084;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.450;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.889;SB=-8.600e+01;SOR=1.056;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,20:48:99:526,0,807
2	36943338	rs4670597	C	G	505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=-4.276e+01;SOR=3.767;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:534,39,0
2	36943419	rs4670598	T	C	1783.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-6.470e+02;SOR=2.001;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1812,132,0
2	36994439	rs11124542	A	C	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=0.633;SB=-7.300e+01;SOR=1.148;VQSLOD=10.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:374,0,117
2	37000881	rs3770783	T	A	450.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.849;SB=-9.500e+01;SOR=1.402;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:479,0,389
2	37000915	rs3770782	C	A	574.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=1.855;SB=-2.650e+02;SOR=0.527;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,22:44:99:603,0,561
2	37001570	rs974964	C	T	873.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-3.990e+02;SOR=1.255;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:66:902,66,0
2	37028486	rs2072527	T	C	931.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.981;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.830;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=-0.438;SB=-5.780e+02;SOR=0.527;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,41:87:99:960,0,1179
2	37035934	rs2072526	A	G	1927.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=6.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.939;SB=-1.097e+03;SOR=0.354;VQSLOD=7.14;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,68:145:99:1956,0,2157
2	37035945	rs2072525	C	A	1704.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.038;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=2.278;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-0.011;SB=-8.000e+02;SOR=0.494;VQSLOD=7.78;culprit=DP	GT:AD:DP:GQ:PL	0/1:75,60:135:99:1733,0,2127
2	37041439	rs11901202	C	T	1040.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.741;HaplotypeScore=1.6809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=0.433;SB=-6.460e+02;SOR=0.579;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,42:106:99:1069,0,1832
2	37076498	rs62132520	A	C	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.934;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-0.838;SB=-1.020e+02;SOR=0.430;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:374,0,477
2	37076594	rs62132521	T	C	803.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.303;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=3.155;HaplotypeScore=3.4161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-1.256;SB=-5.190e+02;SOR=0.402;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,35:76:99:832,0,1206
2	37077015	rs723674	C	A	620.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;SB=-7.697e+01;SOR=3.500;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:649,48,0
2	37094945	rs2540923	A	G	832.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-2.830e+02;SOR=2.066;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:861,63,0
2	37095139	rs6752845	G	C	488.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=0.00;SOR=5.549;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:517,39,0
2	37230888	rs2706811	A	G	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=-0.133;SB=0.00;SOR=0.914;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:337,0,261
2	37232927	rs139942041	GT	G	625.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703;DB;DP=54;ExcessHet=3.0103;FS=4.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.03;RPA=6,5;RU=T;ReadPosRankSum=0.540;SB=-2.280e+02;SOR=0.191;STR;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,26:54:99:663,0,685
2	37232929	rs369798714	T	G	708.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.758;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=7.252;HaplotypeScore=4.9419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.13;ReadPosRankSum=1.536;SB=-2.760e+02;SOR=0.138;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,25:54:99:737,0,876
2	37241050	rs17020125	G	A	1269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=1.006;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=-1.240;SB=-8.460e+02;SOR=0.531;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,51:71:99:1298,0,571
2	37248015	rs17020136	T	C	519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.697;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=-0.539;SB=-1.090e+02;SOR=1.091;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,17:26:99:548,0,198
2	37255015	rs2540998	G	A	1443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=-1.195e+02;SOR=4.514;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1472,114,0
2	37259640	rs9309001	G	T	680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.04;SB=0.00;SOR=6.091;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:709,57,0
2	37264935	rs4670650	A	T	637.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=0.00;SOR=5.784;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:666,51,0
2	37276651	rs10495870	A	C	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-0.926;SB=0.00;SOR=0.368;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:159,0,281
2	37292890	rs11903252	T	G	796.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.381;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.369;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=-0.384;SB=-2.882e+02;SOR=0.101;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,29:44:99:825,0,414
2	37297329	rs4327218	C	G	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-1.041;SB=-1.090e+02;SOR=0.446;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:256,0,207
2	37302556	rs34545380	GA	G	1171.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.04;RPA=9,8;RU=A;SB=-1.731e+02;SOR=3.516;STR;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1209,135,0
2	37306343	rs6743906	G	A	2238.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-1.358e+03;SOR=0.750;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2267,169,0
2	37317869	rs4670654	C	T	567.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.185e+02;SOR=2.584;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:596,45,0
2	37323427	rs56020915	A	G	537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.082;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.323;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=1.461;SB=-2.000e+02;SOR=1.022;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,19:37:99:566,0,455
2	37342367	rs13411658	T	G	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=53.24;MQ0=0;MQRankSum=1.892;QD=9.71;ReadPosRankSum=2.548;SB=0.00;SOR=0.551;VQSLOD=1.13;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:135,0,207
2	37342456	rs4648231	T	C	728.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;SB=-2.221e+02;SOR=1.828;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:757,57,0
2	37362495	rs2307476	T	C	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.433;SB=0.00;SOR=0.693;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:241,0,215
2	37365640	rs2307484	G	A	611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.670;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.678;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.621;SB=-3.830e+02;SOR=0.293;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,26:47:99:640,0,560
2	37373982	rs34115903	A	AT	2436.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-1.145e+03;SOR=0.900;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:52:99:2474,154,0
2	37375932	rs2270414	G	A	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.454;SB=-1.603e+02;SOR=0.069;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:292,0,162
2	37376291	rs2254958	G	A	455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.192;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-0.551;SB=-2.300e+02;SOR=1.049;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:484,0,392
2	37406644	rs10182091	A	G	639.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-0.772;SB=-3.950e+02;SOR=0.763;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,28:66:99:668,0,1037
2	37406680	rs10205833	C	G	601.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.642;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-0.385;SB=-4.110e+02;SOR=0.312;VQSLOD=7.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,27:61:99:630,0,981
2	37406761	rs4459710	T	C	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.019;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=4.170;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-0.680;SB=-1.470e+02;SOR=0.184;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:378,0,533
2	37406807	rs2111630	A	G	194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=0.544;SB=0.00;SOR=0.368;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:223,0,379
2	37415496	rs11124566	G	C	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.862;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-0.131;SB=-5.900e+01;SOR=1.230;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:456,0,419
2	37447465	rs11124567	A	G	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.830;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.4611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.73;ReadPosRankSum=-0.333;SB=-6.000e+01;SOR=0.333;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:350,0,462
2	37456032	rs2098386	C	T	1044.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.377;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-0.274;SB=-3.690e+02;SOR=0.602;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,40:83:99:1073,0,1346
2	37458668	rs3213746	G	A	1790.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.526;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=1.112;SB=-8.220e+02;SOR=0.719;VQSLOD=9.16;culprit=DP	GT:AD:DP:GQ:PL	0/1:53,64:117:99:1819,0,1423
2	37459208	rs17020344	C	T	489.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.539;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.999;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=-0.284;SB=-2.391e+02;SOR=0.352;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,19:24:99:518,0,149
2	37474386	rs78879417	G	A	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.521;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.515;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=2.178;SB=-1.700e+02;SOR=0.392;VQSLOD=7.10;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,13:30:99:380,0,438
2	37486527	rs2714470	A	G	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.628;SB=0.00;SOR=0.446;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:169,0,236
2	37505105	rs10460527	T	G	2233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=10.164;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=2.937;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=0.201;SB=-1.213e+03;SOR=0.471;VQSLOD=7.67;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,77:151:99:2262,0,1985
2	37506939	rs3770761	A	G	2229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.043;DB;DP=179;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.822;SB=-1.294e+03;SOR=0.695;VQSLOD=7.26;culprit=DP	GT:AD:DP:GQ:PL	0/1:97,82:179:99:2258,0,2652
2	37513586	rs2287091	A	G	270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=1.202;SB=-3.501e+01;SOR=0.602;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:299,0,357
2	37516481	rs2302649	T	C	829.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.095;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-1.274;SB=-3.530e+02;SOR=0.653;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,33:67:99:858,0,850
2	37543371	rs6544066	A	G	918.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.210;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-1.044;SB=-1.350e+02;SOR=0.846;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,33:62:99:947,0,872
2	37579937	rs2230299	C	T	886.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.436;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.115;HaplotypeScore=2.5494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=1.364;SB=-2.300e+02;SOR=1.042;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,32:65:99:915,0,876
2	37579971	rs2255991	C	T	1114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.930;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.445;SB=-3.160e+02;SOR=0.887;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1143,0,1232
2	37586681	rs2302651	A	G	403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.860;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-0.355;SB=-1.000e+02;SOR=0.614;VQSLOD=9.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,16:39:99:432,0,684
2	37587040	rs3815555	C	A	1125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.861;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-0.178;SB=-3.720e+02;SOR=0.558;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,43:87:99:1154,0,1260
2	37587132	rs4670196	C	T	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-0.516;SB=0.00;SOR=0.593;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:250,0,311
2	37595696	rs1468816	A	C	812.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.885;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.080;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=1.633;SB=-4.070e+02;SOR=0.465;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,31:56:99:841,0,607
2	37599680	rs10490448	G	A	1270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.433;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-0.794;SB=-6.210e+02;SOR=0.752;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1299,0,1229
2	38177525	rs11687301	A	C	974.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-1.055e+02;SOR=3.767;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:1003,75,0
2	38178406	rs4670799	A	G	1348.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-7.680e+02;SOR=0.990;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1377,99,0
2	38179134	rs4670800	G	A	2487.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-1.502e+03;SOR=0.719;VQSLOD=6.48;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2516,187,0
2	38179414	rs72332368	CTG	C	2685.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.00;SB=-1.098e+03;SOR=1.157;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:56:99:2723,151,0
2	38298139	rs1800440	T	C	1224.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.627;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.794;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-1.983;SB=-6.540e+02;SOR=0.788;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,42:86:99:1253,0,1084
2	38298150	rs1056837	A	G	1014.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-1.187;SB=-6.010e+02;SOR=0.656;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,39:84:99:1043,0,1108
2	38298203	rs1056836	C	G	1035.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=1.795;SB=-6.420e+02;SOR=0.627;VQSLOD=7.83;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1064,0,1286
2	38526324	rs3816370	A	T	895.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.80;SB=-3.677e+01;SOR=4.977;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:924,69,0
2	38526547	rs3765052	G	A	979.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-7.797e+01;SOR=4.407;VQSLOD=6.72;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,28:28:75:1008,75,0
2	38536626	rs2305243	T	G	2616.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-1.258e+03;SOR=1.101;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2645,193,0
2	38537626	rs2305245	A	C	1870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.63;SB=-5.300e+02;SOR=2.215;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1899,138,0
2	38542573	rs12712583	T	C	324.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-3.377e+01;SOR=2.303;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:353,27,0
2	38830131	rs115855885	G	A	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.455;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-0.980;SB=-1.530e+02;SOR=0.481;VQSLOD=8.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:344,0,504
2	38893184	rs13425086	G	A	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-0.725;SB=0.00;SOR=0.495;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:217,0,322
2	38903022	rs17576472	T	A	803.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.335;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.957;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=0.526;SB=-3.260e+02;SOR=1.000;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,34:73:99:832,0,1109
2	38908271	.	C	CA	41.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.20;RPA=14,15;RU=A;ReadPosRankSum=0.556;SB=-1.779e+00;SOR=0.551;STR;VQSLOD=8.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:79:79,0,240
2	38916970	rs6741892	A	T	930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.929;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.466;SB=-2.930e+02;SOR=0.965;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,37:82:99:959,0,1214
2	38956947	rs2272445	A	G	1303.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-5.350e+02;SOR=1.609;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1332,99,0
2	38957055	rs3097715	T	C	427.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-7.697e+01;SOR=2.985;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:456,36,0
2	38973131	.	CA	C	177.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.41;RPA=11,10;RU=A;ReadPosRankSum=1.449;SB=-2.004e+01;SOR=1.061;STR;VQSLOD=7.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,11:25:99:215,0,273
2	38977371	rs3112183	C	T	1572.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-3.910e+02;SOR=2.655;VQSLOD=3.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1601,117,0
2	38977402	rs3134630	T	C	1210.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-1.583e+02;SOR=3.675;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:90:1239,90,0
2	39006603	rs3112201	T	G	2571.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-1.392e+03;SOR=1.218;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2600,184,0
2	39025043	.	G	GA	267.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.212;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.61;RPA=12,13;RU=A;ReadPosRankSum=-0.937;SB=0.00;SOR=3.767;STR;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:13:15:305,15,0
2	39025555	rs1530853	G	A	2331.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-1.129e+03;SOR=1.223;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2360,175,0
2	39025632	rs1530852	A	G	1308.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.66;SB=-2.001e+02;SOR=3.383;VQSLOD=3.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1337,99,0
2	39030074	rs13029406	C	T	2179.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-8.360e+02;SOR=1.609;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2208,169,0
2	39033778	rs376787497	G	T	659.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.545;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.958;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.00;ReadPosRankSum=0.344;SB=-3.110e+02;SOR=0.844;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,28:66:99:688,0,1058
2	39042639	rs3112138	G	A	1163.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-4.000e+02;SOR=1.949;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1192,90,0
2	39045885	rs10176932	C	T	445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=0.00;SOR=5.136;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:474,36,0
2	39050019	rs3112146	G	T	519.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.33;SB=-7.197e+01;SOR=2.985;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:548,42,0
2	39050061	rs34582261	AT	A	1168.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;RPA=3,2;RU=T;SB=-1.255e+02;SOR=3.841;STR;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1206,87,0
2	39050141	rs3770681	A	C	2150.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-6.650e+02;SOR=1.946;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2179,160,0
2	39065729	rs17494315	C	A	676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-1.245e+02;SOR=3.160;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:705,54,0
2	39075356	rs11124651	A	C	375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=0.00;SOR=4.804;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:404,30,0
2	39082344	rs7598922	T	C	5399.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9290;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-2.353e+03;SOR=1.405;VQSLOD=5.24;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,166:166:99:5428,391,0
2	39090696	rs3099999	T	C	2131.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-5.600e+02;SOR=2.602;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:67:99:2160,160,0
2	39117117	rs7565111	G	A	2557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-1.458e+03;SOR=0.908;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2586,190,0
2	39184964	rs10865145	A	G	432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-1.165e+02;SOR=2.448;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:461,39,0
2	39185048	rs422854	C	T	1366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-3.490e+02;SOR=2.303;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1395,105,0
2	39187190	rs6755527	T	C	1751.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-8.270e+02;SOR=0.963;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1780,132,0
2	39187519	rs958412	A	G	654.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.44;SB=-2.061e+02;SOR=1.863;VQSLOD=5.35;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:51:683,51,0
2	39198966	rs2305516	A	G	1520.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-4.430e+02;SOR=2.400;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1549,111,0
2	39199271	rs4670901	T	C	376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=0.00;SOR=4.977;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:405,33,0
2	39214821	rs2290445	A	C	859.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=0.00;SOR=6.273;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:888,66,0
2	39224351	rs1454223	G	T	922.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-7.797e+01;SOR=4.174;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:951,72,0
2	39224615	.	G	GT	1015.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.061;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.21;RPA=7,8;RU=T;ReadPosRankSum=1.734;SB=-2.610e+02;SOR=1.230;STR;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,35:37:80:1053,80,0
2	39233500	rs7577088	G	A	510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-4.176e+01;SOR=4.047;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:539,42,0
2	39239572	rs3796038	G	C	452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.44;SB=0.00;SOR=5.136;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:481,36,0
2	39262068	rs10153761	C	T	835.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-2.241e+02;SOR=2.303;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:864,66,0
2	39281730	rs997344	G	C	371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=0.00;SOR=4.804;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:400,30,0
2	39402978	rs35058572	A	AG	428.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=0.00;SOR=4.804;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:466,30,0
2	39406572	rs7566123	C	A	647.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-1.603e+02;SOR=2.531;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:676,51,0
2	39440727	rs10196407	G	C	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.021;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.281;SB=-7.800e+01;SOR=0.916;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:243,0,173
2	39452861	rs11124663	C	T	1549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-7.950e+02;SOR=1.094;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1578,114,0
2	39479122	rs3770678	G	C	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=-1.569;SB=0.00;SOR=1.609;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:94:248,0,94
2	39494469	rs10865149	C	G	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=0.176;SB=-4.276e+01;SOR=0.223;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:359,0,304
2	39499614	rs17023530	T	A	1383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.810;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=4.179;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.77;ReadPosRankSum=0.127;SB=-2.650e+02;SOR=1.445;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,43:70:99:1412,0,716
2	39526842	rs2111382	A	C	1837.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-5.570e+02;SOR=2.262;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1866,135,0
2	39542658	rs5830562	AT	A	69.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.524;POSITIVE_TRAIN_SITE;QD=6.97;RPA=12,11;RU=T;ReadPosRankSum=0.204;SB=-2.777e+01;SOR=0.307;STR;VQSLOD=3.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,6:12:84:107,0,84
2	39553271	rs3815594	A	G	619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.650;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=-0.023;SB=-3.280e+02;SOR=0.591;VQSLOD=9.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,27:73:99:648,0,1245
2	39558928	rs6760382	G	A	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.633;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=2.203;SB=-5.150e+02;SOR=0.627;VQSLOD=7.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:52,37:89:99:944,0,1436
2	39564620	rs1125839	C	A	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=1.935;SB=-2.000e+02;SOR=0.990;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:501,0,318
2	39570427	rs3732053	T	C	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=0.605;SB=-4.076e+01;SOR=0.072;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:237,0,343
2	39583446	rs8545	A	G	549.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.608;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.288;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-0.636;SB=-2.700e+02;SOR=1.289;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,22:45:99:578,0,595
2	39664010	rs113021812	C	T	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.992;SB=-5.800e+01;SOR=0.569;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:254,0,251
2	39944055	rs2540229	G	A	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=1.501;SB=0.00;SOR=0.330;VQSLOD=9.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:127,0,249
2	39982698	rs6544242	C	G	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.254;SB=0.00;SOR=2.147;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:85:367,0,85
2	39988703	rs3732122	T	C	522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.527;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.154;SB=0.00;SOR=0.906;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:551,0,417
2	39993167	rs4670959	T	C	1233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.772;HaplotypeScore=2.8735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.766;SB=-6.130e+02;SOR=0.869;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,48:96:99:1262,0,1238
2	39995885	rs7590912	C	T	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.556;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.966;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.050;SB=-2.540e+02;SOR=0.518;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:451,0,525
2	39995908	rs13400213	A	G	521.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.439;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.675;SB=-3.050e+02;SOR=0.602;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,20:39:99:550,0,616
2	40366301	rs2072532	G	A	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.182;SB=-1.600e+02;SOR=0.770;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:35:99:501,0,491
2	40392313	rs434725	G	C	631.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.19;SB=-8.197e+01;SOR=3.500;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:660,48,0
2	40402275	rs6734847	G	A	433.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-1.225e+02;SOR=2.147;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:462,36,0
2	40402646	rs10664274	A	ATG	535.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;RPA=8,9;RU=TG;SB=-4.776e+01;SOR=3.767;STR;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:17:39:573,39,0
2	40403104	rs106706	A	G	1365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.29;SB=-6.100e+02;SOR=1.402;VQSLOD=3.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1394,105,0
2	40404839	rs433572	C	T	1241.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-1.603e+02;SOR=3.912;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:96:1270,96,0
2	40564647	rs11893826	G	A	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.578;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.32;ReadPosRankSum=1.334;SB=-5.150e-01;SOR=1.714;VQSLOD=6.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,7:24:99:204,0,553
2	40564655	rs11893746	C	T	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.745;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.760;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.45;ReadPosRankSum=1.430;SB=-5.150e-01;SOR=1.714;VQSLOD=6.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,7:24:99:207,0,520
2	40655563	rs3838567	CCACA	C	2625.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.97;RPA=15,13;RU=CA;SB=-7.110e+02;SOR=2.110;STR;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:50:99:2663,138,0
2	42047517	rs12151414	G	C	860.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-5.360e+02;SOR=0.836;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:889,63,0
2	42275819	rs11897440	T	C	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-1.418;SB=-2.203e+01;SOR=1.981;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:211,0,251
2	42280300	rs34482969	G	A	43.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.423;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.19;ReadPosRankSum=1.136;SB=-5.150e-01;SOR=1.112;VQSLOD=7.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:72:72,0,493
2	42280358	rs35771566	C	T	292.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.963;HaplotypeScore=6.6255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-1.086;SB=-8.800e+01;SOR=1.561;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,10:23:99:321,0,376
2	42282632	rs13401037	A	T	557.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.658;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=-0.294;SB=-2.300e+02;SOR=1.189;VQSLOD=7.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,23:58:99:586,0,885
2	42282829	rs11902166	C	A	199.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.625;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.69;ReadPosRankSum=-0.284;SB=-5.900e+01;SOR=1.270;VQSLOD=7.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,9:23:99:228,0,401
2	42396722	rs7233	A	G	419.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-1.653e+02;SOR=1.609;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:448,33,0
2	42472894	rs17671409	G	A	791.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.644;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.899;SB=-8.600e+01;SOR=0.446;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,27:53:99:820,0,837
2	42491951	rs6735571	C	T	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.26;ReadPosRankSum=0.246;SB=-2.701e+01;SOR=0.602;VQSLOD=9.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:123,0,398
2	42510018	rs6736913	A	G	3313.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-8.390e+02;SOR=2.397;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:105:99:3342,247,0
2	42513659	rs3732195	C	G	529.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.55;SB=0.00;SOR=5.549;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:558,42,0
2	42515388	rs10202624	A	G	1097.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-6.420e+02;SOR=0.927;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1126,81,0
2	42515501	rs10179237	C	T	557.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.986;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=1.321;SB=-1.800e+02;SOR=0.582;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,20:30:99:586,0,239
2	42544821	rs7558501	C	T	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.433;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=1.341;SB=0.00;SOR=0.976;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:266,0,200
2	42552284	rs56315033	G	C	1412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-0.008;SB=-8.000e+02;SOR=0.670;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,55:118:99:1441,0,1820
2	42556690	rs56661877	G	A	381.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.580;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.913;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-1.820;SB=-2.350e+02;SOR=0.235;VQSLOD=7.10;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,16:38:99:410,0,651
2	42560975	rs7572231	A	G	1546.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.18;SB=-7.600e+02;SOR=1.287;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1575,120,0
2	42579743	rs56851715	T	C	723.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.439;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.778;SB=-4.150e+02;SOR=0.770;VQSLOD=9.26;culprit=SOR	GT:AD:DP:GQ:PL	0/1:30,25:55:99:752,0,739
2	42719847	rs371536042	T	TG	1039.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.762;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.99;RPA=3,4;RU=G;ReadPosRankSum=-1.177;SB=-3.310e+02;SOR=0.804;STR;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,27:29:66:1077,66,0
2	42719860	.	G	GC	1517.73	PASS	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;RPA=1,2;RU=C;SB=-5.970e+02;SOR=1.244;STR;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1555,102,0
2	42836516	rs6720277	A	G	568.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-4.076e+01;SOR=4.174;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:597,45,0
2	42836738	rs183604411	A	G	1102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-0.431;SB=-5.370e+02;SOR=0.603;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,42:78:99:1131,0,957
2	42922888	rs66547039	AT	A	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;RPA=13,12;RU=T;ReadPosRankSum=0.430;SB=0.00;SOR=2.670;STR;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,10:12:21:200,0,21
2	42931217	rs2304658	A	C	670.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.00;SB=0.00;SOR=5.892;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:699,54,0
2	42935961	rs4953577	C	T	1397.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.96;SB=-6.770e+02;SOR=1.519;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1426,102,0
2	42935979	rs4953578	C	T	1700.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;SB=-7.480e+02;SOR=1.532;VQSLOD=5.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1729,126,0
2	42990336	rs1992286	T	G	1059.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.220;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=9.559;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=1.125;SB=-4.810e+02;SOR=0.739;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,33:56:99:1088,0,683
2	42994484	rs2304661	G	T	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=0.920;SB=0.00;SOR=1.473;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:333,0,155
2	42996709	.	ATGTGTG	A	635.74	PASS	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;RPA=18,15;RU=TG;SB=-3.111e+02;SOR=0.693;STR;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:14:30:673,30,0
2	42996759	rs66779554	AAGAG	A	876.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;MQRankSum=0.189;POSITIVE_TRAIN_SITE;QD=28.58;RPA=8,6;RU=AG;ReadPosRankSum=-1.305;SB=-3.881e+02;SOR=0.412;STR;VQSLOD=3.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,15:17:43:914,43,0
2	43010130	rs34837864	AC	A	638.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=-2.378;SB=-2.860e+02;SOR=0.569;VQSLOD=8.25;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,20:33:99:676,0,525
2	43011169	rs4953660	G	T	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.479;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=0.216;SB=-5.200e+01;SOR=0.836;VQSLOD=8.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,13:38:99:380,0,733
2	43015612	rs3816181	G	T	1173.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-3.800e+02;SOR=1.949;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1202,87,0
2	43015719	rs3816183	T	C	2467.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.73;SB=-1.564e+03;SOR=0.761;VQSLOD=5.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2496,181,0
2	43015757	rs3816184	G	A	2375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.95;SB=-1.476e+03;SOR=0.922;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2404,175,0
2	43015814	rs62143190	G	A	742.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.633;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.456;SB=-3.100e+02;SOR=0.578;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,32:56:99:771,0,685
2	43015902	rs3816185	G	A	463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=0.00;SOR=5.136;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:492,36,0
2	43019730	rs2304656	A	G	781.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-2.221e+02;SOR=2.215;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:810,60,0
2	43024676	rs4953664	C	A	709.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-4.000e+02;SOR=0.784;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:738,54,0
2	43025207	rs4952939	T	C	396.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=-1.483e+02;SOR=1.765;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:425,30,0
2	43452183	rs7933	A	G	504.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.186;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-1.437;SB=-1.070e+02;SOR=0.498;VQSLOD=9.03;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,17:32:99:533,0,506
2	43514036	rs11900952	G	A	1230.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-5.360e+02;SOR=1.552;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1259,93,0
2	43754992	rs1491508	C	T	1654.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-5.740e+02;SOR=1.893;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1683,123,0
2	43778857	rs34461850	GA	G	894.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;MQRankSum=0.423;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.94;RPA=11,10;RU=A;ReadPosRankSum=1.379;SB=-8.551e+01;SOR=3.056;STR;VQSLOD=0.588;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,38:40:89:932,89,0
2	43787576	rs4337518	G	A	570.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-3.377e+01;SOR=4.174;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:599,45,0
2	43793725	rs1158411	G	A	1694.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-7.860e+02;SOR=1.179;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1723,129,0
2	43793963	.	T	TAA	513.73	PASS	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=30.22;RPA=16,18;RU=A;SB=-3.876e+01;SOR=4.294;STR;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:21:48:551,48,0
2	43797619	rs17031056	C	T	2478.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-1.357e+03;SOR=1.112;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2507,184,0
2	43797710	rs11904510	G	A	1358.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.46;SB=-1.165e+02;SOR=4.351;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1387,105,0
2	43798792	rs11884742	G	A	1749.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.77;SB=-8.310e+02;SOR=1.573;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1778,126,0
2	43800174	rs11898207	A	G	1796.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.55;SB=-4.350e+02;SOR=2.584;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1825,132,0
2	43801712	rs11899823	A	G	2514.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-1.318e+03;SOR=1.051;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2543,187,0
2	43802261	rs970175	C	A	681.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=0.00;SOR=5.994;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:710,54,0
2	43804229	rs13021894	T	C	2728.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.01;SB=-1.465e+03;SOR=1.055;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2757,199,0
2	43817950	rs35899859	CT	C	1550.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;RPA=7,6;RU=T;SB=-5.250e+02;SOR=1.567;STR;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:57:99:1588,162,0
2	43871779	rs77006940	A	T	928.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.551;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.594;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=-1.906;SB=-9.400e+01;SOR=1.199;VQSLOD=7.41;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,30:56:99:957,0,721
2	43871983	rs12105773	T	C	1927.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-6.090e+02;SOR=2.119;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1956,144,0
2	43902511	rs755862	G	C	2093.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-8.240e+02;SOR=1.716;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2122,154,0
2	43903066	rs3828297	A	G	2492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-1.391e+03;SOR=0.887;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2521,193,0
2	43903262	rs74589926	C	A	1474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.026;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-0.650;SB=-8.330e+02;SOR=0.617;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,57:104:99:1503,0,1251
2	43903354	rs4952675	T	C	1416.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.050;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=2.457;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-0.214;SB=-6.760e+02;SOR=0.951;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,49:112:99:1445,0,1702
2	43903483	rs4952995	T	C	1354.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-2.061e+02;SOR=3.664;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1383,111,0
2	43921489	rs12616572	A	T	499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-7.697e+01;SOR=3.126;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:528,39,0
2	43924171	rs10211617	T	A	339.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=4.804;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:368,30,0
2	43926943	rs7606783	T	A	3091.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-1.424e+03;SOR=1.255;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3120,232,0
2	43927538	rs17031297	C	A	766.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.857;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-0.764;SB=-4.350e+02;SOR=0.657;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:56:99:795,0,727
2	43927568	rs17031299	C	T	771.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.167;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.208;SB=-3.630e+02;SOR=0.818;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,28:54:99:800,0,818
2	43927831	rs113885926	G	A	154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-0.431;SB=-7.101e+01;SOR=1.022;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:65:183,0,65
2	43931055	rs10530805	CTTTTT	C	375.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=1.115;POSITIVE_TRAIN_SITE;QD=13.26;RPA=25,20;RU=T;ReadPosRankSum=0.943;SB=-5.633e+01;SOR=0.582;STR;VQSLOD=3.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:18:99:413,0,294
2	43931176	rs4953002	T	C	738.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.260;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.399;HaplotypeScore=12.4265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.681;SB=-4.280e+02;SOR=0.811;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,30:70:99:767,0,1026
2	43931321	rs4953003	G	A	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.313;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-0.104;SB=-3.000e+01;SOR=0.871;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:335,0,457
2	43937500	rs17414174	T	C	540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.231;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=2.064;SB=-2.610e+02;SOR=0.556;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,18:45:99:569,0,782
2	43939525	rs13028613	A	G	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=5.968;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=1.508;SB=-1.900e+02;SOR=1.609;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,23:53:99:610,0,860
2	43947760	rs10206389	T	C	543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-0.309;SB=-3.320e+02;SOR=0.770;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,24:47:99:572,0,569
2	43953664	rs7574334	A	G	934.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-8.297e+01;SOR=4.174;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:963,72,0
2	43956667	rs61046487	G	A	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.233;SB=0.00;SOR=1.022;VQSLOD=10.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:224,0,163
2	43965705	rs28646121	T	C	399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.542;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.413;SB=-8.297e+01;SOR=0.324;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,14:20:99:428,0,165
2	43968167	rs2278358	G	A	938.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-0.327;SB=-6.070e+02;SOR=0.693;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,36:72:99:967,0,997
2	43971292	rs12151633	C	T	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.121;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=-0.957;SB=0.00;SOR=0.293;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:184,0,388
2	43985940	rs7570252	C	A	519.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=0.00;SOR=5.421;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:548,42,0
2	43991310	rs10205936	C	T	755.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.90;SB=0.00;SOR=6.091;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:784,60,0
2	43991357	rs7565517	A	C	1498.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-7.997e+01;SOR=5.084;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1527,111,0
2	44001139	rs17031488	C	T	448.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.534;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=1.416;SB=-1.270e+02;SOR=0.352;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,16:44:99:477,0,948
2	44004010	rs2288709	T	C	1790.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-9.410e+02;SOR=1.217;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1819,132,0
2	44004099	rs17031494	T	G	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-1.653;SB=-3.001e+01;SOR=0.874;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:388,0,322
2	44010620	rs3815995	G	A	919.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-5.190e+02;SOR=1.044;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:69:948,69,0
2	44010861	rs2288708	C	G	255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.695;SB=-2.901e+01;SOR=1.508;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:284,0,250
2	44010887	rs2288707	G	T	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=-0.984;SB=0.00;SOR=1.445;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:272,0,129
2	44014301	rs3765000	A	G	657.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.440;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.361;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=-0.114;SB=-1.350e+02;SOR=1.002;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,25:46:99:686,0,504
2	44016885	rs3815994	C	G	1245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.945;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.808;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.149;SB=-4.370e+02;SOR=0.806;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,44:100:99:1274,0,1471
2	44019799	rs13420319	G	A	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.965;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-0.700;SB=-2.660e+02;SOR=0.610;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,19:44:99:438,0,668
2	44019930	rs10199777	C	T	526.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.855;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-0.548;SB=-3.130e+02;SOR=0.800;VQSLOD=7.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,23:53:99:555,0,813
2	44019936	rs10199778	C	T	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.993;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.347;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-1.024;SB=-3.090e+02;SOR=0.839;VQSLOD=7.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,23:54:99:560,0,848
2	44021826	rs9309107	T	A	908.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-1.931e+02;SOR=2.833;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:937,69,0
2	44022970	rs1025447	T	C	610.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.584;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=7.623;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-0.451;SB=-1.500e+02;SOR=0.090;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,23:50:99:639,0,903
2	44027948	rs3792013	G	A	637.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.379;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.927;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=-0.479;SB=-2.461e+02;SOR=0.275;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,24:32:99:666,0,211
2	44028013	rs11556157	A	T	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.814;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=0.201;SB=-9.800e+01;SOR=1.302;VQSLOD=7.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,15:50:99:332,0,1128
2	44028180	rs13432783	C	T	622.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.063;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.224;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=-0.735;SB=-1.250e+02;SOR=1.646;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,22:40:99:651,0,481
2	44032037	.	T	TA	138.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.94;RPA=13,14;RU=A;ReadPosRankSum=0.494;SB=-7.100e+01;SOR=0.473;STR;VQSLOD=9.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:21:99:176,0,212
2	44032084	rs2116547	G	C	478.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.793;HaplotypeScore=3.6098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-1.712;SB=-6.400e+01;SOR=1.329;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:507,0,597
2	44032189	rs10177630	C	G	1031.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-0.978;SB=-4.870e+02;SOR=0.708;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1060,0,1068
2	44036689	rs4953018	A	G	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.829;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=0.000;SB=0.00;SOR=0.512;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:227,0,344
2	44036800	rs4952683	A	G	561.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-1.409;SB=-2.520e+02;SOR=0.582;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:590,0,798
2	44036913	rs8302	T	C	790.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.394;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.349;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=2.318;SB=-3.490e+02;SOR=0.286;VQSLOD=7.02;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,28:50:99:819,0,641
2	44036922	rs10186552	T	C	524.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.276;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.707;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-2.268;SB=-9.100e+01;SOR=1.171;VQSLOD=7.62;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,21:48:99:553,0,779
2	44040401	rs6720173	G	C	799.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.795;HaplotypeScore=5.7979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=0.146;SB=-4.410e+02;SOR=0.871;VQSLOD=6.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:68,34:102:99:828,0,1919
2	44051117	.	A	C	989.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.119;DP=83;Dels=0.00;ExcessHet=3.0103;FS=3.034;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.92;ReadPosRankSum=0.041;SB=-5.120e+02;SOR=0.431;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,40:83:99:1018,0,1249
2	44066174	rs3806471	T	G	975.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-2.061e+02;SOR=2.670;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:75:1004,75,0
2	44071625	rs4148209	C	A	2694.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-1.693e+03;SOR=0.738;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2723,202,0
2	44071639	rs4148210	C	T	2943.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-1.757e+03;SOR=0.758;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2972,220,0
2	44071743	rs4148211	A	G	2021.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-7.830e+02;SOR=1.765;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2050,147,0
2	44071833	rs4148212	A	C	731.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.85;SB=-4.176e+01;SOR=4.712;VQSLOD=5.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:760,57,0
2	44071852	rs4148213	G	C	722.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.73;SB=0.00;SOR=5.994;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:751,57,0
2	44079004	rs4148214	T	C	1464.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-4.176e+01;SOR=5.892;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1493,111,0
2	44101214	rs10709506	CA	C	1465.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-4.776e+01;SOR=5.610;VQSLOD=6.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1503,99,0
2	44101394	rs4953027	A	G	376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.11;SB=-3.976e+01;SOR=3.258;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:405,30,0
2	44101430	rs4952689	T	G	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.564;SB=0.00;SOR=0.473;VQSLOD=10.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:199,0,272
2	44101537	rs4148227	A	AT	1397.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.39;SB=-5.770e+02;SOR=1.085;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:48:99:1435,139,0
2	44101538	rs28517482	C	T	1534.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=44.8454;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-7.530e+02;SOR=1.179;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1563,114,0
2	44101649	.	G	GCC,GC	1635.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;RPA=6,8,7;RU=C;SB=-4.790e+02;SOR=1.845;STR;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,24,17:46:99:1673,568,477,871,0,754
2	44102235	rs4148220	T	C	606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.195;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.261;SB=-3.400e+02;SOR=0.450;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,26:60:99:635,0,910
2	44102634	rs4148222	C	T	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.116;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=0.956;SB=-2.070e+02;SOR=0.368;VQSLOD=7.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,14:37:99:326,0,672
2	44104925	rs6544718	T	C	4867.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-2.652e+03;SOR=1.054;VQSLOD=5.85;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4896,352,0
2	44116836	rs2955280	C	T	1952.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=-7.580e+02;SOR=1.536;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1981,150,0
2	44117578	rs59645716	C	T	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-0.272;SB=0.00;SOR=0.368;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,7:19:99:215,0,349
2	44123672	rs3839036	TC	T	1150.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-1.365e+02;SOR=3.611;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1188,78,0
2	44123759	rs3795859	G	A	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.078;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.50;ReadPosRankSum=1.171;SB=-1.800e+02;SOR=0.861;VQSLOD=8.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,17:52:99:418,0,913
2	44145374	rs7568481	G	T	2795.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-1.509e+03;SOR=0.954;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2824,214,0
2	44152180	rs4952694	G	A	1456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.49;SB=-8.720e+02;SOR=0.808;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1485,108,0
2	44172444	rs28394191	A	C	2627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.400e+03;SOR=1.022;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2656,193,0
2	44173422	rs7594526	T	G	695.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-2.750e+02;SOR=1.802;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:724,54,0
2	44201376	rs4953042	T	C	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.904;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.930;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=0.866;SB=-1.750e+02;SOR=1.432;VQSLOD=7.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,20:63:99:615,0,1230
2	44502788	rs3738985	A	C	2709.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-1.607e+03;SOR=0.843;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2738,196,0
2	44512971	rs3768919	G	A	1247.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2683;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-4.770e+02;SOR=1.670;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:96:1276,96,0
2	44531484	rs3738984	C	T	861.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.14;SB=-1.205e+02;SOR=3.611;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:69:890,69,0
2	44545234	rs11348872	GT	G	190.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=15.89;RPA=15,14;RU=T;SB=-1.031e+02;SOR=1.022;STR;VQSLOD=3.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:34:228,34,0
2	44547574	rs698761	G	A	3391.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SB=-1.248e+03;SOR=1.586;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3420,259,0
2	44547909	rs8886	T	C	541.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-8.097e+01;SOR=3.383;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:570,45,0
2	44548613	rs2241871	T	C	1658.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-5.510e+02;SOR=1.981;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1687,120,0
2	44549016	.	G	C	1048.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.131;HaplotypeScore=1.3123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.62;ReadPosRankSum=1.005;SB=-4.130e+02;SOR=0.389;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1077,0,1104
2	44550290	rs2053454	A	G	326.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=0.00;SOR=4.804;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:355,30,0
2	44556298	rs2033951	T	C	1008.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-1.513e+02;SOR=2.985;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1037,75,0
2	44565447	rs2289463	A	T	836.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-1.533e+02;SOR=3.014;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:865,66,0
2	44569474	rs2304769	G	A	796.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-4.076e+01;SOR=4.712;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:825,63,0
2	44569700	rs61004197	AAAT	A	2278.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;RPA=2,1;RU=AAT;SB=-5.730e+02;SOR=2.147;STR;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:46:99:2316,129,0
2	44569739	rs11421998	T	TA	152.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;DB;DP=37;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.66;RPA=15,16;RU=A;ReadPosRankSum=1.110;SB=-9.733e-01;SOR=1.911;STR;VQSLOD=4.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,11:37:99:190,0,283
2	44570776	rs17580226	C	T	1904.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=-4.380e+02;SOR=2.683;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1933,144,0
2	44570804	rs12053381	C	A	2315.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-6.800e+02;SOR=2.139;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2344,178,0
2	44573624	rs698763	G	A	730.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-7.597e+01;SOR=3.716;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:759,57,0
2	44573658	rs698764	T	C	450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=0.00;SOR=5.136;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:479,36,0
2	44617324	rs1085486	T	A	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-2.810e+02;SOR=2.147;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:867,63,0
2	44683597	rs138373258	A	C	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.940;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=1.506;SB=-1.610e+02;SOR=0.556;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,21:49:99:557,0,735
2	44858586	rs3106840	G	A	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=1.078;SB=0.00;SOR=0.473;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:190,0,282
2	44858687	rs10191477	T	C	662.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.313;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.930;HaplotypeScore=3.3307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.088;SB=-3.710e+02;SOR=0.290;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,26:58:99:691,0,916
2	44931520	rs343989	C	T	619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.105;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.396;SB=-2.120e+02;SOR=0.929;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,22:54:99:648,0,795
2	44942384	rs343957	C	G	793.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1123;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.35;SB=-3.250e+02;SOR=1.781;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:60:822,60,0
2	44993487	rs11679997	C	T	669.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.044;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.191;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.172;SB=-2.400e+02;SOR=0.307;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:698,0,513
2	44993542	rs343937	A	G	867.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.300;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=5.270;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-0.890;SB=-2.610e+02;SOR=1.585;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,33:68:99:896,0,906
2	45170153	rs4953152	G	A	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.412;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-1.415;SB=0.00;SOR=0.846;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:470,0,409
2	45171842	rs338074	A	G	1137.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=-6.590e+02;SOR=0.954;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:84:1166,84,0
2	45233188	.	G	A	489.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.732;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.41;ReadPosRankSum=-1.433;SB=-3.000e+01;SOR=2.187;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:518,0,207
2	45640334	rs3755072	T	C	366.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.800;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.352;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=-0.814;SB=-2.450e+02;SOR=0.446;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:395,0,463
2	45647043	rs3213788	C	G	1056.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.955;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=3.093;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.172;SB=-4.060e+02;SOR=1.089;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1085,0,1091
2	45773816	rs2276657	C	G	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.802;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.862;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=-0.633;SB=-6.700e+01;SOR=1.230;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:480,0,424
2	45774050	rs6708810	G	A	759.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.628;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=-0.189;SB=-1.020e+02;SOR=0.829;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,27:51:99:788,0,767
2	45774548	rs1865685	A	C	2166.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-1.268e+03;SOR=1.091;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2195,157,0
2	45778459	rs3755081	C	T	404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.463;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-0.040;SB=-8.097e+01;SOR=0.073;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:433,0,547
2	45780962	rs3816107	C	G	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.43;ReadPosRankSum=-1.548;SB=-8.900e+01;SOR=0.446;VQSLOD=8.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,6:18:99:162,0,313
2	45806963	rs374392017	TA	T	49.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DB;DP=20;ExcessHet=3.0103;FS=9.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.62;RPA=15,14;RU=A;ReadPosRankSum=0.381;SB=-3.600e+01;SOR=0.042;STR;VQSLOD=4.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:20:87:87,0,237
2	45812666	rs34838023	A	G	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.596;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-0.464;SB=-6.700e+01;SOR=0.180;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:208,0,276
2	45826526	rs35501868	CT	C	2183.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.96;SB=-4.510e+02;SOR=2.970;VQSLOD=4.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2221,154,0
2	45829286	rs12998864	A	C	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.063;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=1.671;SB=-2.501e+01;SOR=1.329;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:25:99:280,0,403
2	45879610	rs637909	A	G	784.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.38;SB=-3.377e+01;SOR=4.712;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:813,60,0
2	46203796	rs2278786	G	C	518.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.505;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.168;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=0.161;SB=-1.610e+02;SOR=0.891;VQSLOD=7.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,21:56:99:547,0,992
2	46211658	rs4953294	G	A	1188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.451;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=4.236;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-1.384;SB=-4.000e+02;SOR=1.187;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,43:91:99:1217,0,1220
2	46211935	rs2595213	T	C	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.308;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=-0.301;SB=-1.765e+00;SOR=2.368;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:415,0,261
2	46231942	rs61758278	C	T	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.243;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=6.103;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=0.596;SB=-9.300e+01;SOR=2.118;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:565,0,384
2	46237446	rs1987070	C	A	1231.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-4.380e+02;SOR=1.802;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:93:1260,93,0
2	46378419	.	T	TACAC	413.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.87;RPA=22,24;RU=AC;ReadPosRankSum=1.680;SB=0.00;SOR=2.833;STR;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,11:30:81:451,0,81
2	46583235	rs6743991	C	A	554.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-7.297e+01;SOR=3.258;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:583,45,0
2	46583277	.	C	CCG	374.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;DP=23;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.29;ReadPosRankSum=0.000;SB=-8.600e+01;SOR=1.296;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:412,0,253
2	46583279	.	C	T	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.0987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.76;ReadPosRankSum=0.526;SB=-6.400e+01;SOR=1.162;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:353,0,335
2	46583281	rs75984373	C	T	462.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.1518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.12;ReadPosRankSum=0.194;SB=-1.030e+02;SOR=1.078;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,15:23:99:491,0,218
2	46583593	rs2278753	G	A	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=8.436;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.683;SB=-2.501e+01;SOR=2.556;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:224,0,229
2	46584059	rs34136947	T	G	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.032;SB=0.00;SOR=0.368;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:278,0,478
2	46602722	rs7567582	T	C	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.519;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.64;ReadPosRankSum=0.347;SB=-3.876e+01;SOR=0.399;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:480,0,300
2	46603671	rs7557402	C	G	1404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-0.217;SB=-7.880e+02;SOR=0.711;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,60:127:99:1433,0,1780
2	46605659	rs7571218	A	G	126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-1.339;SB=-4.176e+01;SOR=0.132;VQSLOD=7.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,6:13:99:155,0,244
2	46605954	rs7598371	G	C	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.379;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=6.069;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-1.096;SB=-1.730e+02;SOR=0.160;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:490,0,575
2	46608542	rs13006131	C	G	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=0.201;SB=-1.765e+00;SOR=0.963;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:199,0,365
2	46707851	rs61995902	G	A	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.458;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.27;ReadPosRankSum=0.308;SB=-2.010e+02;SOR=0.154;VQSLOD=6.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,15:40:99:319,0,626
2	46707886	rs12612916	G	A	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.242;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=9.863;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=2.159;SB=-2.657e-01;SOR=3.486;VQSLOD=5.86;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:260,0,356
2	46739157	rs3814045	A	G	1423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.069;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-1.081;SB=-6.670e+02;SOR=0.681;VQSLOD=8.16;culprit=DP	GT:AD:DP:GQ:PL	0/1:80,59:139:99:1452,0,2137
2	46771134	rs6714484	G	C	1362.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-1.225e+02;SOR=4.407;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1391,105,0
2	46799852	rs1451153	G	T	1000.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.072;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=6.121;HaplotypeScore=1.6809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-1.283;SB=-3.390e+02;SOR=1.449;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,36:78:99:1029,0,1080
2	46808243	rs149388763	GGA	G	363.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.47;MQ0=0;MQRankSum=-0.349;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=1.535;SB=0.00;SOR=0.976;VQSLOD=3.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:15:99:401,0,287
2	46818992	rs17818315	C	T	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=9.302;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=-0.330;SB=-7.500e+01;SOR=2.120;VQSLOD=6.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,17:46:99:463,0,788
2	46819815	rs2305350	A	G	690.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.102;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.040;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.031;SB=-3.080e+02;SOR=1.002;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,29:58:99:719,0,766
2	46842410	rs2242033	A	G	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=-0.908;SB=-5.150e-01;SOR=2.546;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:173,0,221
2	46845849	rs2122715	A	G	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.544;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.02;ReadPosRankSum=-0.021;SB=-1.460e+02;SOR=0.346;VQSLOD=7.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,10:31:99:246,0,631
2	46851180	rs11333819	AT	A	68.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.44;RPA=10,9;RU=T;ReadPosRankSum=0.386;SB=-1.227e+01;SOR=0.986;STR;VQSLOD=7.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,8:22:99:106,0,275
2	46987139	.	G	A	706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.187;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.244;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.04;ReadPosRankSum=2.093;SB=-3.660e+02;SOR=0.346;VQSLOD=5.86;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:34,30:64:99:735,0,941
2	47044218	rs2289929	G	A	721.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.55;SB=-2.341e+02;SOR=1.609;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:750,57,0
2	47044277	rs2289930	C	T	894.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.06;SB=-2.690e+02;SOR=1.708;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:923,69,0
2	47045267	rs2289931	G	A	1260.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-5.670e+02;SOR=1.556;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:93:1289,93,0
2	47045309	rs2289933	C	T	1425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.96;SB=-8.840e+02;SOR=0.813;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1454,105,0
2	47049038	rs2278714	G	T	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.019;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.714;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=1.221;SB=-6.200e+01;SOR=1.075;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:296,0,430
2	47049409	rs2278715	C	T	1350.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-3.300e+02;SOR=2.833;VQSLOD=7.31;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1379,105,0
2	47049453	rs1053952	A	G	826.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.45;SB=-1.185e+02;SOR=3.442;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:855,66,0
2	47081092	rs11687883	C	T	1296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.930;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=2.096;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=1.609;SB=-4.460e+02;SOR=1.112;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,47:78:99:1325,0,787
2	47083030	rs3835756	ATG	A	867.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DB;DP=37;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=1.170;SB=-2.780e+02;SOR=0.468;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,23:37:99:905,0,548
2	47083252	rs11691225	G	T	684.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.089;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.221;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=0.831;SB=-1.300e+02;SOR=1.476;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,24:45:99:713,0,583
2	47085398	rs2278711	C	T	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.403;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=1.601;SB=0.00;SOR=0.914;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:300,0,239
2	47132834	.	TAAA	TAAAAAA,T	944.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.134;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.62;MQ0=0;MQRankSum=0.380;QD=23.62;RPA=20,23,17;RU=A;ReadPosRankSum=-0.463;SB=-2.190e+02;SOR=1.556;STR;VQSLOD=1.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,14,23:59:99:982,614,1081,346,0,942
2	47132856	rs55834277	G	A	626.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.392;DB;DP=47;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.2715;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=1.001;QD=13.63;ReadPosRankSum=-0.902;SB=-1.390e+02;SOR=0.571;VQSLOD=2.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,24:46:99:655,0,649
2	47133055	rs11890177	T	C	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.637;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.900;SB=-2.501e+01;SOR=1.460;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,10:23:99:313,0,352
2	47134904	rs2289928	G	A	763.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.884;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.461;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=0.900;SB=-2.370e+02;SOR=1.140;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,27:39:99:792,0,316
2	47135246	rs2289927	A	G	398.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.959;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-0.342;SB=-1.493e+02;SOR=0.058;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:427,0,246
2	47136381	rs115468082	G	C	1190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=2.916;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=1.172;SB=-4.400e+02;SOR=1.179;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,43:93:99:1219,0,1342
2	47144532	rs6715620	T	C	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.520;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=7.871;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=1.313;SB=-2.130e+02;SOR=0.132;VQSLOD=6.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,14:34:99:311,0,567
2	47168597	rs140303915	C	A	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.929;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=-0.380;SB=-1.030e+02;SOR=0.787;VQSLOD=9.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:20:99:206,0,341
2	47177787	rs2033533	G	T	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.518;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.089;SB=0.00;SOR=0.512;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:255,0,356
2	47179063	rs28379847	C	T	491.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.178;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-1.901;SB=-1.765e+00;SOR=1.519;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:520,0,631
2	47201797	rs6745836	A	T	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.94;ReadPosRankSum=0.660;SB=-5.300e+01;SOR=0.986;VQSLOD=7.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:99:127,0,369
2	47202314	rs2304286	C	T	1668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.650;HaplotypeScore=2.7896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-0.416;SB=-9.090e+02;SOR=0.465;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,64:107:99:1697,0,1235
2	47205975	.	G	A	1366.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;DP=104;Dels=0.00;ExcessHet=3.0103;FS=3.637;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.14;ReadPosRankSum=1.239;SB=-7.610e+02;SOR=0.686;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,52:104:99:1395,0,1251
2	47220414	rs6544948	T	A	690.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.171;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.151;SB=-2.640e+02;SOR=1.022;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,27:49:99:719,0,514
2	47238254	rs17036060	G	A	465.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.070;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.554;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=-0.399;SB=-4.276e+01;SOR=0.132;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,15:34:99:494,0,672
2	47250819	rs12988535	A	G	589.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.066;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.142;SB=-7.300e+01;SOR=0.518;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,22:39:99:618,0,556
2	47251510	rs11885389	G	C	592.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.448;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.142;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.662;SB=-3.920e+02;SOR=0.498;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,25:46:99:621,0,482
2	47251555	rs72872958	G	T	476.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.156;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.083;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=1.742;SB=-3.070e+02;SOR=0.777;VQSLOD=7.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,22:52:99:505,0,805
2	47251634	rs6713052	T	C	1135.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.81;SB=-7.720e+02;SOR=0.990;VQSLOD=4.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:81:1164,81,0
2	47251698	rs13400315	T	C	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=-0.728;SB=-8.097e+01;SOR=0.430;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,12:16:99:343,0,113
2	47251725	rs72806599	G	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=-0.319;SB=0.00;SOR=1.609;VQSLOD=9.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:93:235,0,93
2	47273732	rs7593339	G	A	570.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=-4.176e+01;SOR=4.294;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:599,45,0
2	47277207	rs3816066	C	A	3610.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-1.757e+03;SOR=1.208;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3639,262,0
2	47277208	rs3816065	A	G	3655.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-1.890e+03;SOR=1.188;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3684,262,0
2	47301029	rs3739099	A	G	508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.733;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.823;SB=-7.000e+01;SOR=0.495;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,17:38:99:537,0,634
2	47314048	rs2280647	T	C	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=0.000;SB=0.00;SOR=0.330;VQSLOD=9.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:120,0,236
2	47314052	rs1474394	T	C	380.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=0.00;SOR=4.804;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:409,30,0
2	47348155	rs6741295	G	A	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=0.360;SB=-1.765e+00;SOR=2.215;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:307,0,200
2	47348156	rs6741108	C	A	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=0.362;SB=-1.765e+00;SOR=2.215;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:315,0,206
2	47348347	rs1880583	C	T	938.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.466;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=11.862;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-0.959;SB=-3.270e+02;SOR=1.629;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,35:76:99:967,0,1008
2	47357458	rs58184321	A	G	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.110;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.579;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-2.079;SB=-1.310e+02;SOR=0.387;VQSLOD=7.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,14:33:99:407,0,564
2	47380203	rs815809	T	C	1827.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.28;SB=-1.138e+03;SOR=0.933;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1856,138,0
2	47382214	rs815806	C	G	1078.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-3.920e+02;SOR=1.819;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1107,81,0
2	47382300	rs815805	G	A	558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.631;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.029;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-0.194;SB=-3.880e+02;SOR=0.662;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,25:55:99:587,0,835
2	47382342	rs815804	G	T	503.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.802;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=-0.563;SB=-3.170e+02;SOR=0.784;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,21:55:99:532,0,929
2	47390026	rs1027478	C	T	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.200;SB=0.00;SOR=0.693;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:162,0,165
2	47601106	rs1126497	T	C	1992.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=1.484;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=0.186;SB=-1.219e+03;SOR=0.542;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,74:122:99:2021,0,1211
2	47612224	rs7584256	C	T	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=0.712;SB=-1.765e+00;SOR=1.329;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:135,0,173
2	47630550	MMR_c.211+9C>G	C	G	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=-1.210;SB=-9.000e+01;SOR=0.559;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:27:99:300,0,435
2	47630639	MMR_c.211+98T>C	T	C	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.618;SB=0.00;SOR=0.693;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:185,0,203
2	47641559	.	TAAAA	T,TAA	475.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.118;DP=27;ExcessHet=3.0103;FS=2.092;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.14;MQ0=0;MQRankSum=-0.615;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.65;RPA=27,23,25;RU=A;ReadPosRankSum=-0.314;SB=-1.800e+02;SOR=1.371;STR;VQSLOD=0.293;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,8,9:27:99:513,149,247,181,0,171
2	47690404	rs3771278	T	C	366.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.721;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=0.285;SB=-1.990e+02;SOR=0.748;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:395,0,434
2	47690408	rs3771279	A	G	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.772;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.374;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=1.435;SB=-1.150e+02;SOR=0.948;VQSLOD=7.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,14:34:99:354,0,474
2	47690411	rs3771280	T	C	327.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.431;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=1.440;SB=-1.260e+02;SOR=1.041;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:356,0,407
2	47693706	MMR_c.1511-91G>T	G	T	429.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.413;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.232;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-1.714;SB=-1.060e+02;SOR=0.110;VQSLOD=7.75;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,17:39:99:458,0,755
2	47693959	MMR_c.1661+12G>A	G	A	526.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.461;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=0.628;SB=0.00;SOR=1.302;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,17:27:99:555,0,322
2	47698308	rs3764959	A	G	634.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=7.892;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-1.743;SB=-3.650e+02;SOR=0.183;VQSLOD=6.41;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:28,28:56:99:663,0,865
2	47698384	rs3764960	G	A	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.222;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.396;SB=-1.330e+02;SOR=0.743;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:472,0,633
2	47703379	rs2059521	C	T	987.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=0.00;SOR=6.518;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1016,75,0
2	47703500	MMR_c.2006-6T>C	T	C	1243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.706;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=6.816;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.756;SB=-7.510e+02;SOR=0.280;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,50:99:99:1272,0,1331
2	47739551	rs2303424	A	G	1031.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.089;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.074;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=-0.284;SB=-2.730e+02;SOR=1.022;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,36:65:99:1060,0,770
2	47748292	rs2278139	A	G	499.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.133;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-1.272;SB=-2.870e+02;SOR=0.208;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:528,0,606
2	47888014	rs2944780	A	G	647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.137;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.710;SB=-3.130e+02;SOR=0.978;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:676,0,554
2	48030458	rs2072447	G	C	496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-7.597e+01;SOR=2.985;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:525,39,0
2	48030838	MMR_c.3438+14A>T	A	T	2384.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-9.410e+02;SOR=1.704;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2413,181,0
2	48032312	MMR_c.3556+146G>A	G	A	456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=0.00;SOR=5.283;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:485,39,0
2	48032740	.	A	ATT,AT	1360.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.77;RPA=13,15,14;RU=T;SB=-2.840e+02;SOR=2.448;STR;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,22,27:51:99:1398,631,523,534,0,395
2	48032874	MMR_c.3646+29_3646+32delCTAT	ACTAT	A	2955.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;RPA=2,1;RU=CTAT;SB=-8.270e+02;SOR=2.007;STR;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:55:99:2993,132,0
2	48032937	rs3136359	T	C	956.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-4.276e+01;SOR=5.058;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:985,72,0
2	48033551	MMR_c.3801+54C>G	C	G	3002.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.00;SB=-1.837e+03;SOR=0.715;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3031,220,0
2	48035673	rs2710163	A	G	507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=0.00;SOR=5.283;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:536,39,0
2	48036887	rs371182710	A	C	1253.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.58;SB=-1.653e+02;SOR=3.737;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:96:1282,96,0
2	48040564	.	A	ATT	194.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.647;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.19;RPA=23,25;RU=T;ReadPosRankSum=0.725;SB=0.00;SOR=3.611;STR;VQSLOD=4.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,11:15:1:229,1,0
2	48040904	.	G	GA	630.73	PASS	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;RPA=6,7;RU=A;SB=-1.661e+02;SOR=2.200;STR;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:22:63:668,63,0
2	48046012	rs374445177	TA	T	94.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=1.652;QD=2.43;RPA=15,14;RU=A;ReadPosRankSum=0.750;SB=-4.600e+01;SOR=0.512;STR;VQSLOD=1.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,11:40:99:132,0,642
2	48713777	rs33994624	C	T	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.421;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=0.219;SB=-1.600e+02;SOR=0.426;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,14:35:99:378,0,572
2	48722755	rs4443044	T	C	152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=0.054;SB=0.00;SOR=0.340;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:181,0,338
2	48725610	rs3811519	C	T	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.348;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-0.759;SB=-1.360e+02;SOR=0.229;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:407,0,419
2	48734576	rs6716341	G	A	1901.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-7.010e+02;SOR=1.721;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1930,141,0
2	48738687	rs4528813	G	C	624.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-7.697e+01;SOR=3.500;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:653,48,0
2	48808465	.	G	A	1441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.371;DP=86;Dels=0.00;ExcessHet=3.0103;FS=9.031;HaplotypeScore=1.7719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.76;ReadPosRankSum=1.605;SB=-7.420e+02;SOR=0.229;VQSLOD=4.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,47:86:99:1470,0,1185
2	48819197	rs2293276	A	G	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.485;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.873;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.110;SB=-6.100e+01;SOR=1.609;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:369,0,462
2	48822381	rs2140551	G	A	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.851;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.459;HaplotypeScore=1.5115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.43;ReadPosRankSum=0.851;SB=-1.120e+02;SOR=1.085;VQSLOD=7.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,10:34:99:281,0,709
2	48822540	rs7574549	T	C	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.534;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=0.753;SB=-1.350e+02;SOR=1.179;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:441,0,233
2	48844968	rs2293269	C	G	1182.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-6.010e+02;SOR=1.121;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1211,87,0
2	48848515	rs17037472	G	C	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.093;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=0.399;SB=-8.297e+01;SOR=0.180;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:403,0,268
2	48869463	rs187708586	T	A	39.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.84;ReadPosRankSum=0.779;SB=-1.766e+00;SOR=0.425;VQSLOD=8.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:68:68,0,366
2	48898798	rs3920390	T	A	3966.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.896;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.05;ReadPosRankSum=0.236;SB=-1.891e+03;SOR=0.474;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,131:134:99:3995,292,0
2	48906625	rs1965508	T	C	1059.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-5.650e+02;SOR=1.022;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1088,78,0
2	48915871	rs11125179	A	G	1823.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-1.064e+03;SOR=0.914;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1852,132,0
2	48921375	rs2293275	T	C	1085.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-5.720e+02;SOR=1.148;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1114,81,0
2	48925746	rs6755901	C	T	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.912;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.460;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-1.900;SB=-4.160e+02;SOR=0.506;VQSLOD=8.04;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,27:49:99:684,0,670
2	48925986	rs70946824	AT	A	120.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=17.25;RPA=12,11;RU=T;SB=0.00;SOR=4.174;STR;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:13:21:158,21,0
2	48941072	rs111834744	CA	C	333.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;DB;DP=20;ExcessHet=3.0103;FS=3.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=-0.114;SB=-9.732e-01;SOR=2.303;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:371,0,483
2	48952701	rs6545063	C	G	485.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;SB=0.00;SOR=5.283;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:514,39,0
2	48956431	rs11892719	T	A	522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.919;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.583;SB=-2.690e+02;SOR=0.327;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,21:40:99:551,0,505
2	48956475	rs11887058	C	T	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.397;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=5.704;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=-0.903;SB=-1.603e+02;SOR=0.092;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,17:25:99:463,0,257
2	48956512	rs11897846	A	G	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.238;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=0.000;SB=-4.276e+01;SOR=0.446;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:403,0,224
2	48958595	rs4597581	A	G	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=1.602;SB=0.00;SOR=1.445;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:283,0,129
2	48960317	rs4637174	A	G	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.194;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.05;ReadPosRankSum=0.680;SB=-9.732e-01;SOR=0.941;VQSLOD=9.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,4:17:99:114,0,416
2	48982485	rs4073367	T	C	119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=0.155;SB=-9.900e+01;SOR=0.307;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:148,0,136
2	49003458	rs62135453	C	T	700.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.431;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-0.944;SB=-3.450e+02;SOR=1.255;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,29:65:99:729,0,949
2	49003566	rs10194838	C	T	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=5.643;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=0.031;SB=-1.553e+02;SOR=0.080;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,16:24:99:430,0,220
2	49189921	rs6166	C	T	1233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.502;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.789;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=1.175;SB=-6.060e+02;SOR=0.798;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1262,0,1217
2	49191041	rs6165	C	T	646.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.141;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.219;SB=-1.610e+02;SOR=0.527;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,22:43:99:675,0,605
2	49215977	rs2072488	G	A	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.858;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=1.245;SB=0.00;SOR=0.914;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:308,0,272
2	49216284	rs2072487	C	T	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.906;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-0.152;SB=0.00;SOR=0.527;VQSLOD=10.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:283,0,391
2	49217916	rs2072486	T	G	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=-0.973;SB=-1.080e+02;SOR=0.160;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,7:13:99:151,0,128
2	49241849	rs6708637	G	A	2314.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-2.151e+02;SOR=4.277;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2343,178,0
2	49244559	rs2091787	A	G	2541.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.82;SB=-5.850e+02;SOR=2.681;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2570,187,0
2	49286879	rs11125201	C	A	1378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.58;SB=-8.740e+02;SOR=0.952;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1407,99,0
2	49381585	rs1394205	C	T	985.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.17;SB=-4.176e+01;SOR=5.211;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:1014,78,0
2	49509859	.	C	CT	108.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.04;RPA=5,6;RU=T;ReadPosRankSum=-0.609;SB=0.00;SOR=0.255;STR;VQSLOD=9.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,6:18:99:146,0,312
2	49510173	rs7578654	A	C	238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.24;ReadPosRankSum=1.280;SB=-1.470e+02;SOR=0.680;VQSLOD=9.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,11:33:99:267,0,554
2	50201110	rs9636391	A	G	896.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.069;SB=-5.630e+02;SOR=0.634;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,36:67:99:925,0,805
2	50246224	rs7571903	C	G	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=0.443;SB=-3.500e+01;SOR=0.892;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:207,0,172
2	50246232	rs146211469	TCCAAAACATTA	T	766.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=1.491;SB=-1.300e+02;SOR=1.609;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:804,0,1100
2	50246249	rs7586095	T	G	255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.423;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.076;SB=-1.060e+02;SOR=0.693;VQSLOD=10.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:284,0,312
2	50574485	rs13422484	A	G	377.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=0.000;SB=-1.700e+02;SOR=0.610;VQSLOD=9.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,15:37:99:406,0,662
2	50692560	rs3213756	A	G	1294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.505;SB=-6.500e+02;SOR=0.630;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,51:107:99:1323,0,1606
2	50692819	rs10168838	T	G	989.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.563e+02;SOR=2.985;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1018,75,0
2	50693504	rs75315267	AAC	A	360.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.895;SB=-1.370e+02;SOR=0.648;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:398,0,742
2	50699305	rs2075234	T	A	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.702;SB=0.00;SOR=0.446;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:260,0,382
2	50733545	rs13008919	G	T	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.178;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.663;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=-0.283;SB=-9.732e-01;SOR=1.445;VQSLOD=7.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:154,0,370
2	50733860	rs7584062	A	G	1189.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-3.940e+02;SOR=2.012;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:38:90:1218,90,0
2	50758657	rs2066948	T	C	1129.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=-2.660e+02;SOR=2.649;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1158,84,0
2	50858107	rs961405	T	A	728.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.92;SB=-1.245e+02;SOR=2.948;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:757,57,0
2	50966161	rs1713859	G	A	1315.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.60;SB=-6.900e+02;SOR=1.329;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1344,99,0
2	50966283	rs1546667	C	T	2563.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.143e+03;SOR=1.236;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2592,193,0
2	51148872	rs36106628	T	A	115.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.754;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.09;ReadPosRankSum=0.649;SB=-5.150e-01;SOR=1.609;VQSLOD=6.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:99:144,0,432
2	51206342	rs35296842	C	G	738.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.189;SB=-1.240e+02;SOR=0.892;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,25:51:99:767,0,783
2	51254478	rs13023341	G	A	258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=-0.976;SB=-1.500e+02;SOR=0.197;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:287,0,171
2	51254824	rs201644834	G	A	1171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.336;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.96;ReadPosRankSum=0.756;SB=-7.110e+02;SOR=0.702;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,45:98:99:1200,0,1588
2	52929596	rs6711444	C	G	589.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=0.00;SOR=5.549;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:618,45,0
2	52929680	rs6726779	T	C	1226.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-3.660e+02;SOR=2.179;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1255,93,0
2	52929780	rs6726935	T	G	1516.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-8.200e+02;SOR=1.201;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1545,111,0
2	52929844	rs6545299	G	A	1188.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;SB=-1.155e+02;SOR=4.047;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1217,90,0
2	53832072	rs2357490	C	T	751.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.318;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.466;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-0.671;SB=-2.610e+02;SOR=0.403;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,30:65:99:780,0,953
2	53956838	rs10490467	A	G	908.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.954;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.414;SB=-3.230e+02;SOR=0.610;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,33:65:99:937,0,911
2	54023247	rs72502136	GT	G	89.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.61;RPA=11,10;RU=T;ReadPosRankSum=0.258;SB=0.00;SOR=0.495;STR;VQSLOD=9.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,7:18:99:127,0,209
2	54024626	rs2692514	C	T	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.201;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-0.267;SB=-9.500e+01;SOR=0.941;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:368,0,426
2	54035374	rs2692519	A	G	411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.774;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.570;SB=-4.176e+01;SOR=0.163;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:440,0,593
2	54041983	rs2542571	G	T	801.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.494;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=0.286;SB=-4.140e+02;SOR=0.611;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,35:86:99:830,0,1311
2	54042132	.	CT	C	158.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DP=35;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=1.816;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=6.11;RPA=21,20;RU=T;ReadPosRankSum=-0.849;SB=-2.747e+00;SOR=1.981;STR;VQSLOD=0.206;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,14:35:99:196,0,137
2	54114967	rs805399	G	A	1537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.295;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=-1.109;SB=-3.100e+02;SOR=0.602;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,53:105:99:1566,0,1527
2	54115904	rs805400	A	G	966.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.559;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.863;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.286;SB=-5.130e+02;SOR=0.871;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,36:77:99:995,0,1141
2	54116003	rs805401	C	T	674.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.487;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=0.122;SB=-8.800e+01;SOR=1.473;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,24:54:99:703,0,843
2	54120025	rs805408	A	T	574.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.284;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.384;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=-0.478;SB=-2.660e+02;SOR=1.256;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,22:33:99:603,0,289
2	54120591	rs805411	C	T	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-0.179;SB=0.00;SOR=0.330;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:274,0,533
2	54120820	rs805412	G	A	627.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.739;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=2.154;SB=-1.520e+02;SOR=1.179;VQSLOD=7.29;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,23:49:99:656,0,734
2	54122956	rs698856	A	G	519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.516;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=1.998;SB=-4.400e+01;SOR=1.022;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:36:99:548,0,510
2	54122984	rs698857	C	T	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.990;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=-0.423;SB=0.00;SOR=1.609;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,15:22:99:460,0,225
2	54125258	rs805416	T	C	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=2.189;SB=-7.201e+01;SOR=0.527;VQSLOD=9.05;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:216,0,119
2	54125495	rs805417	T	C	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.648;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=0.396;SB=-6.400e+01;SOR=0.846;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,10:26:99:302,0,455
2	54127041	rs805423	C	T	1103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.999;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-1.067;SB=-8.160e+02;SOR=0.432;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,47:74:99:1132,0,720
2	54133744	rs805316	T	C	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=-0.386;SB=-1.310e+02;SOR=0.782;VQSLOD=8.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,11:38:99:302,0,763
2	54135429	rs805319	G	C	615.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.508;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-2.642;SB=-1.290e+02;SOR=0.678;VQSLOD=8.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,22:54:99:644,0,945
2	54148331	rs805330	C	A	508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=-0.300;SB=0.00;SOR=2.419;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,15:19:99:537,0,103
2	54152927	rs2302879	T	C	504.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.370;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.41;ReadPosRankSum=-0.779;SB=-2.120e+02;SOR=0.916;VQSLOD=10.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:533,0,348
2	54155240	rs805349	A	G	601.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.801;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=5.429;HaplotypeScore=2.8661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-0.064;SB=-9.400e+01;SOR=1.863;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,23:47:99:630,0,678
2	54158957	rs805352	C	T	946.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.815;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.304;SB=-2.620e+02;SOR=0.606;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,34:62:99:975,0,773
2	54161885	rs805357	G	T	1527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.235;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=1.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-0.340;SB=-3.010e+02;SOR=0.948;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,52:95:99:1556,0,1212
2	54175440	rs805445	T	C	629.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.580;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.464;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=0.650;SB=-2.170e+02;SOR=1.519;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,22:36:99:658,0,308
2	54278667	rs7590846	T	C	118.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-1.637;SB=-8.700e+01;SOR=0.446;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:147,0,108
2	54343012	rs7573491	C	A	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.072;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.533;SB=-1.020e+02;SOR=0.446;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:276,0,236
2	54362437	rs2357954	T	C	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.091;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=0.567;SB=-3.500e+01;SOR=0.307;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:245,0,492
2	54482964	rs843704	C	T	1086.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.925;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=3.653;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.499;SB=-4.940e+02;SOR=1.059;VQSLOD=7.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:64,43:107:99:1115,0,1807
2	54494370	rs865816	A	G	676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-1.553e+02;SOR=2.531;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:705,51,0
2	54557360	rs59595339	A	G	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.207;SB=-1.240e+02;SOR=0.527;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:342,0,424
2	54562012	rs55714450	C	A	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.261;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-0.735;SB=-1.050e+02;SOR=0.446;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:380,0,415
2	54587596	rs2280718	C	T	1719.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-1.000e+03;SOR=0.841;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1748,126,0
2	54608883	rs11677654	C	A	1462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-6.120e+02;SOR=1.562;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1491,111,0
2	54756740	rs1802889	C	T	637.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.57;SB=-3.960e+02;SOR=1.051;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:48:666,48,0
2	54839276	rs3796014	A	G	5620.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-3.595e+03;SOR=0.704;VQSLOD=5.01;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,179:179:99:5649,403,0
2	54844790	rs2229506	C	T	527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=5.825;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=0.633;SB=-1.960e+02;SOR=1.313;VQSLOD=6.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,20:56:99:556,0,818
2	54844911	rs72618664	G	A	437.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-1.529;SB=-1.360e+02;SOR=1.230;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:466,0,266
2	54855137	rs2971887	T	C	2723.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-5.740e+02;SOR=3.070;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2752,202,0
2	54858511	rs1052788	C	T	2264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=2.840;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.621;SB=-1.135e+03;SOR=0.959;VQSLOD=7.20;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,81:157:99:2293,0,1986
2	54884870	rs966003	C	T	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=0.756;SB=-1.260e+02;SOR=0.801;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:386,0,460
2	54885314	rs2941586	A	T	487.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.84;SB=-4.276e+01;SOR=3.912;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:516,39,0
2	54886347	rs1052820	G	A	929.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.914;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-0.552;SB=-5.070e+02;SOR=0.584;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,33:67:99:958,0,873
2	54894649	rs907136	G	A	806.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.303;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=-0.128;SB=-4.190e+02;SOR=0.629;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,31:78:99:835,0,1239
2	55040426	rs2631840	A	G	4158.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-2.445e+03;SOR=0.751;VQSLOD=5.37;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4187,310,0
2	55071101	.	T	TTGTGTG	452.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;RPA=20,23;RU=TG;ReadPosRankSum=-0.455;SB=0.00;SOR=0.163;STR;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,7:30:99:490,0,1133
2	55074429	rs12465327	C	A	707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=-4.176e+01;SOR=4.615;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:736,57,0
2	55074878	.	A	G	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.43;ReadPosRankSum=2.029;SB=0.00;SOR=0.330;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:132,0,246
2	55091029	rs2358155	C	T	943.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.572;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.941;HaplotypeScore=1.9536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.175;SB=-4.390e+02;SOR=0.516;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,35:73:99:972,0,989
2	55093784	rs17417731	T	A	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=1.834;SB=0.00;SOR=1.802;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:90:281,0,90
2	55093842	rs1961245	G	A	199.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.074;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.800;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=0.794;SB=-4.800e+01;SOR=1.356;VQSLOD=7.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,9:25:99:228,0,417
2	55093859	rs4671981	C	G	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.99;ReadPosRankSum=1.376;SB=-5.700e+01;SOR=1.230;VQSLOD=6.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:27:99:217,0,447
2	55098518	.	G	C	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.981;SB=0.00;SOR=0.160;VQSLOD=8.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:99:114,0,379
2	55118078	rs6729866	T	G	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.441;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=1.154;SB=0.00;SOR=0.874;VQSLOD=10.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:368,0,339
2	55121851	rs997198	T	A	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=0.493;SB=-4.076e+01;SOR=1.022;VQSLOD=10.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:55:256,0,55
2	55122589	rs6545454	A	G	923.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=0.312;SB=-4.830e+02;SOR=0.520;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,36:54:99:952,0,495
2	55126730	rs6545455	C	G	727.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.408;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.511;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=-0.610;SB=-9.700e+01;SOR=1.085;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,24:42:99:756,0,577
2	55138272	rs2304688	G	A	912.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=0.00;SOR=6.439;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:941,72,0
2	55138282	rs2304687	C	T	420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.392;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=0.000;SB=0.00;SOR=1.863;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,13:18:99:449,0,151
2	55138302	rs2304686	G	A	451.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=0.00;SOR=5.136;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:480,36,0
2	55155551	rs733916	C	T	1012.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.750;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=-0.232;SB=-3.890e+02;SOR=0.821;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,33:61:99:1041,0,758
2	55180965	rs4671998	G	A	465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=0.00;SOR=5.283;VQSLOD=7.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:494,39,0
2	55181022	.	TA	T	162.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.42;RPA=17,16;RU=A;ReadPosRankSum=-0.557;SB=-4.419e+01;SOR=0.560;STR;VQSLOD=8.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,14:30:99:200,0,246
2	55181351	rs4671999	T	C	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.879;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.368;SB=0.00;SOR=0.602;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:264,0,341
2	55181382	rs4672001	G	A	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.630;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=-0.564;SB=0.00;SOR=0.368;VQSLOD=10.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:160,0,286
2	55186229	rs12623902	T	C	981.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.175;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=4.411;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.573;SB=-5.230e+02;SOR=0.444;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,35:78:99:1010,0,1212
2	55186394	rs17346629	A	C	972.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.185;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.797;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-0.150;SB=-5.850e+02;SOR=0.597;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,40:90:99:1001,0,1445
2	55187295	rs35279349	G	A	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.900;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=32.7635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.91;ReadPosRankSum=0.067;SB=-2.020e+02;SOR=0.883;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:375,0,557
2	55187297	.	A	AG	1211.73	PASS	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.45;RPA=4,5;RU=G;SB=-5.880e+02;SOR=0.818;STR;VQSLOD=4.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:34:96:1249,96,0
2	55189931	rs3796007	G	A	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.556;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=-0.748;SB=-3.401e+01;SOR=0.368;VQSLOD=9.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:154,0,288
2	55191321	rs113965812	G	A	672.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.343;HaplotypeScore=1.9318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=2.404;SB=-2.000e+02;SOR=1.071;VQSLOD=7.08;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,23:41:99:701,0,485
2	55196956	rs2580764	G	A	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.007;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.506;SB=0.00;SOR=0.582;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:230,0,249
2	55200800	rs2255112	T	G	526.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.645;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-1.094;SB=-2.130e+02;SOR=0.481;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:555,0,494
2	55201038	rs2255026	C	T	507.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.229;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.026;SB=-1.810e+02;SOR=0.238;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,18:27:99:536,0,233
2	55214618	rs2580769	A	C	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.531;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.576;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-0.079;SB=-5.600e+01;SOR=2.284;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:452,0,379
2	55277226	rs117465650	C	T	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=6.154;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=1.506;SB=-5.900e+01;SOR=1.061;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:161,0,191
2	55404794	rs14026	G	A	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.455;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.38;ReadPosRankSum=-0.053;SB=-8.000e+01;SOR=0.888;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,12:44:99:265,0,874
2	55407754	rs6716066	C	T	2794.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-1.333e+03;SOR=1.141;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2823,214,0
2	55407935	rs10183953	G	A	858.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-7.997e+01;SOR=4.091;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:887,66,0
2	55437014	rs17039586	C	T	522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.384;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.479;SB=-2.750e+02;SOR=0.473;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,21:34:99:551,0,320
2	55439963	rs2118283	C	A	1557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-3.430e+02;SOR=2.687;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1586,120,0
2	55461823	rs2576722	T	A	1406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-5.310e+02;SOR=1.981;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1435,105,0
2	55470115	rs11357	C	T	406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=0.00;SOR=4.977;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:435,33,0
2	55471407	rs2589083	T	C	560.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-3.210e+02;SOR=0.914;VQSLOD=5.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:589,45,0
2	55473371	rs2576724	A	G	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.395;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.320;SB=-7.797e+01;SOR=0.126;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:322,0,302
2	55473386	rs3833559	CAT	C	1455.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.07;SB=-2.313e+02;SOR=3.180;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1493,81,0
2	55473681	rs2589081	A	C	471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.03;SB=0.00;SOR=5.283;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:500,39,0
2	55481322	rs2230370	T	A	668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.468;SB=-3.150e+02;SOR=0.609;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,25:43:99:697,0,511
2	55490819	rs1056445	G	T	817.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6518;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-3.130e+02;SOR=1.697;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:846,63,0
2	55518742	rs2249856	T	C	1372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-3.210e+02;SOR=2.726;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1401,102,0
2	55522422	rs2589110	A	G	2307.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-1.264e+03;SOR=0.880;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2336,169,0
2	55523308	rs35672037	C	CAA	530.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.475;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.93;ReadPosRankSum=1.371;SB=-1.741e+02;SOR=0.859;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,18:19:48:568,48,0
2	55523309	.	C	A	676.77	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.9955;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.03;SB=-1.593e+02;SOR=1.981;VQSLOD=2.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:705,54,0
2	55527108	rs1545121	G	A	2725.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-1.038e+03;SOR=1.473;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2754,205,0
2	55528257	rs2576699	A	C	1318.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-5.530e+02;SOR=1.387;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1347,99,0
2	55576634	rs2589090	C	T	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.457;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.04;ReadPosRankSum=-1.922;SB=-2.100e+02;SOR=0.723;VQSLOD=8.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,16:45:99:390,0,785
2	55582684	rs1437394	A	T	566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=2.061;SB=-1.240e+02;SOR=0.872;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,22:58:99:595,0,1048
2	55589434	rs3111412	T	A	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=1.269;SB=-5.900e+01;SOR=1.371;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:336,0,238
2	55599655	rs3111411	G	A	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-1.408;SB=-6.200e+01;SOR=1.229;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:204,0,215
2	55662398	rs10865285	C	A	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.708;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.93;ReadPosRankSum=-0.211;SB=-1.417e+01;SOR=1.981;VQSLOD=6.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:129,0,273
2	55662423	rs2100454	T	C	489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.78;SB=-3.710e+02;SOR=0.793;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:36:518,36,0
2	55747471	rs76100373	A	G	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.227;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-1.331;SB=-2.400e+02;SOR=0.665;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:409,0,319
2	55760940	rs4671248	G	T	1492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-2.311e+02;SOR=3.109;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1521,111,0
2	55762832	rs72803515	T	C	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-0.344;SB=-7.000e+01;SOR=0.527;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:178,0,179
2	55771050	rs3816489	C	G	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-0.209;SB=-3.001e+01;SOR=0.976;VQSLOD=10.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:271,0,202
2	55771161	rs1045910	A	G	1110.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-6.120e+02;SOR=1.002;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1139,84,0
2	55785828	rs72803536	A	G	1128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.199;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.490;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-0.208;SB=-2.750e+02;SOR=1.250;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1157,0,992
2	55795557	rs56286204	C	T	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.453;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=1.163;SB=-8.600e+01;SOR=1.609;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:363,0,430
2	55805440	rs2903704	T	C	1193.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-4.060e+02;SOR=1.885;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1222,96,0
2	55812061	rs4312532	A	G	1207.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-1.643e+02;SOR=3.797;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1236,99,0
2	55815997	rs6545508	T	C	600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.001;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.716;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-0.462;SB=-3.880e+02;SOR=0.330;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,25:44:99:629,0,553
2	55844105	rs782593	C	T	761.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-4.176e+01;SOR=4.712;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:790,60,0
2	55863360	.	T	TA	243.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.915;QD=7.86;RPA=11,12;RU=A;ReadPosRankSum=-1.222;SB=-5.100e+01;SOR=0.404;STR;VQSLOD=1.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,13:33:99:281,0,321
2	55864372	rs72805484	A	G	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.798;HaplotypeScore=3.8903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=0.535;SB=-1.030e+02;SOR=0.301;VQSLOD=6.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,11:33:99:262,0,648
2	55867845	rs145739483	A	G	39.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.98;ReadPosRankSum=0.398;SB=-5.400e+01;SOR=0.307;VQSLOD=9.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:68:68,0,184
2	55873357	rs72805494	G	C	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=1.779;SB=-1.060e+02;SOR=0.693;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:286,0,248
2	55883317	rs2627765	G	T	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=0.908;SB=-5.150e-01;SOR=2.546;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:170,0,240
2	55889062	rs782604	G	A	385.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-1.553e+02;SOR=1.609;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:30:414,30,0
2	55894428	rs12329050	G	A	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=-0.755;SB=0.00;SOR=0.223;VQSLOD=9.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:89:89,0,254
2	55898130	.	C	CT	171.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.17;RPA=4,5;RU=T;ReadPosRankSum=0.105;SB=0.00;SOR=1.609;STR;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:63:209,0,63
2	55899228	rs782631	A	T	515.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-3.777e+01;SOR=4.047;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:544,42,0
2	55900231	.	G	GA	266.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.88;RPA=10,11;RU=A;ReadPosRankSum=2.794;SB=-7.100e+01;SOR=0.610;STR;VQSLOD=6.87;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,13:28:99:304,0,285
2	55913644	rs72807624	C	A	603.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.715;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=-0.380;SB=-2.070e+02;SOR=0.807;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:632,0,369
2	56094201	rs200536754	GA	G	388.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DB;DP=30;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;RPA=4,3;RU=A;ReadPosRankSum=2.532;SB=-9.301e+01;SOR=0.195;STR;VQSLOD=6.91;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,15:30:99:426,0,412
2	56102019	rs55778215	T	C	596.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.396;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=1.326;SB=-6.000e+01;SOR=1.092;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:40:99:625,0,574
2	56102281	rs55867135	T	C	399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.837;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.472;SB=-1.765e+00;SOR=1.514;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:428,0,560
2	56103682	rs17047287	T	C	871.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.555;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=1.888;SB=-1.240e+02;SOR=0.624;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,30:62:99:900,0,968
2	56108689	rs11680866	G	A	404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.725;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=0.300;SB=-5.150e-01;SOR=2.973;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:433,0,430
2	56108692	rs56237919	T	A	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.279;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.354;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.747;SB=-5.150e-01;SOR=2.833;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:407,0,446
2	56108882	rs3748959	T	C	1164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-2.290;SB=-6.730e+02;SOR=0.652;VQSLOD=8.20;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:53,45:98:99:1193,0,1403
2	56144930	rs14282	T	C	1668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.774;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=4.612;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.879;SB=-1.022e+03;SOR=0.787;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,65:114:99:1697,0,1305
2	56216052	rs10865292	G	A	2418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.01;SB=-8.350e+02;SOR=1.966;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2447,187,0
2	56570006	rs76743159	A	G	317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.895;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.891;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.122;SB=-6.100e+01;SOR=1.609;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,12:27:99:346,0,447
2	56603118	rs72803075	C	G	844.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.018;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.686;SB=-3.460e+02;SOR=0.932;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,30:61:99:873,0,839
2	58275666	rs986512	G	A	949.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-4.370e+02;SOR=1.542;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:72:978,72,0
2	58316814	rs1051061	A	G	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.416;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.960;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=0.712;SB=-5.700e+01;SOR=1.911;VQSLOD=7.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,10:26:99:277,0,426
2	58350504	rs7558007	A	G	376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.32;SB=0.00;SOR=4.804;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:405,30,0
2	58362161	rs11678320	G	A	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.738;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-1.092;SB=-3.300e+01;SOR=0.627;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:438,0,494
2	58388696	rs848291	A	G	771.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.028;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-0.365;SB=-4.360e+02;SOR=0.892;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,31:55:99:800,0,585
2	58390679	rs12624152	T	G	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.038;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=7.277;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.709;SB=-2.262e+02;SOR=0.078;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,17:29:99:409,0,351
2	58425892	rs184994056	C	T	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.931;SB=0.00;SOR=0.693;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:204,0,185
2	58431168	rs1404460	T	C	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=-0.581;SB=0.00;SOR=0.193;VQSLOD=9.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:153,0,398
2	58431410	rs1404459	G	C	780.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-0.382;SB=-3.450e+02;SOR=0.746;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,31:58:99:809,0,670
2	59246730	rs71394430	CT	C	280.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.78;RPA=14,13;RU=T;ReadPosRankSum=0.784;SB=-8.517e+01;SOR=1.387;STR;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,16:19:31:318,0,31
2	60614572	rs243080	G	A	2209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.471;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=5.587;HaplotypeScore=8.5727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=0.543;SB=-1.343e+03;SOR=0.451;VQSLOD=6.63;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,85:165:99:2238,0,2302
2	60614577	rs56239160	A	G	2347.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.692;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=6.922;HaplotypeScore=6.9286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.207;SB=-1.480e+03;SOR=0.342;VQSLOD=5.84;culprit=DP	GT:AD:DP:GQ:PL	0/1:75,86:163:99:2376,0,2166
2	60679942	rs17331129	T	C	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.431;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=0.942;SB=-2.020e+02;SOR=0.245;VQSLOD=7.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,13:30:99:302,0,504
2	60687959	rs7569946	A	G	5125.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-3.068e+03;SOR=0.772;VQSLOD=4.92;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,156:156:99:5154,370,0
2	60768978	rs2665668	G	A	651.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-4.176e+01;SOR=4.294;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:680,51,0
2	60962118	rs3796068	T	C	1798.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-1.173e+03;SOR=0.826;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1827,129,0
2	60962589	rs11692811	T	C	1424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-4.400e+02;SOR=2.252;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1453,105,0
2	60962666	rs376647251	C	T	719.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.922;HaplotypeScore=1.8295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.74;ReadPosRankSum=0.271;SB=-4.910e+02;SOR=0.554;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,31:67:99:748,0,905
2	60962833	rs34405203	G	A	548.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;SB=-4.076e+01;SOR=4.174;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:577,45,0
2	61007782	rs10496089	A	G	3429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.64;SB=-8.000e+02;SOR=2.632;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3458,253,0
2	61008036	rs3845814	C	T	1155.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.38;SB=0.00;SOR=6.932;VQSLOD=3.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1184,93,0
2	61009909	rs10197672	C	T	1512.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4815;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-4.700e+02;SOR=1.863;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1541,114,0
2	61010459	rs77961044	C	T	36.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3864;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-1.221;QD=4.09;ReadPosRankSum=1.383;SB=0.00;SOR=0.132;VQSLOD=1.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,2:10:65:65,0,97
2	61018788	rs11695223	C	T	457.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.49;SB=0.00;SOR=5.136;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:486,36,0
2	61021349	rs11125855	A	G	659.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=0.00;SOR=5.784;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:688,51,0
2	61118739	rs10185028	A	G	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=-0.372;SB=-3.500e+01;SOR=1.061;VQSLOD=10.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:345,0,224
2	61118769	rs202085826	A	G	542.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.636;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.45;ReadPosRankSum=-0.055;SB=-1.040e+02;SOR=0.674;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,19:33:99:571,0,416
2	61121492	rs842644	G	A	1074.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=0.00;SOR=6.869;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:84:1103,84,0
2	61128268	rs6707682	G	A	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.425;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.4931;MLEAC=1;MLEAF=0.500;MQ=58.62;MQ0=0;MQRankSum=-1.389;POSITIVE_TRAIN_SITE;QD=3.77;ReadPosRankSum=-0.564;SB=-9.732e-01;SOR=2.303;VQSLOD=1.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:15:81:81,0,220
2	61128284	rs2115592	T	C	334.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6920;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-3.577e+01;SOR=3.258;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:363,27,0
2	61175312	rs12479056	T	C	2146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.387;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.619;HaplotypeScore=2.6040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.355;SB=-1.122e+03;SOR=0.802;VQSLOD=7.67;culprit=DP	GT:AD:DP:GQ:PL	0/1:67,81:148:99:2175,0,1640
2	61180288	rs76770165	C	T	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-0.409;SB=-9.801e+01;SOR=0.446;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:213,0,100
2	61298684	rs200693095	CA	C	73.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.63;RPA=17,16;RU=A;ReadPosRankSum=-0.144;SB=-1.908e+01;SOR=0.269;STR;VQSLOD=7.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:28:99:111,0,334
2	61310382	rs140620846	C	T	938.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=0.088;SB=-5.090e+02;SOR=0.712;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,41:91:99:967,0,1236
2	61330867	rs373672589	G	A	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.428;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.63;ReadPosRankSum=-0.720;SB=-3.577e+01;SOR=0.293;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,21:38:99:660,0,566
2	61412559	rs777585	C	T	605.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.97;SB=0.00;SOR=5.670;VQSLOD=3.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:634,48,0
2	61413723	rs1809028	A	G	2584.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-1.300e+03;SOR=0.934;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2613,199,0
2	61417617	rs777591	A	G	1377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.44;SB=-6.410e+02;SOR=1.151;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1406,105,0
2	61450454	rs2123111	A	G	991.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.20;SB=-2.021e+02;SOR=2.910;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:75:1020,75,0
2	61522123	rs13014347	T	C	878.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-3.710e+02;SOR=1.609;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:907,66,0
2	61538613	.	G	GAAAAAGAAA	1023.74	PASS	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;QD=34.12;SB=-1.018e+02;SOR=3.258;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:1061,30,0
2	61538615	.	G	A	323.78	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;QD=29.43;SB=-4.176e+01;SOR=3.442;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:352,27,0
2	61552484	rs2593624	T	A	752.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.88;SB=-4.330e+02;SOR=1.179;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:57:781,57,0
2	61558615	rs56399248	T	G	613.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.27;SB=0.00;SOR=5.670;VQSLOD=5.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:642,48,0
2	61575308	rs6722430	A	G	3630.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.01;SB=-2.079e+03;SOR=0.806;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3659,280,0
2	61576517	rs811378	G	A	1578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-7.640e+02;SOR=1.067;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1607,120,0
2	61577435	rs2166720	T	C	2271.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-8.300e+02;SOR=1.739;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2300,169,0
2	61605614	rs10208769	T	A	427.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.52;SB=-2.261e+02;SOR=1.112;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:456,33,0
2	61607510	rs988911	G	A	2950.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-1.119e+03;SOR=1.770;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2979,220,0
2	61644329	rs13028833	C	G	632.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.74;SB=-2.061e+02;SOR=1.863;VQSLOD=3.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:661,48,0
2	61648932	rs375111935	A	ACACG	884.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=64.31;MQ0=0;QD=25.58;SB=-7.897e+01;SOR=3.383;VQSLOD=4.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:922,51,0
2	61709420	rs149904145	C	T	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.026;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.483;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=1.418;SB=-2.402e+01;SOR=1.845;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:339,0,437
2	61709747	rs11360652	GT	G	155.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;RPA=12,11;RU=T;ReadPosRankSum=1.645;SB=0.00;SOR=3.258;STR;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,9:14:2:191,2,0
2	61722519	rs150416626	G	GA	1704.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;RPA=5,6;RU=A;SB=-4.470e+02;SOR=2.259;STR;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:56:99:1742,159,0
2	61729258	rs2305155	A	G	1122.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-5.190e+02;SOR=1.244;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:90:1151,90,0
2	61729268	rs2305156	T	C	1252.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-5.300e+02;SOR=1.308;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:93:1281,93,0
2	61749690	rs3732171	C	T	538.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-1.543e+02;SOR=2.179;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:42:567,42,0
2	61749716	rs3732170	C	T	665.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-1.603e+02;SOR=1.931;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:694,51,0
2	62063093	rs11299120	TA	T	433.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQ0=0;MQRankSum=0.734;POSITIVE_TRAIN_SITE;QD=13.14;RPA=17,16;RU=A;ReadPosRankSum=0.374;SB=-1.770e+02;SOR=0.833;STR;VQSLOD=3.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,27:35:50:471,0,50
2	62066927	rs4672457	A	G	2048.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-1.061e+03;SOR=0.854;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2077,156,0
2	62069358	rs11125895	T	C	1312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=2.351;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-1.178;SB=-6.600e+02;SOR=0.500;VQSLOD=7.26;culprit=DP	GT:AD:DP:GQ:PL	0/1:84,49:133:99:1341,0,2239
2	62069528	rs11125896	C	T	914.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.273;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.175;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.893;SB=-3.380e+02;SOR=0.432;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,34:77:99:943,0,1343
2	62073918	rs58256183	C	T	1296.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.02;SB=-7.110e+02;SOR=1.298;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:96:1325,96,0
2	62081012	rs4270331	A	C	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-2.580e+02;SOR=1.402;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:45:628,45,0
2	62081217	rs1881616	A	G	466.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=0.00;SOR=5.136;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:495,36,0
2	62096492	.	A	AAAC	181.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.12;RPA=5,6;RU=AAC;ReadPosRankSum=0.552;SB=0.00;SOR=0.260;STR;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,5:16:99:219,0,426
2	62100380	rs76248080	G	T	538.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.065;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=-1.224;SB=-3.400e+01;SOR=1.445;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,18:28:99:567,0,284
2	62107376	rs63367862	T	TC	1607.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-1.943e+02;SOR=3.675;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:35:99:1645,102,0
2	62107632	rs2272429	G	A	928.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-4.076e+01;SOR=5.136;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:75:957,75,0
2	62112221	rs35876878	G	GA	845.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.43;SB=-3.400e+02;SOR=1.284;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:37:94:883,94,0
2	62112222	.	G	A	1084.77	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=28.6440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.13;SB=-5.450e+02;SOR=1.209;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1113,81,0
2	62133115	rs4672466	C	T	166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=1.196;SB=-1.766e+00;SOR=1.609;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:195,0,215
2	62228180	rs55785307	C	G	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.311;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-0.168;SB=-1.310e+02;SOR=0.534;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,15:40:99:438,0,736
2	62448855	rs10189468	G	A	592.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.560;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.126;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=1.783;SB=-9.801e+01;SOR=0.275;VQSLOD=7.84;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,20:36:99:621,0,452
2	62450631	rs3811616	A	G	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.412;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=-0.285;SB=-7.300e+01;SOR=0.509;VQSLOD=10.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:355,0,269
2	62728740	rs73934253	A	G	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.982;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=-0.163;SB=-3.101e+01;SOR=1.329;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:363,0,160
2	62729297	rs6756655	T	C	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=-0.857;SB=0.00;SOR=1.179;VQSLOD=10.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,8:13:99:286,0,161
2	62729653	rs6713096	A	G	762.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.704;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-0.785;SB=-3.690e+02;SOR=0.806;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,28:46:99:791,0,493
2	62729674	rs4672527	T	C	796.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.345;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=8.856;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=-0.025;SB=-3.060e+02;SOR=1.204;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,25:43:99:825,0,466
2	62729747	.	G	GA	619.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;RPA=6,7;RU=A;ReadPosRankSum=1.125;SB=-2.430e+02;SOR=0.786;STR;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,25:47:99:657,0,465
2	62733189	rs17854454	C	T	875.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.856;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=8.146;HaplotypeScore=3.6098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=-0.788;SB=-3.080e+02;SOR=1.572;VQSLOD=3.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:77,38:115:99:904,0,1988
2	62733201	rs78110679	A	T	641.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.220;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.972;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.29;ReadPosRankSum=0.855;SB=-2.620e+02;SOR=1.234;VQSLOD=6.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:71,31:102:99:670,0,1923
2	62733253	rs11676567	C	T	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.270;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.237;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=-0.714;SB=-1.230e+02;SOR=1.079;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,22:61:99:634,0,1115
2	62738883	rs6757222	C	T	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=1.855;SB=-1.600e+02;SOR=0.385;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:415,0,567
2	62738931	rs6757448	G	C	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=-0.197;SB=-3.460e+02;SOR=0.717;VQSLOD=9.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,22:48:99:504,0,706
2	62739135	rs4405748	A	C	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.395;SB=-3.500e+01;SOR=1.085;VQSLOD=9.86;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:174,0,168
2	63085848	rs7567923	T	C	547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.92;SB=0.00;SOR=5.421;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:576,42,0
2	63283058	.	C	T	1030.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.90;ReadPosRankSum=1.174;SB=-5.400e+02;SOR=0.747;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,37:61:99:1059,0,640
2	63401973	rs2421862	G	A	864.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.093;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=5.761;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.895;SB=-1.680e+02;SOR=1.624;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,30:64:99:893,0,944
2	63486429	rs992214	C	T	803.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.172;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.853;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=0.593;SB=-3.090e+02;SOR=0.809;VQSLOD=7.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:62,36:98:99:832,0,1760
2	63540523	rs1517402	A	T	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.927;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=0.219;SB=-2.657e-01;SOR=2.584;VQSLOD=6.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:190,0,355
2	63605430	rs2292795	A	G	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.52;ReadPosRankSum=-0.191;SB=0.00;SOR=0.180;VQSLOD=9.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:78:78,0,277
2	63605772	rs2292794	A	G	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.279;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.603;SB=-6.400e+01;SOR=1.022;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:269,0,383
2	63720210	rs7563623	A	G	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.852;SB=0.00;SOR=0.693;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:211,0,194
2	63798333	rs4671068	C	T	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.035;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.089;SB=-2.402e+01;SOR=2.215;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:243,0,254
2	63816672	rs10469944	C	G	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-1.643;SB=0.00;SOR=0.399;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:164,0,329
2	63822785	rs2305157	T	C	862.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.964;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.095;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=-0.028;SB=-4.910e+02;SOR=0.957;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,32:52:99:891,0,528
2	63826528	rs7606045	T	G	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.700;SB=0.00;SOR=0.693;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:173,0,157
2	63849491	rs262496	T	C	709.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.539;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.902;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=2.069;SB=-3.500e+02;SOR=0.313;VQSLOD=7.08;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:34,29:63:99:738,0,949
2	64069732	rs6546029	G	A	756.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.48;SB=-7.597e+01;SOR=3.816;VQSLOD=3.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:785,57,0
2	64085114	rs10183479	G	A	1929.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-1.232e+03;SOR=0.693;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1958,144,0
2	64089748	rs6732746	C	A	618.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-1.245e+02;SOR=2.948;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:647,48,0
2	64118158	.	T	TA	119.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.61;RPA=12,13;RU=A;ReadPosRankSum=-0.863;SB=0.00;SOR=0.269;STR;VQSLOD=7.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,9:26:99:157,0,323
2	64126775	rs78227932	C	A	381.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.299;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=9.611;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-0.632;SB=-1.321e+01;SOR=2.786;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,13:35:99:410,0,576
2	64139901	rs2302809	A	T	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=1.643;SB=0.00;SOR=2.179;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,13:17:97:451,0,97
2	64140301	rs10207847	A	T	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.079;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=1.210;SB=-1.610e+02;SOR=0.257;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,19:25:99:469,0,179
2	64143884	rs13027117	T	C	241.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-0.357;SB=0.00;SOR=0.693;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:270,0,266
2	64160669	.	C	T	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.458;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.03;ReadPosRankSum=-0.258;SB=0.00;SOR=1.931;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,16:22:99:557,0,177
2	64327544	rs329498	G	T	972.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.926;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.969;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-0.266;SB=-4.020e+02;SOR=0.835;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1001,0,733
2	64327592	rs329497	T	C	1125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.597;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=4.109;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-0.809;SB=-7.900e+02;SOR=0.594;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,49:87:99:1154,0,1001
2	64331815	.	CT	C	99.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.93;RPA=17,16;RU=T;ReadPosRankSum=-1.064;SB=-3.100e+01;SOR=0.658;STR;VQSLOD=7.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,12:35:99:137,0,459
2	64682364	rs3770741	A	C	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.368;SB=-6.200e+01;SOR=1.179;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:390,0,235
2	64796479	rs6546087	C	T	468.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.388;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.756;SB=-3.100e+01;SOR=1.091;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:497,0,584
2	64796847	rs2287532	A	G	1575.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.794;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.988;SB=-5.360e+02;SOR=0.641;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,61:121:99:1604,0,1683
2	64796932	rs2287533	G	A	680.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.895;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.123;HaplotypeScore=1.7878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=-0.785;SB=-9.732e-01;SOR=2.484;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:41:99:709,0,595
2	64799937	rs147232569	TAA	T	181.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=14;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;RPA=13,11;RU=A;ReadPosRankSum=0.125;SB=-1.765e+00;SOR=2.303;STR;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:219,0,189
2	64819249	.	T	TAAA	319.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;DP=47;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;RPA=20,23;RU=A;ReadPosRankSum=-0.583;SB=-9.732e-01;SOR=1.981;STR;VQSLOD=6.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,14:47:99:357,0,544
2	65200618	rs4671636	C	A	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.452;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=1.243;SB=-8.400e+01;SOR=1.130;VQSLOD=7.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,13:40:99:374,0,829
2	65216798	rs73934898	C	A	114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.59;ReadPosRankSum=0.981;SB=-7.200e+01;SOR=0.886;VQSLOD=7.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,7:32:99:143,0,654
2	65231063	rs35470885	GT	G	241.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DB;DP=56;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.56;RPA=9,8;RU=T;ReadPosRankSum=0.262;SB=-9.400e+01;SOR=1.035;STR;VQSLOD=6.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,16:56:99:279,0,919
2	65298839	rs17849707	A	G	1272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.771;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-1.138;SB=-5.780e+02;SOR=0.540;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,47:102:99:1301,0,1607
2	65299766	rs55952639	T	C	3699.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-2.068e+03;SOR=0.922;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3728,268,0
2	65309988	rs1420183	T	C	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.492;SB=-1.766e+00;SOR=1.911;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:178,0,125
2	65315880	rs1420184	G	C	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.735;SB=-8.700e+01;SOR=0.602;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:315,0,376
2	65315903	rs1420185	G	A	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.222;SB=-3.000e+01;SOR=1.022;VQSLOD=10.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:234,0,358
2	65473930	rs58944514	AAAATTTTC	A	2141.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.59;ReadPosRankSum=-0.464;SB=-4.390e+02;SOR=0.756;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,20:40:99:2179,0,1922
2	65478371	rs7574628	T	A	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=1.264;SB=0.00;SOR=0.693;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:300,0,300
2	65481008	rs268871	A	C	363.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-0.649;SB=-2.690e+02;SOR=0.405;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:392,0,434
2	65488538	rs268862	G	A	444.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.583;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.044;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.55;ReadPosRankSum=1.203;SB=-3.170e+02;SOR=0.730;VQSLOD=7.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,21:52:99:473,0,961
2	65495570	rs55843720	A	C	82.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.377;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-1.324;SB=-9.732e-01;SOR=0.693;VQSLOD=7.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:99:111,0,489
2	65495571	rs60931828	T	C	77.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-1.324;SB=-9.732e-01;SOR=0.693;VQSLOD=7.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:99:106,0,512
2	65495887	rs268875	G	A	687.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.979;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.620;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=-1.623;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=0.215;SB=-3.730e+02;SOR=0.356;VQSLOD=0.021;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,27:63:99:716,0,1036
2	65496018	rs11424	C	G	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.665;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.660;SB=-9.800e+01;SOR=0.495;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:282,0,324
2	65540905	rs8827	C	G	4245.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-1.870e+03;SOR=1.225;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,123:123:99:4274,319,0
2	65559027	rs2271198	A	G	488.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=-0.999;SB=-2.770e+02;SOR=0.883;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,22:44:99:517,0,602
2	65561392	rs4671658	C	T	771.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.461;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=8.377;HaplotypeScore=2.8657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-1.513;SB=-5.490e+02;SOR=0.491;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,35:51:99:800,0,444
2	65604914	rs268120	A	G	635.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-7.497e+01;SOR=3.500;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:664,51,0
2	66662875	.	CTT	C	153.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;RPA=24,22;RU=T;ReadPosRankSum=0.678;SB=-3.054e+01;SOR=0.836;STR;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:19:99:191,0,131
2	66665146	rs2280334	T	C	1505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.866;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=6.824;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=1.597;SB=-6.620e+02;SOR=0.276;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,57:113:99:1534,0,1702
2	66794834	rs1000756	G	A	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-1.158;SB=-3.300e+01;SOR=0.892;VQSLOD=10.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:177,0,140
2	66798282	rs2861108	G	T	514.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-4.176e+01;SOR=4.174;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:543,42,0
2	67630980	rs3770657	G	A	2850.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-1.537e+03;SOR=0.892;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2879,214,0
2	67631831	rs61740794	G	A	712.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.190;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-0.510;SB=-2.520e+02;SOR=1.025;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,29:63:99:741,0,970
2	67632125	rs3770655	C	T	2005.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-1.053e+03;SOR=0.728;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2034,153,0
2	67637196	rs1569	G	A	1547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=-8.240e+02;SOR=1.118;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1576,114,0
2	68274080	rs11303751	CT	C	408.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.55;RPA=9,8;RU=T;SB=-1.133e+02;SOR=2.049;STR;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:446,48,0
2	68274097	rs9807970	T	C	505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.62;SB=-2.371e+02;SOR=1.609;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:534,39,0
2	68352515	rs6742154	A	C	2252.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-7.450e+02;SOR=2.015;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2281,172,0
2	68358341	rs62145930	T	C	1495.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-3.640e+02;SOR=2.409;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1524,111,0
2	68358653	rs17035004	T	C	868.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-1.633e+02;SOR=3.180;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:897,72,0
2	68385097	rs2044693	A	G	2799.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-1.541e+03;SOR=0.716;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2828,217,0
2	68388823	rs1137930	A	G	1153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-1.237;SB=-6.820e+02;SOR=0.687;VQSLOD=9.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,46:83:99:1182,0,891
2	68389276	.	G	GA	1282.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.878;DP=56;ExcessHet=3.0103;FS=5.036;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;MQRankSum=0.595;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.32;RPA=10,11;RU=A;ReadPosRankSum=-0.161;SB=-4.300e+02;SOR=0.156;STR;VQSLOD=0.366;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,50:56:51:1320,51,0
2	68389481	rs3217588	CTT	C	4014.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.268;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=1.831;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=0.937;SB=-1.891e+03;SOR=0.664;VQSLOD=0.061;culprit=DP	GT:AD:DP:GQ:PL	0/1:91,83:176:99:4052,0,4721
2	68400708	.	A	AT	87.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=0.812;POSITIVE_TRAIN_SITE;QD=7.31;RPA=22,23;RU=T;ReadPosRankSum=0.786;SB=0.00;SOR=1.022;STR;VQSLOD=3.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,7:16:43:125,0,43
2	68401557	rs12691190	A	G	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=0.00;SOR=4.804;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
2	68415767	rs687	G	A	2010.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-1.296e+03;SOR=0.693;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2039,150,0
2	68511506	rs5831925	GA	G	714.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.566;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.42;RPA=12,11;RU=A;ReadPosRankSum=-0.265;SB=-2.438e+02;SOR=1.079;STR;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:3,32:35:37:752,37,0
2	68511584	rs735815	A	G	602.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.652;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.603;SB=-3.900e+02;SOR=0.524;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,25:42:99:631,0,408
2	68546374	rs4671898	T	C	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.34;ReadPosRankSum=0.175;SB=-6.400e+01;SOR=0.760;VQSLOD=6.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:87:87,0,171
2	68592315	rs3732046	A	C	1843.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-3.150e+02;SOR=3.171;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1872,138,0
2	68592584	rs880668	T	C	5572.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-3.334e+03;SOR=0.911;VQSLOD=3.78;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,180:180:99:5601,403,0
2	68592700	rs3770651	A	G	2712.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-6.950e+02;SOR=2.642;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2741,199,0
2	68607947	rs3816281	G	T	1702.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-1.032e+03;SOR=0.877;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1731,129,0
2	68615438	.	A	AG	2281.73	PASS	AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=26.46;RPA=4,5;RU=G;SB=-4.720e+02;SOR=2.722;STR;VQSLOD=3.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:61:99:2319,181,0
2	68620151	rs2289689	C	T	317.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=0.00;SOR=4.804;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:346,27,0
2	68620463	rs2289688	G	A	813.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-2.311e+02;SOR=2.066;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:842,63,0
2	68622914	rs1063479	G	A	2889.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-1.240e+03;SOR=1.584;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2918,214,0
2	68676008	rs4854531	A	T	921.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-4.390e+02;SOR=1.473;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:69:950,69,0
2	68740519	rs11691554	C	T	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.83;ReadPosRankSum=1.575;SB=-8.400e+01;SOR=0.941;VQSLOD=8.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,7:25:99:199,0,628
2	68881938	rs140852128	CA	CAAA,C	463.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.100;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.58;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;RPA=17,19,16;RU=A;ReadPosRankSum=-0.077;SB=-1.330e+02;SOR=0.743;STR;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	1/2:3,20,11:40:99:501,140,364,369,0,570
2	68882468	rs6722313	T	C	2179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=1.216;HaplotypeScore=3.4816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=1.509;SB=-1.281e+03;SOR=0.823;VQSLOD=6.45;culprit=DP	GT:AD:DP:GQ:PL	0/1:84,81:165:99:2208,0,2470
2	69009304	rs2271834	C	T	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.928;SB=-1.350e+02;SOR=0.653;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:387,0,316
2	69043264	rs67399232	CT	C	248.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.02;RPA=11,10;RU=T;ReadPosRankSum=0.993;SB=-6.100e+01;SOR=0.495;STR;VQSLOD=8.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,14:31:99:286,0,388
2	69043266	rs78107572	T	A	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.67;ReadPosRankSum=0.528;SB=-6.200e+01;SOR=0.839;VQSLOD=7.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,12:31:99:297,0,524
2	69043539	rs2271832	G	C	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.90;ReadPosRankSum=0.670;SB=-6.000e+01;SOR=0.784;VQSLOD=9.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:22:99:202,0,381
2	69045158	rs10197806	C	A	473.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.202;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=1.482;SB=-1.050e+02;SOR=0.402;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,17:34:99:502,0,507
2	69046719	rs17036006	G	A	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.786;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.467;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=0.288;SB=-7.700e+01;SOR=1.659;VQSLOD=7.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,13:32:99:345,0,488
2	69049941	rs10177248	T	C	658.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.157;HaplotypeScore=3.5971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-0.202;SB=-2.730e+02;SOR=0.950;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,24:47:99:687,0,717
2	69052991	rs2311421	A	G	885.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-4.276e+01;SOR=5.136;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:75:914,75,0
2	69180161	rs7561266	T	A	1195.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-2.401e+02;SOR=3.026;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1224,93,0
2	69201501	rs4575760	G	A	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.320;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=-0.893;SB=0.00;SOR=0.776;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:405,0,319
2	69201894	rs4417751	C	T	622.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.999;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.985;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.396;SB=-1.290e+02;SOR=1.230;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,23:46:99:651,0,633
2	69204671	rs9808077	A	T	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=0.458;SB=-2.850e+02;SOR=0.580;VQSLOD=7.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,20:58:99:511,0,1127
2	69205023	rs146210841	TAC	T	328.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.478;SB=0.00;SOR=0.307;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:23:99:366,0,711
2	69205043	rs62133353	A	C	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.738;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-0.423;SB=0.00;SOR=0.321;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,7:19:99:215,0,396
2	69205067	rs62133354	T	C	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=0.577;SB=0.00;SOR=0.180;VQSLOD=7.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:86:86,0,274
2	69205942	rs13424275	C	T	606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=0.621;SB=-1.920e+02;SOR=0.892;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:635,0,544
2	69207255	rs62133357	C	T	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQ0=0;MQRankSum=1.352;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=-1.456;SB=-1.493e+02;SOR=0.073;VQSLOD=0.092;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,14:21:99:388,0,205
2	69208021	rs13431582	C	T	870.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.828;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.404;SB=-1.410e+02;SOR=1.038;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,30:53:99:899,0,682
2	69240872	rs116312139	G	C	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.163;SB=-7.300e+01;SOR=0.250;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:256,0,314
2	69272093	rs62135618	G	A	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.908;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.566;SB=-6.400e+01;SOR=0.914;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:335,0,396
2	69297622	rs4591376	C	T	857.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-3.510e+02;SOR=1.528;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:886,66,0
2	69298817	rs13030844	T	C	1055.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.394;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.780;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.086;SB=-5.020e+02;SOR=0.984;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,43:89:99:1084,0,1176
2	69317925	rs4854546	G	A	2291.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-1.234e+03;SOR=1.032;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2320,169,0
2	69318129	rs4241348	T	G	581.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-1.553e+02;SOR=2.419;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:610,45,0
2	69330284	rs4241349	G	A	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-0.686;SB=0.00;SOR=0.693;VQSLOD=10.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:221,0,246
2	69330703	.	G	GA	950.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DP=71;ExcessHet=3.0103;FS=4.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.78;RPA=6,7;RU=A;ReadPosRankSum=0.410;SB=-1.310e+02;SOR=1.456;STR;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,38:71:99:988,0,688
2	69331016	rs13424360	G	T	194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.554;SB=0.00;SOR=0.836;VQSLOD=10.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:223,0,199
2	69420596	rs7584057	T	C	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.979;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=24.2533;MLEAC=1;MLEAF=0.500;MQ=60.30;MQ0=0;MQRankSum=0.901;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.498;SB=-1.770e+02;SOR=0.873;VQSLOD=3.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,21:36:99:521,0,329
2	69565563	rs113734896	TA	T	494.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DB;DP=39;ExcessHet=3.0103;FS=3.108;MLEAC=1;MLEAF=0.500;MQ=60.55;MQ0=0;MQRankSum=1.398;POSITIVE_TRAIN_SITE;QD=13.02;RPA=4,3;RU=A;ReadPosRankSum=-1.127;SB=-1.350e+02;SOR=1.426;STR;VQSLOD=0.105;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,20:39:99:532,0,531
2	69565842	rs11296709	TA	T	407.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.65;RPA=12,11;RU=A;SB=0.00;SOR=5.892;STR;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:445,54,0
2	69565844	rs116730412	A	T	665.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.19;MQ0=0;QD=28.26;SB=0.00;SOR=5.892;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:694,54,0
2	69573029	rs6722492	T	C	1529.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-8.120e+02;SOR=1.201;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1558,111,0
2	69573273	rs4546050	T	C	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.12;SB=0.00;SOR=4.977;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
2	69581850	.	T	TA	89.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.97;RPA=7,8;RU=A;ReadPosRankSum=-0.231;SB=0.00;SOR=0.892;STR;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,5:10:84:127,0,84
2	69586293	rs6546505	A	C	1111.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.74;SB=-3.260e+02;SOR=2.165;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1140,84,0
2	69586370	rs67760762	A	G	465.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.696;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.560;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=0.364;SB=-1.860e+02;SOR=1.096;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,17:46:99:494,0,780
2	69614161	rs6720415	A	G	564.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-2.341e+02;SOR=1.609;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:593,45,0
2	69626342	.	C	CA	131.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=0.000;QD=2.63;RPA=17,18;RU=A;ReadPosRankSum=-0.369;SB=-2.004e+01;SOR=0.507;STR;VQSLOD=4.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,13:56:99:169,0,545
2	69642513	.	C	CT	151.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.43;RPA=12,13;RU=T;ReadPosRankSum=-0.711;SB=-4.907e+01;SOR=0.446;STR;VQSLOD=9.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,10:24:99:189,0,142
2	69659126	rs4453725	A	T	1137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.372;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.955;HaplotypeScore=1.8279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-0.621;SB=-4.470e+02;SOR=0.984;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,41:78:99:1166,0,1001
2	69688649	rs66488533	T	C	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1628;MLEAC=1;MLEAF=0.500;MQ=58.62;MQ0=0;MQRankSum=0.149;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=-0.262;SB=-1.600e+02;SOR=1.110;VQSLOD=2.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,15:29:99:279,0,315
2	69693006	rs9309428	C	T	1565.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=3.189;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-0.552;SB=-8.210e+02;SOR=0.811;VQSLOD=8.02;culprit=DP	GT:AD:DP:GQ:PL	0/1:69,57:126:99:1594,0,1850
2	69693747	rs57171084	T	C	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-0.052;SB=0.00;SOR=0.446;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:320,0,500
2	69709919	rs6721259	A	G	433.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-1.321;SB=-2.580e+02;SOR=0.573;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,20:44:99:462,0,589
2	69741801	rs6757825	C	T	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.468;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=1.822;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=1.580;SB=-1.290e+02;SOR=0.732;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:250,0,177
2	69741854	rs6715776	T	G	631.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-3.300e+02;SOR=1.127;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:660,48,0
2	69746296	rs7603932	C	T	150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=0.951;SB=-1.330e+02;SOR=0.722;VQSLOD=9.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:20:99:179,0,283
2	69747817	rs2312211	G	C	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.552;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.998;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-0.076;SB=-9.600e+01;SOR=0.247;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:363,0,580
2	69758989	rs2276688	C	T	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=2.065;SB=0.00;SOR=0.859;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:214,0,167
2	69759415	rs2276687	G	A	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.479;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-0.711;SB=-9.732e-01;SOR=1.552;VQSLOD=7.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:23:99:255,0,478
2	69771484	rs3771544	C	T	992.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.479;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-0.455;SB=-3.550e+02;SOR=0.641;VQSLOD=9.80;culprit=SOR	GT:AD:DP:GQ:PL	0/1:38,40:78:99:1021,0,1073
2	69784278	rs3821277	T	C	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.206;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=1.742;SB=0.00;SOR=1.329;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:444,0,247
2	70187727	rs12464297	A	C	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.814;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.494;SB=-9.800e+01;SOR=0.941;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:456,0,436
2	70187734	rs75427851	C	A	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.501;SB=-9.000e+01;SOR=0.776;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:441,0,519
2	70188676	rs3796097	T	C	1614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-4.920e+02;SOR=2.256;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1643,129,0
2	70676639	rs538118	A	G	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=2.131;SB=-4.010e+02;SOR=0.668;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,30:68:99:718,0,924
2	70676769	rs71710818	GA	G	661.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;DB;DP=62;ExcessHet=3.0103;FS=5.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;RPA=9,8;RU=A;ReadPosRankSum=-1.020;SB=-2.900e+02;SOR=0.743;STR;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,32:62:99:699,0,605
2	70677994	rs2166975	G	A	886.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.433;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=2.030;SB=-3.720e+02;SOR=0.850;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,32:61:99:915,0,885
2	70678173	rs3732249	C	A	522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.512;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.103;SB=-1.740e+02;SOR=0.309;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,17:38:99:551,0,534
2	70678176	rs3732248	G	A	524.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.706;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.431;HaplotypeScore=3.0058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-0.366;SB=-1.730e+02;SOR=0.341;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:553,0,483
2	70679067	rs3771522	G	A	555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.319;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.670;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-0.115;SB=-5.900e+01;SOR=1.302;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,19:45:99:584,0,766
2	70680211	rs112692567	CT	C	448.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;DB;DP=41;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=1.205;SB=-1.610e+02;SOR=0.315;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,13:41:99:486,0,1295
2	70683410	.	C	T	559.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.44;ReadPosRankSum=1.702;SB=-1.290e+02;SOR=0.665;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,20:45:99:588,0,774
2	70683753	rs2278791	T	C	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.135;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=-0.217;SB=-1.765e+00;SOR=1.071;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:226,0,420
2	70917812	rs10084293	C	T	1053.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.878;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=9.213;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=-0.637;SB=-2.360e+02;SOR=1.923;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,36:69:99:1082,0,809
2	70933659	rs11682965	T	A	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=6.422;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-0.294;SB=-1.185e+02;SOR=0.061;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:252,0,237
2	70995233	rs2287099	G	A	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-0.003;SB=0.00;SOR=0.551;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:153,0,214
2	71004368	rs4533493	A	G	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.55;ReadPosRankSum=-2.792;SB=-1.765e+00;SOR=0.473;VQSLOD=8.47;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:165,0,283
2	71004413	.	C	CA	129.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;DP=18;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.63;RPA=16,17;RU=A;ReadPosRankSum=0.094;SB=-4.711e+01;SOR=0.238;STR;VQSLOD=7.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,8:18:99:167,0,136
2	71004492	rs56316086	T	C	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.528;SB=-1.880e+02;SOR=0.602;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:343,0,540
2	71004494	rs56135050	A	T	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.628;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=0.718;SB=-2.290e+02;SOR=0.693;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:345,0,574
2	71012604	rs7566541	G	A	1463.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=1.508;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-0.572;SB=-9.270e+02;SOR=0.533;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,57:113:99:1492,0,1426
2	71012734	rs7566476	C	G	1063.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.893;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.547;SB=-3.650e+02;SOR=0.900;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,39:85:99:1092,0,1297
2	71017516	rs12713717	A	G	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.530;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.99;ReadPosRankSum=0.131;SB=-5.800e+01;SOR=0.791;VQSLOD=8.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,9:31:99:214,0,645
2	71036082	rs2287100	G	A	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.001;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQ0=0;MQRankSum=-1.304;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.164;SB=0.00;SOR=0.602;VQSLOD=3.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,9:19:99:268,0,355
2	71036189	rs149426278	CA	C	1343.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.396;DB;DP=81;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.53;MQ0=0;MQRankSum=2.350;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.300;SB=-4.730e+02;SOR=0.533;VQSLOD=0.060;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,35:81:99:1381,0,2021
2	71036482	rs2287101	T	C	759.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.484;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-1.579;SB=-2.400e+02;SOR=0.706;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,28:52:99:788,0,594
2	71036758	rs3217143	TCA	T	217.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=1.368;POSITIVE_TRAIN_SITE;QD=12.10;RPA=5,4;RU=CA;ReadPosRankSum=1.857;SB=0.00;SOR=0.368;STR;VQSLOD=2.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,7:18:99:255,0,468
2	71038565	rs17656058	C	T	45.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.58;ReadPosRankSum=0.613;SB=-6.400e+01;SOR=0.850;VQSLOD=9.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,5:10:74:74,0,114
2	71058230	rs57302492	T	A	867.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.324;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=-2.446;SB=-5.690e+02;SOR=0.582;VQSLOD=7.89;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:44,41:85:99:896,0,1137
2	71058306	rs13383830	T	C	921.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=6.328;HaplotypeScore=2.5476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=1.830;SB=-5.590e+02;SOR=0.261;VQSLOD=6.82;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:39,35:74:99:950,0,1099
2	71058795	rs3213747	G	A	818.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.879;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.056;HaplotypeScore=2.6274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.361;SB=-2.200e+02;SOR=0.210;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,27:40:99:847,0,376
2	71058811	rs3213748	C	G	945.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.842;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=1.581;SB=-2.130e+02;SOR=0.534;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,30:49:99:974,0,562
2	71058835	rs741326	A	G	905.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.798;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=1.675;SB=-3.980e+02;SOR=0.324;VQSLOD=7.95;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:34,36:70:99:934,0,981
2	71058906	rs3213749	G	T	1344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.892;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=6.155;HaplotypeScore=4.5881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-0.741;SB=-7.500e+02;SOR=0.607;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,54:105:99:1373,0,1284
2	71060037	rs6712863	A	G	410.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.556;SB=-2.170e+02;SOR=0.929;VQSLOD=10.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,18:26:99:439,0,163
2	71060733	rs72836218	A	C	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=-0.792;SB=-1.765e+00;SOR=2.049;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:405,0,300
2	71061001	rs72836219	T	A	1983.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.034;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=7.305;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=1.010;SB=-9.090e+02;SOR=1.018;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,66:114:99:2012,0,1267
2	71061051	rs41285965	C	T	1758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.130;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=-0.127;SB=-1.005e+03;SOR=0.698;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,65:112:99:1787,0,1323
2	71062535	rs35996262	G	A	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=-0.536;SB=0.00;SOR=0.223;VQSLOD=9.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:89:89,0,228
2	71062833	.	G	GC	4703.73	PASS	AC=2;AF=1.00;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;RPA=1,2;RU=C;SB=-2.097e+03;SOR=0.925;STR;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:107:99:4741,310,0
2	71063066	rs2075225	A	G	1601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-4.440e+02;SOR=2.160;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1630,120,0
2	71127794	rs2234495	C	A	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.431;SB=-7.997e+01;SOR=0.223;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:90:172,0,90
2	71148045	rs7564382	C	T	614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-6.597e+01;SOR=3.611;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:643,48,0
2	71160222	rs2234500	C	G	1386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.094;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=4.643;HaplotypeScore=5.9782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.290;SB=-7.060e+02;SOR=0.328;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,56:87:99:1415,0,805
2	71160421	rs2270262	G	C	640.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.770;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=0.693;SB=-1.400e+02;SOR=0.307;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,22:42:99:669,0,647
2	71162996	rs11685700	A	G	1039.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-3.950e+02;SOR=1.681;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1068,84,0
2	71163051	rs79652147	C	T	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.177;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.096;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-0.190;SB=-3.340e+02;SOR=0.264;VQSLOD=7.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,22:51:99:541,0,883
2	71163086	rs11681642	T	C	696.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.979;HaplotypeScore=2.7307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.318;SB=-3.320e+02;SOR=0.892;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,28:62:99:725,0,819
2	71163111	rs17853498	T	C	831.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.864;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=1.962;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.236;SB=-4.360e+02;SOR=1.002;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,35:71:99:860,0,813
2	71163173	rs17720303	C	T	596.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.293;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=12.914;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=0.655;SB=-1.370e+02;SOR=2.494;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,24:58:99:625,0,878
2	71163225	rs759219	C	T	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.261;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=18.203;HaplotypeScore=7.1834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=1.607;SB=-3.992e+02;SOR=0.027;VQSLOD=3.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,25:42:99:610,0,425
2	71170807	rs2266918	C	T	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=1.311;SB=-9.500e+01;SOR=0.602;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:309,0,355
2	71175511	.	G	GAA	843.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;RPA=4,6;RU=A;ReadPosRankSum=0.251;SB=-2.950e+02;SOR=0.679;STR;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,24:58:99:881,0,1221
2	71175552	.	T	TG	898.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;DP=67;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.83;RPA=4,5;RU=G;ReadPosRankSum=-0.205;SB=-4.500e+02;SOR=0.667;STR;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,29:67:99:936,0,1106
2	71175716	rs12620379	A	G	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=1.093;SB=0.00;SOR=0.495;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:239,0,294
2	71187104	rs114234874	G	A	1229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=8.772;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.662;SB=-6.970e+02;SOR=0.302;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,47:89:99:1258,0,1128
2	71189857	rs76701704	T	C	1403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.321;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=7.336;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=-0.685;SB=-2.060e+02;SOR=1.620;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,47:85:99:1432,0,1012
2	71208844	rs10209944	A	G	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.470;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=0.493;SB=-3.001e+01;SOR=0.602;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:311,0,334
2	71211989	rs3796099	A	G	2391.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;DB;DP=168;Dels=0.00;ExcessHet=3.0103;FS=1.929;HaplotypeScore=5.9485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-0.487;SB=-1.317e+03;SOR=0.536;VQSLOD=6.74;culprit=DP	GT:AD:DP:GQ:PL	0/1:78,90:168:99:2420,0,2098
2	71256409	rs116425915	G	C	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.171;SB=-9.600e+01;SOR=1.802;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:315,0,426
2	71256424	rs400832	T	C	444.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.182;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.565;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=-1.384;SB=-2.400e+02;SOR=0.669;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:473,0,292
2	71265187	.	G	T	384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.549;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.74;ReadPosRankSum=0.807;SB=-1.600e+02;SOR=1.274;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:413,0,333
2	71282522	rs12993301	A	G	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.207;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.189;SB=-5.900e+01;SOR=1.721;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:262,0,279
2	71282633	rs4852757	C	T	627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-2.311e+02;SOR=1.828;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:656,48,0
2	71282696	rs1833352	G	A	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.27;SB=-1.115e+02;SOR=2.303;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:410,30,0
2	71297057	rs888352	C	T	419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.828;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.583;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=0.513;SB=-2.410e+02;SOR=0.321;VQSLOD=7.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,19:55:99:448,0,1008
2	71297695	rs2287328	T	C	1618.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=3.160;HaplotypeScore=5.5574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.305;SB=-1.013e+03;SOR=0.719;VQSLOD=8.02;culprit=DP	GT:AD:DP:GQ:PL	0/1:62,64:127:99:1647,0,1580
2	71297982	rs2287327	C	T	1537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.516;SB=-8.270e+02;SOR=0.687;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,56:101:99:1566,0,1115
2	71305267	rs10187472	T	C	464.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=0.00;SOR=5.136;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:493,36,0
2	71305359	rs2302794	G	A	926.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-4.540e+02;SOR=1.473;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:69:955,69,0
2	71305456	rs6713	C	T	1329.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-7.690e+02;SOR=0.741;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1358,102,0
2	71351403	rs6748672	C	A	889.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.918;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-2.632;SB=-4.660e+02;SOR=0.892;VQSLOD=7.07;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,33:69:99:918,0,939
2	71357417	rs2012479	C	A	936.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-1.066;SB=-3.600e+02;SOR=0.519;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,32:59:99:965,0,706
2	71357634	rs1813348	C	T	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.791;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.480;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.68;ReadPosRankSum=-1.808;SB=-1.040e+02;SOR=1.038;VQSLOD=6.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,10:35:99:262,0,755
2	71357710	rs981947	G	C	348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.385;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=1.442;SB=-1.960e+02;SOR=0.458;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:31:99:377,0,570
2	71360144	rs10199088	A	C	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.929;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-0.845;SB=-1.460e+02;SOR=0.307;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:254,0,271
2	71360195	rs201101221	C	T	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.76;ReadPosRankSum=-0.436;SB=-1.620e+02;SOR=0.693;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:386,0,374
2	71360282	rs13010513	G	A	678.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.894;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=0.583;SB=-2.200e+02;SOR=1.252;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,23:39:99:707,0,384
2	71360625	rs1813160	G	T	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.021;HaplotypeScore=1.9290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-0.988;SB=-5.000e+01;SOR=1.465;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:229,0,270
2	71360723	rs1813159	A	G	349.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.32;SB=-2.401e+02;SOR=1.112;VQSLOD=4.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:27:378,27,0
2	71360735	rs138875226	T	TTCC	716.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;QD=31.37;RPA=2,3;RU=TCC;SB=-2.313e+02;SOR=1.609;STR;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:754,39,0
2	71361332	rs9941620	T	G	740.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.216;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=1.234;SB=-3.070e+02;SOR=0.393;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,30:73:99:769,0,1298
2	71365676	rs357756	G	A	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.158;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.273;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-0.449;SB=-1.120e+02;SOR=0.935;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,16:48:99:472,0,999
2	71375065	.	A	C	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.151;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.754;SB=-1.140e+02;SOR=1.631;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,22:43:99:593,0,548
2	71376999	rs6574	G	A	843.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.004;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=1.840;HaplotypeScore=4.3494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-1.855;SB=-4.450e+02;SOR=1.037;VQSLOD=7.74;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:46,35:81:99:872,0,1297
2	71415479	rs357780	T	C	421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.67;SB=0.00;SOR=4.977;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:450,33,0
2	71417065	rs357777	G	T	1239.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-5.160e+02;SOR=1.609;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1268,93,0
2	71417134	rs357776	C	T	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.732;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=1.360;SB=-3.500e+01;SOR=0.473;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:203,0,291
2	71429725	rs56871884	T	C	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.33;ReadPosRankSum=0.546;SB=-1.580e+02;SOR=0.888;VQSLOD=7.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,19:51:99:453,0,896
2	71429750	rs35398551	A	T	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.393;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.463;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=-0.450;SB=-1.630e+02;SOR=0.255;VQSLOD=7.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,15:35:99:323,0,645
2	71503978	rs59596777	T	C	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=10.659;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-0.450;SB=-1.340e+02;SOR=0.384;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:256,0,156
2	71592535	.	ATTATAT	A	520.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.04;RPA=2,1;RU=TTATAT;ReadPosRankSum=0.105;SB=-1.760e+02;SOR=0.223;STR;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:11:99:558,0,236
2	71607539	rs17693408	G	A	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=1.077;SB=-1.370e+02;SOR=0.892;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:389,0,116
2	71615571	rs2542529	C	T	1160.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=-7.697e+01;SOR=4.680;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1189,90,0
2	71620818	rs6741436	C	T	1379.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-5.950e+02;SOR=1.755;VQSLOD=3.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1408,102,0
2	71626679	rs34538815	CT	C	1396.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;DB;DP=74;ExcessHet=3.0103;FS=9.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.24;RPA=4,3;RU=T;ReadPosRankSum=0.225;SB=-6.660e+02;SOR=0.424;STR;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,47:74:99:1434,0,586
2	71627539	rs3771371	C	T	517.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.524;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=0.500;SB=-1.620e+02;SOR=1.501;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,20:35:99:546,0,371
2	71632976	rs67651141	AGTGCATATTAAGTGGTCTAATAG	A	1821.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;DB;DP=25;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=60.43;MQ0=0;MQRankSum=1.417;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.786;SB=-5.150e-01;SOR=2.303;VQSLOD=0.234;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,8:25:99:1859,0,2819
2	71633275	rs3732233	T	C	778.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.040;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-0.389;SB=-5.020e+02;SOR=0.746;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,37:81:99:807,0,1154
2	71633389	rs6714975	C	T	568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.006;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.655;SB=-1.980e+02;SOR=0.734;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,22:50:99:597,0,771
2	71635931	rs12466025	G	T	1337.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-6.640e+02;SOR=1.179;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1366,99,0
2	71636036	rs12474072	A	G	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=-0.798;SB=-1.765e+00;SOR=3.014;VQSLOD=6.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,10:15:99:352,0,122
2	71645828	rs4852783	G	A	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.413;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-1.310;SB=-1.300e+02;SOR=0.874;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:417,0,359
2	71645854	rs71402979	TGTA	T	629.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;DB;DP=23;ExcessHet=3.0103;FS=6.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=-0.660;SB=-1.905e+02;SOR=0.050;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:23:99:667,0,541
2	71645890	rs4852784	G	C	629.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=0.00;SOR=5.670;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:658,48,0
2	71651939	rs12613800	T	A	901.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.243;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.852;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-1.035;SB=-3.890e+02;SOR=0.589;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,35:84:99:930,0,1332
2	71661855	.	C	CA	86.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.82;RPA=3,4;RU=A;ReadPosRankSum=0.542;SB=-5.500e+01;SOR=0.368;STR;VQSLOD=7.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:124,0,399
2	71708810	rs34707417	T	G	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-0.064;SB=0.00;SOR=0.307;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:163,0,307
2	71708825	rs372225157	T	TATCC	609.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=32.50;RPA=8,9;RU=ATCC;SB=0.00;SOR=5.283;STR;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:14:38:647,38,0
2	71791199	.	C	T	697.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.444;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.42;ReadPosRankSum=-0.330;SB=-2.620e+02;SOR=0.538;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,26:52:99:726,0,812
2	71795152	DYSF	A	T	1042.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=2.600;SB=-5.620e+02;SOR=0.704;VQSLOD=8.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:49,42:91:99:1071,0,1449
2	71796865	rs10205023	C	G	355.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=1.524;SB=0.00;SOR=1.292;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:384,0,228
2	71797176	rs10183967	A	C	733.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.429;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.182;SB=-3.460e+02;SOR=1.018;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,27:54:99:762,0,804
2	71797712	DYSF	G	A	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.025;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=1.070;SB=-3.001e+01;SOR=1.493;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:457,0,166
2	71801267	DYSF	G	C	419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.086;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=-0.378;SB=-1.765e+00;SOR=2.494;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:448,0,232
2	71816977	rs116071054	G	A	1593.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=-1.821e+02;SOR=3.912;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1622,126,0
2	71817003	rs1473228	A	G	1059.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-4.276e+01;SOR=5.211;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1088,81,0
2	71828086	.	A	AT	204.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.24;RPA=4,5;RU=T;ReadPosRankSum=-0.494;SB=0.00;SOR=0.527;STR;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:242,0,281
2	71838597	DYSF	C	A	1024.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.546;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.297;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.463;SB=-6.110e+02;SOR=0.384;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,38:68:99:1053,0,853
2	71847943	rs12995778	C	A	521.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.046;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-0.214;SB=-2.320e+02;SOR=0.889;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:550,0,532
2	71871039	DYSF	A	G	513.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.107;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=8.500;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=2.275;SB=-2.960e+02;SOR=0.105;VQSLOD=6.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,20:34:99:542,0,388
2	71871236	DYSF	A	G	194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.126;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=0.261;SB=-9.732e-01;SOR=1.483;VQSLOD=7.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:223,0,427
2	71891361	DYSF	C	T	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.755;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=12.139;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.568;SB=-3.580e+02;SOR=0.088;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:634,0,829
2	71901286	rs2559081	C	T	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=4.353;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-1.318;SB=-1.370e+02;SOR=0.134;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:388,0,666
2	71906171	DYSF	T	C	886.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.606;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=6.564;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-0.447;SB=-3.280e+02;SOR=0.194;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,33:63:99:915,0,950
2	72359312	rs2241059	A	G	107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=-1.944;SB=-8.297e+01;SOR=0.074;VQSLOD=6.87;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:136,0,173
2	72359518	rs12478279	A	G	1360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.667;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.890;HaplotypeScore=2.5494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-2.048;SB=-4.080e+02;SOR=0.880;VQSLOD=7.41;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:38,50:88:99:1389,0,1008
2	72361865	rs2241058	C	A	678.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.371;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.444;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=2.223;SB=-2.200e+02;SOR=0.471;VQSLOD=7.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,24:40:99:707,0,457
2	72361960	rs2241057	A	G	1041.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-0.228;SB=-5.920e+02;SOR=0.775;VQSLOD=9.83;culprit=SOR	GT:AD:DP:GQ:PL	0/1:31,41:72:99:1070,0,789
2	72692272	rs35274285	A	AAG	4696.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.08;RPA=1,2;RU=AG;SB=-9.710e+02;SOR=2.758;STR;VQSLOD=5.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:91:99:4734,271,0
2	72742083	.	GACAC	G,GAC	2585.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.73;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;RPA=13,11,12;RU=AC;SB=-4.090e+02;SOR=3.160;STR;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,10,57:74:99:2623,2193,2307,327,0,126
2	73195837	rs10565763	TTTCC	T	237.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.21;RPA=5,4;RU=TTCC;ReadPosRankSum=-0.618;SB=-1.764e+00;SOR=1.609;STR;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:15:99:275,0,359
2	73198656	rs151132288	C	T	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.865;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=1.141;SB=-1.765e+00;SOR=1.022;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,7:19:99:230,0,377
2	73339430	rs4143146	T	G	1260.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-5.560e+02;SOR=1.501;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1289,99,0
2	73339708	rs1864488	G	A	1641.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;SB=-6.140e+02;SOR=1.514;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1670,129,0
2	73490163	.	G	A	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.962;SB=-9.000e+01;SOR=0.871;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:31:99:387,0,488
2	73491683	rs4852916	G	A	975.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;SB=-7.697e+01;SOR=4.255;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:75:1004,75,0
2	73635992	rs371789631	C	T	54.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=23.6412;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-3.231;QD=2.19;ReadPosRankSum=2.711;SB=-1.766e+00;SOR=1.075;VQSLOD=0.221;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,4:27:83:83,0,302
2	73650122	rs1881246	T	A	870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=-1.553e+02;SOR=3.014;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:899,66,0
2	73675019	rs66492706	CT	C	248.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.78;RPA=7,6;RU=T;ReadPosRankSum=0.428;SB=-3.500e+01;SOR=0.955;STR;VQSLOD=6.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,14:43:99:286,0,814
2	73675227	rs372423387	T	TCTC	2974.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DB;DP=95;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.99;RPA=1,2;RU=CTC;ReadPosRankSum=0.911;SB=-1.471e+03;SOR=0.557;STR;VQSLOD=1.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,54:95:99:3012,0,2054
2	73675669	rs2037814	T	G	1580.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.904;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=2.676;HaplotypeScore=2.7714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=0.107;SB=-9.040e+02;SOR=0.456;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,54:96:99:1609,0,1087
2	73675844	rs7598901	C	T	1368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-0.468;SB=-7.310e+02;SOR=0.661;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,46:105:99:1397,0,1551
2	73716810	rs3820700	G	A	1074.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.089;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-2.251;SB=-4.050e+02;SOR=0.616;VQSLOD=8.49;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:39,40:79:99:1103,0,1027
2	73717103	rs2017116	G	C	1061.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.870;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-1.226;SB=-5.660e+02;SOR=0.916;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,41:78:99:1090,0,1022
2	73828310	rs1320374	T	C	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.803;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=1.821;SB=-2.801e+01;SOR=0.657;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:283,0,461
2	73828538	rs1052161	G	A	905.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=3.164;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=1.547;SB=-3.820e+02;SOR=1.155;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,34:76:99:934,0,1152
2	73829230	.	G	T	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.38;ReadPosRankSum=-0.675;SB=0.00;SOR=1.473;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:334,0,160
2	73898118	rs7570683	C	T	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.23;ReadPosRankSum=1.973;SB=-1.765e+00;SOR=0.941;VQSLOD=9.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:127,0,248
2	73898359	rs4341964	G	A	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.508;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.000;SB=-4.176e+01;SOR=0.307;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:282,0,126
2	73899955	rs6725284	G	T	690.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.518;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=8.001;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=1.158;SB=-3.220e+02;SOR=0.119;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,27:44:99:719,0,501
2	73900210	rs4637150	A	G	64.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.40;ReadPosRankSum=0.660;SB=-3.101e+01;SOR=0.223;VQSLOD=9.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:93:93,0,286
2	73900918	.	CT	C	250.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=1.333;QD=7.84;RPA=18,17;RU=T;ReadPosRankSum=-2.266;SB=-5.621e+01;SOR=0.495;STR;VQSLOD=1.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,21:32:99:288,0,145
2	73927931	rs4852974	A	G	1316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.425;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.394;SB=-4.360e+02;SOR=1.175;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,41:70:99:1345,0,835
2	73928098	rs2001490	C	G	2997.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=10.574;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=1.174;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=-1.047;SB=-1.614e+03;SOR=0.569;VQSLOD=6.24;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,105:186:99:3026,0,2132
2	73928366	rs2012574	G	C	1759.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=1.232;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-0.233;SB=-9.710e+02;SOR=0.825;VQSLOD=6.44;culprit=DP	GT:AD:DP:GQ:PL	0/1:93,72:165:99:1788,0,2522
2	73957124	rs7210	A	G	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=-0.252;SB=-5.700e+01;SOR=1.256;VQSLOD=7.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:153,0,327
2	73957227	rs13003035	T	A	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=0.389;SB=-3.400e+01;SOR=0.412;VQSLOD=9.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:99:130,0,215
2	73993436	rs34279043	CA	C	56.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.34;RPA=14,13;RU=A;ReadPosRankSum=2.010;SB=-1.767e+00;SOR=0.963;STR;VQSLOD=7.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:94:94,0,234
2	73994074	rs2567599	G	A	1894.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-5.850e+02;SOR=2.147;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1923,141,0
2	74000701	rs2116367	C	T	213.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.487;SB=-8.297e+01;SOR=0.197;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:242,0,126
2	74007136	rs2272051	T	C	1519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.607;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=1.597;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.860;SB=-8.330e+02;SOR=0.820;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,52:101:99:1548,0,1400
2	74007345	rs3813228	A	G	606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.832;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.265;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=0.469;SB=-3.410e+02;SOR=0.425;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,26:58:99:635,0,1011
2	74035880	rs11675635	A	G	350.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=4;POSITIVE_TRAIN_SITE;QD=19.49;SB=-2.161e+02;SOR=0.976;VQSLOD=4.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,17:18:27:379,27,0
2	74057995	rs919629	T	C	801.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.148;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-0.844;SB=-1.750e+02;SOR=0.616;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,29:60:99:830,0,908
2	74077556	rs77000353	G	T	1614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.927;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=1.354;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.520;SB=-8.480e+02;SOR=0.901;VQSLOD=7.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:80,61:141:99:1643,0,2185
2	74086659	rs1055888	T	A	76.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.80;ReadPosRankSum=-0.170;SB=0.00;SOR=0.223;VQSLOD=8.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:105,0,375
2	74087298	rs2303987	A	G	678.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.633;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.166;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.584;SB=-2.240e+02;SOR=1.008;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,25:51:99:707,0,721
2	74128361	rs1653258	T	G	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.859;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.665;SB=-1.580e+02;SOR=0.859;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:534,0,597
2	74128369	rs1632564	G	A	515.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.715;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.523;SB=-1.730e+02;SOR=0.859;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,21:43:99:544,0,613
2	74128391	rs1721241	G	C	707.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=-0.870;SB=-2.740e+02;SOR=0.859;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:736,0,578
2	74128433	rs1050146	C	T	1933.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-9.370e+02;SOR=1.214;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1962,144,0
2	74129474	rs1726025	T	C	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-0.303;SB=0.00;SOR=0.412;VQSLOD=10.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:134,0,207
2	74129664	rs1653256	A	G	910.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.104;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=5.630;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=-1.636;SB=-3.800e+02;SOR=1.313;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,37:85:99:939,0,1292
2	74129712	rs1721243	C	G	1061.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.228;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.810;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.744;SB=-5.720e+02;SOR=0.855;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,41:87:99:1090,0,1342
2	74129895	rs1721244	G	A	895.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.538;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-0.658;SB=-2.690e+02;SOR=0.784;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,34:62:99:924,0,801
2	74135380	rs756127	G	A	612.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.713;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.372;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=0.611;SB=-3.000e+02;SOR=0.402;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,27:62:99:641,0,1062
2	74135797	rs702461	T	C	371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-4.276e+01;SOR=3.442;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:400,30,0
2	74135898	rs756128	A	G	987.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-5.770e+02;SOR=1.085;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:72:1016,72,0
2	74140581	rs891699	A	T	1916.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.85;SB=-2.401e+02;SOR=3.952;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1945,144,0
2	74140789	rs891698	T	C	3027.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-1.378e+03;SOR=1.371;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:94:99:3056,223,0
2	74140888	rs891697	A	C	549.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.793;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-0.417;SB=-1.390e+02;SOR=0.739;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,20:35:99:578,0,440
2	74142164	rs35892339	GA	G	379.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;RPA=5,4;RU=A;SB=-1.283e+02;SOR=1.609;STR;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:15:39:417,39,0
2	74143570	rs1653253	A	C	418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.90;SB=0.00;SOR=5.136;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:447,33,0
2	74174145	rs940297	A	G	745.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-2.061e+02;SOR=2.400;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:774,57,0
2	74178080	rs7564379	T	C	333.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=0.00;SOR=4.804;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:362,30,0
2	74185876	rs4777	A	T	797.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.937;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.835;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.96;ReadPosRankSum=1.904;SB=-3.720e+02;SOR=0.792;VQSLOD=7.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,31:89:99:826,0,1567
2	74361641	rs702464	T	C	425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=0.00;SOR=4.977;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:454,33,0
2	74372678	rs828888	A	C	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.626;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=0.234;SB=-3.100e+01;SOR=1.552;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:288,0,234
2	74383911	rs828852	G	A	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.469;SB=-1.765e+00;SOR=1.371;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:166,0,214
2	74448655	rs7587117	T	C	550.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.241;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=1.079;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=0.195;SB=-1.810e+02;SOR=0.976;VQSLOD=7.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,23:66:99:579,0,1136
2	74466594	rs4853018	G	A	656.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.073;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=1.790;SB=-3.000e+02;SOR=0.892;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:685,0,730
2	74486550	rs1006501	T	A	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:283,0,306
2	74489490	.	CT	C	64.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.424;DP=30;ExcessHet=3.0103;FS=2.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.70;RPA=19,18;RU=T;ReadPosRankSum=1.870;SB=-3.700e+01;SOR=0.197;STR;VQSLOD=3.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,8:30:99:102,0,313
2	74589019	rs741788	A	G	392.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.194;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=1.587;SB=-1.440e+02;SOR=0.430;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:421,0,440
2	74595014	rs909177	G	A	840.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.867;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=1.982;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-1.030;SB=-2.950e+02;SOR=1.013;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,28:79:99:869,0,1459
2	74596168	.	G	GA	512.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DP=16;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.05;RPA=1,2;RU=A;ReadPosRankSum=1.145;SB=-8.600e+01;SOR=2.093;STR;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,13:16:86:550,0,86
2	74597527	rs740277	G	A	2210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=0.190;SB=-1.154e+03;SOR=0.695;VQSLOD=8.71;culprit=DP	GT:AD:DP:GQ:PL	0/1:67,76:143:99:2239,0,1912
2	74604673	rs3213672	C	T	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.101;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.349;SB=-4.130e+02;SOR=0.437;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,25:50:99:690,0,712
2	74604895	rs3815241	T	C	484.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.626;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.416;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-0.173;SB=-3.010e+02;SOR=0.407;VQSLOD=7.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,21:53:99:513,0,886
2	74641624	rs2240444	G	C	709.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.886;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=0.535;SB=-3.790e+02;SOR=0.524;VQSLOD=6.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:56,30:86:99:738,0,1651
2	74649934	rs3732293	A	C	154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.708;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=0.146;SB=-1.450e+02;SOR=0.148;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,10:17:99:183,0,171
2	74682512	rs2268417	C	T	972.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=4.048;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-1.910;SB=-3.250e+02;SOR=1.127;VQSLOD=7.50;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:63,36:99:99:1001,0,1687
2	74686329	rs2270016	C	T	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.464;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=1.633;SB=-1.010e+02;SOR=0.446;VQSLOD=9.94;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,10:19:99:331,0,267
2	74687258	.	A	ACACATTT	3004.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DP=90;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.17;RPA=1,2;RU=CACATTT;ReadPosRankSum=0.069;SB=-1.517e+03;SOR=0.563;STR;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,34:90:99:3042,0,3385
2	74687550	rs8469	T	C	477.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.670;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-0.361;SB=-5.100e+01;SOR=1.402;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,16:41:99:506,0,850
2	74690039	rs2268416	G	A	936.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.816;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.936;SB=-5.480e+02;SOR=0.804;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,36:84:99:965,0,1261
2	74690378	rs1063588	C	T	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.919;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=1.325;SB=-2.450e+02;SOR=0.627;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,22:59:99:580,0,1147
2	74699778	rs1047911	C	A	1028.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.469;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-0.165;SB=-4.800e+02;SOR=0.716;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,41:92:99:1057,0,1458
2	74710491	rs6707475	C	T	896.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.063;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=1.210;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.379;SB=-1.540e+02;SOR=1.129;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,31:66:99:925,0,1096
2	74719910	rs17009980	G	T	636.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.871;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=0.111;SB=-1.310e+02;SOR=0.544;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,20:33:99:665,0,363
2	74720002	rs4853026	C	G	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=-1.653e+02;SOR=1.270;VQSLOD=5.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:412,30,0
2	74725144	rs6546908	T	C	2965.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-1.178e+03;SOR=1.636;VQSLOD=6.80;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2994,220,0
2	74725178	rs17009998	G	A	1154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.933;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-1.505;SB=-5.380e+02;SOR=0.993;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,47:110:99:1183,0,1812
2	74732415	rs2240443	T	G	566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.576;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=6.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.574;SB=-2.210e+02;SOR=1.296;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:595,0,536
2	74746080	rs6709863	C	T	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.786;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=0.636;SB=-3.577e+01;SOR=0.096;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:202,0,331
2	74746322	rs6546909	A	T	895.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.468;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.723;HaplotypeScore=7.1544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-0.685;SB=-5.610e+02;SOR=0.478;VQSLOD=7.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,40:94:99:924,0,1447
2	74755778	rs10779958	A	C	1162.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.20;SB=-3.330e+02;SOR=2.049;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1191,87,0
2	74756111	.	G	GA	1950.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.219;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.01;RPA=10,11;RU=A;ReadPosRankSum=-1.816;SB=-7.070e+02;SOR=1.445;STR;VQSLOD=4.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,73:76:99:1988,171,0
2	74756176	rs2231250	G	C	4049.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-1.784e+03;SOR=1.252;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4078,301,0
2	74761422	rs6707302	T	C	7370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=232;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.77;SB=-4.434e+03;SOR=0.839;VQSLOD=1.27;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,232:232:99:7399,536,0
2	74761539	rs17010021	T	A	5840.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=-2.415e+03;SOR=1.398;VQSLOD=3.85;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5869,427,0
2	74789302	rs79405350	T	A	289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=1.308;SB=0.00;SOR=1.329;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:318,0,158
2	74883794	.	A	G	1099.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.047;DP=79;Dels=0.00;ExcessHet=3.0103;FS=5.774;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.92;ReadPosRankSum=-1.354;SB=-5.570e+02;SOR=1.118;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,43:79:99:1128,0,941
2	74901602	rs363608	C	T	1465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-4.590e+02;SOR=1.814;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1494,108,0
2	74902855	rs2075212	T	A	3807.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-1.736e+03;SOR=1.309;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3836,283,0
2	74902872	rs363609	A	G	3788.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.13;SB=-1.684e+03;SOR=1.350;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3817,277,0
2	75061873	rs663504	C	G	1005.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-4.340e+02;SOR=1.418;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1034,75,0
2	75105798	rs604112	A	G	1892.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8343;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-9.700e+02;SOR=1.123;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1921,138,0
2	75113572	rs2306806	G	A	1295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.492;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-0.203;SB=-8.060e+02;SOR=0.693;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,52:116:99:1324,0,1681
2	75113657	rs2229626	C	T	1140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.788;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.955;SB=-5.910e+02;SOR=0.582;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,44:94:99:1169,0,1413
2	75113789	rs2229627	C	G	992.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.706;HaplotypeScore=3.7781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=1.394;SB=-5.020e+02;SOR=0.915;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,39:93:99:1021,0,1332
2	75115108	rs10194657	A	G	882.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.820;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=5.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.171;SB=-5.380e+02;SOR=0.304;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,35:65:99:911,0,832
2	75116627	rs4853069	C	T	612.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.480;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=1.880;SB=-2.170e+02;SOR=0.421;VQSLOD=7.94;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,24:41:99:641,0,464
2	75185856	rs12366	G	T	1303.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-1.503e+02;SOR=3.855;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1332,105,0
2	75187573	rs3771799	G	A	1307.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-5.870e+02;SOR=1.508;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1336,99,0
2	75187793	rs3821312	A	T	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-4.176e+01;SOR=3.442;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:394,30,0
2	75744918	rs2286995	T	C	647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.338;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-0.188;SB=-1.920e+02;SOR=0.861;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,23:37:99:676,0,413
2	75745081	rs2286994	T	C	1126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.853;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=1.487;SB=-4.870e+02;SOR=0.578;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,38:79:99:1155,0,1113
2	75873733	rs2286238	T	C	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=-0.949;SB=0.00;SOR=1.739;VQSLOD=10.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:390,0,144
2	75882156	.	CT	C	69.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=0.965;POSITIVE_TRAIN_SITE;QD=3.03;RPA=21,20;RU=T;ReadPosRankSum=0.466;SB=-3.801e+01;SOR=0.425;STR;VQSLOD=3.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,10:25:99:107,0,221
2	75938000	rs74454342	C	T	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.023;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=10.405;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.272;SB=-1.080e+02;SOR=1.655;VQSLOD=6.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,14:38:99:365,0,676
2	76976143	rs146142597	C	G	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=1.668;SB=-1.765e+00;SOR=1.022;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:163,0,288
2	77748963	rs5832290	CA	C	166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;MQRankSum=0.555;POSITIVE_TRAIN_SITE;QD=11.86;RPA=18,17;RU=A;ReadPosRankSum=-1.370;SB=-1.002e+02;SOR=0.283;STR;VQSLOD=3.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,13:15:12:203,12,0
2	79252950	rs369221	A	G	578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.94;SB=0.00;SOR=5.549;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:607,45,0
2	79253029	rs385742	T	G	810.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.425;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.906;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.77;ReadPosRankSum=1.230;SB=-7.897e+01;SOR=0.200;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,25:41:99:839,0,494
2	79253150	rs369967	A	G	2401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.422;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=2.031;HaplotypeScore=3.8267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-0.555;SB=-1.196e+03;SOR=0.546;VQSLOD=7.51;culprit=DP	GT:AD:DP:GQ:PL	0/1:73,86:159:99:2430,0,1862
2	79253375	rs425846	C	T	1259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.534;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-0.830;SB=-2.730e+02;SOR=0.627;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,43:78:99:1288,0,927
2	79253818	rs412912	C	G	362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.2408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=1.662;SB=-6.900e+01;SOR=0.793;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:391,0,272
2	79254101	rs396461	T	G	354.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.065;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=8.263;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-0.639;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=0.798;SB=-1.890e+02;SOR=0.608;VQSLOD=0.027;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,14:32:99:383,0,551
2	79254261	rs452267	T	C	708.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-2.351e+02;SOR=1.609;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:737,54,0
2	79255325	rs2290079	G	C	547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.216;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.177;SB=-3.670e+02;SOR=0.446;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,22:41:99:576,0,598
2	79255426	rs383969	G	C	1223.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-4.500e+02;SOR=1.802;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1252,90,0
2	79312414	rs3739144	G	A	1925.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-6.060e+02;SOR=1.938;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1954,150,0
2	79313815	rs2073445	G	T	1585.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-9.120e+02;SOR=0.981;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1614,117,0
2	79314094	rs6723688	G	T	713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-1.245e+02;SOR=3.258;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:742,57,0
2	79314876	rs2073444	C	A	848.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.62;SB=-1.931e+02;SOR=2.303;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:877,66,0
2	79348129	rs11339710	GA	G	692.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.041;DB;DP=48;ExcessHet=3.0103;FS=3.037;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;MQRankSum=0.706;POSITIVE_TRAIN_SITE;QD=16.90;RPA=15,14;RU=A;ReadPosRankSum=-0.279;SB=-7.546e+01;SOR=2.076;STR;VQSLOD=0.340;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,36:48:16:730,16,0
2	79350186	rs3739142	G	A	4617.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-2.534e+03;SOR=0.886;VQSLOD=6.29;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,145:146:99:4646,343,0
2	79350347	rs12228	A	G	2454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-1.066e+03;SOR=1.550;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2483,178,0
2	79350505	rs12072	C	T	591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-2.021e+02;SOR=1.981;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:620,45,0
2	79364979	rs892867	G	A	358.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;SB=0.00;SOR=4.977;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:387,30,0
2	79385033	rs56271358	T	C	718.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.993;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.501;SB=-2.040e+02;SOR=0.859;VQSLOD=8.87;culprit=SOR	GT:AD:DP:GQ:PL	0/1:23,26:49:99:747,0,608
2	79422965	rs1434199	C	G	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-1.224;SB=-2.560e+02;SOR=0.553;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:408,0,318
2	79423062	rs149273901	TTTTG	T	221.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.79;RPA=3,2;RU=TTTG;ReadPosRankSum=2.369;SB=0.00;SOR=1.179;STR;VQSLOD=9.49;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:3,5:12:99:259,0,164
2	79878664	rs3739139	A	G	601.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.579;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-1.062;SB=-3.150e+02;SOR=0.399;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,26:49:99:630,0,665
2	79914590	rs118133156	C	A	550.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=-0.395;SB=-1.910e+02;SOR=0.665;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,22:55:99:579,0,751
2	79914689	rs75100314	G	A	930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.211;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.828;HaplotypeScore=4.7211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.897;SB=-5.400e+02;SOR=0.569;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,37:84:99:959,0,1225
2	79914803	rs78803334	A	C	362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.692;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.032;HaplotypeScore=2.6638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.639;SB=-9.732e-01;SOR=1.938;VQSLOD=6.47;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,12:29:99:391,0,509
2	80529956	rs6733871	T	C	1353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.433;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=1.879;SB=-6.440e+02;SOR=0.584;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1382,0,921
2	80540530	rs56757449	G	C	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=4.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=1.604;SB=-1.765e+00;SOR=2.636;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:288,0,132
2	80620574	rs77092015	G	A	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.006;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.946;SB=-6.800e+01;SOR=0.321;VQSLOD=7.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,9:23:99:232,0,439
2	80772972	rs2276659	G	A	1620.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.491;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=8.785;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.801;SB=-5.240e+02;SOR=1.504;VQSLOD=4.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:68,55:123:99:1649,0,1730
2	80801346	rs2228460	T	C	3338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.905;DB;DP=226;Dels=0.00;ExcessHet=3.0103;FS=2.274;HaplotypeScore=3.5128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=-0.383;SB=-1.887e+03;SOR=0.554;VQSLOD=5.80;culprit=DP	GT:AD:DP:GQ:PL	0/1:103,123:226:99:3367,0,2815
2	80809027	rs17019401	C	G	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.82;ReadPosRankSum=0.826;SB=0.00;SOR=0.180;VQSLOD=8.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,7:24:99:216,0,624
2	80831481	rs2302875	G	A	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.018;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-0.217;SB=-1.830e+02;SOR=1.358;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,22:37:99:611,0,421
2	80831591	rs216662	G	C	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=-2.063;SB=-3.101e+01;SOR=1.085;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:212,0,170
2	80846147	.	C	CT	274.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DP=33;ExcessHet=3.0103;FS=3.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.59;RPA=13,14;RU=T;ReadPosRankSum=-1.417;SB=-3.700e+01;SOR=1.730;STR;VQSLOD=6.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,15:33:99:312,0,335
2	81423424	rs11896220	G	A	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.134;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=-0.238;SB=-3.100e+01;SOR=0.941;VQSLOD=9.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:99:132,0,182
2	81424158	rs6547348	G	T	408.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-1.931e+02;SOR=1.022;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:437,33,0
2	81425437	rs4852611	C	A	288.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.25;SB=-1.603e+02;SOR=1.270;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:317,24,0
2	81428075	rs6724708	C	T	728.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-3.490e+02;SOR=1.358;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:757,54,0
2	84650707	rs2832	A	G	1115.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-1.215e+02;SOR=4.235;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:93:1144,93,0
2	84676163	rs10202632	C	A	888.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-8.097e+01;SOR=4.091;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:917,69,0
2	84676886	.	TAAA	T	842.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.71;RPA=25,22;RU=A;ReadPosRankSum=-0.102;SB=-2.360e+02;SOR=0.990;STR;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,24:42:43:799,43,0
2	84755996	.	A	AT	1198.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.435;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.06;RPA=11,12;RU=T;ReadPosRankSum=-1.281;SB=-2.640e+02;SOR=1.487;STR;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,45:48:99:1236,110,0
2	84756049	rs4832089	G	A	2355.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-9.500e+02;SOR=1.578;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:76:99:2384,181,0
2	84771480	rs1037863	G	A	1985.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-1.155e+03;SOR=0.925;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2014,150,0
2	84771567	rs1542477	C	T	1941.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-8.180e+02;SOR=1.609;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1970,147,0
2	84774893	rs12474026	G	A	534.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.39;SB=0.00;SOR=5.421;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:563,42,0
2	84775673	rs60315854	A	T	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=-0.228;SB=0.00;SOR=1.112;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:311,0,182
2	84800605	rs11891970	C	A	1416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.78;SB=-8.210e+02;SOR=1.201;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1445,102,0
2	84806553	rs6547569	G	A	731.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.27;SB=0.00;SOR=6.091;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:760,60,0
2	84822715	rs6761632	C	T	952.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.20;SB=-8.097e+01;SOR=4.174;VQSLOD=4.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:981,72,0
2	84831767	rs7570369	G	A	480.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=0.00;SOR=5.283;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:509,39,0
2	84834063	rs4276039	T	C	2412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-6.950e+02;SOR=2.179;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:75:99:2441,181,0
2	84834237	rs4441485	T	C	2157.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-6.020e+02;SOR=2.551;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2186,172,0
2	84834375	rs4240194	C	T	351.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=0.00;SOR=4.804;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:380,30,0
2	84896628	rs17708884	G	A	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=0.678;SB=-3.160e+02;SOR=0.637;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,27:66:99:628,0,1023
2	84897517	rs1881095	A	G	951.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=-6.550e+02;SOR=0.811;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:69:980,69,0
2	84899360	rs4832106	G	A	1118.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-3.950e+02;SOR=1.751;VQSLOD=3.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:87:1147,87,0
2	85133216	rs7148	G	A	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.315;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-0.683;SB=-1.040e+02;SOR=0.264;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:341,0,352
2	85133320	rs12471929	C	T	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-0.974;SB=-1.680e+02;SOR=0.602;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:34:99:350,0,540
2	85489280	rs1991738	A	G	554.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-1.633e+02;SOR=2.049;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:583,42,0
2	85489297	rs11686410	T	A	663.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-2.291e+02;SOR=1.828;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:692,51,0
2	85489391	rs139107233	C	CT	1327.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.51;SB=-6.170e+02;SOR=0.922;VQSLOD=4.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1365,81,0
2	85510400	rs34644194	A	G	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.89;ReadPosRankSum=-0.705;SB=0.00;SOR=0.859;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:203,0,165
2	85510425	rs7601117	G	A	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.338;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=-0.707;SB=0.00;SOR=1.244;VQSLOD=10.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:290,0,202
2	85510777	rs7574856	A	G	860.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-0.124;SB=-4.440e+02;SOR=0.769;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,35:59:99:889,0,610
2	85510965	rs7574999	A	G	386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;SB=-1.741e+02;SOR=1.329;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:415,30,0
2	85510978	rs55979428	C	T	67.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.16;ReadPosRankSum=-0.369;SB=-5.600e+01;SOR=0.078;VQSLOD=6.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:96:96,0,201
2	85532205	rs6741339	C	G	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.105;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.40;ReadPosRankSum=1.517;SB=-2.302e+01;SOR=1.536;VQSLOD=7.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:22:99:191,0,415
2	85542686	rs7608881	G	C	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7678;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=1.316;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=-0.353;SB=-2.030e+02;SOR=0.458;VQSLOD=3.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,17:28:99:545,0,325
2	85542718	rs7608892	G	A	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.574;HaplotypeScore=3.9945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=1.655;SB=-2.690e+02;SOR=0.330;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:469,0,256
2	85549868	rs4240199	A	G	541.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.729;SB=-3.680e+02;SOR=0.610;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,22:43:99:570,0,549
2	85549874	rs3637	A	G	562.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.071;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.615;SB=-3.900e+02;SOR=0.602;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,22:41:99:591,0,464
2	85552186	rs7572750	C	A	660.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.634;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=0.727;SB=-2.350e+02;SOR=0.818;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,22:45:99:689,0,702
2	85553784	rs1044973	C	T	2043.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.250;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=1.284;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.710;SB=-1.069e+03;SOR=0.570;VQSLOD=7.47;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,71:150:99:2072,0,2287
2	85554080	rs4247303	G	A	2178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.287;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=4.921;HaplotypeScore=1.8662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.143;SB=-9.920e+02;SOR=1.160;VQSLOD=7.64;culprit=DP	GT:AD:DP:GQ:PL	0/1:75,76:151:99:2207,0,1951
2	85555262	rs10460585	T	G	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=0.620;SB=0.00;SOR=0.818;VQSLOD=10.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:275,0,233
2	85555277	rs10460586	G	A	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.460;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=0.389;SB=0.00;SOR=1.022;VQSLOD=10.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:248,0,163
2	85570186	.	G	A	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-0.812;QD=11.31;ReadPosRankSum=1.035;SB=0.00;SOR=0.446;VQSLOD=1.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:164,0,251
2	85570942	rs9309620	G	C	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=1.465;SB=-3.200e+01;SOR=2.303;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:93:214,0,93
2	85571710	rs4832171	A	G	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.001;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.778;SB=-4.276e+01;SOR=0.184;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:277,0,304
2	85573033	rs908302	G	A	1935.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.516;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=2.131;HaplotypeScore=2.5766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=-0.339;SB=-9.620e+02;SOR=1.021;VQSLOD=7.82;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,75:147:99:1964,0,2059
2	85573049	rs908304	G	A	2268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=3.751;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-0.785;SB=-1.108e+03;SOR=1.038;VQSLOD=7.16;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,83:159:99:2297,0,1946
2	85622059	rs6886	T	C	944.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-0.439;SB=-5.050e+02;SOR=0.807;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,39:71:99:973,0,830
2	85625439	rs11687035	T	G	171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=0.087;SB=0.00;SOR=0.859;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:200,0,157
2	85626581	rs35391999	A	T	421.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=0.097;SB=0.00;SOR=1.845;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:450,0,375
2	85662650	rs6547618	A	G	1198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.985;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=5.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-0.344;SB=-4.530e+02;SOR=0.250;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1227,0,1096
2	85663520	rs4832173	A	C	406.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.193;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.525;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=1.530;SB=-8.100e+01;SOR=1.751;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:435,0,529
2	85769246	rs1078005	G	A	3559.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-2.059e+03;SOR=0.973;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3588,265,0
2	85781318	rs1254896	T	G	1468.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-7.260e+02;SOR=1.345;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1497,108,0
2	85788140	rs1254898	C	T	455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=1.099;SB=-1.550e+02;SOR=0.776;VQSLOD=9.31;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,17:33:99:484,0,454
2	85804540	rs1254899	A	G	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-4.276e+01;SOR=3.442;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:406,30,0
2	85808594	.	C	CA	41.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.20;RPA=15,16;RU=A;ReadPosRankSum=1.715;SB=0.00;SOR=0.148;STR;VQSLOD=8.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:79:79,0,228
2	85818797	rs2289976	G	A	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.834;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.722;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=1.080;SB=-2.657e-01;SOR=2.833;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,11:29:99:341,0,546
2	85818886	rs14976	C	T	848.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.068;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-0.617;SB=-4.460e+02;SOR=0.432;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,36:74:99:877,0,1147
2	85824084	rs2232748	G	C	1200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.371;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.730;HaplotypeScore=5.2824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=1.066;SB=-6.640e+02;SOR=0.560;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,47:111:99:1229,0,1657
2	85826721	rs11891495	G	A	985.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.581;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=2.036;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.954;SB=-3.140e+02;SOR=1.022;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,34:72:99:1014,0,991
2	85828014	rs6733550	T	G	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.555;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.837;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=1.109;SB=-2.020e+02;SOR=1.313;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:565,0,548
2	85848747	rs35865728	CT	C	348.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;DB;DP=44;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.26;RPA=15,14;RU=T;ReadPosRankSum=0.621;SB=-9.200e+01;SOR=0.407;STR;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,21:44:99:386,0,237
2	85863116	rs374603240	GTTTA	G	364.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.09;ReadPosRankSum=1.124;SB=-5.400e+01;SOR=0.859;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:402,0,734
2	85863121	.	A	C	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.262;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.76;ReadPosRankSum=1.768;SB=-2.901e+01;SOR=1.230;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:240,0,322
2	85863122	.	G	A	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.43;ReadPosRankSum=1.814;SB=-3.100e+01;SOR=1.230;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:198,0,295
2	85864710	rs34623563	T	C	368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.132;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-0.975;SB=-1.765e+00;SOR=1.730;VQSLOD=8.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:397,0,335
2	85874845	rs17508843	G	A	283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=-0.066;SB=0.00;SOR=1.329;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:312,0,157
2	85890758	rs2304566	T	C	980.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.430;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=-0.010;SB=-4.510e+02;SOR=0.765;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,32:51:99:1009,0,511
2	85890771	rs893159	T	G	891.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.473;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=0.820;SB=-4.540e+02;SOR=0.577;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,29:46:99:920,0,452
2	85894308	rs3024798	G	T	1130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.844;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=1.528;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-0.219;SB=-7.090e+02;SOR=0.874;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,50:110:99:1159,0,1708
2	85895338	rs2077079	T	G	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.871;SB=-5.900e+01;SOR=1.214;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:335,0,468
2	85921353	rs1866140	G	T	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.167;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.76;ReadPosRankSum=-0.836;SB=-2.501e+01;SOR=0.999;VQSLOD=8.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,11:35:99:300,0,721
2	85921389	rs1866139	G	C	394.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.291;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.413;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-0.546;SB=-8.200e+01;SOR=1.115;VQSLOD=7.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,16:45:99:423,0,856
2	85921734	.	G	GC	417.73	PASS	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.47;RPA=2,3;RU=C;SB=0.00;SOR=4.977;STR;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:455,33,0
2	85921992	rs2043760	T	C	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.093;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.868;SB=-5.900e+01;SOR=1.609;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:451,0,256
2	85924729	rs11127	C	T	2153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.388;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=2.192;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.136;SB=-1.034e+03;SOR=0.516;VQSLOD=7.85;culprit=DP	GT:AD:DP:GQ:PL	0/1:64,76:140:99:2182,0,1796
2	85924899	rs1437742	T	A	1582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=3.895;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-1.328;SB=-6.820e+02;SOR=0.378;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,56:108:99:1611,0,1433
2	85924989	rs1437743	C	T	894.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.082;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.382;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.134;SB=-3.770e+02;SOR=0.346;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,34:62:99:923,0,690
2	85925084	rs1437744	G	A	372.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.805;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=1.440;SB=-4.076e+01;SOR=0.793;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:401,0,103
2	85925529	rs4240200	A	G	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.260;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.117;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=1.253;SB=-3.110e+02;SOR=1.009;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:694,0,595
2	85925667	rs4240201	G	A	740.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.077;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=1.112;SB=-2.130e+02;SOR=1.376;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,24:52:99:769,0,682
2	85925680	rs4240202	T	G	604.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.649;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.876;SB=-2.050e+02;SOR=1.276;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,21:45:99:633,0,569
2	85925756	rs7908	C	G	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-2.668;SB=-1.900e+02;SOR=0.877;VQSLOD=6.89;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,16:37:99:451,0,603
2	85925848	rs12845	C	G	616.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.320;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=0.712;SB=-3.080e+02;SOR=0.459;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,22:37:99:645,0,457
2	85926077	rs375992156	T	TGCG	721.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;DB;DP=23;ExcessHet=3.0103;FS=4.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.37;RPA=1,2;RU=GCG;ReadPosRankSum=0.653;SB=-3.000e+02;SOR=0.132;STR;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:23:99:759,0,412
2	86071393	rs2280316	G	C	433.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=-1.603e+02;SOR=1.911;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:462,33,0
2	86075582	rs11694145	C	T	845.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6023;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-3.660e+02;SOR=1.688;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:63:874,63,0
2	86088311	rs1138484	T	C	1241.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-3.270e+02;SOR=2.242;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:93:1270,93,0
2	86090759	rs371169669	A	G	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.638;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.40;ReadPosRankSum=0.657;SB=-2.901e+01;SOR=1.314;VQSLOD=8.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:389,0,307
2	86094686	rs62147538	C	T	3424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-1.317e+03;SOR=1.898;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3453,253,0
2	86258784	rs2278536	T	G	430.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-1.553e+02;SOR=1.911;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:459,33,0
2	86259443	rs2276626	C	T	526.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.34;SB=-3.930e+02;SOR=0.693;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:39:555,39,0
2	86275985	rs2289239	A	G	2546.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-1.050e+03;SOR=1.550;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2575,187,0
2	86292656	rs311563	C	T	1550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-9.450e+02;SOR=0.773;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1579,117,0
2	86304932	.	GCGCACACACA	G	1526.73	PASS	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.63;SB=0.00;SOR=5.670;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:1564,48,0
2	86305123	rs2288117	T	C	2114.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-1.012e+03;SOR=1.044;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2143,157,0
2	86310110	rs2288118	C	T	1236.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-3.910e+02;SOR=1.981;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1265,93,0
2	86315741	rs2288120	C	T	544.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-2.401e+02;SOR=1.493;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:573,42,0
2	86317037	rs4832242	G	C	1239.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-6.600e+02;SOR=1.096;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:90:1268,90,0
2	86332809	rs4832245	G	A	2089.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-6.700e+02;SOR=2.165;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2118,157,0
2	86334199	rs2367201	G	A	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-2.341e+02;SOR=2.066;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:867,66,0
2	86337930	rs1075622	T	C	539.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-3.876e+01;SOR=4.047;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:568,42,0
2	86343476	rs4832022	C	A	409.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-1.145e+02;SOR=2.303;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:438,33,0
2	86343494	rs4832248	G	A	473.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-7.397e+01;SOR=2.584;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:502,39,0
2	86344367	rs2059353	T	C	1336.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-1.105e+02;SOR=4.294;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1365,99,0
2	86346308	rs6715623	G	A	1820.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8270;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=-6.897e+01;SOR=5.507;VQSLOD=4.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1849,141,0
2	86352010	rs4832250	G	T	775.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-1.931e+02;SOR=2.494;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:804,60,0
2	86352785	rs4618054	G	A	884.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-4.680e+02;SOR=0.997;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:913,69,0
2	86352825	rs6740228	C	T	1086.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-3.750e+02;SOR=1.609;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1115,84,0
2	86359405	rs1559515	G	T	2613.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-1.131e+03;SOR=1.609;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2642,196,0
2	86359745	.	GTT	G	302.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;DP=37;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;RPA=19,17;RU=T;ReadPosRankSum=0.457;SB=-4.400e+01;SOR=2.115;STR;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:37:99:339,0,192
2	86362204	rs7606421	C	T	988.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-1.563e+02;SOR=3.407;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1017,78,0
2	86363074	rs3770069	A	G	5174.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-3.116e+03;SOR=0.910;VQSLOD=4.96;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5203,388,0
2	86363855	rs7558040	G	C	502.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.80;SB=0.00;SOR=5.421;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:531,39,0
2	86364706	rs56274257	TG	T	679.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;RPA=3,2;RU=G;SB=0.00;SOR=5.784;STR;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:19:51:717,51,0
2	86371883	.	T	C	2869.77	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.19;SB=-1.014e+03;SOR=1.968;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2898,226,0
2	86385668	rs1057893	T	C	1682.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-1.593e+02;SOR=4.223;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1711,126,0
2	86385682	rs34945759	TC	T	2386.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.81;MQ0=0;QD=32.66;SB=-2.251e+02;SOR=4.215;VQSLOD=5.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2424,160,0
2	86385886	rs6739460	A	G	2999.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-9.320e+02;SOR=2.277;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3028,223,0
2	86398074	rs2288115	A	G	771.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-7.497e+01;SOR=3.912;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:800,60,0
2	86398291	rs2288113	G	A	379.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-4.176e+01;SOR=3.611;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:408,33,0
2	86406889	rs3770060	G	A	465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.40;SB=-1.463e+02;SOR=2.179;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:36:494,36,0
2	86408385	rs6731995	A	G	1169.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-4.290e+02;SOR=1.923;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1198,93,0
2	86419932	rs12996308	C	G	1066.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-1.225e+02;SOR=4.047;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1095,90,0
2	86422416	rs17551822	T	C	1254.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-7.110e+02;SOR=0.902;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1283,93,0
2	86422421	rs17551815	T	G	1268.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-8.390e+02;SOR=0.693;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:93:1297,93,0
2	86433240	rs10901	C	T	1119.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-7.397e+01;SOR=4.680;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1148,90,0
2	86437551	rs7565645	T	G	319.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-8.097e+01;SOR=2.494;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:348,27,0
2	87048702	rs13001400	T	G	1385.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-2.710e+02;SOR=3.003;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1414,105,0
2	87157296	rs146808789	A	G	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.81;MQ0=2;MQRankSum=-3.236;POSITIVE_TRAIN_SITE;QD=5.10;ReadPosRankSum=-2.667;SB=-1.766e+00;SOR=1.085;VQSLOD=1.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,8:18:99:120,0,311
2	87356057	rs80344669	A	G	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.958;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.65;MQ0=1;MQRankSum=-4.270;QD=3.92;ReadPosRankSum=1.004;SB=-2.203e+01;SOR=0.818;VQSLOD=0.064;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,7:27:99:134,0,544
2	87356099	rs200099198	G	T	72.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.85;MQ0=0;MQRankSum=-2.736;QD=5.20;ReadPosRankSum=-1.980;SB=0.00;SOR=0.188;VQSLOD=0.957;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:101,0,360
2	87357172	rs188041687	T	G	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.568;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=-0.017;POSITIVE_TRAIN_SITE;QD=6.29;ReadPosRankSum=0.448;SB=-1.490e+02;SOR=0.840;VQSLOD=2.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,13:41:99:286,0,821
2	88289368	rs10209326	G	A	257.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.78;SB=-1.205e+02;SOR=1.609;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:286,21,0
2	88328163	rs68101803	C	CTT	195.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;DB;DP=25;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=60.86;MQ0=0;MQRankSum=1.309;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.51;RPA=20,22;RU=T;ReadPosRankSum=0.488;SB=-6.000e+01;SOR=1.911;STR;VQSLOD=0.359;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,10:25:99:233,0,158
2	88328208	rs12328217	G	A	463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-3.177e+01;SOR=3.767;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:492,39,0
2	88367812	rs13391347	G	T	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.786;SB=0.00;SOR=1.022;VQSLOD=10.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:207,0,158
2	88384084	rs920578	C	T	996.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.367;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.954;SB=-3.030e+02;SOR=0.981;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,35:67:99:1025,0,1003
2	88387365	rs78009515	G	A	509.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.039;SB=-3.510e+02;SOR=0.602;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,22:42:99:538,0,491
2	88387403	rs1542088	C	A	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=-0.942;SB=-2.610e+02;SOR=0.793;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:35:99:552,0,441
2	88387557	rs1542087	A	C	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.204;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=0.822;SB=-3.030e+02;SOR=0.465;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:519,0,545
2	88395989	rs2197077	G	C	1165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=5.853;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=0.516;SB=-4.100e+02;SOR=1.350;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,44:82:99:1194,0,1007
2	88396080	rs2919883	A	C	2953.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-1.574e+03;SOR=0.990;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2982,217,0
2	88396120	rs2919882	G	A	2754.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-1.575e+03;SOR=0.807;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2783,208,0
2	88396123	rs2970912	C	G	2870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.708e+03;SOR=0.832;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2899,208,0
2	88396174	rs2919881	T	C	2561.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.50;SB=-1.345e+03;SOR=1.206;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2590,196,0
2	88402511	rs1866946	C	A	447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.194;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.737;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=0.480;SB=-1.205e+02;SOR=0.223;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,16:22:99:476,0,182
2	88402560	rs894197	G	A	640.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.118;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.325;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.090;SB=-3.190e+02;SOR=0.273;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,22:34:99:669,0,357
2	88406108	rs2919862	C	T	1424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=1.688;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-1.313;SB=-7.180e+02;SOR=0.501;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,55:103:99:1453,0,1278
2	88406257	rs2970920	A	G	213.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.134;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=1.367;SB=0.00;SOR=1.022;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:242,0,147
2	88407959	.	T	C	1086.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.985;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.22;ReadPosRankSum=2.054;SB=-6.930e+02;SOR=0.481;VQSLOD=6.07;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,44:67:99:1115,0,673
2	88408172	rs2919858	A	G	696.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=-3.190e+02;SOR=1.519;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:51:725,51,0
2	88409719	rs375953631	A	AGAGT,AGAGTGTGTGT	3409.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-4.110e+02;SOR=3.334;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,20,17:43:99:3447,1112,983,1202,0,1249
2	88410102	rs2289497	C	G	1662.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.64;SB=-2.790e+02;SOR=3.352;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1691,126,0
2	88410168	rs2289498	A	G	610.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=0.00;SOR=5.670;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:639,48,0
2	88411605	rs2919865	A	T	836.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-0.170;SB=-5.050e+02;SOR=0.656;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,35:59:99:865,0,675
2	88411793	rs2970888	C	A	734.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-1.065e+02;SOR=3.258;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:763,60,0
2	88422758	rs2197076	G	A	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=0.400;SB=0.00;SOR=1.022;VQSLOD=10.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:241,0,166
2	88424066	rs2241883	T	C	691.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.991;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.85;ReadPosRankSum=0.188;SB=-4.420e+02;SOR=0.584;VQSLOD=8.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:68,33:101:99:720,0,1718
2	88472791	rs4129190	G	A	1121.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-4.120e+02;SOR=2.012;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1150,84,0
2	88474370	rs2139100	A	G	6188.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=192;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-2.881e+03;SOR=1.109;VQSLOD=4.60;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,192:192:99:6217,460,0
2	88478341	rs34136143	C	A	1496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.734;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=1.030;SB=-7.460e+02;SOR=0.747;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,56:98:99:1525,0,1176
2	88478664	rs3791357	C	T	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.498;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.667;SB=0.00;SOR=0.512;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:252,0,342
2	88482258	rs35051888	G	A	2169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.061;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=3.111;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=-1.524;SB=-1.064e+03;SOR=0.996;VQSLOD=7.28;culprit=DP	GT:AD:DP:GQ:PL	0/1:59,80:140:99:2198,0,1494
2	88485392	rs1878810	G	C	820.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-5.360e+02;SOR=0.765;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:849,60,0
2	88748390	rs4972212	A	T	1926.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-6.140e+02;SOR=2.107;VQSLOD=2.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1955,147,0
2	88825315	.	G	GT	149.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.54;RPA=14,15;RU=T;ReadPosRankSum=0.092;SB=-2.203e+01;SOR=0.869;STR;VQSLOD=6.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,13:35:99:187,0,326
2	88825334	rs35903656	CAAG	C	648.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.17;RPA=4,3;RU=AAG;ReadPosRankSum=0.092;SB=-1.520e+02;SOR=0.693;STR;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:31:99:686,0,705
2	88826184	rs76507069	AT	A	119.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;DB;DP=19;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.04;RPA=10,9;RU=T;ReadPosRankSum=0.328;SB=-2.977e+01;SOR=0.148;STR;VQSLOD=5.63;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,8:19:99:157,0,210
2	88826219	rs56783496	G	A	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=0.100;SB=0.00;SOR=0.693;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:170,0,173
2	88874891	rs1805165	C	A	1345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.856;SB=-8.020e+02;SOR=0.781;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,51:118:99:1374,0,1810
2	88895351	rs7571971	T	C	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=1.139;SB=-3.690e+02;SOR=0.715;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,23:50:99:610,0,765
2	88913273	rs867529	G	C	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=0.825;SB=-1.960e+02;SOR=0.914;VQSLOD=7.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,14:35:99:317,0,561
2	89029010	.	G	T	822.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.697;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.788;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.71;ReadPosRankSum=1.016;SB=-2.850e+02;SOR=1.270;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,32:60:99:851,0,744
2	89082536	rs201698437	T	G	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.363;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.99;MQ0=0;MQRankSum=-4.800;QD=5.51;ReadPosRankSum=0.342;SB=-3.101e+01;SOR=0.495;VQSLOD=0.474;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,12:27:99:177,0,483
2	89082549	.	G	C	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=0;MQRankSum=-4.055;QD=6.62;ReadPosRankSum=0.677;SB=-1.765e+00;SOR=1.022;VQSLOD=0.753;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:154,0,398
2	89082552	.	C	T	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.104;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=50.37;MQ0=0;MQRankSum=-3.917;QD=6.93;ReadPosRankSum=0.317;SB=-1.765e+00;SOR=1.136;VQSLOD=0.962;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:153,0,362
2	89082554	.	C	T	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=50.37;MQ0=0;MQRankSum=-3.917;QD=7.10;ReadPosRankSum=0.227;SB=-1.765e+00;SOR=1.136;VQSLOD=0.949;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:156,0,325
2	89082565	rs72490036	C	G	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4725;MLEAC=1;MLEAF=0.500;MQ=50.05;MQ0=0;MQRankSum=-3.719;QD=7.12;ReadPosRankSum=-0.458;SB=-1.765e+00;SOR=1.230;VQSLOD=1.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:135,0,252
2	89084327	rs335121	G	C	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-0.079;SB=-4.276e+01;SOR=0.169;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:174,0,214
2	89100759	rs73956140	A	C	116.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6297;MLEAC=1;MLEAF=0.500;MQ=52.89;MQ0=0;MQRankSum=-3.975;QD=4.67;ReadPosRankSum=0.408;SB=-2.203e+01;SOR=1.112;VQSLOD=0.765;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,8:25:99:145,0,501
2	89102127	.	G	A	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.333;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.94;MQ0=0;MQRankSum=-3.090;QD=21.88;ReadPosRankSum=-1.070;SB=0.00;SOR=1.981;VQSLOD=1.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,14:19:99:444,0,140
2	89102139	.	G	A	593.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.663;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9987;MLEAC=1;MLEAF=0.500;MQ=50.32;MQ0=0;MQRankSum=-2.898;QD=24.74;ReadPosRankSum=-0.855;SB=0.00;SOR=2.494;VQSLOD=0.515;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,19:24:99:622,0,131
2	89102147	rs79321693	C	T	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.936;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9987;MLEAC=1;MLEAF=0.500;MQ=50.74;MQ0=0;MQRankSum=-0.815;QD=8.71;ReadPosRankSum=0.438;SB=0.00;SOR=0.223;VQSLOD=1.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,8:25:99:246,0,580
2	89102153	rs144040732	G	A	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.173;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.56;MQ0=1;MQRankSum=-0.184;QD=9.88;ReadPosRankSum=-0.302;SB=0.00;SOR=0.317;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,10:28:99:305,0,543
2	89102392	rs77689030	C	A	1317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.153;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7020;MLEAC=1;MLEAF=0.500;MQ=54.07;MQ0=0;MQRankSum=-4.909;QD=16.89;ReadPosRankSum=0.702;SB=-4.790e+02;SOR=0.910;VQSLOD=0.103;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,53:78:99:1346,0,585
2	89102427	rs75022221	G	A	936.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.489;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.6517;MLEAC=1;MLEAF=0.500;MQ=51.71;MQ0=0;MQRankSum=-5.048;QD=19.12;ReadPosRankSum=-1.114;SB=-5.900e+01;SOR=0.907;VQSLOD=0.837;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,32:50:99:965,0,514
2	89102464	rs113574892	A	G	88.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.040;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.83;MQ0=0;MQRankSum=-2.063;QD=2.40;ReadPosRankSum=-0.825;SB=0.00;SOR=0.047;VQSLOD=1.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,6:37:99:117,0,1098
2	89105019	.	A	C	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.654;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=46.95;MQ0=0;MQRankSum=-2.540;QD=16.32;ReadPosRankSum=-0.209;SB=-1.560e+02;SOR=0.495;VQSLOD=1.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,16:21:99:371,0,119
2	89161624	rs370477643	G	A	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.303;SB=0.00;SOR=0.412;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:129,0,206
2	89512775	rs145409842	T	G	1033.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=1;POSITIVE_TRAIN_SITE;QD=31.33;SB=-1.701e+02;SOR=3.126;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1062,81,0
2	89512854	rs77255451	A	C	151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.620;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.42;MQ0=2;MQRankSum=-5.180;POSITIVE_TRAIN_SITE;QD=2.17;ReadPosRankSum=1.541;SB=-5.700e+01;SOR=0.515;VQSLOD=0.370;culprit=QD	GT:AD:DP:GQ:PL	0/1:57,13:70:99:180,0,1548
2	89890648	rs4255962	T	C	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.633;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.48;ReadPosRankSum=0.437;SB=-2.500e+02;SOR=0.616;VQSLOD=6.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:84,27:111:99:636,0,2355
2	89890698	rs4407249	A	G	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.803;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=1.764;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.02;ReadPosRankSum=1.140;SB=-3.170e+02;SOR=0.922;VQSLOD=5.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:94,27:121:99:636,0,2615
2	89890702	rs4254507	T	C	565.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=2.795;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.75;ReadPosRankSum=-0.136;SB=-3.140e+02;SOR=0.997;VQSLOD=5.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:90,29:119:99:594,0,2544
2	89890712	rs4287770	G	T	569.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.472;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.832;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.83;ReadPosRankSum=-0.003;SB=-2.700e+02;SOR=0.910;VQSLOD=5.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:91,27:118:99:598,0,2432
2	89890848	rs140619893	G	A	165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=49.86;MQ0=2;MQRankSum=1.717;POSITIVE_TRAIN_SITE;QD=5.18;ReadPosRankSum=-1.349;SB=0.00;SOR=0.105;VQSLOD=2.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,7:32:99:194,0,717
2	89976550	rs147014451	T	C	857.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.59;SB=-5.350e+02;SOR=0.976;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:66:886,66,0
2	89987087	rs111330053	T	A	752.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-1.175e+02;SOR=3.160;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:781,57,0
2	90025275	rs147187346	G	C	518.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.653e+02;SOR=1.739;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:547,39,0
2	90047833	rs2848403	T	C	342.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.75;MQ0=0;MQRankSum=1.973;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=1.739;SB=-3.240e+02;SOR=0.269;VQSLOD=2.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,17:18:1:368,0,1
2	90108416	rs859744	G	A	1026.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.46;SB=-1.961e+02;SOR=2.833;VQSLOD=4.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1055,81,0
2	90139116	rs201820003	G	A	84.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.88;MQ0=0;MQRankSum=-2.311;QD=4.04;ReadPosRankSum=1.988;SB=-7.500e+01;SOR=0.399;VQSLOD=1.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,6:21:99:113,0,401
2	90139373	rs6760987	T	G	1165.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-6.900e+02;SOR=0.804;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1194,87,0
2	90229260	rs842173	T	C	1377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-8.860e+02;SOR=0.737;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1406,102,0
2	90249092	rs112898704	A	T	2308.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-1.333e+03;SOR=0.811;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2337,175,0
2	90259848	rs842155	T	G	969.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-2.800e+02;SOR=2.226;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:998,72,0
2	90260191	rs842157	T	C	1263.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=-5.770e+02;SOR=1.270;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:93:1292,93,0
2	90414107	rs370204049	G	A	76.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=42.31;MQ0=0;MQRankSum=-1.633;QD=5.91;ReadPosRankSum=0.000;SB=-6.500e+01;SOR=0.892;VQSLOD=1.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,7:13:99:105,0,181
2	90414109	rs373587392	G	A	76.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=42.31;MQ0=0;MQRankSum=-1.633;QD=5.91;ReadPosRankSum=-0.344;SB=-6.500e+01;SOR=0.892;VQSLOD=1.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,7:13:99:105,0,175
2	90464855	rs71218065	C	A	187.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9292;MLEAC=1;MLEAF=0.500;MQ=40.88;MQ0=1;MQRankSum=-1.335;QD=15.65;ReadPosRankSum=1.335;SB=-1.241e+02;SOR=0.892;VQSLOD=2.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,10:12:24:216,0,24
2	91678818	rs201028672	G	A	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.98;MQ0=1;MQRankSum=-3.164;QD=5.62;ReadPosRankSum=-0.610;SB=-1.765e+00;SOR=0.859;VQSLOD=0.876;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:135,0,392
2	91678825	rs199621368	G	A	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.802;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.94;MQ0=1;MQRankSum=-2.694;QD=5.34;ReadPosRankSum=-0.308;SB=-1.765e+00;SOR=1.402;VQSLOD=1.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:99:135,0,401
2	91678867	rs79383010	A	T	691.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.8196;MLEAC=1;MLEAF=0.500;MQ=41.10;MQ0=1;MQRankSum=-3.118;QD=16.47;ReadPosRankSum=0.707;SB=-1.340e+02;SOR=0.483;VQSLOD=1.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,31:42:99:720,0,279
2	91766729	rs4005073	C	CAG	697.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.45;MQ0=0;MQRankSum=-1.070;QD=27.05;ReadPosRankSum=-0.811;SB=-1.120e+02;SOR=1.739;VQSLOD=1.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,14:16:8:734,0,8
2	91767199	rs2558010	A	C	55.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.524;SB=0.00;SOR=0.148;VQSLOD=8.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:84:84,0,313
2	91767507	rs2580541	T	A	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.538;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.600;SB=-6.000e+01;SOR=0.545;VQSLOD=4.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:53,9:62:99:156,0,1471
2	91767630	.	A	G	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=-1.192;QD=14.99;ReadPosRankSum=-0.874;SB=0.00;SOR=0.693;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:268,0,254
2	91777983	.	T	C	194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.23;ReadPosRankSum=1.154;SB=-9.600e+01;SOR=1.179;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:98:223,0,98
2	91777987	.	T	C	153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.778;SB=-9.600e+01;SOR=0.991;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:97:182,0,97
2	91790759	rs11335938	GA	G	227.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DB;DP=24;ExcessHet=3.0103;FS=6.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.49;RPA=7,6;RU=A;ReadPosRankSum=1.186;SB=-9.732e-01;SOR=2.608;STR;VQSLOD=4.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,12:24:99:265,0,307
2	91790793	rs2647780	C	A	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.255;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.909;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.43;ReadPosRankSum=-0.504;SB=-6.500e+01;SOR=1.349;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,20:37:99:636,0,476
2	91791058	rs2557974	G	A	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.643;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.44;ReadPosRankSum=-0.950;SB=-7.897e+01;SOR=0.324;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,14:20:99:457,0,190
2	91791094	rs2557973	G	A	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.686;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.21;ReadPosRankSum=-1.186;SB=-4.176e+01;SOR=0.941;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:88:317,0,88
2	91795234	rs2537005	A	C	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.349;QD=22.43;ReadPosRankSum=-0.577;SB=0.00;SOR=1.802;VQSLOD=2.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:87:275,0,87
2	91795325	rs1640026	A	G	972.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.643;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9957;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=-0.767;QD=20.27;ReadPosRankSum=-0.675;SB=-3.101e+01;SOR=1.203;VQSLOD=2.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,29:48:99:1001,0,559
2	91795381	rs4244683	A	C	2679.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQ0=0;MQRankSum=-0.355;QD=26.53;ReadPosRankSum=1.314;SB=-5.750e+02;SOR=0.627;VQSLOD=1.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,88:101:99:2708,0,192
2	91795739	rs4637168	T	C	2079.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.45;SB=-1.981e+02;SOR=4.294;VQSLOD=3.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2108,154,0
2	91800035	rs2537108	T	C	584.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.277;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.16;ReadPosRankSum=2.021;SB=-6.800e+01;SOR=1.609;VQSLOD=4.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,19:29:99:613,0,236
2	91800106	.	T	C	873.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.395;DP=60;Dels=0.00;ExcessHet=3.0103;FS=5.885;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.56;ReadPosRankSum=-1.095;SB=-4.550e+02;SOR=0.235;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,36:60:99:902,0,729
2	91800155	rs2537118	G	A	989.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.208;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.558;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.85;ReadPosRankSum=0.077;SB=-6.250e+02;SOR=0.312;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1018,0,1000
2	91800211	rs2531389	A	T	944.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.211;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-0.675;SB=-5.300e+02;SOR=0.702;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,33:68:99:973,0,897
2	91800347	rs6708765	G	A	1332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.335;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.34;ReadPosRankSum=0.215;SB=-7.510e+02;SOR=0.757;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,50:108:99:1361,0,1443
2	91800380	.	T	C	1373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.811;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.699;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-1.729;SB=-8.610e+02;SOR=0.569;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,56:114:99:1402,0,1606
2	91800409	rs2430013	T	C	1336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.204;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.727;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-1.413;SB=-8.770e+02;SOR=0.562;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,52:106:99:1365,0,1424
2	91800445	rs2430014	G	A	1240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.79;ReadPosRankSum=-0.517;SB=-5.550e+02;SOR=0.718;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,45:97:99:1269,0,1460
2	91800491	rs2429350	T	A	1014.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.910;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.884;HaplotypeScore=2.8936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.53;ReadPosRankSum=0.251;SB=-3.850e+02;SOR=0.865;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,37:81:99:1043,0,1228
2	91800832	rs1640041	C	T	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.506;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.594;SB=-7.100e+01;SOR=0.751;VQSLOD=5.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:55,15:70:99:320,0,1538
2	91800863	rs1640042	T	G	842.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.690;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.406;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.15;ReadPosRankSum=1.037;SB=-1.650e+02;SOR=1.609;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,28:44:99:871,0,413
2	91800939	rs1640043	T	C	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.360;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.780;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.63;ReadPosRankSum=-0.568;SB=-2.901e+01;SOR=2.694;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:438,0,262
2	91800950	.	A	G	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.737;SB=-2.801e+01;SOR=0.551;VQSLOD=7.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:99:134,0,552
2	91800960	rs1640044	G	C	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=5.315;HaplotypeScore=3.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.52;ReadPosRankSum=0.469;SB=-2.901e+01;SOR=2.303;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:258,0,228
2	91809227	.	A	G	660.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=52.06;MQ0=5;MQRankSum=-2.405;QD=13.49;ReadPosRankSum=-0.180;SB=-4.310e+02;SOR=0.598;VQSLOD=1.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,36:49:99:689,0,290
2	91843403	rs143711313	T	C	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=40.55;MQ0=1;MQRankSum=-2.272;QD=13.57;ReadPosRankSum=1.382;SB=-1.050e+02;SOR=0.793;VQSLOD=1.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,15:19:99:286,0,115
2	91884532	rs58995159	T	G	639.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.10;MQ0=0;MQRankSum=-4.183;QD=17.77;ReadPosRankSum=-0.238;SB=-2.780e+02;SOR=0.960;VQSLOD=1.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,27:36:99:668,0,179
2	91924804	.	T	C	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.10;MQ0=0;MQRankSum=-1.408;QD=14.56;ReadPosRankSum=-0.391;SB=-3.876e+01;SOR=0.293;VQSLOD=2.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:203,0,166
2	91925267	rs4569522	T	C	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.75;MQ0=0;MQRankSum=-3.361;QD=15.21;ReadPosRankSum=-1.854;SB=0.00;SOR=1.179;VQSLOD=1.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:226,0,157
2	91927130	rs144807459	C	G	692.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.424;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6640;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=-2.723;QD=10.66;ReadPosRankSum=2.004;SB=-2.940e+02;SOR=0.575;VQSLOD=0.596;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,27:65:99:721,0,1116
2	91927131	rs146510532	C	G	683.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6640;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=-2.723;QD=10.52;ReadPosRankSum=2.037;SB=-3.280e+02;SOR=0.575;VQSLOD=0.606;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,27:65:99:712,0,1141
2	91927133	rs112119293	GT	G	1023.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.833;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=-2.723;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=2.024;SB=-4.210e+02;SOR=0.575;VQSLOD=2.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,27:65:99:1061,0,1573
2	91927583	rs112716802	C	T	262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.746;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=0;MQRankSum=-3.027;POSITIVE_TRAIN_SITE;QD=5.97;ReadPosRankSum=-1.261;SB=0.00;SOR=0.175;VQSLOD=1.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,13:44:99:291,0,1008
2	91927655	rs1828144	T	A	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=0.959;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-2.066;SB=0.00;SOR=0.446;VQSLOD=2.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:252,0,382
2	91936455	rs75723463	T	G	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.681;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=10.740;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.28;ReadPosRankSum=0.058;SB=-2.302e+01;SOR=3.056;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:419,0,356
2	91936481	rs112641629	TAA	T	289.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.587;DB;DP=18;ExcessHet=3.0103;FS=5.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.10;ReadPosRankSum=0.000;SB=-3.900e+01;SOR=2.303;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:327,0,588
2	91936529	rs79229309	C	G	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-0.592;QD=2.87;ReadPosRankSum=-1.324;SB=-1.514e+01;SOR=0.859;VQSLOD=1.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:77:77,0,379
2	91936691	rs112340987	T	C	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.98;MQ0=0;MQRankSum=-2.389;QD=9.96;ReadPosRankSum=-1.629;SB=-1.890e+02;SOR=0.519;VQSLOD=0.423;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,18:32:99:347,0,420
2	91936724	rs75252532	T	C	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.426;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.28;MQ0=0;MQRankSum=-2.212;QD=9.96;ReadPosRankSum=1.467;SB=-2.380e+02;SOR=0.495;VQSLOD=1.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,18:34:99:367,0,372
2	91936800	rs112029897	C	T	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=-1.855;QD=12.47;ReadPosRankSum=-1.783;SB=-2.120e+02;SOR=0.489;VQSLOD=1.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,15:27:99:365,0,273
2	91936812	rs111572474	T	C	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=-2.002;QD=14.51;ReadPosRankSum=-1.908;SB=-1.290e+02;SOR=0.495;VQSLOD=0.716;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,12:23:99:362,0,273
2	91937662	rs2659395	A	G	705.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.73;MQ0=0;MQRankSum=-1.341;QD=10.69;ReadPosRankSum=0.702;SB=-3.460e+02;SOR=0.756;VQSLOD=1.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,30:66:99:734,0,859
2	91937699	rs2659394	C	T	611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.406;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=-2.815;QD=11.76;ReadPosRankSum=-0.627;SB=-1.310e+02;SOR=0.859;VQSLOD=1.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,23:52:99:640,0,785
2	91937755	rs4362601	G	T	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9989;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=0;MQRankSum=2.230;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=-0.398;SB=-3.501e+01;SOR=0.321;VQSLOD=3.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,8:21:99:220,0,435
2	91937761	.	C	T	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.104;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9989;MLEAC=1;MLEAF=0.500;MQ=57.75;MQ0=0;MQRankSum=-3.519;QD=10.88;ReadPosRankSum=1.178;SB=-1.765e+00;SOR=1.136;VQSLOD=1.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,7:18:99:224,0,351
2	91937775	.	G	A	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.47;MQ0=0;MQRankSum=-3.328;QD=12.55;ReadPosRankSum=0.257;SB=-1.765e+00;SOR=1.426;VQSLOD=1.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:229,0,288
2	91940702	rs116820320	C	T	494.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.51;ReadPosRankSum=0.435;SB=-3.976e+01;SOR=0.693;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,16:23:99:523,0,204
2	91944312	rs115171467	T	C	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.036;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=-1.705;QD=12.04;ReadPosRankSum=1.158;SB=-1.765e+00;SOR=1.179;VQSLOD=1.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,8:20:99:269,0,327
2	91954857	rs2659347	T	C	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.99;MQ0=0;MQRankSum=-2.638;QD=18.38;ReadPosRankSum=-1.470;SB=0.00;SOR=1.609;VQSLOD=1.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:97:212,0,97
2	91954862	rs71422500	G	A	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.09;MQ0=0;MQRankSum=-2.744;QD=19.34;ReadPosRankSum=-1.973;SB=0.00;SOR=1.802;VQSLOD=1.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:81:241,0,81
2	91954890	.	A	G	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.49;MQ0=0;MQRankSum=-3.361;QD=17.21;ReadPosRankSum=-0.711;SB=0.00;SOR=1.179;VQSLOD=1.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:252,0,154
2	91954979	rs200092632	A	G	1351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.500;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=-2.754;QD=20.18;ReadPosRankSum=1.550;SB=-2.400e+02;SOR=0.716;VQSLOD=1.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,42:67:99:1380,0,678
2	91955375	rs520426	G	A	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=54.82;MQ0=0;MQRankSum=-3.295;QD=4.71;ReadPosRankSum=-0.425;SB=-8.000e+01;SOR=0.505;VQSLOD=0.409;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,13:63:99:325,0,1505
2	91962876	rs7567047	G	A	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.07;MQ0=0;MQRankSum=-2.612;QD=3.77;ReadPosRankSum=1.628;SB=-8.639e+00;SOR=1.112;VQSLOD=1.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:81:81,0,249
2	91962879	rs7582758	A	T	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.07;MQ0=0;MQRankSum=-2.612;QD=3.77;ReadPosRankSum=1.556;SB=-8.639e+00;SOR=1.112;VQSLOD=1.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:81:81,0,253
2	91963880	rs114148846	A	G	79.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.25;ReadPosRankSum=0.175;SB=-6.700e+01;SOR=1.022;VQSLOD=9.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:99:108,0,116
2	91964030	rs202152243	G	A	77.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.369;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.53;MQ0=0;MQRankSum=-3.216;QD=4.86;ReadPosRankSum=-0.624;SB=-3.100e+01;SOR=0.446;VQSLOD=1.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:106,0,299
2	91964031	rs200296792	G	A	77.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=0;MQRankSum=-3.343;QD=4.57;ReadPosRankSum=-0.316;SB=-2.501e+01;SOR=0.382;VQSLOD=1.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:106,0,324
2	91964032	rs201095403	C	T	74.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=0;MQRankSum=-3.343;QD=4.40;ReadPosRankSum=-0.316;SB=-3.000e+01;SOR=0.382;VQSLOD=0.578;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:103,0,372
2	91964044	rs4496366	A	G	107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.343;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.43;MQ0=0;MQRankSum=-3.146;QD=5.67;ReadPosRankSum=-0.965;SB=-2.901e+01;SOR=0.784;VQSLOD=0.648;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:136,0,390
2	92030203	rs111799069	TAC	T	185.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.12;MQ0=0;MQRankSum=-2.881;QD=18.57;ReadPosRankSum=-1.113;SB=0.00;SOR=0.693;VQSLOD=1.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:223,0,243
2	92030299	rs78334820	C	T	429.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.629;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.83;MQ0=0;MQRankSum=-3.921;QD=13.43;ReadPosRankSum=1.622;SB=-1.330e+02;SOR=0.990;VQSLOD=0.938;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,16:32:99:458,0,424
2	92030374	rs74944794	G	A	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=-2.538;QD=11.45;ReadPosRankSum=-0.259;SB=-2.350e+02;SOR=0.645;VQSLOD=1.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,17:37:99:452,0,470
2	92030378	rs76780773	T	G	435.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.783;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=0;MQRankSum=-2.740;QD=11.47;ReadPosRankSum=-0.190;SB=-2.350e+02;SOR=0.732;VQSLOD=1.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,18:38:99:464,0,457
2	92030396	rs72815776	C	A	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.671;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=-2.578;QD=10.84;ReadPosRankSum=1.356;SB=-1.660e+02;SOR=0.481;VQSLOD=1.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,15:33:99:386,0,476
2	92030400	rs66674010	C	G	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=-2.578;QD=10.87;ReadPosRankSum=1.393;SB=-1.550e+02;SOR=0.481;VQSLOD=1.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,15:33:99:387,0,412
2	92030453	rs75601290	C	T	395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.91;MQ0=0;MQRankSum=-2.270;QD=17.99;ReadPosRankSum=-0.786;SB=-9.901e+01;SOR=0.446;VQSLOD=2.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,14:22:99:424,0,239
2	92030462	rs76355586	G	A	347.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.063;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=-2.624;QD=18.30;ReadPosRankSum=-0.372;SB=-2.701e+01;SOR=1.061;VQSLOD=1.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:19:99:376,0,273
2	92030511	rs140414250	A	C	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=53.29;MQ0=0;MQRankSum=-2.515;QD=14.98;ReadPosRankSum=-1.113;SB=-1.765e+00;SOR=1.911;VQSLOD=0.993;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:178,0,138
2	92031291	rs75005588	A	C	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.111;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=-3.879;QD=3.46;ReadPosRankSum=0.625;SB=-5.000e+01;SOR=0.569;VQSLOD=0.886;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,4:17:87:87,0,326
2	92031304	rs75106422	C	T	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.014;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.17;MQ0=0;MQRankSum=-3.744;QD=3.67;ReadPosRankSum=-0.185;SB=-5.200e+01;SOR=0.693;VQSLOD=1.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:87:87,0,308
2	92075709	rs11240891	A	G	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.988;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9619;MLEAC=1;MLEAF=0.500;MQ=49.58;MQ0=0;MQRankSum=-4.020;QD=8.25;ReadPosRankSum=1.736;SB=0.00;SOR=0.446;VQSLOD=0.628;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:185,0,384
2	92269424	rs62155171	A	G	274.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=24.98;SB=-6.197e+01;SOR=2.494;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:303,24,0
2	92269445	rs62155172	A	G	333.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=25.68;SB=-1.045e+02;SOR=2.147;VQSLOD=3.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:362,27,0
2	92269454	rs62155173	A	G	299.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9993;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=24.98;SB=-9.951e+01;SOR=1.981;VQSLOD=3.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:328,27,0
2	92269467	rs62155174	T	C	366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9926;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=24.45;SB=-1.841e+02;SOR=1.473;VQSLOD=2.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:395,30,0
2	92269469	rs62155175	T	G	364.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9933;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=24.32;SB=-1.751e+02;SOR=1.473;VQSLOD=2.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:393,30,0
2	92269502	rs62155176	T	C	375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=17.89;SB=-3.170e+02;SOR=0.784;VQSLOD=2.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:30:404,30,0
2	92269519	rs4109155	G	A	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5565;MLEAC=1;MLEAF=0.500;MQ=43.04;MQ0=0;MQRankSum=-1.760;QD=12.56;ReadPosRankSum=-0.135;SB=-2.370e+02;SOR=0.804;VQSLOD=1.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,17:21:59:292,0,59
2	92269544	rs3967947	T	C	345.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4063;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=20.34;SB=-2.770e+02;SOR=1.061;VQSLOD=2.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:19:27:374,27,0
2	92269551	rs62155179	A	G	374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5739;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=20.82;SB=-2.510e+02;SOR=1.179;VQSLOD=2.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:30:403,30,0
2	92269560	rs62155181	C	T	350.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=23.38;SB=-1.463e+02;SOR=1.911;VQSLOD=2.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:379,30,0
2	92276043	rs71258108	A	G	443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=22.19;SB=-1.025e+02;SOR=2.531;VQSLOD=1.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:21:39:472,39,0
2	92296776	rs77234483	T	A	287.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=0;QD=28.78;SB=-7.297e+01;SOR=1.609;VQSLOD=4.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:316,24,0
2	92296805	rs62149075	C	G	332.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=30.25;SB=-1.861e+02;SOR=0.859;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:361,27,0
2	92296813	rs74328256	A	G	338.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=26.06;SB=-2.461e+02;SOR=0.836;VQSLOD=3.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:367,27,0
2	92296828	rs62149076	G	T	341.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=22.79;SB=-2.311e+02;SOR=1.112;VQSLOD=2.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:27:370,27,0
2	92296844	rs62149077	A	G	352.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=23.52;SB=-2.391e+02;SOR=1.112;VQSLOD=2.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:27:381,27,0
2	92296884	rs76871004	C	A	292.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=29.28;SB=-7.797e+01;SOR=2.303;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:321,24,0
2	92296886	rs76212018	A	G	304.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;QD=30.48;SB=-7.497e+01;SOR=2.303;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:333,24,0
2	92305597	rs62145609	A	C	418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9863;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;QD=24.63;SB=-1.533e+02;SOR=2.179;VQSLOD=3.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:36:447,36,0
2	92305618	rs62145610	T	A	553.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=23.07;SB=-2.411e+02;SOR=2.124;VQSLOD=0.829;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:48:582,48,0
2	92305622	rs62145611	C	A	507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.48;MQ0=0;QD=24.18;SB=-2.281e+02;SOR=1.828;VQSLOD=3.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:24:39:483,39,0
2	92305635	rs62145613	A	G	497.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.529;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7195;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;MQRankSum=-0.921;QD=19.91;ReadPosRankSum=0.702;SB=-2.051e+02;SOR=2.030;VQSLOD=1.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,23:25:6:525,6,0
2	92309553	rs62147161	C	A	231.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=21.07;SB=-1.075e+02;SOR=0.859;VQSLOD=2.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:260,21,0
2	92309558	rs79171402	T	G	234.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=23.48;SB=-1.115e+02;SOR=1.085;VQSLOD=3.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:21:263,21,0
2	92309574	rs78700571	C	G	234.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=21.35;SB=-1.125e+02;SOR=0.859;VQSLOD=2.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:263,21,0
2	92309576	rs62147162	T	G	234.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.479;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;MQRankSum=1.460;QD=21.35;ReadPosRankSum=0.477;SB=-1.125e+02;SOR=0.793;VQSLOD=2.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,10:11:21:263,21,0
2	92309615	rs76956840	GT	G	563.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=27.66;RPA=2,1;RU=T;SB=-2.930e+02;SOR=0.693;STR;VQSLOD=4.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:15:42:601,42,0
2	92309625	rs76222286	T	C	299.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=1.339;QD=17.64;ReadPosRankSum=-0.569;SB=-2.051e+02;SOR=0.551;VQSLOD=2.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,14:17:15:328,0,15
2	92309637	rs62147163	C	A	382.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=22.52;SB=-2.610e+02;SOR=1.061;VQSLOD=2.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:30:411,30,0
2	92309703	rs199792844	T	C	151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9994;MLEAC=1;MLEAF=0.500;MQ=45.80;MQ0=0;MQRankSum=0.623;QD=13.80;ReadPosRankSum=0.820;SB=-7.300e+01;SOR=1.230;VQSLOD=2.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:64:180,0,64
2	92309712	rs149747451	G	A	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9955;MLEAC=1;MLEAF=0.500;MQ=45.80;MQ0=0;MQRankSum=0.623;QD=13.52;ReadPosRankSum=0.381;SB=-6.800e+01;SOR=1.230;VQSLOD=2.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:64:177,0,64
2	92309716	rs113772099	A	C	35.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9953;MLEAC=1;MLEAF=0.500;MQ=45.80;MQ0=0;MQRankSum=-0.623;QD=3.25;ReadPosRankSum=0.191;SB=-3.200e+01;SOR=0.346;VQSLOD=2.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:64:64,0,173
2	95513809	rs377339791	CAT	C	220.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.29;MQ0=0;MQRankSum=-3.669;QD=9.20;ReadPosRankSum=1.968;SB=-8.500e+01;SOR=0.804;VQSLOD=0.184;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,6:24:99:258,0,926
2	95513820	rs376155492	C	T	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.6869;MLEAC=1;MLEAF=0.500;MQ=43.11;MQ0=2;MQRankSum=-2.733;QD=3.72;ReadPosRankSum=0.385;SB=-7.200e+01;SOR=0.616;VQSLOD=0.876;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,9:33:99:151,0,441
2	95537245	rs4854234	C	G	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.079;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=0.182;SB=-1.050e+02;SOR=0.209;VQSLOD=7.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,11:26:99:246,0,483
2	95537622	rs11164112	A	G	377.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.554;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=0.300;SB=-1.830e+02;SOR=0.511;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:406,0,708
2	95542112	rs10191464	C	T	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=-1.242;SB=0.00;SOR=0.412;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:122,0,214
2	95816017	rs55921067	T	TA	52.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;DB;DP=30;ExcessHet=3.0103;FS=5.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.78;RPA=19,20;RU=A;ReadPosRankSum=-0.088;SB=-2.877e+01;SOR=0.045;STR;VQSLOD=5.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:30:90:90,0,172
2	95830652	rs6719142	T	C	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-0.309;SB=-5.600e+01;SOR=0.446;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:177,0,253
2	95830737	.	C	CA	410.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;RPA=5,6;RU=A;ReadPosRankSum=-1.351;SB=-1.640e+02;SOR=0.608;STR;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,17:38:99:448,0,509
2	95847040	rs10578519	TGCG	T	3910.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.17;RPA=3,2;RU=GCG;SB=-1.502e+03;SOR=1.296;STR;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:74:99:3948,208,0
2	95945568	rs7585914	G	A	270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.955;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=-0.089;SB=-1.310e+02;SOR=0.346;VQSLOD=7.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,12:29:99:299,0,483
2	95945830	rs7586229	G	T	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.816;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.024;SB=-1.230e+02;SOR=0.602;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:333,0,428
2	95947085	.	A	G	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.429;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.281;HaplotypeScore=4.0904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-1.212;SB=-2.570e+02;SOR=0.583;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:430,0,363
2	95947099	rs72819488	G	A	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.960;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.483;HaplotypeScore=4.9917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.615;SB=-1.600e+02;SOR=1.179;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:323,0,395
2	95952177	rs7602232	C	G	2606.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-1.664e+03;SOR=0.693;VQSLOD=4.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2635,190,0
2	95963242	rs2248415	C	G	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=1.242;SB=-1.767e+00;SOR=2.303;VQSLOD=6.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:94:94,0,167
2	96012907	rs7602807	C	G	470.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-0.667;SB=-2.360e+02;SOR=0.730;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,19:49:99:499,0,743
2	96076409	rs6577014	C	T	960.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-5.110e+02;SOR=0.693;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:75:989,75,0
2	96185714	rs35256168	C	T	563.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.022;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.950;SB=-3.330e+02;SOR=0.711;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,25:40:99:592,0,409
2	96185834	.	C	G	168.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.153;SB=-1.310e+02;SOR=0.777;VQSLOD=8.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:20:99:197,0,394
2	96212699	.	G	A	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=-2.050;QD=9.99;ReadPosRankSum=-0.569;SB=-8.900e+01;SOR=0.665;VQSLOD=1.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,9:21:99:238,0,360
2	96504594	rs11676926	C	T	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.456;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.209;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=0.333;SB=-2.250e+02;SOR=0.503;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,17:42:99:475,0,628
2	96517760	rs79580617	T	A	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=0;MQRankSum=-0.874;QD=11.14;ReadPosRankSum=0.069;SB=0.00;SOR=0.569;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:173,0,250
2	96517783	rs113889919	CTAA	C	452.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.58;MQ0=0;MQRankSum=-1.581;POSITIVE_TRAIN_SITE;QD=30.18;ReadPosRankSum=0.000;SB=0.00;SOR=1.112;VQSLOD=3.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:16:99:490,0,258
2	96517961	rs77337934	T	A	670.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.245;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.6583;MLEAC=1;MLEAF=0.500;MQ=47.55;MQ0=1;MQRankSum=-3.899;QD=17.20;ReadPosRankSum=0.129;SB=-2.140e+02;SOR=0.859;VQSLOD=1.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,28:39:99:699,0,265
2	96517971	.	C	T	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.281;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.8486;MLEAC=1;MLEAF=0.500;MQ=48.39;MQ0=1;MQRankSum=-2.353;QD=5.39;ReadPosRankSum=-0.700;SB=-5.200e+01;SOR=0.412;VQSLOD=1.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,10:35:99:217,0,696
2	96523006	rs12717776	A	C	468.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=1;POSITIVE_TRAIN_SITE;QD=26.04;SB=-1.851e+02;SOR=1.739;VQSLOD=5.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:36:497,36,0
2	96523009	rs12717777	A	C	472.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=1;POSITIVE_TRAIN_SITE;QD=26.26;SB=-2.061e+02;SOR=1.739;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:36:501,36,0
2	96523047	rs12717778	A	G	543.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=2;POSITIVE_TRAIN_SITE;QD=22.66;SB=-2.950e+02;SOR=1.329;VQSLOD=3.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:42:572,42,0
2	96523096	rs10211258	T	C	506.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=2;POSITIVE_TRAIN_SITE;QD=22.03;SB=-3.670e+02;SOR=0.784;VQSLOD=3.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:39:535,39,0
2	96548068	rs11695514	C	T	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.612;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.77;MQ0=0;MQRankSum=1.608;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=-0.684;SB=-1.230e+02;SOR=0.105;VQSLOD=0.089;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,8:22:99:234,0,351
2	96553772	rs4907218	G	C	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.06;MQ0=0;MQRankSum=-4.400;POSITIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=-0.044;SB=-1.060e+02;SOR=0.551;VQSLOD=1.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,8:32:99:247,0,638
2	96555522	rs12471925	C	A	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.96;MQ0=0;MQRankSum=-4.231;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.312;SB=-9.900e+01;SOR=0.631;VQSLOD=2.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,11:26:99:368,0,380
2	96583823	.	G	A	72.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.10;MQ0=0;MQRankSum=-2.965;QD=6.62;ReadPosRankSum=0.551;SB=-2.302e+01;SOR=0.693;VQSLOD=0.755;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:101,0,187
2	96610768	rs376183764	T	G	62.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.97;MQ0=0;MQRankSum=-2.823;QD=6.28;ReadPosRankSum=-1.242;SB=0.00;SOR=1.085;VQSLOD=1.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,6:10:91:91,0,139
2	96610805	rs371613132	AAGAAAG	A	361.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.51;MQ0=0;MQRankSum=-0.395;QD=15.07;ReadPosRankSum=-0.988;SB=-1.981e+01;SOR=0.495;VQSLOD=2.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:13:99:399,0,263
2	96610836	rs11893977	T	C	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.00;MQ0=0;MQRankSum=-1.057;QD=18.51;ReadPosRankSum=1.454;SB=-1.400e+02;SOR=0.779;VQSLOD=2.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,22:29:99:565,0,197
2	96610952	rs62154595	T	C	993.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.774;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.32;MQ0=0;MQRankSum=-2.464;QD=17.75;ReadPosRankSum=-1.761;SB=-6.790e+02;SOR=0.627;VQSLOD=1.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,42:56:99:1022,0,265
2	96611078	rs62154597	T	G	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.06;MQ0=0;MQRankSum=0.000;QD=24.71;ReadPosRankSum=-0.230;SB=0.00;SOR=2.494;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:46:300,0,46
2	96616442	rs74960926	C	A	99.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.111;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=0;MQRankSum=-3.395;QD=5.54;ReadPosRankSum=0.935;SB=-7.200e+01;SOR=0.412;VQSLOD=1.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,8:18:99:128,0,266
2	96616448	rs76503749	G	T	108.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=49.61;MQ0=0;MQRankSum=-3.524;QD=5.72;ReadPosRankSum=-0.327;SB=-8.600e+01;SOR=0.668;VQSLOD=1.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,9:19:99:137,0,253
2	96617155	rs76752473	A	G	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.893;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.22;MQ0=0;MQRankSum=-4.198;QD=8.44;ReadPosRankSum=0.176;SB=-8.600e+01;SOR=0.859;VQSLOD=0.647;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,10:27:99:256,0,443
2	96617323	rs78078957	G	C	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.98;MQ0=0;MQRankSum=-3.195;QD=5.06;ReadPosRankSum=0.000;SB=-9.732e-01;SOR=1.508;VQSLOD=1.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:94:94,0,259
2	96617324	rs77840453	G	A	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.98;MQ0=0;MQRankSum=-3.195;QD=4.75;ReadPosRankSum=0.000;SB=-9.732e-01;SOR=1.508;VQSLOD=1.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:90:90,0,262
2	96657555	.	G	T	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=-0.783;QD=16.99;ReadPosRankSum=-0.981;SB=0.00;SOR=0.914;VQSLOD=2.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:334,0,266
2	96657575	rs62155511	A	G	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=0.605;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=2.065;SB=0.00;SOR=0.551;VQSLOD=2.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:159,0,194
2	96679384	rs2579517	C	T	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=0.847;SB=-7.000e+01;SOR=0.741;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:371,0,197
2	96679740	rs2438978	G	C	887.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=4.701;HaplotypeScore=4.6820;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=-1.042;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=0.329;SB=-2.850e+02;SOR=1.276;VQSLOD=0.139;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,35:75:99:916,0,1194
2	96684876	rs2579516	A	G	489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-2.950e+02;SOR=0.693;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:518,39,0
2	96687426	rs200675258	CTG	C	2233.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=32.23;SB=-2.391e+02;SOR=3.912;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:53:99:2271,138,0
2	96687429	rs199741104	C	G	1831.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=2;QD=29.43;SB=-1.851e+02;SOR=3.958;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,47:49:99:1860,138,0
2	96780716	rs2229169	T	G	1099.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.249;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.767;HaplotypeScore=2.8659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-0.460;SB=-5.440e+02;SOR=1.015;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1128,0,1301
2	96780986	rs67393864	C	CTCCTCCTCT	2269.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;DB;DP=57;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.83;RPA=1,2;RU=TCCTCCTCT;ReadPosRankSum=1.127;SB=-9.000e+02;SOR=1.104;STR;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,23:57:99:2307,0,2588
2	96781986	rs3111873	G	C	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=-0.794;SB=0.00;SOR=1.981;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:84:288,0,84
2	96789787	rs893173	T	C	889.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.848;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.667;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=0.159;SB=-4.850e+02;SOR=0.310;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,32:61:99:918,0,849
2	96795608	rs1657502	T	G	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.169;SB=-1.020e+02;SOR=0.527;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:246,0,204
2	96795714	rs749459	G	A	274.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.315;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.494;SB=-3.400e+01;SOR=0.512;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:303,0,308
2	96795857	rs749458	T	C	1240.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-5.540e+02;SOR=1.501;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1269,96,0
2	96795944	rs749457	A	G	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.092;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=1.226;SB=-2.501e+01;SOR=1.802;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:273,0,321
2	96798510	rs1168966	G	A	493.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.583;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=0.078;SB=-9.500e+01;SOR=0.604;VQSLOD=8.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,19:51:99:522,0,1021
2	96934504	rs62153033	T	C	572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.167;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-0.714;SB=-6.800e+01;SOR=0.818;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,19:36:99:601,0,485
2	96943473	rs3214063	T	C	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.284;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.997;HaplotypeScore=1.7337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.093;SB=-3.310e+02;SOR=0.938;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,25:62:99:680,0,1067
2	96944553	rs772175	G	A	1887.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-1.157;SB=-1.044e+03;SOR=0.697;VQSLOD=8.49;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,69:146:99:1916,0,2079
2	96950487	.	C	CT	236.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;RPA=12,13;RU=T;ReadPosRankSum=0.155;SB=-1.204e+01;SOR=0.299;STR;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:29:99:274,0,147
2	96952833	rs3171927	A	G	2191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=10.280;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-1.374;SB=-1.328e+03;SOR=0.675;VQSLOD=7.00;culprit=DP	GT:AD:DP:GQ:PL	0/1:87,84:173:99:2220,0,2367
2	96955480	rs3214058	T	C	897.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.196;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.122;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-2.725;SB=-2.350e+02;SOR=1.046;VQSLOD=7.62;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,31:62:99:926,0,895
2	96956315	rs772176	T	G	2212.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.03;SB=-8.550e+02;SOR=1.467;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2241,166,0
2	96962859	rs17479466	A	G	328.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.030;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.515;SB=-1.030e+02;SOR=0.829;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:357,0,358
2	96966661	rs3731930	G	C	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.893;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.295;SB=-2.750e+02;SOR=0.301;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,23:45:99:580,0,611
2	96991492	rs772174	A	G	3854.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.460e+03;SOR=1.792;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3883,280,0
2	96993757	rs2279105	C	T	1397.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.721;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.610;SB=-8.990e+02;SOR=0.693;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,58:108:99:1426,0,1350
2	96993884	rs1048675	A	G	1155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.690;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-0.291;SB=-6.530e+02;SOR=0.892;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,43:91:99:1184,0,1377
2	97020049	rs3731935	T	C	1029.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=5.718;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-1.790;SB=-4.220e+02;SOR=1.321;VQSLOD=7.32;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:43,41:84:99:1058,0,1119
2	97020170	rs3731936	A	C	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.105;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=-0.907;SB=0.00;SOR=0.693;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:350,0,339
2	97026576	rs62153915	C	T	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.884;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=-0.810;SB=0.00;SOR=0.693;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:386,0,417
2	97030247	rs2305935	T	C	438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.681;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-1.113;SB=-2.080e+02;SOR=0.948;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:467,0,434
2	97166204	rs3731938	A	G	2538.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-1.398e+03;SOR=0.770;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2567,193,0
2	97267260	rs6759099	G	C	591.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.368;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-1.738;SB=-2.560e+02;SOR=0.455;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,23:40:99:620,0,490
2	97267293	rs6749159	T	C	646.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.565;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-0.887;SB=-3.580e+02;SOR=0.223;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:675,0,607
2	97267644	rs62154845	G	A	484.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.446;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=5.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.960;SB=-8.000e+01;SOR=2.093;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,18:41:99:513,0,650
2	97281442	rs142774868	A	G	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=1.534;SB=0.00;SOR=0.446;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:170,0,243
2	97313450	rs60959055	C	G	1177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.695;HaplotypeScore=1.5983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-0.367;SB=-6.220e+02;SOR=0.954;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1206,0,1177
2	97326286	rs4907246	T	C	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=-0.247;SB=-7.297e+01;SOR=0.293;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,15:22:99:470,0,210
2	97351840	rs7599598	A	G	1458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.988;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.536;SB=-6.670e+02;SOR=0.588;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,49:106:99:1487,0,1502
2	97353725	rs868168	G	A	1350.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.136;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.737;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.541;SB=-3.870e+02;SOR=0.816;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:79,53:132:99:1379,0,2138
2	97360079	rs72809820	C	T	404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.443;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.64;ReadPosRankSum=-0.673;SB=-1.760e+02;SOR=0.303;VQSLOD=6.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,21:53:99:433,0,927
2	97366303	rs2280355	A	G	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-1.334;SB=0.00;SOR=0.770;VQSLOD=10.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:418,0,393
2	97400324	rs6727384	A	G	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.487;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.331;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-1.009;SB=-1.490e+02;SOR=1.101;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,21:43:99:634,0,614
2	97463095	rs1318597	T	C	950.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.090;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=0.367;SB=-4.630e+02;SOR=0.504;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,29:57:99:979,0,914
2	97529360	rs59271006	T	A	2142.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-1.108e+03;SOR=1.078;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2171,160,0
2	97544089	rs6750988	G	C	675.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-2.750e+02;SOR=1.609;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:704,51,0
2	97559759	rs11677797	G	A	796.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.079;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=1.340;SB=-4.140e+02;SOR=0.803;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,31:69:99:825,0,1059
2	97560913	rs4907206	C	T	305.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=5.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.95;ReadPosRankSum=0.882;SB=-1.960e+02;SOR=0.188;VQSLOD=7.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,14:44:99:334,0,928
2	97587049	rs34895357	T	C	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-0.046;SB=-2.070e+02;SOR=0.941;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:451,0,403
2	97589214	rs201544737	C	T	1580.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=3.617;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.91;ReadPosRankSum=-0.334;SB=-8.100e+02;SOR=1.006;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,59:106:99:1609,0,1220
2	97817393	.	A	T	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.00;MQ0=0;MQRankSum=-2.257;QD=9.48;ReadPosRankSum=-0.552;SB=0.00;SOR=0.446;VQSLOD=1.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:142,0,244
2	97817394	.	T	G	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.00;MQ0=0;MQRankSum=-2.257;QD=9.48;ReadPosRankSum=-0.713;SB=0.00;SOR=0.446;VQSLOD=1.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:142,0,244
2	97817420	rs113395174	G	A	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.43;MQ0=0;MQRankSum=-0.495;QD=11.62;ReadPosRankSum=-0.572;SB=-3.001e+01;SOR=0.593;VQSLOD=1.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,9:19:99:249,0,315
2	97817429	rs113099198	A	C	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.139;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.43;MQ0=0;MQRankSum=-0.495;QD=11.88;ReadPosRankSum=-0.327;SB=-3.500e+01;SOR=0.593;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,9:19:99:254,0,301
2	97817449	rs144612168	C	T	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=45.22;MQ0=0;MQRankSum=0.150;QD=10.32;ReadPosRankSum=1.522;SB=-6.500e+01;SOR=0.515;VQSLOD=1.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,9:24:99:276,0,392
2	97817469	rs62153866	T	A	270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.92;MQ0=0;MQRankSum=0.189;QD=9.03;ReadPosRankSum=0.775;SB=-1.570e+02;SOR=0.569;VQSLOD=1.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,13:30:99:299,0,426
2	97817661	rs199649518	C	T	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=-0.141;QD=5.63;ReadPosRankSum=-0.735;SB=-1.410e+02;SOR=0.763;VQSLOD=1.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,11:33:99:214,0,541
2	97833139	rs140541372	GGGTCCTATTT	G	635.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.17;MQ0=0;MQRankSum=-2.200;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=-0.674;SB=0.00;SOR=2.093;VQSLOD=2.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:99:673,0,233
2	97833567	rs76160111	A	G	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=43.64;MQ0=1;MQRankSum=0.600;QD=4.12;ReadPosRankSum=-0.313;SB=0.00;SOR=0.473;VQSLOD=1.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,7:15:90:90,0,229
2	97833569	rs78400826	C	T	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=44.60;MQ0=1;MQRankSum=0.184;QD=8.77;ReadPosRankSum=-0.275;SB=0.00;SOR=0.836;VQSLOD=1.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:151,0,154
2	97833583	rs72945197	C	T	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.53;MQ0=0;MQRankSum=-0.032;QD=11.31;ReadPosRankSum=0.547;SB=0.00;SOR=1.022;VQSLOD=2.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:164,0,138
2	97882648	rs28404646	G	A	435.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.41;SB=0.00;SOR=5.136;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:464,36,0
2	97884763	rs4328671	T	C	809.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=4;POSITIVE_TRAIN_SITE;QD=26.99;SB=-2.471e+02;SOR=2.303;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,29:30:66:838,66,0
2	98306619	rs148726343	C	A	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.585;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.174;SB=0.00;SOR=0.693;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:161,0,205
2	98341195	rs2289919	C	T	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.203;SB=-9.200e+01;SOR=0.512;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:317,0,387
2	98341728	rs2289918	C	G	872.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.804;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.703;SB=-1.830e+02;SOR=0.745;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,32:72:99:901,0,1193
2	98351986	rs13002912	T	C	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7988;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=0.778;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=0.088;SB=-1.765e+00;SOR=0.793;VQSLOD=3.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,10:30:99:281,0,650
2	98375256	rs144404290	T	A	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.642;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.449;SB=0.00;SOR=0.582;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:215,0,270
2	98376989	rs3214760	TA	T	220.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;RPA=5,4;RU=A;ReadPosRankSum=-0.586;SB=0.00;SOR=1.061;STR;VQSLOD=10.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:258,0,179
2	98524859	rs2309316	A	C	55.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.58;ReadPosRankSum=-2.241;SB=0.00;SOR=0.223;VQSLOD=9.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:84:84,0,249
2	98525107	rs1317178	T	C	1123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.264;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=5.722;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=1.346;SB=-4.320e+02;SOR=1.361;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,43:87:99:1152,0,1059
2	98709684	rs298917	T	C	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=7.719;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.35;ReadPosRankSum=-1.186;SB=-1.240e+02;SOR=0.943;VQSLOD=6.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,13:36:99:329,0,624
2	98735902	.	T	C	704.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;DP=55;Dels=0.00;ExcessHet=3.0103;FS=9.749;HaplotypeScore=2.7881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.81;ReadPosRankSum=-0.876;SB=-2.450e+02;SOR=1.539;VQSLOD=5.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:55:99:733,0,677
2	98795873	.	T	TG	4414.73	PASS	AC=2;AF=1.00;AN=2;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;RPA=2,3;RU=G;SB=-1.700e+03;SOR=1.300;STR;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:110:99:4452,319,0
2	98796028	rs4241221	T	A	655.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=0.00;SOR=5.784;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:684,51,0
2	98797744	rs4851890	C	T	1255.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.50;SB=-7.997e+01;SOR=4.235;VQSLOD=3.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:96:1284,96,0
2	98804314	rs1466156	G	A	1031.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-1.951e+02;SOR=3.056;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1060,81,0
2	98811075	rs7579916	A	G	1788.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-4.410e+02;SOR=2.628;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1817,132,0
2	98844575	rs7606220	A	G	471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.891;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.047;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.400;SB=-9.732e-01;SOR=1.999;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:500,0,624
2	98844674	rs7601049	C	G	1754.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.721;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=2.317;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.337;SB=-9.120e+02;SOR=0.956;VQSLOD=7.63;culprit=DP	GT:AD:DP:GQ:PL	0/1:57,68:125:99:1783,0,1363
2	98844918	rs80013524	G	A	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.191;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=-0.260;SB=0.00;SOR=0.693;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:402,0,409
2	98846405	rs12712252	A	T	410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.99;SB=0.00;SOR=4.977;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:439,33,0
2	98853173	rs11889349	G	A	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.536;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.83;ReadPosRankSum=0.982;SB=-1.400e+02;SOR=1.214;VQSLOD=7.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,19:60:99:438,0,1137
2	98862097	rs4851121	A	G	925.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.930;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.426;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-0.040;SB=-1.730e+02;SOR=0.353;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,29:64:99:954,0,1151
2	98866775	rs6747410	A	G	1376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=5.497;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=1.780;SB=-5.780e+02;SOR=1.200;VQSLOD=6.87;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,58:137:99:1405,0,2009
2	98887116	rs4851955	G	C	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=5.824;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=1.223;SB=-5.500e+01;SOR=1.863;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,15:37:99:453,0,557
2	98907089	.	G	GT	121.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;DP=26;ExcessHet=3.0103;FS=6.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.29;RPA=13,14;RU=T;ReadPosRankSum=0.373;SB=-5.900e+01;SOR=0.124;STR;VQSLOD=5.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,10:26:99:159,0,256
2	98928494	rs7587534	G	A	2200.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-9.030e+02;SOR=1.341;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2229,163,0
2	98928757	rs2271038	C	T	456.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.544;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.760;SB=-2.390e+02;SOR=0.512;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:485,0,489
2	98948224	rs13427344	C	A	1459.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.013;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=2.604;HaplotypeScore=1.5115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.726;SB=-7.570e+02;SOR=0.478;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,57:106:99:1488,0,1325
2	98994414	rs937725	T	C	1411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=-5.040e+02;SOR=1.501;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1440,108,0
2	98994631	.	A	AG	880.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.57;RPA=1,2;RU=G;ReadPosRankSum=0.329;SB=-2.390e+02;SOR=0.752;STR;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,23:47:99:918,0,851
2	99149946	rs2278211	G	A	1524.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.643;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=2.479;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.832;SB=-6.360e+02;SOR=0.398;VQSLOD=7.63;culprit=DP	GT:AD:DP:GQ:PL	0/1:69,62:131:99:1553,0,1929
2	99154229	rs2278208	C	T	929.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.267;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-0.631;SB=-1.720e+02;SOR=1.144;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,33:74:99:958,0,1206
2	99156296	rs6734569	G	T	576.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.620;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.929;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.312;SB=-2.070e+02;SOR=0.337;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,22:49:99:605,0,846
2	99160508	rs3217304	GCA	G	160.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.88;MQ0=0;MQRankSum=1.919;POSITIVE_TRAIN_SITE;QD=11.48;RPA=9,8;RU=CA;ReadPosRankSum=-1.075;SB=-1.765e+00;SOR=1.402;STR;VQSLOD=3.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:17:99:198,0,307
2	99163261	rs2278207	T	A	526.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.776;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=-0.126;SB=-1.310e+02;SOR=0.468;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,20:45:99:555,0,809
2	99168953	rs1181562	T	C	404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-3.876e+01;SOR=3.442;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:433,33,0
2	99172244	rs2278206	A	G	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.223;HaplotypeScore=3.8525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=1.610;SB=-2.140e+02;SOR=1.053;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:44:99:580,0,554
2	99181315	rs3214545	AT	A	1509.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.157;DB;DP=91;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=1.166;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=0.558;SB=-4.550e+02;SOR=0.801;VQSLOD=0.280;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,39:91:99:1547,0,2253
2	99193496	rs2230388	C	T	630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.685;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=1.502;SB=-2.410e+02;SOR=1.250;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,25:77:99:659,0,1410
2	99217106	.	G	A	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.54;ReadPosRankSum=0.772;SB=-1.090e+02;SOR=0.765;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:319,0,209
2	99219111	.	CA	C	41.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;DP=15;ExcessHet=3.0103;FS=9.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.98;RPA=17,16;RU=A;ReadPosRankSum=0.193;SB=-3.500e+01;SOR=0.018;STR;VQSLOD=4.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:15:79:79,0,182
2	99219206	rs7585939	T	A	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.2545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=0.112;SB=-1.570e+02;SOR=0.859;VQSLOD=8.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,11:29:99:262,0,452
2	99220707	rs4851144	T	C	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.48;ReadPosRankSum=1.173;SB=-3.200e+01;SOR=0.275;VQSLOD=9.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:94:94,0,246
2	99224998	rs17034241	C	G	1321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.932;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.980;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=0.862;SB=-4.520e+02;SOR=0.504;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,46:80:99:1350,0,881
2	99226021	rs3203856	C	T	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-0.700;SB=-1.765e+00;SOR=1.911;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:171,0,138
2	99226173	rs1062847	T	A	734.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.246;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.255;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.735;SB=-1.610e+02;SOR=1.112;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,24:52:99:763,0,709
2	99234586	.	A	AT	390.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;DP=53;ExcessHet=3.0103;FS=11.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.51;RPA=15,16;RU=T;ReadPosRankSum=-0.298;SB=-4.141e-01;SOR=3.215;STR;VQSLOD=5.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,21:53:99:428,0,149
2	99234589	.	T	TA	694.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;DP=54;ExcessHet=3.0103;FS=6.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-0.087;SB=-1.650e+02;SOR=0.154;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,26:54:99:732,0,391
2	99234601	rs113829787	T	A	786.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.69;ReadPosRankSum=0.538;SB=-1.960e+02;SOR=0.632;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,28:62:99:815,0,974
2	99274653	rs2271670	T	C	753.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-0.625;SB=-3.870e+02;SOR=0.673;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,32:68:99:782,0,810
2	99485421	rs4851165	C	T	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.62;ReadPosRankSum=-0.199;SB=-1.765e+00;SOR=0.693;VQSLOD=9.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:90:90,0,250
2	99651963	rs896884	T	C	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.640;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.840;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.397;SB=-9.732e-01;SOR=1.609;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,9:25:99:297,0,477
2	99721804	.	CT	C	122.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.15;RPA=15,14;RU=T;ReadPosRankSum=-1.216;SB=-3.800e+01;SOR=0.674;STR;VQSLOD=7.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,14:40:99:160,0,563
2	99725223	rs6542864	A	G	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.771;SB=-3.100e+01;SOR=0.760;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:483,0,478
2	99725479	.	A	AT	1050.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=1.134;POSITIVE_TRAIN_SITE;QD=16.95;RPA=1,2;RU=T;ReadPosRankSum=-0.417;SB=-1.930e+02;SOR=0.836;STR;VQSLOD=3.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,28:62:99:1088,0,1256
2	99725575	rs6733285	T	C	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.390;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=-0.422;SB=0.00;SOR=0.804;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:313,0,257
2	99726043	rs6733624	A	G	542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-7.597e+01;SOR=3.258;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:571,42,0
2	99743419	rs13008171	G	A	584.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.088;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.216;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=0.227;SB=-1.300e+02;SOR=1.422;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,22:42:99:613,0,595
2	99757696	rs76474684	T	C	66.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.45;ReadPosRankSum=0.184;SB=-1.905e+01;SOR=0.368;VQSLOD=8.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:95:95,0,243
2	99766927	.	C	CT	207.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.11;RPA=15,16;RU=T;ReadPosRankSum=-0.658;SB=-4.203e+01;SOR=0.495;STR;VQSLOD=6.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,13:37:99:245,0,339
2	99771533	rs2516834	C	T	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.952;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-0.635;SB=-1.090e+02;SOR=1.304;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,12:30:99:343,0,415
2	99771590	rs2632260	G	T	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.64;ReadPosRankSum=0.524;SB=-2.004e+01;SOR=1.402;VQSLOD=6.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:121,0,365
2	99778985	rs2632277	T	C	1405.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=0.146;SB=-8.130e+02;SOR=0.623;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,54:101:99:1434,0,1312
2	99779131	rs2516835	T	C	680.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-0.578;SB=-3.480e+02;SOR=0.662;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,23:57:99:709,0,874
2	99804642	rs10865030	T	C	258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.643;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.312;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=-0.452;SB=-1.000e+02;SOR=1.220;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:287,0,487
2	99811894	rs7605843	C	T	1732.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.042;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=1.005;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=0.128;SB=-2.660e+02;SOR=0.852;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,58:109:99:1761,0,1469
2	99812070	rs1044575	G	A	2275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.558;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.595;HaplotypeScore=4.4651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.354;SB=-9.320e+02;SOR=0.762;VQSLOD=6.63;culprit=DP	GT:AD:DP:GQ:PL	0/1:85,83:169:99:2304,0,2235
2	99923088	rs13003899	T	C	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7834;MLEAC=1;MLEAF=0.500;MQ=51.04;MQ0=0;MQRankSum=0.628;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=0.640;SB=-3.876e+01;SOR=1.022;VQSLOD=3.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,12:21:99:415,0,246
2	99923376	rs193125830	C	T	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.406;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.98;MQ0=0;MQRankSum=-3.251;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.182;SB=0.00;SOR=1.179;VQSLOD=2.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,11:18:99:292,0,225
2	99938301	rs13017871	C	T	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.67;MQ0=0;MQRankSum=-1.335;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.624;SB=0.00;SOR=0.551;VQSLOD=3.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:168,0,201
2	99954636	rs11326784	GT	G	363.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;DB;DP=51;ExcessHet=3.0103;FS=3.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.13;RPA=9,8;RU=T;ReadPosRankSum=0.956;SB=-3.100e+01;SOR=1.631;STR;VQSLOD=6.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,20:51:99:401,0,787
2	99954735	rs4850901	C	A	1129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.657;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=0.003;SB=-6.900e+02;SOR=0.622;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,47:110:99:1158,0,1741
2	99988453	rs11320097	CA	C	85.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;DB;DP=17;ExcessHet=3.0103;FS=2.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.36;RPA=4,3;RU=A;ReadPosRankSum=2.212;SB=-9.732e-01;SOR=1.445;STR;VQSLOD=5.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:17:99:123,0,346
2	99995804	rs1376443	T	C	1379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.694;HaplotypeScore=2.7077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.035;SB=-8.190e+02;SOR=0.500;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,59:98:99:1408,0,1034
2	99998561	rs2290256	C	T	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=0.145;SB=-9.901e+01;SOR=0.223;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:353,0,349
2	100006620	rs10187843	G	T	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.685;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.83;ReadPosRankSum=0.362;SB=-9.732e-01;SOR=1.179;VQSLOD=8.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:30:99:263,0,684
2	100017906	.	C	CA	106.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.67;RPA=14,15;RU=A;ReadPosRankSum=1.252;SB=-2.447e+01;SOR=1.329;STR;VQSLOD=7.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,10:18:84:144,0,84
2	100019496	rs2305354	A	G	602.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.126;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-0.754;SB=-2.390e+02;SOR=0.914;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,23:48:99:631,0,640
2	100022617	rs13394927	G	A	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-0.273;SB=-9.400e+01;SOR=0.593;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:245,0,455
2	100029106	rs2242037	T	C	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.252;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=-0.142;SB=0.00;SOR=0.188;VQSLOD=10.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:119,0,318
2	100050740	rs13409359	A	C	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.593;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.012;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-0.163;SB=-2.530e+02;SOR=0.223;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:454,0,665
2	100055033	rs10175852	C	A	543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.869;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.494;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=0.526;SB=-1.330e+02;SOR=1.139;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:572,0,523
2	100055158	rs3087399	T	C	1197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.106;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.888;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=0.306;SB=-5.180e+02;SOR=0.919;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,41:77:99:1226,0,984
2	100055506	rs3087386	A	G	1156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.654;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.143;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=-0.028;SB=-6.460e+02;SOR=0.895;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,41:64:99:1185,0,651
2	100058714	.	CA	C	135.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;DP=27;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.43;RPA=24,23;RU=A;ReadPosRankSum=0.301;SB=-3.711e+01;SOR=0.260;STR;VQSLOD=6.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,14:27:99:173,0,146
2	100081323	rs28369943	C	T	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.703;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.354;SB=-6.200e+01;SOR=0.929;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:403,0,499
2	100081561	rs66768903	A	AAAGTC	569.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DB;DP=16;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=-1.313;SB=-1.764e+00;SOR=2.030;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:16:99:607,0,470
2	100176775	rs13008878	A	G	1455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.652;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=0.140;SB=-7.410e+02;SOR=0.680;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,51:83:99:1484,0,762
2	100288931	rs4851222	G	A	1817.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-7.000e+02;SOR=1.781;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1846,135,0
2	100343557	rs4851223	C	T	2258.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-1.377e+03;SOR=0.774;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2287,169,0
2	100454072	rs33922639	C	CT	869.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.882;DB;DP=49;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=1.196;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=1.101;SB=-4.340e+02;SOR=0.528;VQSLOD=0.252;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,21:49:99:907,0,1116
2	100454085	rs1864273	T	A	584.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.514;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=-1.092;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-0.728;SB=-3.470e+02;SOR=0.988;VQSLOD=0.165;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,27:48:99:613,0,556
2	100623130	rs34506074	G	A	1788.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=3.082;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-2.220;SB=-9.040e+02;SOR=0.847;VQSLOD=6.99;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:68,64:132:99:1817,0,1990
2	100915629	rs4851286	T	C	2342.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-1.144e+03;SOR=1.226;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2371,172,0
2	100915772	rs4851287	A	G	2167.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-1.020e+03;SOR=1.385;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2196,160,0
2	100916051	rs2033749	T	C	716.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-7.697e+01;SOR=3.716;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:745,57,0
2	100916306	rs2033748	A	G	1294.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-2.131e+02;SOR=3.086;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:96:1323,96,0
2	100916315	rs11123823	A	G	1155.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-2.221e+02;SOR=2.899;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1184,87,0
2	100917109	rs13006224	C	T	2213.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-1.015e+03;SOR=1.394;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2242,160,0
2	100925803	rs10195793	A	G	493.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=0.00;SOR=5.421;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:522,39,0
2	100986964	rs1437971	A	C	1399.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.33;SB=-3.170e+02;SOR=2.780;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1428,102,0
2	101009600	rs1530030	G	A	368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=0.00;SOR=4.804;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:397,30,0
2	101010082	rs3748930	G	C	4868.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-2.727e+03;SOR=1.054;VQSLOD=5.05;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,160:160:99:4897,370,0
2	101011724	rs2241811	C	T	567.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-1.543e+02;SOR=2.303;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:596,45,0
2	101011877	rs2241810	T	C	1613.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-7.150e+02;SOR=1.251;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1642,120,0
2	101014247	rs4149517	C	A	598.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.67;SB=0.00;SOR=5.670;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:627,48,0
2	101014363	rs2241809	C	T	2767.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-7.960e+02;SOR=2.276;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2796,208,0
2	101022886	rs4149512	C	T	456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.8255;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.38;SB=-1.005e+02;SOR=2.833;VQSLOD=5.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:36:485,36,0
2	101031561	rs3828193	G	T	1062.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-2.660e+02;SOR=2.649;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1091,81,0
2	101096960	rs1519654	C	T	2487.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-1.099e+03;SOR=1.358;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2516,190,0
2	101099808	rs115342812	T	C	686.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.222;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=9.102;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=0.731;SB=-5.700e+01;SOR=2.457;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,22:42:99:715,0,527
2	101126124	rs1829479	T	A	2390.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-3.420e+02;SOR=3.611;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2419,181,0
2	101179341	rs2970988	A	G	1156.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-5.180e+02;SOR=1.209;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1185,87,0
2	101179342	rs2309848	G	A	1119.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-5.500e+02;SOR=1.209;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1148,84,0
2	101186088	rs1052117	C	T	3633.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-1.176e+03;SOR=1.855;VQSLOD=4.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3662,277,0
2	101188373	rs71807783	C	CCTGTGTATGAGTGA	3159.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.24;SB=-9.151e+02;SOR=1.828;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:27:63:3197,63,0
2	101277136	.	C	T	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.183;SB=-8.500e+01;SOR=0.527;VQSLOD=6.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,8:34:99:174,0,726
2	101520972	rs33966831	A	AT	784.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.21;SB=-5.276e+01;SOR=4.294;VQSLOD=5.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:822,51,0
2	101521173	.	AT	A	383.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.21;RPA=17,16;RU=T;ReadPosRankSum=-1.639;SB=-1.880e+02;SOR=0.963;STR;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,23:31:32:421,0,32
2	101541798	rs356651	C	T	1270.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;SB=-7.300e+02;SOR=1.203;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:93:1299,93,0
2	101564628	rs10207725	A	C,G	1155.77	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.19;SB=-3.780e+02;SOR=2.247;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,19,22:41:99:1184,591,543,594,0,548
2	101566070	rs3739005	C	T	1256.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.93;SB=-5.460e+02;SOR=1.714;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:93:1285,93,0
2	101581246	rs7581886	C	T	1316.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-4.890e+02;SOR=1.508;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1345,99,0
2	101581294	rs34961878	C	CTT	612.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;DB;DP=58;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;RPA=13,15;RU=T;ReadPosRankSum=1.305;SB=-2.150e+02;SOR=1.165;STR;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:58:99:650,0,709
2	101581495	rs60563199	CT	C	955.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.222;DB;DP=52;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=0.707;SB=-2.580e+02;SOR=0.941;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,26:52:99:993,0,1094
2	101581508	rs17025086	A	G	646.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.755;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-0.523;SB=-2.110e+02;SOR=0.869;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,25:47:99:675,0,572
2	101581934	rs10711978	CA	C	599.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.99;RPA=10,9;RU=A;SB=0.00;SOR=6.518;STR;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:26:75:637,75,0
2	101581946	rs3768986	C	T	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.996;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.343;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=0.127;SB=-3.677e+01;SOR=0.095;VQSLOD=0.118;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,12:30:99:336,0,645
2	101581976	rs4851392	A	G	1832.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SB=-1.941e+02;SOR=4.133;VQSLOD=6.39;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1861,141,0
2	101582245	rs3841571	AGCCCAGGCATGGGG	A	5174.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;DB;DP=105;ExcessHet=3.0103;FS=5.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=2.802;SB=-8.010e+02;SOR=1.447;VQSLOD=6.26;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:59,32:105:99:5212,0,9024
2	101584895	rs2289950	C	T	833.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.257;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.368;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-0.064;SB=-1.350e+02;SOR=1.140;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,28:57:99:862,0,752
2	101584951	rs35503589	A	G	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-1.024;SB=0.00;SOR=0.512;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:269,0,340
2	101587642	rs75107839	A	T	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.151;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-2.179;SB=-1.200e+02;SOR=1.341;VQSLOD=7.23;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,21:41:99:611,0,506
2	101591304	rs2305160	A	G	3290.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.89;SB=-2.036e+03;SOR=1.040;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3319,247,0
2	101591443	rs2305159	A	C	679.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.858;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=5.688;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-0.090;SB=-5.300e+01;SOR=1.942;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,23:53:99:708,0,849
2	101606810	rs1053091	G	A	1641.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=2.145;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=2.204;SB=-8.690e+02;SOR=0.925;VQSLOD=6.53;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:74,65:139:99:1670,0,1821
2	101869588	rs2272320	G	T	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=-0.308;SB=-1.070e+02;SOR=0.446;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:362,0,303
2	101874442	rs6757365	C	T	1543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.729;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=3.431;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=1.524;SB=-6.950e+02;SOR=1.107;VQSLOD=7.86;culprit=DP	GT:AD:DP:GQ:PL	0/1:58,61:119:99:1572,0,1451
2	101881549	rs3768995	A	T	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.960;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=-0.635;SB=-1.401e+02;SOR=0.357;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,21:32:99:615,0,323
2	101883046	rs1660694	A	G	230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=0.568;SB=-4.276e+01;SOR=0.495;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:259,0,115
2	101889306	rs750783	A	G	438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.083;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-0.506;SB=-1.370e+02;SOR=0.616;VQSLOD=9.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:467,0,435
2	101889938	.	CT	C	85.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DP=26;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.51;RPA=18,17;RU=T;ReadPosRankSum=-0.655;SB=-3.697e+01;SOR=0.086;STR;VQSLOD=4.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,10:26:99:123,0,133
2	101898412	rs13151	G	C	1732.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.41;SB=-1.189e+03;SOR=0.793;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1761,123,0
2	101911385	rs3828194	A	G	488.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.403;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.190;SB=-2.110e+02;SOR=0.395;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:517,0,594
2	101967346	.	C	T	1156.77	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.05;SB=-2.710e+02;SOR=2.649;VQSLOD=4.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1185,87,0
2	101971618	rs6753727	T	C	742.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-4.076e+01;SOR=4.615;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:771,57,0
2	102018908	rs2175968	A	G	2228.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-1.228e+03;SOR=0.722;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:74:99:2257,172,0
2	102031176	rs4851434	A	G	1116.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-7.697e+01;SOR=4.548;VQSLOD=3.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:84:1145,84,0
2	102031489	rs4851435	C	G	1758.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-5.660e+02;SOR=2.221;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1787,129,0
2	102035192	rs6709913	C	T	2179.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-1.012e+03;SOR=1.162;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2208,163,0
2	102038849	rs4851436	T	A	3518.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-2.198e+03;SOR=0.693;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3547,259,0
2	102045328	rs6543047	C	T	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-0.095;SB=-3.401e+01;SOR=0.346;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:262,0,454
2	102066878	rs4851448	A	T	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=-0.277;SB=0.00;SOR=0.330;VQSLOD=9.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:121,0,234
2	102066981	rs74263247	C	T	571.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.131;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.020;HaplotypeScore=3.2819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.680;SB=-2.720e+02;SOR=0.215;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,22:42:99:600,0,565
2	102067083	rs7585228	T	C	682.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.288;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.371;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.123;SB=-3.770e+02;SOR=0.971;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,26:51:99:711,0,644
2	102083183	rs4851455	T	C	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.128;SB=-1.501e+02;SOR=0.090;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:352,0,393
2	102632582	rs3819369	T	A	457.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=2.185;SB=-1.765e+00;SOR=2.712;VQSLOD=5.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,14:22:99:486,0,220
2	102773999	rs2287048	C	T	335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.394;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.380;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=-1.223;SB=-1.580e+02;SOR=0.451;VQSLOD=7.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,15:37:99:364,0,675
2	102774054	rs2287047	G	A	462.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.367;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.856;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.26;ReadPosRankSum=1.160;SB=-1.570e+02;SOR=1.199;VQSLOD=7.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,21:56:99:491,0,965
2	102782433	rs997049	T	A	997.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.279;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=7.012;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-0.552;SB=-2.150e+02;SOR=1.682;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,35:74:99:1026,0,1046
2	102785158	rs3213735	G	T	726.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.275;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.9667;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=1.890;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=1.141;SB=-2.350e+02;SOR=0.777;VQSLOD=1.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,30:75:99:755,0,1172
2	102788125	rs3917304	G	T	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.313;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=0.684;SB=0.00;SOR=0.527;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:236,0,375
2	102788409	rs2041747	G	A	2800.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6616;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-9.640e+02;SOR=1.809;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:88:99:2829,211,0
2	102792760	rs3917318	A	G	383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.166;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-1.391;SB=0.00;SOR=1.127;VQSLOD=10.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:412,0,254
2	102804538	rs3835036	A	AACC	523.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=1.515;POSITIVE_TRAIN_SITE;QD=23.81;RPA=1,2;RU=ACC;ReadPosRankSum=-0.559;SB=-5.600e+01;SOR=0.693;STR;VQSLOD=3.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,11:30:99:561,0,594
2	102817954	rs2302623	A	T	553.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.567;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=7.533;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.012;SB=-1.391e+02;SOR=0.093;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:582,0,726
2	102828378	.	A	ATT	168.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.87;RPA=10,12;RU=T;ReadPosRankSum=-0.204;SB=-4.176e+01;SOR=0.307;STR;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:206,0,114
2	102851496	rs35960329	C	T	1084.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=1.612;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-0.976;SB=-5.970e+02;SOR=0.892;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,42:102:99:1113,0,1679
2	102954653	rs13431828	C	T	760.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.512;SB=-4.010e+02;SOR=0.815;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,34:56:99:789,0,584
2	102955468	rs1041973	C	A	1356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.402;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=7.475;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-0.517;SB=-8.010e+02;SOR=0.301;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,55:113:99:1385,0,1699
2	102957348	rs10173081	C	T	751.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.264;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.230;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-1.251;SB=-1.600e+02;SOR=0.276;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,27:64:99:780,0,1094
2	102967928	rs4988955	A	G	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.180;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-1.470;SB=-6.600e+01;SOR=0.463;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,20:55:99:593,0,1127
2	102968007	rs4988956	G	A	1730.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.988;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=2.431;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.585;SB=-4.900e+02;SOR=1.047;VQSLOD=7.72;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,67:143:99:1759,0,2396
2	102968075	rs4988957	T	C	2474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=10.215;DB;DP=214;Dels=0.00;ExcessHet=3.0103;FS=1.709;HaplotypeScore=16.8035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-0.447;SB=-1.224e+03;SOR=0.837;VQSLOD=5.88;culprit=DP	GT:AD:DP:GQ:PL	0/1:117,96:213:99:2503,0,3341
2	102968211	rs10192036	C	A	1906.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=3.712;HaplotypeScore=2.4938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.094;SB=-6.210e+02;SOR=0.387;VQSLOD=7.80;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,66:140:99:1935,0,2316
2	102968212	rs10204137	A	G	1805.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.339;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=3.655;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.346;SB=-6.420e+02;SOR=0.423;VQSLOD=7.80;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,67:139:99:1834,0,2261
2	102968285	rs4988958	T	C	835.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.083;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.046;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-0.535;SB=-2.550e+02;SOR=0.914;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,30:62:99:864,0,977
2	102968356	rs10192157	C	T	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.683;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.93;ReadPosRankSum=0.829;SB=-8.600e+01;SOR=1.244;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,13:33:99:191,0,503
2	102968362	rs10206753	T	C	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.39;ReadPosRankSum=1.228;SB=-5.800e+01;SOR=1.329;VQSLOD=7.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:280,0,475
2	102984624	rs1362348	C	G	230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=-0.786;SB=0.00;SOR=1.022;VQSLOD=10.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:90:259,0,90
2	102990648	rs17027029	G	C	368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.039;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-1.013;SB=-2.080e+02;SOR=0.169;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:397,0,313
2	102998279	rs3213732	A	G	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.521;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=-0.159;SB=0.00;SOR=1.402;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:430,0,181
2	103006448	rs6749014	C	T	843.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=6.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=0.731;SB=-2.420e+02;SOR=1.522;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,33:79:99:872,0,1242
2	103010912	rs1420096	C	T	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.016;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-1.182;SB=-9.200e+01;SOR=0.551;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,20:43:99:552,0,737
2	103028041	.	G	T	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.525;SB=-5.700e+01;SOR=0.760;VQSLOD=6.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:99:135,0,178
2	103028066	rs7586983	C	T	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-1.113;SB=-6.500e+01;SOR=0.850;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:138,0,136
2	103039584	rs3817465	A	T	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-1.464;SB=-3.100e+01;SOR=0.846;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:283,0,412
2	103039873	rs2272127	C	G	405.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.692;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.915;SB=-9.500e+01;SOR=0.384;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,15:36:99:434,0,649
2	103039929	rs2272128	G	A	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=0.963;SB=0.00;SOR=0.818;VQSLOD=10.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:279,0,231
2	103040249	rs2272129	C	G	350.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.9944;MLEAC=1;MLEAF=0.500;MQ=65.41;MQ0=0;MQRankSum=4.726;QD=15.25;ReadPosRankSum=1.942;SB=-3.377e+01;SOR=0.223;VQSLOD=0.766;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,12:23:99:379,0,368
2	103040249	.	C	CT	320.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.41;MQ0=0;MQRankSum=4.726;QD=13.94;RPA=3,4;RU=T;ReadPosRankSum=1.879;SB=-3.876e+01;SOR=0.223;STR;VQSLOD=0.766;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,12:23:99:358,0,306
2	103057892	rs11465702	A	G	1215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.700;SB=-4.120e+02;SOR=0.739;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,45:85:99:1244,0,1095
2	103059613	rs1558651	A	G	2788.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.492e+03;SOR=1.030;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2817,202,0
2	103063369	rs6708413	G	A	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.299;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.871;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.490;SB=-8.600e+01;SOR=1.402;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:240,0,222
2	103063520	rs11465723	G	A	674.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.303;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-1.060;SB=-1.690e+02;SOR=0.880;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:703,0,562
2	103095404	rs11692304	G	A	1700.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-8.210e+02;SOR=1.159;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1729,129,0
2	103120232	rs2075188	G	A	1536.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-6.010e+02;SOR=1.747;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1565,117,0
2	103120311	rs2075187	G	A	603.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-4.076e+01;SOR=4.294;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:632,48,0
2	103121536	rs7605606	G	A	471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=0.00;SOR=5.421;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:500,39,0
2	103121654	rs72825956	G	A	603.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.655;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-1.696;SB=-2.120e+02;SOR=0.693;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,25:59:99:632,0,912
2	103125182	rs6724322	C	T	321.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=0.00;SOR=4.977;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:350,27,0
2	103125457	rs6739301	A	G	1174.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-5.450e+02;SOR=1.002;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1203,90,0
2	103125466	rs6742381	T	C	1154.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-6.140e+02;SOR=1.179;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1183,90,0
2	103128866	rs4851609	T	C	1370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-4.850e+02;SOR=1.845;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1399,108,0
2	103130594	rs200327384	A	G	725.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.131;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.458;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.12;ReadPosRankSum=-0.538;SB=-1.380e+02;SOR=1.209;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,26:48:99:754,0,641
2	103136241	.	A	G	1149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.974;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.846;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-0.450;SB=-4.600e+02;SOR=0.892;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,42:87:99:1178,0,1264
2	103136309	rs1403550	T	C	3082.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.08;SB=-1.859e+03;SOR=0.941;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3111,232,0
2	103136446	rs1403551	T	G	1201.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-2.780e+02;SOR=2.712;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1230,93,0
2	103141447	rs2015478	A	G	1070.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=-6.210e+02;SOR=0.859;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:81:1099,81,0
2	103149100	rs1014286	G	A	1039.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.66;SB=-5.090e+02;SOR=0.976;VQSLOD=5.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1068,78,0
2	103149162	rs2008159	A	G	882.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-4.940e+02;SOR=0.922;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:911,66,0
2	103149182	rs2008157	A	G	889.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-3.890e+02;SOR=1.101;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:918,69,0
2	103281960	rs6543176	A	G	666.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=0.00;SOR=5.784;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:695,51,0
2	103300506	rs6757258	A	G	1966.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;SB=-1.002e+03;SOR=1.284;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1995,150,0
2	103334969	rs1052431	G	A	568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=9.166;HaplotypeScore=2.4476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.504;SB=-1.090e+02;SOR=2.093;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,20:42:99:597,0,616
2	103343275	rs34958116	G	GA	57.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;MQ0=0;MQRankSum=1.521;POSITIVE_TRAIN_SITE;QD=4.44;RPA=19,20;RU=A;ReadPosRankSum=-0.141;SB=-4.100e+01;SOR=0.582;STR;VQSLOD=3.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:95:95,0,95
2	103375056	rs2732838	T	G	859.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.625;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=6.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-0.458;SB=-4.060e+02;SOR=0.968;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,32:76:99:888,0,1260
2	103378581	rs5833037	CT	C	220.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.60;RPA=16,15;RU=T;ReadPosRankSum=-0.158;SB=0.00;SOR=1.179;STR;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:258,0,180
2	103378857	rs2540298	C	G	1065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.830;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-0.633;SB=-3.400e+02;SOR=0.739;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,36:77:99:1094,0,1126
2	103380998	rs2540296	C	G	419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.721;SB=-1.000e+02;SOR=0.927;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:448,0,654
2	103414593	rs140870577	CACTA	C	1236.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.35;RPA=2,1;RU=ACTA;ReadPosRankSum=-0.665;SB=-2.620e+02;SOR=0.665;STR;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,20:30:99:1274,0,416
2	103431404	rs887987	T	C	1250.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-7.170e+02;SOR=1.055;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:96:1279,96,0
2	105654446	rs7587563	A	G	58.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.34;ReadPosRankSum=-0.008;SB=0.00;SOR=0.180;VQSLOD=9.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:87:87,0,274
2	105654716	rs3739160	C	T	562.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.767;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.215;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-0.825;SB=-3.990e+02;SOR=0.434;VQSLOD=7.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,26:57:99:591,0,871
2	105654830	rs3739159	G	T	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.246;SB=-3.000e+01;SOR=1.179;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:339,0,373
2	105709023	rs6543282	T	C	1467.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-3.240e+02;SOR=2.985;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1496,117,0
2	105885961	rs2241797	T	C	414.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.441;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=0.349;SB=-2.410e+02;SOR=0.446;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,16:28:99:443,0,336
2	105886219	rs2241798	C	A	238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.673;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.669;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-1.489;SB=-1.340e+02;SOR=0.116;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,10:23:99:267,0,389
2	105889349	rs11676273	G	A	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.329;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.016;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=1.019;SB=-3.000e+02;SOR=0.223;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:457,0,525
2	105889804	rs2304543	C	A	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=-1.504;SB=-4.076e+01;SOR=1.329;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,10:12:48:327,0,48
2	105915128	rs12476720	G	A	1572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.229;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=1.087;HaplotypeScore=2.8734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=-0.788;SB=-3.070e+02;SOR=0.976;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,53:87:99:1601,0,997
2	105924017	rs67600221	C	T	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.191;SB=-2.020e+02;SOR=0.551;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:322,0,347
2	105924510	rs2241801	A	G	1158.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=4.075;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-0.309;SB=-6.350e+02;SOR=0.477;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,43:84:99:1187,0,1182
2	105953938	rs33924571	G	GC	798.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-1.455e+02;SOR=2.712;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:836,51,0
2	105961703	rs2679842	G	A	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.388;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.42;ReadPosRankSum=-0.506;SB=-3.001e+01;SOR=0.148;VQSLOD=6.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,6:21:99:142,0,524
2	105977903	rs2244182	G	C	1189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=-0.447;SB=-6.050e+02;SOR=0.685;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,41:63:99:1218,0,568
2	105979599	rs373202788	C	CAGAT	1062.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.15;RPA=1,2;RU=AGAT;ReadPosRankSum=0.325;SB=-6.600e+01;SOR=0.756;STR;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:34:99:1100,0,1001
2	105994827	rs28545614	C	T	418.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.427;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-0.615;SB=-2.130e+02;SOR=0.283;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:447,0,353
2	106013216	rs11891016	T	C	1068.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-1.901e+02;SOR=3.126;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1097,90,0
2	106013248	rs11884297	C	T	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.321;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=1.069;SB=-9.732e-01;SOR=1.981;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:275,0,435
2	106471327	rs7580718	C	A	1378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.47;SB=-2.271e+02;SOR=3.258;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1407,105,0
2	106471393	rs6543345	T	C	2025.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8940;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-9.240e+02;SOR=1.394;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2054,147,0
2	106471825	.	C	CA	1196.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.346;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.52;MQ0=0;MQRankSum=0.636;POSITIVE_TRAIN_SITE;QD=21.76;RPA=12,13;RU=A;ReadPosRankSum=-0.628;SB=-1.153e+02;SOR=1.054;STR;VQSLOD=3.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,50:62:66:1228,66,0
2	106682226	rs4271786	T	C	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=0.562;SB=-1.330e+02;SOR=0.223;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,8:15:99:178,0,213
2	106682235	rs4266035	C	G	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=4.467;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=0.309;SB=-1.210e+02;SOR=0.525;VQSLOD=7.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,9:16:99:186,0,209
2	106682365	rs4477942	T	G	67.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.616;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.65;ReadPosRankSum=-0.654;SB=-5.700e+01;SOR=0.169;VQSLOD=6.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:96:96,0,241
2	106690137	rs4851111	G	A	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-0.864;SB=0.00;SOR=1.022;VQSLOD=10.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:227,0,169
2	106715342	rs3820891	G	A,T	359.77	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-4.419e+01;SOR=3.611;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,4,8:12:99:388,252,240,136,0,115
2	106717274	rs3739136	A	G	473.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.092;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=-1.968;SB=-2.090e+02;SOR=0.804;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:502,0,325
2	106717656	rs10177888	G	A	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.540;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.741;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.44;ReadPosRankSum=-0.566;SB=-2.901e+01;SOR=0.184;VQSLOD=6.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,9:29:99:244,0,699
2	106742139	rs4851925	C	T	3135.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-1.609e+03;SOR=1.146;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3164,235,0
2	106742177	rs3739137	T	A	1116.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.133;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.821;HaplotypeScore=3.8932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=1.145;SB=-5.070e+02;SOR=0.595;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,42:90:99:1145,0,1365
2	106780055	rs33940045	C	CTG	1193.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-3.011e+02;SOR=2.200;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:1231,63,0
2	106782398	rs4851115	C	G	1058.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=-7.297e+01;SOR=4.407;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1087,81,0
2	106992952	rs4641931	A	G	1326.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=-7.240e+02;SOR=0.976;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:96:1355,96,0
2	106992963	rs67031119	A	AG	2125.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-1.012e+03;SOR=0.829;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:2163,135,0
2	107007467	rs7575679	G	A	1473.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=4;QD=27.81;SB=-9.010e+02;SOR=0.733;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1502,111,0
2	107032279	rs6543411	T	C	2842.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5238;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=1;POSITIVE_TRAIN_SITE;QD=29.31;SB=-1.618e+03;SOR=0.969;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2871,205,0
2	107073469	rs76857936	T	A	755.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.405;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.38;MQ0=3;MQRankSum=2.517;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=-0.458;SB=-5.180e+02;SOR=0.132;VQSLOD=0.275;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,33:39:45:784,0,45
2	107073501	rs72627454	C	T	729.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=6.405;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.41;MQ0=2;MQRankSum=2.848;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=-1.224;SB=-5.080e+02;SOR=0.298;VQSLOD=0.224;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,30:35:45:758,0,45
2	107084739	rs6718521	A	G	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.683;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=1.946;SB=-1.880e+02;SOR=0.473;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,11:14:52:345,0,52
2	107084845	rs11893526	G	C	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.700;SB=-3.100e+01;SOR=1.508;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:135,0,108
2	107107511	rs11124115	C	T	4904.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-3.034e+03;SOR=0.744;VQSLOD=3.64;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,160:160:99:4933,355,0
2	107107567	rs2228021	G	C	4307.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6732;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=29.11;SB=-2.459e+03;SOR=1.032;VQSLOD=3.45;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4336,325,0
2	107107694	rs6543414	A	G	1482.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-2.750e+02;SOR=3.160;VQSLOD=7.55;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1511,111,0
2	107107765	rs6543415	C	A	549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-4.076e+01;SOR=4.174;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:578,45,0
2	107118896	rs4340514	T	C	404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;SB=-1.741e+02;SOR=1.329;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:433,33,0
2	107121040	.	T	TA	496.73	PASS	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.14;RPA=9,10;RU=A;SB=-2.480e+02;SOR=0.793;STR;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:56:534,56,0
2	107314806	rs142445925	A	G	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.192;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.61;MQ0=0;MQRankSum=-2.237;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=0.953;SB=-1.610e+02;SOR=0.892;VQSLOD=3.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,13:20:99:389,0,195
2	107423395	rs1470590	T	G	2413.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-1.284e+03;SOR=0.898;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2442,178,0
2	107429801	rs6739022	C	T	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.505;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.917;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=0.972;SB=-9.732e-01;SOR=1.880;VQSLOD=6.63;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,10:25:99:276,0,471
2	107446396	rs877693	T	C	45.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.16;ReadPosRankSum=0.000;SB=0.00;SOR=0.180;VQSLOD=9.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:74:74,0,286
2	107446430	rs935565	T	C	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=7.890;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=-1.619;SB=-7.697e+01;SOR=0.041;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,12:29:99:328,0,592
2	107450390	rs7608410	C	T	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.102;SB=-1.765e+00;SOR=1.802;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:265,0,233
2	107450589	rs3796111	C	T	1422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.393;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.692;HaplotypeScore=4.6373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.832;SB=-8.640e+02;SOR=0.826;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,60:119:99:1451,0,1341
2	107459974	rs3796110	C	T	1416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-7.520e+02;SOR=0.976;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1445,105,0
2	107460348	rs118018738	T	A	752.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.585;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-1.401;SB=-4.360e+02;SOR=0.477;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,28:58:99:781,0,850
2	108443511	rs7576738	C	G	541.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-2.590e+02;SOR=1.179;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:570,42,0
2	108443567	rs62159106	G	A	478.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-2.760e+02;SOR=1.061;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:36:507,36,0
2	108443591	rs7603113	A	C	405.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=-2.021e+02;SOR=1.329;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:434,33,0
2	108443598	rs7577032	G	C	423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-1.931e+02;SOR=1.329;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:452,33,0
2	108475958	rs142985549	A	G	2886.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=6.858;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.91;MQ0=1;MQRankSum=8.061;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=0.487;SB=-1.315e+03;SOR=1.514;VQSLOD=0.057;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,110:136:99:2915,0,182
2	108496435	rs832352	T	A	1299.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.866;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=1.400;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=0.667;SB=-2.331e+02;SOR=1.880;VQSLOD=2.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,38:39:99:1328,102,0
2	108520454	rs199920243	C	T	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.07;MQ0=0;MQRankSum=-0.285;QD=5.52;ReadPosRankSum=-1.834;SB=-9.732e-01;SOR=1.371;VQSLOD=1.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:89:89,0,182
2	108622812	rs35097745	TTA	T	719.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;RPA=3,2;RU=TA;SB=-1.465e+02;SOR=2.584;STR;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:18:48:757,48,0
2	108863650	rs9646947	A	C	952.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.070;HaplotypeScore=3.5416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.425;SB=-3.020e+02;SOR=0.522;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,38:73:99:981,0,1027
2	108863767	rs9308806	A	C	3527.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-2.044e+03;SOR=0.827;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3556,256,0
2	108863898	rs10209928	C	T	759.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.751;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=-1.293;SB=-9.600e+01;SOR=0.708;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,25:43:99:788,0,534
2	108868736	rs13030422	G	A	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-1.872;SB=0.00;SOR=0.914;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:323,0,227
2	108875093	rs2198463	T	A	827.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.283;SB=-1.990e+02;SOR=0.527;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,30:65:99:856,0,1014
2	108875198	rs2219078	G	A	1466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.748;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.686;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.278;SB=-7.960e+02;SOR=0.787;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,56:118:99:1495,0,1645
2	108875244	rs6722745	T	C	1466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.164;SB=-8.960e+02;SOR=0.455;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,57:114:99:1495,0,1628
2	108875464	.	AAAACTTGGTCAGGTGATGTTAT	A	9328.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.35;ReadPosRankSum=3.246;SB=-3.991e+03;SOR=0.702;VQSLOD=5.71;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:63,40:114:99:9366,0,11478
2	108877062	rs4141932	T	A	952.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-3.200e+02;SOR=2.165;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:75:981,75,0
2	108877316	rs4141933	T	C	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.997;SB=-1.765e+00;SOR=1.179;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:170,0,240
2	108915136	rs7590599	T	C	1405.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.12;SB=-8.000e+02;SOR=0.952;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1434,102,0
2	108915263	rs4149422	C	T	822.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SB=-1.951e+02;SOR=2.226;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:63:851,63,0
2	108938552	rs1879495	T	G	412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=0.00;SOR=4.977;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:441,33,0
2	108946156	rs6753034	T	C	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.176;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.199;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=1.778;SB=-2.901e+01;SOR=1.426;VQSLOD=7.08;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:237,0,317
2	108946178	rs6709159	A	G	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=0.236;SB=-4.176e+01;SOR=0.293;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:213,0,161
2	108968944	.	G	GA	322.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;DP=39;ExcessHet=3.0103;FS=6.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;RPA=10,11;RU=A;ReadPosRankSum=-0.679;SB=-6.097e+01;SOR=0.083;STR;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:39:99:360,0,323
2	108994808	rs1402467	C	G	1995.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.82;SB=-5.270e+02;SOR=2.428;VQSLOD=3.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2024,147,0
2	108998797	rs374478497	A	AG	1339.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.869;DB;DP=51;ExcessHet=3.0103;FS=6.662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=-0.714;SB=-2.470e+02;SOR=2.649;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1377,145,0
2	108998798	rs4149434	T	A	1595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=48.9827;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-4.300e+02;SOR=2.494;VQSLOD=2.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1624,120,0
2	108999786	rs4149436	T	C	1380.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-4.890e+02;SOR=1.900;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1409,102,0
2	109065858	rs2460947	T	C	837.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-3.690e+02;SOR=1.136;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:866,66,0
2	109066234	rs377365761	AT	A	324.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;RPA=13,12;RU=T;SB=-2.777e+01;SOR=4.174;STR;VQSLOD=3.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:18:47:362,47,0
2	109069008	rs2683797	T	C	1619.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-9.800e+02;SOR=0.931;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1648,117,0
2	109089404	rs2243888	C	G	584.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-1.653e+02;SOR=2.419;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:613,45,0
2	109099477	rs2577613	A	G	351.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.06;SB=-2.441e+02;SOR=0.836;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:380,27,0
2	109109325	rs143344405	TAAGA	T	513.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;RPA=2,1;RU=AAGA;SB=0.00;SOR=4.615;STR;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:13:27:551,27,0
2	109123996	rs2577596	T	G	892.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-3.580e+02;SOR=1.765;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:66:921,66,0
2	109292280	rs7584953	T	C	3856.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-1.342e+03;SOR=1.773;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3885,283,0
2	109294588	rs145969561	A	T	2066.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-5.070e+02;SOR=2.730;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2095,157,0
2	109347947	rs826526	T	G	434.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.15;SB=-2.021e+02;SOR=1.863;VQSLOD=3.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:33:463,33,0
2	109351914	rs826579	C	G	1660.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-1.583e+02;SOR=4.407;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1689,129,0
2	109352503	rs826578	A	G	674.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-4.276e+01;SOR=4.712;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:703,54,0
2	109352542	rs826577	G	A	992.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.34;MQ0=2;POSITIVE_TRAIN_SITE;QD=29.20;SB=-1.603e+02;SOR=3.545;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1021,81,0
2	109352744	rs826576	C	T	1302.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-2.700e+02;SOR=2.948;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1331,102,0
2	109369720	rs826521	G	T	725.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-2.610e+02;SOR=1.426;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:754,57,0
2	109371488	rs74714907	A	G	840.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.98;MQ0=0;MQRankSum=-1.067;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-0.075;SB=-4.820e+02;SOR=0.563;VQSLOD=2.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,34:75:99:869,0,1042
2	109374952	rs826549	A	G	1253.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=1;POSITIVE_TRAIN_SITE;QD=25.08;SB=-6.740e+02;SOR=0.693;VQSLOD=4.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1282,102,0
2	109388846	rs700876	G	A	750.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=-4.350e+02;SOR=0.776;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:779,57,0
2	109389463	rs826580	G	A	2517.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-1.530e+03;SOR=0.741;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2546,184,0
2	109393522	rs58272304	TG	T	1150.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.26;RPA=4,3;RU=G;SB=-1.653e+02;SOR=3.407;STR;VQSLOD=5.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1188,90,0
2	109404474	.	C	CT	955.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=0.464;QD=21.72;RPA=11,12;RU=T;ReadPosRankSum=-0.017;SB=-3.885e+02;SOR=0.593;STR;VQSLOD=2.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,38:45:25:993,0,25
2	109408208	rs6740879	G	A	941.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-3.550e+02;SOR=1.609;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:970,72,0
2	109490104	rs6737810	A	G	625.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.33;SB=0.00;SOR=5.670;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:654,48,0
2	109513321	rs7607563	C	A	1136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.599;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=2.811;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-0.233;SB=-5.060e+02;SOR=0.455;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,44:101:99:1165,0,1638
2	109513654	rs12623957	G	A	1743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.373;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.605;HaplotypeScore=4.7429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-1.883;SB=-9.770e+02;SOR=0.584;VQSLOD=6.72;culprit=DP	GT:AD:DP:GQ:PL	0/1:85,70:155:99:1772,0,2218
2	109522747	rs3833574	CT	C	375.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DB;DP=35;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;RPA=8,7;RU=T;ReadPosRankSum=1.882;SB=-1.170e+02;SOR=0.416;STR;VQSLOD=7.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,18:35:99:413,0,375
2	109524105	rs11306434	CA	C	221.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=1.391;POSITIVE_TRAIN_SITE;QD=9.24;RPA=12,11;RU=A;ReadPosRankSum=-0.087;SB=-4.200e+01;SOR=0.892;STR;VQSLOD=3.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,13:24:99:259,0,173
2	109526766	.	G	A	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.57;ReadPosRankSum=-0.531;SB=0.00;SOR=0.793;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:343,0,306
2	109526778	.	T	C	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.260;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.40;ReadPosRankSum=0.592;SB=0.00;SOR=0.693;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:389,0,321
2	109526969	rs260632	G	A	1677.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.027;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=3.102;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-0.971;SB=-9.430e+02;SOR=0.680;VQSLOD=7.81;culprit=DP	GT:AD:DP:GQ:PL	0/1:68,66:135:99:1706,0,1893
2	109527373	rs260630	A	G	1008.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.804;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=0.712;SB=-3.470e+02;SOR=0.762;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,37:94:99:1037,0,1642
2	109745782	rs200435574	TGGCCGGTCCCCGCCACGCA	T	1657.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;RPA=2,1;RU=GGCCGGTCCCCGCCACGCA;SB=-2.148e+02;SOR=2.833;STR;VQSLOD=4.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:12:24:1695,24,0
2	109929958	rs6748434	A	G	1623.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-3.200e+02;SOR=2.985;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1652,123,0
2	109964431	rs6725756	C	T	674.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.438;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.129;HaplotypeScore=3.5100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=0.143;SB=-3.160e+02;SOR=0.433;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:703,0,765
2	109987876	.	G	A	1164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.989;DP=75;Dels=0.00;ExcessHet=3.0103;FS=6.303;HaplotypeScore=2.1232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.53;ReadPosRankSum=-0.282;SB=-1.210e+02;SOR=1.781;VQSLOD=4.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1193,0,949
2	110015309	rs10181644	T	C	1296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.658;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=3.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=0.738;SB=-6.080e+02;SOR=1.138;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,50:105:99:1325,0,1458
2	110049187	rs10165947	G	A	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.820;SB=-1.420e+02;SOR=0.243;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:248,0,254
2	110053209	rs7370446	T	G	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.987;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=-0.211;SB=-2.210e+02;SOR=0.693;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,19:59:99:593,0,1041
2	110325519	.	G	A	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.000;SB=-9.300e+01;SOR=0.586;VQSLOD=7.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:99:168,0,249
2	110332020	.	TA	T	45.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.605;POSITIVE_TRAIN_SITE;QD=4.16;RPA=23,22;RU=A;ReadPosRankSum=-0.087;SB=0.00;SOR=0.859;STR;VQSLOD=3.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,6:12:78:83,0,78
2	110372192	rs6594048	A	G	792.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-8.097e+01;SOR=3.816;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:821,60,0
2	110855123	rs2004273	G	T	2159.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-1.004e+03;SOR=1.329;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2188,160,0
2	110882699	rs2048243	A	G	818.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.537;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=1.605;SB=-2.010e+02;SOR=0.866;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,28:45:99:847,0,459
2	110886686	rs35963554	A	AGACCAGAT	2207.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=1.716;SB=-4.320e+02;SOR=0.593;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:2245,0,2260
2	110889108	rs11240790	C	T	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=0.431;SB=0.00;SOR=0.223;VQSLOD=9.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:94:94,0,244
2	110905664	rs1509417	G	A	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=1.693;SB=0.00;SOR=0.412;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:130,0,206
2	110919041	rs3817140	A	G	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.300;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-0.711;SB=0.00;SOR=0.275;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,8:23:99:255,0,529
2	110919321	rs2271244	C	T	623.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.585;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=8.238;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-0.820;SB=-2.620e+02;SOR=0.108;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,24:46:99:652,0,668
2	110922703	rs11675767	C	T	736.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.522;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.964;SB=-5.070e+02;SOR=0.622;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,30:55:99:765,0,572
2	110925981	rs116733998	C	T	693.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.655;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.1864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-1.214;SB=-1.650e+02;SOR=0.573;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:722,0,878
2	110927467	.	A	G	413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-0.412;SB=-2.320e+02;SOR=0.723;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:442,0,470
2	110935867	rs2271245	A	G	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-0.356;SB=0.00;SOR=0.914;VQSLOD=10.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:347,0,265
2	110942496	rs906815	G	A	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.000;SB=-3.401e+01;SOR=0.527;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:133,0,182
2	110942656	rs2018711	A	G	110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.91;ReadPosRankSum=-1.010;SB=-6.300e+01;SOR=0.412;VQSLOD=9.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:14:99:139,0,216
2	110942694	rs1810097	T	C	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.46;ReadPosRankSum=0.342;SB=-9.000e+01;SOR=0.586;VQSLOD=9.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:99:172,0,258
2	110942816	rs1810096	G	C	147.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=6.892;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-0.707;SB=-1.175e+02;SOR=0.042;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:176,0,173
2	110959898	rs11240794	C	G	1838.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=2.610;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=1.083;SB=-5.590e+02;SOR=0.479;VQSLOD=7.05;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,65:139:99:1867,0,2118
2	111406724	.	T	TCA	225.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.68;RPA=11,12;RU=CA;ReadPosRankSum=-1.390;SB=-1.765e+00;SOR=0.693;STR;VQSLOD=8.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,8:26:99:263,0,660
2	111644475	rs10188079	C	T	690.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.136;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQ0=0;MQRankSum=1.059;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-0.452;SB=-1.340e+02;SOR=0.650;VQSLOD=3.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,25:51:99:719,0,704
2	111644491	rs66815319	TA	T	560.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=1.200;POSITIVE_TRAIN_SITE;QD=15.15;RPA=2,1;RU=A;ReadPosRankSum=2.164;SB=-3.600e+01;SOR=0.458;STR;VQSLOD=2.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,16:38:99:598,0,838
2	111721142	rs72157974	ATGTGTGTGTG	A,ATG	6709.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.82;RPA=19,14,15;RU=TG;SB=-1.578e+03;SOR=2.584;STR;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,7,27:84:99:6747,374,151,376,0,155
2	111744435	rs12993549	A	C	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.175;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.066;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=1.838;SB=-2.302e+01;SOR=1.609;VQSLOD=7.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,8:24:99:234,0,430
2	111744774	rs138625972	G	C	575.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=0.917;SB=-3.200e+02;SOR=0.800;VQSLOD=8.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,23:64:99:604,0,1066
2	111753449	rs3761707	G	C	1366.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.012;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.786;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.543;SB=-5.580e+02;SOR=0.574;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,52:109:99:1395,0,1495
2	111789092	rs3789090	G	A	815.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.809;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.477;SB=-2.890e+02;SOR=0.709;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,32:67:99:844,0,929
2	111850427	rs77311714	T	G	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.864;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.129;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.32;ReadPosRankSum=-0.075;SB=-7.000e+01;SOR=0.275;VQSLOD=6.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:27:99:226,0,575
2	111871840	.	G	A	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.557;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.116;SB=-6.000e+01;SOR=0.634;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:468,0,563
2	111881232	.	G	T	377.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.293;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.99;ReadPosRankSum=-0.094;SB=-3.377e+01;SOR=0.551;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:406,0,169
2	111881263	.	A	ATTTTTT	956.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.50;RPA=11,17;RU=T;ReadPosRankSum=1.529;SB=-2.160e+02;SOR=0.776;STR;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:30:99:994,0,900
2	111881870	.	CT	C	48.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.25;RPA=16,15;RU=T;ReadPosRankSum=1.518;SB=-4.000e+01;SOR=0.527;STR;VQSLOD=7.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:18:86:86,0,138
2	111887703	rs4849417	T	A	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.627;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=0.102;SB=-4.076e+01;SOR=0.180;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:278,0,254
2	111899873	.	A	AT	1044.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.13;RPA=5,6;RU=T;ReadPosRankSum=0.730;SB=-5.060e+02;SOR=0.713;STR;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,38:62:99:1082,0,516
2	111902297	rs56866966	A	T	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-2.484;SB=0.00;SOR=0.859;VQSLOD=9.33;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:201,0,160
2	111907691	rs724710	T	C	464.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=-0.576;SB=-1.940e+02;SOR=1.165;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,18:25:99:493,0,149
2	111907788	rs41309782	A	G	526.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.453;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-0.118;SB=-3.220e+02;SOR=0.794;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:44:99:555,0,494
2	111909713	rs10193696	T	G	545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.019;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=-0.944;SB=0.00;SOR=0.906;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:574,0,378
2	111918916	rs56205524	G	T	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.254;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-0.802;SB=-9.400e+01;SOR=0.387;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:31:99:374,0,513
2	111919020	rs61634451	C	T	695.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.411;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.319;HaplotypeScore=2.6147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-0.171;SB=-2.960e+02;SOR=1.184;VQSLOD=7.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,27:73:99:724,0,992
2	111919160	rs57293149	G	A	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=2.430;SB=-1.765e+00;SOR=1.609;VQSLOD=8.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,10:21:99:337,0,381
2	111921434	rs7557850	A	G	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.022;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.4641;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=0.754;QD=6.18;ReadPosRankSum=-0.065;SB=0.00;SOR=0.160;VQSLOD=2.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:99:121,0,295
2	111921835	rs73954977	A	G	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.046;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=0.561;SB=-1.270e+02;SOR=0.333;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:429,0,186
2	112141772	rs78236988	C	T	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.935;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7855;MLEAC=1;MLEAF=0.500;MQ=49.70;MQ0=0;MQRankSum=-4.791;QD=14.56;ReadPosRankSum=-0.838;SB=-1.730e+02;SOR=0.836;VQSLOD=0.717;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,17:30:99:465,0,345
2	112582440	.	A	G	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.45;MQ0=0;MQRankSum=-2.972;QD=8.24;ReadPosRankSum=-0.436;SB=-2.302e+01;SOR=0.569;VQSLOD=1.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,7:20:99:193,0,391
2	112582523	rs74602614	G	A	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.110;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=0;MQRankSum=0.082;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-1.201;SB=-1.550e+02;SOR=1.705;VQSLOD=0.129;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,18:37:99:465,0,472
2	112582766	rs60136848	CTT	C	194.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=0.809;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-1.362;SB=-4.700e+01;SOR=0.446;VQSLOD=3.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,5:17:99:232,0,578
2	112583476	rs12614297	C	T	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.913;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-1.564;SB=-5.900e+01;SOR=1.162;VQSLOD=7.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,9:21:99:217,0,366
2	112588751	rs7587482	C	T	456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-7.597e+01;SOR=2.833;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:485,36,0
2	112590989	rs3761697	A	T	657.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-2.031e+02;SOR=2.093;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:686,51,0
2	112605465	rs4848800	T	C	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-2.031e+02;SOR=1.863;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:628,45,0
2	112619981	rs201128090	G	A	87.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=42.06;MQ0=2;MQRankSum=-3.719;QD=5.16;ReadPosRankSum=0.921;SB=0.00;SOR=0.399;VQSLOD=0.466;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,8:17:99:116,0,285
2	112621199	rs11689168	T	C	537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.589;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=0;MQRankSum=-0.097;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=-0.475;SB=0.00;SOR=2.531;VQSLOD=2.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,16:26:99:566,0,241
2	112621498	rs70962959	GA	G	783.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;MQRankSum=-0.042;QD=21.18;RPA=13,12;RU=A;ReadPosRankSum=-1.176;SB=-7.951e+01;SOR=2.147;STR;VQSLOD=1.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,35:45:53:821,53,0
2	112622642	rs80200688	C	T	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.34;MQ0=0;MQRankSum=-1.438;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=1.681;SB=-3.301e+01;SOR=0.582;VQSLOD=2.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:237,0,278
2	112622643	rs71414605	A	G	609.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=35.00;SB=-7.397e+01;SOR=3.383;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:638,48,0
2	112622650	rs56711676	T	C	463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-4.276e+01;SOR=3.912;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:492,36,0
2	112630412	rs141064868	A	C	358.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=0.00;SOR=4.804;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:387,30,0
2	112638517	rs4132166	G	C	485.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;SB=0.00;SOR=5.421;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:514,42,0
2	112641149	rs17835589	G	C	414.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.406;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=1.420;SB=-2.150e+02;SOR=0.765;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:443,0,198
2	112641266	rs71414610	G	C	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=0.648;SB=-3.500e+01;SOR=1.863;VQSLOD=6.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,7:10:87:241,0,87
2	112732716	rs2138568	A	G	626.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.21;SB=0.00;SOR=5.670;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:655,48,0
2	112813391	rs9308665	C	G	425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-2.401e+02;SOR=0.976;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:454,33,0
2	112817458	rs58182983	A	T	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.575;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.734;SB=-1.550e+02;SOR=1.473;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:534,0,638
2	112821880	rs60348850	A	G	771.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.082;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=6.455;HaplotypeScore=3.1180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-0.387;SB=-4.340e+02;SOR=0.181;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,33:55:99:800,0,633
2	112854584	rs4849005	A	G	228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-0.566;SB=-7.200e+01;SOR=0.458;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:257,0,199
2	112856165	rs4849007	C	A	1122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.692;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.797;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=1.425;SB=-6.410e+02;SOR=0.813;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,46:89:99:1151,0,1230
2	112865517	rs7562848	G	C	1113.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8773;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.17;SB=-7.630e+02;SOR=0.741;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:81:1142,81,0
2	112917102	rs1320360	G	C	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.889;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=8.422;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.03;ReadPosRankSum=-0.665;SB=-6.829e-02;SOR=2.872;VQSLOD=5.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,6:23:99:190,0,484
2	112933125	rs72831629	T	C	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.781;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-1.012;SB=-3.101e+01;SOR=0.693;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:196,0,210
2	112945220	rs11123130	G	A	523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.92;SB=-7.597e+01;SOR=3.126;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:552,42,0
2	112991098	rs11687980	C	A	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=-0.790;SB=0.00;SOR=1.022;VQSLOD=10.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:232,0,151
2	112991609	rs11308292	TA	T	231.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;RPA=5,4;RU=A;ReadPosRankSum=0.908;SB=0.00;SOR=1.022;STR;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:269,0,208
2	112995810	rs2254860	A	G	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.75;ReadPosRankSum=0.299;SB=-1.765e+00;SOR=0.804;VQSLOD=9.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:129,0,288
2	113074760	.	CT	C	327.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DP=27;ExcessHet=3.0103;FS=7.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.14;RPA=7,6;RU=T;ReadPosRankSum=-0.905;SB=-1.312e+02;SOR=0.089;STR;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:365,0,309
2	113074775	.	C	CT	105.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DP=32;ExcessHet=3.0103;FS=3.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.65;RPA=14,15;RU=T;ReadPosRankSum=1.529;SB=-4.100e+01;SOR=0.250;STR;VQSLOD=5.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,11:32:99:143,0,293
2	113089267	rs7601200	T	C	2264.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-9.250e+02;SOR=1.643;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2293,166,0
2	113090047	rs4578863	T	C	950.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.96;SB=-4.180e+02;SOR=1.609;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:75:979,75,0
2	113191010	rs13021601	A	C	213.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.700;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=47.19;MQ0=3;MQRankSum=1.040;POSITIVE_TRAIN_SITE;QD=8.22;ReadPosRankSum=-0.097;SB=-9.400e+01;SOR=1.022;VQSLOD=2.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,8:26:99:242,0,294
2	113240183	rs3811038	T	C	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.949;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.037;SB=-1.765e+00;SOR=1.071;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,17:43:99:545,0,853
2	113243321	rs3961919	G	A	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.113;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.802;SB=0.00;SOR=0.593;VQSLOD=10.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:263,0,275
2	113258916	.	C	T	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=47.70;MQ0=1;MQRankSum=-4.231;QD=13.86;ReadPosRankSum=-0.487;SB=-1.100e+02;SOR=0.896;VQSLOD=1.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,18:30:99:444,0,303
2	113278191	rs62157539	A	T	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-0.234;SB=-4.176e+01;SOR=0.148;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:237,0,322
2	113278192	rs74355047	G	GTA	307.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.533;DB;DP=17;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.10;ReadPosRankSum=-0.375;SB=-5.076e+01;SOR=0.148;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:345,0,465
2	113278193	rs62157540	G	A	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.251;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-0.328;SB=-4.176e+01;SOR=0.148;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:227,0,319
2	113286492	rs1465817	T	A	410.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.047;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.38;ReadPosRankSum=-2.316;SB=0.00;SOR=2.448;VQSLOD=8.27;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:3,12:15:75:439,0,75
2	113300330	rs4849071	G	A	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.509;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=0.591;SB=-1.765e+00;SOR=1.751;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:371,0,345
2	113305150	rs11123139	G	C	1082.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=18.606;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=-0.939;SB=-3.320e+02;SOR=2.073;VQSLOD=5.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,39:61:99:1111,0,542
2	113307076	.	C	CT	114.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.83;RPA=17,18;RU=T;ReadPosRankSum=1.001;SB=0.00;SOR=1.179;STR;VQSLOD=7.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,8:18:62:152,0,62
2	113308418	rs149363725	A	T	635.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.411;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-0.053;SB=-3.640e+02;SOR=0.756;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,27:53:99:664,0,671
2	113308516	rs2304555	T	A	1812.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-7.960e+02;SOR=1.412;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1841,132,0
2	113308622	rs3816140	C	T	564.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=0.00;SOR=5.549;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:593,45,0
2	113309473	rs1545133	C	T	1246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=3.340;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=0.506;SB=-7.240e+02;SOR=0.641;VQSLOD=7.56;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,49:126:99:1275,0,1846
2	113309653	rs13015822	C	A	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.690;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=0.839;SB=-7.997e+01;SOR=0.368;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,21:30:99:705,0,243
2	113310197	rs11351307	CT	C	600.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;DB;DP=71;ExcessHet=3.0103;FS=2.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.58;RPA=12,11;RU=T;ReadPosRankSum=0.394;SB=-7.200e+01;SOR=1.317;STR;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,34:71:99:638,0,771
2	113315735	rs57858974	CT	C	248.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=0.912;POSITIVE_TRAIN_SITE;QD=13.82;RPA=5,4;RU=T;ReadPosRankSum=-1.407;SB=-3.277e+01;SOR=0.387;STR;VQSLOD=2.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,11:19:99:286,0,179
2	113321900	rs41280572	T	C	1092.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.783;HaplotypeScore=1.6809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=1.417;SB=-4.710e+02;SOR=0.591;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,44:100:99:1121,0,1595
2	113326281	rs6746874	C	G	1959.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-6.180e+02;SOR=2.187;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1988,144,0
2	113326502	rs13010814	C	T	2064.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-4.000e+02;SOR=3.187;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2093,163,0
2	113343488	rs3789722	A	T	812.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SB=-7.797e+01;SOR=4.091;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:841,63,0
2	113344047	rs752992	T	C	2255.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-1.250e+03;SOR=0.971;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2284,166,0
2	113346413	rs3748024	C	G	391.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.065;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-0.947;SB=-2.640e+02;SOR=0.540;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,16:38:99:420,0,562
2	113346512	rs1047652	A	C	1074.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.85;SB=-6.650e+02;SOR=0.804;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1103,81,0
2	113404708	rs4849091	G	A	1033.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.917;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=7.547;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=1.054;SB=-2.950e+02;SOR=1.536;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,39:88:99:1062,0,1315
2	113417283	rs181513521	C	T	1339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.361;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.753;HaplotypeScore=1.9336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.158;SB=-7.420e+02;SOR=0.616;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,48:96:99:1368,0,1262
2	113478889	rs2063918	A	G	631.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=0.00;SOR=5.670;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:660,48,0
2	113479614	rs13386452	G	A	881.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=6.440;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-0.979;SB=-5.240e+02;SOR=0.257;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,34:69:99:910,0,1041
2	113479745	rs34781106	AC	A	1752.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;RPA=6,5;RU=C;SB=-8.750e+02;SOR=0.733;STR;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:52:99:1790,147,0
2	113479752	.	G	A	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.840;HaplotypeScore=6.9293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.27;ReadPosRankSum=1.031;SB=-3.120e+02;SOR=0.574;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:593,0,754
2	113480556	rs34912983	GC	G	262.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;RPA=4,3;RU=C;ReadPosRankSum=0.596;SB=-6.300e+01;SOR=0.593;STR;VQSLOD=7.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,10:34:99:300,0,860
2	113481439	rs13384583	T	A	538.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=6.349;HaplotypeScore=8.3181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-0.653;SB=-1.430e+02;SOR=1.502;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,19:52:99:567,0,902
2	113481547	rs2063919	A	G	1346.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-5.670e+02;SOR=1.270;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1375,102,0
2	113482779	rs4849116	A	C	4486.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-2.372e+03;SOR=1.016;VQSLOD=5.18;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4515,325,0
2	113484319	rs2138604	G	A	3388.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-1.963e+03;SOR=0.946;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3417,244,0
2	113484353	rs2138605	A	G	2747.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-1.173e+03;SOR=1.485;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2776,208,0
2	113484441	rs2138606	T	G	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.320;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.328;SB=-3.876e+01;SOR=0.201;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,17:34:99:589,0,544
2	113498566	rs3811040	A	G	787.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.361;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.156;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=0.659;SB=-2.400e+02;SOR=1.005;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,26:53:99:816,0,696
2	113513504	rs4848298	A	G	256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=0.353;SB=0.00;SOR=1.179;VQSLOD=10.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:285,0,160
2	113513825	rs6731822	T	C	4338.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;SB=-2.376e+03;SOR=0.941;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4367,334,0
2	113532885	rs3783550	G	T	2624.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-7.140e+02;SOR=2.215;VQSLOD=5.96;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2653,199,0
2	113535395	rs2071376	G	T	971.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-1.185e+02;SOR=3.690;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:1000,75,0
2	113535438	rs2071375	C	T	567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.743;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.582;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=1.617;SB=-8.200e+01;SOR=1.091;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,20:39:99:596,0,564
2	113537223	rs17561	C	A	876.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.391;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.033;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.563;SB=-2.230e+02;SOR=0.865;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,35:78:99:905,0,1260
2	113539972	rs2856838	G	A	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=-0.930;SB=0.00;SOR=1.085;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:204,0,117
2	113540084	rs2071373	G	A	1067.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-4.520e+02;SOR=1.675;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1096,81,0
2	113540177	rs1894399	C	T	765.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.120;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-0.880;SB=-4.170e+02;SOR=0.663;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,31:65:99:794,0,1030
2	113540205	rs1609682	G	T	2153.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-1.073e+03;SOR=1.098;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:69:99:2182,163,0
2	113737771	rs375914291	T	C	670.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.514;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.91;ReadPosRankSum=-1.774;SB=-2.220e+02;SOR=0.268;VQSLOD=6.34;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,27:45:99:699,0,536
2	113742734	rs7584409	G	A	632.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-7.997e+01;SOR=3.500;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:661,48,0
2	113742746	rs75448924	G	T	454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-8.097e+01;SOR=2.985;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:483,36,0
2	113763575	rs895497	A	G	2214.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.34;SB=-1.325e+03;SOR=0.934;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2243,163,0
2	113783909	rs6744874	A	T	2608.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.32;SB=-4.080e+02;SOR=3.581;VQSLOD=4.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2637,196,0
2	113785020	rs12711747	A	G	444.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=0.00;SOR=5.136;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:473,36,0
2	113785727	rs1562304	A	G	451.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-4.176e+01;SOR=3.767;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:480,36,0
2	113788590	rs3752739	C	G	1209.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-4.420e+02;SOR=1.981;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1238,96,0
2	113818632	rs2251872	G	A	2548.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-7.020e+02;SOR=2.303;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2577,187,0
2	113818702	rs2515395	G	C	1146.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-3.777e+01;SOR=5.610;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:96:1175,96,0
2	113818738	rs1374285	G	A	601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=0.00;SOR=5.670;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:630,48,0
2	113819536	rs2472187	A	G	517.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=0.00;SOR=5.421;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:546,42,0
2	113819614	rs2252007	T	C	1066.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-4.410e+02;SOR=1.329;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1095,81,0
2	113830150	rs3811049	G	T	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.808;SB=0.00;SOR=0.693;VQSLOD=10.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:224,0,199
2	113830173	rs3811050	C	T	999.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.54;SB=-3.577e+01;SOR=5.211;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:1028,78,0
2	113830201	rs3811051	T	G	1712.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SB=-1.225e+02;SOR=4.977;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1741,141,0
2	113830563	rs12469822	G	A	715.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.512;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.139;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=1.146;SB=-2.670e+02;SOR=0.246;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,26:44:99:744,0,466
2	113830582	rs4849150	A	C	618.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.969;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.655;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=-0.060;SB=-1.633e+02;SOR=0.086;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,21:32:99:647,0,333
2	113832312	rs6761276	T	C	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.539;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.36;ReadPosRankSum=-0.207;SB=-2.510e+02;SOR=0.552;VQSLOD=8.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,21:64:99:563,0,1116
2	113832333	rs6743376	C	A	459.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.448;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=-1.676;SB=-2.180e+02;SOR=0.682;VQSLOD=8.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,20:54:99:488,0,883
2	113877495	rs928940	G	T	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.501;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=-0.371;SB=-1.450e+02;SOR=0.573;VQSLOD=10.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,14:19:99:408,0,111
2	113888900	rs380092	T	A	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-1.441;SB=-1.020e+02;SOR=0.776;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:429,0,385
2	113890304	rs315952	T	C	1794.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=3.198;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.404;SB=-1.075e+03;SOR=0.439;VQSLOD=7.95;culprit=DP	GT:AD:DP:GQ:PL	0/1:60,69:129:99:1823,0,1556
2	113953401	rs923693	A	G	1319.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-7.170e+02;SOR=0.850;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1348,99,0
2	113953657	rs4849169	A	C	1245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=1.295;SB=-4.180e+02;SOR=0.725;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1274,0,1337
2	113953952	rs4848318	T	C	510.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.063;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-0.318;SB=-3.200e+01;SOR=0.930;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:539,0,812
2	113953973	rs62856760	A	AT	468.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.532;DB;DP=35;ExcessHet=3.0103;FS=2.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.118;SB=-9.732e-01;SOR=1.802;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,14:35:99:506,0,868
2	113953974	rs10579377	GACA	G	475.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=1.503;SB=-9.732e-01;SOR=1.112;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,9:31:99:513,0,1312
2	113954006	rs2241978	A	G	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.917;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=-0.277;SB=0.00;SOR=0.283;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,7:20:99:224,0,447
2	113954879	rs902696	A	C	1139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.951;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.272;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=0.685;SB=-4.840e+02;SOR=1.244;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1168,0,863
2	113955074	rs902695	G	A	2110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.028;SB=-1.197e+03;SOR=0.611;VQSLOD=8.42;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,79:144:99:2139,0,1675
2	113956371	rs2276561	G	C	1070.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=6.868;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.686;SB=-6.170e+02;SOR=0.729;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,43:89:99:1099,0,1176
2	113956821	rs2305133	C	G	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.252;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.59;ReadPosRankSum=-0.175;SB=-2.501e+01;SOR=0.465;VQSLOD=9.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:20:99:120,0,440
2	113994417	rs1110839	G	T	289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.15;ReadPosRankSum=-0.086;SB=0.00;SOR=1.981;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:82:318,0,82
2	113996440	rs78983530	C	T	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.744;SB=0.00;SOR=0.446;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:250,0,382
2	113996458	rs368218913	C	CAT	593.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.84;ReadPosRankSum=0.952;SB=0.00;SOR=0.560;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:631,0,708
2	113996555	rs150615913	CAA	C	1466.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.551;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.026;SB=-6.620e+02;SOR=0.673;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,30:65:99:1504,0,1811
2	113996565	rs117024597	A	G	759.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.622;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-0.621;SB=-4.330e+02;SOR=0.719;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,32:68:99:788,0,865
2	113996772	rs143833481	G	A	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=-0.984;SB=0.00;SOR=1.609;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:92:244,0,92
2	113999023	rs4322837	T	C	1649.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.883;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=7.340;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-1.377;SB=-8.750e+02;SOR=0.560;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,56:112:99:1678,0,1334
2	114000132	rs115905562	C	T	946.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.773;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.389;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.617;SB=-2.900e+02;SOR=0.382;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,37:77:99:975,0,1158
2	114000458	rs902691	C	A	1302.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SB=-2.331e+02;SOR=3.145;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:39:99:1331,99,0
2	114001903	rs74370449	C	T	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=-0.230;SB=0.00;SOR=0.693;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:204,0,194
2	114017005	rs75788139	C	T	272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.20;ReadPosRankSum=0.739;SB=-1.430e+02;SOR=0.520;VQSLOD=7.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,12:44:99:301,0,865
2	114017029	rs6734610	A	G	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.45;ReadPosRankSum=-0.540;SB=-1.870e+02;SOR=0.883;VQSLOD=7.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,15:46:99:371,0,814
2	114020848	rs1466018	T	G	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.030;DB;DP=29;Dels=0.03;ExcessHet=3.0103;FS=8.759;HaplotypeScore=7.5872;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=0.938;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=-0.789;SB=-1.480e+02;SOR=0.049;VQSLOD=0.417;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,12:28:99:275,0,536
2	114340494	rs7349209	G	A	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.43;MQ0=0;MQRankSum=-1.963;QD=3.04;ReadPosRankSum=0.660;SB=-2.203e+01;SOR=1.445;VQSLOD=1.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:89:89,0,446
2	114357926	rs149878741	CCT	C	516.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.46;SB=-5.476e+01;SOR=3.258;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:554,30,0
2	114358772	rs78505129	G	A	828.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=8;QD=20.21;SB=-5.350e+02;SOR=1.022;VQSLOD=2.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:7,34:41:63:857,63,0
2	114391988	rs115060414	C	T	154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.49;MQ0=0;MQRankSum=-2.781;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=0.230;SB=0.00;SOR=0.693;VQSLOD=2.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:183,0,186
2	114391995	rs57719031	GC	G	142.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.11;MQ0=0;MQRankSum=-2.329;POSITIVE_TRAIN_SITE;QD=14.27;RPA=2,1;RU=C;ReadPosRankSum=0.398;SB=0.00;SOR=0.693;STR;VQSLOD=3.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:11:99:180,0,188
2	114480548	rs17683255	A	G	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.206;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=1.437;SB=0.00;SOR=0.693;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:345,0,338
2	114480812	rs66921111	A	AAAC	2288.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.88;RPA=1,2;RU=AAC;SB=-5.220e+02;SOR=2.362;STR;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:40:99:2326,117,0
2	114480881	rs73955056	A	G	199.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.894;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.191;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-0.761;SB=-3.577e+01;SOR=0.078;VQSLOD=7.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,8:21:99:228,0,460
2	114486907	rs4849269	T	C	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=-0.586;SB=0.00;SOR=0.180;VQSLOD=9.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:86:86,0,295
2	114492135	rs2305254	C	T	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.024;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.051;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=0.875;SB=-1.460e+02;SOR=1.329;VQSLOD=7.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,14:34:99:329,0,630
2	114493509	rs142249018	CT	C	207.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;RPA=6,5;RU=T;ReadPosRankSum=0.719;SB=-1.000e+02;SOR=0.693;STR;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:22:99:245,0,269
2	114493524	rs10199704	C	T	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.114;SB=-9.900e+01;SOR=0.787;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:275,0,254
2	114501112	rs3748906	C	T	714.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-0.022;SB=-1.660e+02;SOR=0.772;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,26:46:99:743,0,532
2	114501242	rs3748907	T	C	1243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.675;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=1.067;SB=-6.480e+02;SOR=0.669;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1272,0,1251
2	114503630	rs58673639	T	G	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.684;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.070;SB=-3.777e+01;SOR=0.223;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:317,0,341
2	114513386	rs7578249	C	T	926.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.136;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.625;SB=-2.750e+02;SOR=0.990;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,33:69:99:955,0,907
2	114513787	rs4538208	C	G	345.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-1.205e+02;SOR=1.802;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:374,30,0
2	114513901	rs4321376	C	T	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.12;ReadPosRankSum=1.003;SB=-5.500e+01;SOR=1.270;VQSLOD=6.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,7:23:99:192,0,403
2	116066984	rs975453	G	A	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.628;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-0.234;SB=-4.176e+01;SOR=0.098;VQSLOD=7.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,9:22:99:239,0,465
2	116099725	rs843403	A	T	1104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.376;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.866;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=1.304;SB=-4.340e+02;SOR=0.836;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,44:87:99:1133,0,1188
2	116226309	rs843440	G	A	324.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-1.245e+02;SOR=1.609;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:353,27,0
2	116497479	rs1550854	A	G	2303.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-5.020e+02;SOR=2.584;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2332,172,0
2	116497528	rs1550853	A	G	1092.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.82;SB=-3.277e+01;SOR=5.421;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:87:1121,87,0
2	116525960	rs1446495	G	A	3608.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.911;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7605;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.07;ReadPosRankSum=-0.492;SB=-1.950e+03;SOR=1.040;VQSLOD=2.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,118:120:99:3637,265,0
2	116534922	rs1374271	A	G	3318.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-1.339e+03;SOR=1.633;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3347,241,0
2	116535086	rs2421339	T	C	420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-4.276e+01;SOR=3.767;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:449,33,0
2	116539846	rs36082071	GA	G	1206.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;RPA=6,5;RU=A;SB=-1.601e+02;SOR=3.716;STR;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1244,126,0
2	116539856	rs144064445	T	C	754.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.404;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.92;MQ0=0;MQRankSum=0.841;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-0.493;SB=-1.090e+02;SOR=0.389;VQSLOD=3.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,26:47:99:783,0,631
2	116548526	rs6735355	A	G	371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-4.276e+01;SOR=3.442;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:400,30,0
2	116548820	rs3738879	C	T	1274.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-6.060e+02;SOR=1.151;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1303,99,0
2	116593675	rs10549769	ATG	A	1987.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.94;RPA=9,8;RU=TG;SB=-5.650e+02;SOR=1.958;STR;VQSLOD=5.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:52:99:2025,150,0
2	116598546	rs272011	G	A	885.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.59;SB=-7.597e+01;SOR=4.174;VQSLOD=4.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:914,69,0
2	116599659	rs272010	A	T	785.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.74;SB=-1.105e+02;SOR=3.442;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:814,60,0
2	116599927	rs272009	T	C	2267.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=-1.232e+03;SOR=1.002;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2296,175,0
2	118575215	.	C	G	630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.478;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=0.514;SB=-3.610e+02;SOR=0.560;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,23:39:99:659,0,477
2	118578691	rs3214497	TA	T	163.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;DB;DP=33;ExcessHet=3.0103;FS=4.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.96;RPA=9,8;RU=A;ReadPosRankSum=-0.535;SB=-9.000e+01;SOR=0.163;STR;VQSLOD=5.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,11:33:99:201,0,565
2	118582936	rs148977188	A	ATAAAG	1249.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;DB;DP=51;ExcessHet=3.0103;FS=6.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.325;SB=-4.620e+02;SOR=1.034;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,18:51:99:1287,0,2399
2	118688754	rs971754	T	C	1228.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-3.570e+02;SOR=2.303;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1257,99,0
2	118704478	rs7580124	T	G	1445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-3.300e+02;SOR=2.584;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1474,108,0
2	118704503	rs2303329	A	G	1227.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.49;SB=-8.297e+01;SOR=4.743;VQSLOD=5.46;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1256,93,0
2	118705570	rs10186396	A	G	741.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-2.890e+02;SOR=1.708;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:60:770,60,0
2	118706879	rs1035598	A	G	1919.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-8.950e+02;SOR=1.292;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1948,150,0
2	118731573	rs748767	G	A	3292.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-2.034e+03;SOR=0.784;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:114:99:3321,247,0
2	118732975	rs6722547	T	C	1166.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-4.820e+02;SOR=1.547;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1195,87,0
2	118735395	rs889899	G	A	896.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;SB=-1.453e+02;SOR=3.098;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:69:925,69,0
2	118752903	rs148615806	T	A	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.607;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=1.271;SB=-6.500e+01;SOR=0.330;VQSLOD=7.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,11:28:99:289,0,544
2	118753148	rs10649670	A	ATC	1992.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=-2.831e+02;SOR=3.442;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:39:99:2030,111,0
2	118753240	rs4142226	G	A	374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.78;SB=0.00;SOR=4.804;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:403,30,0
2	118764242	.	C	CA	1983.73	PASS	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.91;RPA=1,2;RU=A;SB=-6.530e+02;SOR=1.714;STR;VQSLOD=3.31;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,45:46:99:2021,135,0
2	118764527	rs4849654	T	A	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.25;SB=0.00;SOR=4.804;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:412,30,0
2	118766024	rs10864966	A	G	1789.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-1.603e+02;SOR=4.362;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1818,132,0
2	118771663	rs12477588	A	G	1013.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-4.490e+02;SOR=1.329;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1042,75,0
2	118850939	.	AGATGAT	A	461.80	PASS	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=28.22;RPA=9,7;RU=GAT;SB=-8.676e+01;SOR=2.303;STR;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:15:18:499,18,0
2	118851236	.	T	TGAG	476.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.66;MQ0=0;MQRankSum=1.244;QD=26.49;ReadPosRankSum=1.640;SB=-2.550e+02;SOR=0.693;VQSLOD=2.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,12:21:99:514,0,213
2	118851239	rs4849679	T	G	399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.7635;MLEAC=1;MLEAF=0.500;MQ=41.66;MQ0=4;MQRankSum=1.483;QD=14.28;ReadPosRankSum=1.960;SB=-2.200e+02;SOR=0.368;VQSLOD=1.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,17:28:99:428,0,148
2	118851381	rs370022946	TGAA	T	1014.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.40;MQ0=0;MQRankSum=0.464;QD=34.40;ReadPosRankSum=0.640;SB=-4.960e+02;SOR=0.223;VQSLOD=1.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,18:19:7:1051,0,7
2	118851677	.	TGATGAGGAGGAG	T	2141.73	PASS	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;QD=32.53;SB=-1.075e+03;SOR=0.818;VQSLOD=3.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:2179,45,0
2	118866033	.	G	GA	1113.73	PASS	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.73;RPA=1,2;RU=A;SB=-3.790e+02;SOR=1.609;STR;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:26:75:1151,75,0
2	119591683	rs7588093	C	A	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.700;SB=-1.765e+00;SOR=1.911;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:166,0,138
2	119700096	rs2077344	T	C	692.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.160;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.354;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=0.883;SB=-1.240e+02;SOR=1.085;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,26:54:99:721,0,791
2	119748135	rs3835093	TC	T	377.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;DB;DP=24;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=1.268;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.74;RPA=10,9;RU=C;ReadPosRankSum=-1.083;SB=-1.730e+02;SOR=0.772;STR;VQSLOD=0.071;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,14:24:99:415,0,216
2	119749477	rs2304708	T	G	915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-5.730e+02;SOR=0.760;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:69:944,69,0
2	119751867	rs11678719	C	T	587.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.424;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.168;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.880;SB=-1.310e+02;SOR=0.166;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,20:45:99:616,0,822
2	119915132	rs11308896	CG	C	446.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;RPA=5,4;RU=G;SB=-7.197e+01;SOR=2.833;STR;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:484,39,0
2	119915249	rs7556873	T	C	778.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.538;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.885;HaplotypeScore=1.8907;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.001;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=1.353;SB=-3.080e+02;SOR=1.364;VQSLOD=0.149;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,29:56:99:807,0,602
2	119915509	rs1317848	G	T	79.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.99;ReadPosRankSum=-1.640;SB=-3.500e+01;SOR=0.105;VQSLOD=5.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:108,0,411
2	119988739	rs73948626	C	T	943.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.924;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-0.714;SB=-6.500e+01;SOR=0.623;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,31:76:99:972,0,1544
2	120003642	rs838083	C	T	2429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-1.192e+03;SOR=1.103;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2458,184,0
2	120014985	rs838072	A	G	382.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=0.00;SOR=4.804;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:411,30,0
2	120020901	rs141086904	C	T	657.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=3.841;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.65;ReadPosRankSum=0.330;SB=-2.550e+02;SOR=1.258;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:686,0,749
2	120059895	rs67060344	G	GGAAA	1216.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;RPA=1,2;RU=GAAA;SB=0.00;SOR=5.994;STR;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:1254,57,0
2	120059988	rs1890	T	C	1657.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5184;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-6.600e+02;SOR=1.919;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1686,123,0
2	120060082	rs1052500	T	C	1960.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-7.440e+02;SOR=1.802;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1989,144,0
2	120078778	rs1132267	T	C	1521.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-9.690e+02;SOR=0.693;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1550,111,0
2	120125029	rs2084202	A	G	545.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-1.603e+02;SOR=2.179;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:42:574,42,0
2	120125363	rs3091405	C	A	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.725;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.340;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=0.417;SB=-2.801e+01;SOR=2.348;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,20:35:99:680,0,507
2	120125936	rs2244135	T	C	1033.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-5.200e+02;SOR=1.112;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:33:78:1062,78,0
2	120187344	rs11123523	A	G	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=0.163;SB=-4.276e+01;SOR=0.495;VQSLOD=10.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:255,0,120
2	120194651	rs33980232	A	AGTGTGC	3747.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.93;SB=-1.234e+03;SOR=1.552;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:40:99:3785,117,0
2	120197670	rs1042656	G	A	622.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-1.115e+02;SOR=2.948;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:651,48,0
2	120199140	rs1126839	A	G	1484.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.55;SB=-8.440e+02;SOR=1.136;VQSLOD=6.46;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1513,114,0
2	120209689	rs2587692	A	G	4893.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-2.042e+03;SOR=1.345;VQSLOD=5.60;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4922,370,0
2	120219287	.	CA	C	68.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;DP=15;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=0.728;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=4.58;RPA=21,20;RU=A;ReadPosRankSum=0.563;SB=-1.769e+00;SOR=2.030;STR;VQSLOD=0.110;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,8:15:99:106,0,122
2	120221585	rs2253870	G	A	401.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=0.00;SOR=4.977;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:430,33,0
2	120221984	rs2579647	A	C	290.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.43;SB=-1.623e+02;SOR=1.270;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:319,24,0
2	120230901	rs2579640	C	T	423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=0.00;SOR=5.283;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:452,36,0
2	120230998	rs2579641	G	A	2001.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-6.820e+02;SOR=2.165;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2030,153,0
2	120231165	rs2587701	T	C	3228.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-1.725e+03;SOR=1.029;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3257,250,0
2	120231303	rs2587702	T	C	1364.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-4.060e+02;SOR=2.303;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1393,108,0
2	120330181	rs114202428	A	G	1314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.935;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.805;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=2.502;SB=-7.170e+02;SOR=0.864;VQSLOD=7.06;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:41,47:88:99:1343,0,986
2	120344873	rs6726971	T	A	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.906;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=-0.463;SB=-1.050e+02;SOR=0.330;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:327,0,404
2	120358763	rs115643780	G	T	381.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.46;ReadPosRankSum=1.107;SB=0.00;SOR=1.739;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:410,0,144
2	120362249	.	T	A	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.192;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.639;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.81;ReadPosRankSum=-0.820;SB=-5.100e+01;SOR=1.194;VQSLOD=6.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,14:39:99:411,0,755
2	120362407	rs1568540	C	T	854.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.375;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.793;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=1.000;SB=-5.050e+02;SOR=0.819;VQSLOD=7.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:55,37:92:99:883,0,1561
2	120362897	rs1521914	T	A	1220.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=-1.523e+02;SOR=3.737;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:96:1249,96,0
2	120366057	rs368769180	G	GT	549.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.540;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.91;RPA=12,13;RU=T;ReadPosRankSum=-0.145;SB=-1.751e+02;SOR=0.976;STR;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,23:25:46:587,46,0
2	120366295	rs1521915	T	C	502.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.486;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-0.317;SB=-2.030e+02;SOR=0.769;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:531,0,666
2	120369300	rs10864986	T	C	1895.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-1.095e+03;SOR=1.010;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1924,144,0
2	120385094	rs200629080	GATATATAT	GAT,G	3038.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.061;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.76;RPA=13,10,9;RU=AT;ReadPosRankSum=0.845;SB=-2.780e+02;SOR=3.160;STR;VQSLOD=4.90;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,24,16:47:99:3076,531,496,903,0,901
2	120385157	rs2177093	C	G	937.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.924;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.537;SB=-4.710e+02;SOR=0.892;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,40:88:99:966,0,1242
2	120388412	rs2272058	G	A	2395.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.263e+03;SOR=1.165;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:81:99:2424,181,0
2	120397694	rs939773	A	G	376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=0.00;SOR=4.804;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:405,30,0
2	120404629	rs11349518	AT	A	1243.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.377;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.328;POSITIVE_TRAIN_SITE;QD=20.06;RPA=14,13;RU=T;ReadPosRankSum=0.358;SB=-5.570e+02;SOR=1.085;STR;VQSLOD=3.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,58:73:71:1281,71,0
2	120409351	rs1521911	C	T	77.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.86;ReadPosRankSum=0.364;SB=0.00;SOR=0.138;VQSLOD=9.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:106,0,439
2	120409430	rs1521912	A	G	1876.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-4.330e+02;SOR=2.833;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1905,144,0
2	120414083	rs6761357	C	T	705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-1.613e+02;SOR=2.636;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:734,54,0
2	120438523	rs13011768	A	G	3978.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-2.341e+03;SOR=0.879;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4007,289,0
2	120438696	rs939777	A	G	3488.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-2.000e+03;SOR=0.813;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3517,253,0
2	120439230	rs1983406	C	G	2507.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-1.560e+03;SOR=0.821;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2536,184,0
2	120439459	rs4849797	C	A	756.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.40;SB=-1.603e+02;SOR=2.737;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:785,57,0
2	120443443	rs939778	A	G	1087.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.23;SB=-2.471e+02;SOR=2.694;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1116,81,0
2	120620092	.	A	AT	142.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.42;RPA=15,16;RU=T;ReadPosRankSum=-0.758;SB=-5.800e+01;SOR=0.724;STR;VQSLOD=4.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,14:63:99:180,0,873
2	120643280	.	G	GT	207.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;DP=16;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;RPA=6,7;RU=T;ReadPosRankSum=-0.726;SB=-6.897e+01;SOR=0.105;STR;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:245,0,157
2	120689905	rs2292361	A	G	887.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.970;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.096;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=1.131;SB=-1.765e+00;SOR=1.734;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,26:51:99:916,0,775
2	120703842	rs2289581	A	G	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=1.103;SB=0.00;SOR=1.473;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:354,0,149
2	120704164	.	A	AT	1207.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=0.888;POSITIVE_TRAIN_SITE;QD=14.73;RPA=1,2;RU=T;ReadPosRankSum=0.075;SB=-5.200e+02;SOR=0.654;STR;VQSLOD=2.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,47:86:99:1245,0,1150
2	120704166	.	G	T	1080.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.147;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=42.9429;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=0.930;QD=13.51;ReadPosRankSum=0.803;SB=-4.750e+02;SOR=0.787;VQSLOD=1.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,44:80:99:1109,0,949
2	120718322	rs12618050	A	G	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.287;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.909;SB=0.00;SOR=0.330;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:302,0,458
2	120718657	.	T	G	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.15;ReadPosRankSum=0.864;SB=0.00;SOR=1.022;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:234,0,157
2	120720364	rs374924242	G	T	1009.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.17;ReadPosRankSum=0.046;SB=-3.440e+02;SOR=0.787;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,38:83:99:1038,0,1124
2	120734737	.	C	CA	101.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;DP=18;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.36;RPA=10,11;RU=A;ReadPosRankSum=-2.723;SB=-2.302e+01;SOR=1.329;STR;VQSLOD=4.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,7:18:99:139,0,193
2	120776972	rs3216703	TG	T	635.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=-1.341;SB=0.00;SOR=1.179;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:29:99:673,0,439
2	120776988	rs17669093	A	G	383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-2.006;SB=0.00;SOR=1.127;VQSLOD=10.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:412,0,259
2	120830815	rs3738970	A	G	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=15.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-0.140;SB=-2.657e-01;SOR=4.615;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:309,0,202
2	120885310	rs1034489	G	A	1356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.827;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=2.870;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-1.030;SB=-5.120e+02;SOR=1.062;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,47:90:99:1385,0,1140
2	120889173	rs3738968	G	C	1280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090;DB;DP=86;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-0.631;SB=-3.180e+02;SOR=0.778;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1309,0,1165
2	120900736	rs75582263	T	C	801.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.938;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.033;SB=-4.570e+02;SOR=0.458;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,33:74:99:830,0,989
2	120918585	rs12617570	A	C	692.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.838;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=0.300;SB=-3.900e+02;SOR=0.363;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:721,0,576
2	120979946	.	C	T	1857.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.524;DP=130;Dels=0.00;ExcessHet=3.0103;FS=1.398;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-0.744;SB=-9.380e+02;SOR=0.865;VQSLOD=6.30;culprit=DP	GT:AD:DP:GQ:PL	0/1:61,69:130:99:1886,0,1699
2	120980428	rs11550347	G	C	2060.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.926;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=4.141;HaplotypeScore=3.4865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=-1.456;SB=-9.430e+02;SOR=1.048;VQSLOD=7.29;culprit=DP	GT:AD:DP:GQ:PL	0/1:62,75:137:99:2089,0,1879
2	121035924	rs3839040	CT	C	216.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=-0.204;SB=0.00;SOR=1.085;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:254,0,167
2	121036025	rs76447955	G	C	572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.271;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.374;SB=-2.440e+02;SOR=0.434;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,22:46:99:601,0,658
2	121036385	rs12711939	T	G	1159.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=7.576;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.461;SB=-5.100e+02;SOR=0.247;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,45:95:99:1188,0,1463
2	121036386	rs12711940	T	A	1185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=7.674;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.723;SB=-5.520e+02;SOR=0.246;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,46:93:99:1214,0,1307
2	121043403	rs4091515	G	A	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.928;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=0.187;SB=0.00;SOR=0.804;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:297,0,271
2	121050989	rs1065518	T	A	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.92;ReadPosRankSum=1.103;SB=-2.103e+01;SOR=0.527;VQSLOD=8.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:132,0,293
2	121103903	rs11900747	T	G	76.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.68;ReadPosRankSum=-1.559;SB=-7.300e+01;SOR=0.250;VQSLOD=9.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,5:10:99:105,0,133
2	121223274	rs17050160	C	T	1389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.091;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.787;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-0.692;SB=-7.940e+02;SOR=0.559;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,54:94:99:1418,0,1082
2	121708885	.	G	A	663.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.177;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-0.941;SB=-3.400e+02;SOR=0.747;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,26:62:99:692,0,892
2	121709091	rs11681136	G	A	346.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=0.00;SOR=4.804;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:375,30,0
2	121713022	rs6718382	C	G	1052.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-2.061e+02;SOR=2.765;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:78:1081,78,0
2	121713030	rs12614482	G	A	933.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-1.115e+02;SOR=3.767;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:962,72,0
2	121713041	rs12617878	T	C	950.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-4.176e+01;SOR=5.058;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:979,72,0
2	121726447	rs2592595	G	A	1408.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.54;SB=-6.000e+02;SOR=1.402;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1437,105,0
2	121729323	rs2677507	A	G	809.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-1.603e+02;SOR=3.014;VQSLOD=7.02;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,25:25:66:838,66,0
2	121729360	rs2592592	T	C	1214.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;SB=-2.960e+02;SOR=2.432;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1243,93,0
2	121729490	rs2592591	C	T	4161.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-1.768e+03;SOR=1.364;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,136:137:99:4190,307,0
2	121729686	rs2592590	T	C	1740.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.88;SB=-2.381e+02;SOR=3.611;VQSLOD=4.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1769,129,0
2	121730138	rs3106962	C	G	3728.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.53;SB=-8.210e+02;SOR=2.942;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3757,271,0
2	121730478	rs280201	G	T	520.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-4.176e+01;SOR=3.912;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:549,42,0
2	121740190	rs1968619	C	T	749.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SB=-4.176e+01;SOR=4.615;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:778,60,0
2	121740194	rs1530580	T	G	770.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-4.276e+01;SOR=4.615;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:799,60,0
2	121740505	rs280196	C	T	1577.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-3.550e+02;SOR=3.098;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1606,123,0
2	121981950	rs11890430	A	G	652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.710;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=4.226;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-1.609;SB=-1.550e+02;SOR=1.392;VQSLOD=7.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:33,24:57:99:681,0,884
2	121982011	rs4384798	T	A	955.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.113;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=4.821;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-0.686;SB=-6.260e+02;SOR=0.307;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,38:68:99:984,0,755
2	121989489	rs2304667	G	A	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.168;SB=-1.050e+02;SOR=0.446;VQSLOD=10.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:244,0,187
2	121995151	rs2260394	T	C	573.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.589;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.424;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.141;SB=-1.520e+02;SOR=0.407;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,21:44:99:602,0,632
2	121997120	rs41278936	G	A	790.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.903;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=-0.875;SB=-3.110e+02;SOR=0.693;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,32:81:99:819,0,1443
2	122004596	rs2252862	C	G	795.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=7.764;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.356;SB=-2.850e+02;SOR=0.139;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,29:49:99:824,0,640
2	122005727	.	C	G	683.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.48;ReadPosRankSum=0.422;SB=-2.570e+02;SOR=0.350;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,25:37:99:712,0,324
2	122006892	.	C	T	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-0.134;SB=-1.390e+02;SOR=0.836;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:361,0,226
2	122007378	rs2119021	A	C	845.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.860;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.161;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=-0.249;SB=-6.800e+01;SOR=1.493;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,27:42:99:874,0,391
2	122122969	rs12617632	G	A	232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.449;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.000;SB=-3.777e+01;SOR=0.132;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:261,0,350
2	122125104	rs2304663	C	T	1482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.914;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=3.273;HaplotypeScore=2.9571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=1.792;SB=-3.690e+02;SOR=1.161;VQSLOD=7.37;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:41,51:93:99:1511,0,1181
2	122161850	rs9807995	C	T	404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.250;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.500;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-0.739;SB=-1.240e+02;SOR=1.194;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:433,0,433
2	122187367	rs6541775	C	T	193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-0.247;SB=0.00;SOR=0.693;VQSLOD=10.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:222,0,246
2	122205778	rs34350940	G	A	901.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=3.233;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-0.751;SB=-3.270e+02;SOR=1.143;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,34:78:99:930,0,1155
2	122216419	rs2304560	A	G	759.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.478;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=-1.733;SB=-3.260e+02;SOR=0.680;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,28:71:99:788,0,1113
2	122220032	rs114715944	T	C	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.911;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.195;SB=-1.765e+00;SOR=1.270;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:232,0,301
2	122273187	rs6711830	C	G	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.951;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=0.870;SB=0.00;SOR=0.420;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:429,0,265
2	122283313	rs12052948	G	T	513.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.998;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=0.172;SB=-2.210e+02;SOR=0.693;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,22:53:99:542,0,820
2	122286442	rs934760	A	G	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-0.991;SB=-7.400e+01;SOR=0.223;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:266,0,399
2	122484966	rs17016977	A	G	839.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.470;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.735;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=1.681;SB=-1.940e+02;SOR=1.234;VQSLOD=7.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,30:66:99:868,0,1118
2	122485106	rs1056006	A	C	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.715;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.772;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.76;ReadPosRankSum=-0.045;SB=-7.300e+01;SOR=0.124;VQSLOD=7.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:168,0,350
2	122489374	rs12616209	C	T	744.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.134;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=0.547;SB=-4.090e+02;SOR=0.739;VQSLOD=9.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,33:87:99:773,0,1348
2	122489831	rs17006779	T	A	403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-1.638;SB=-2.640e+02;SOR=0.223;VQSLOD=7.79;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,16:23:99:432,0,186
2	122489932	rs6726677	C	T	255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.58;ReadPosRankSum=0.728;SB=0.00;SOR=2.303;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:44:284,0,44
2	122520713	.	G	GT	102.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQ0=0;MQRankSum=1.160;POSITIVE_TRAIN_SITE;QD=5.41;RPA=23,24;RU=T;ReadPosRankSum=0.449;SB=-2.044e+00;SOR=1.609;STR;VQSLOD=2.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,9:36:78:140,0,78
2	125192068	rs1425745	T	C	1269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.010;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=1.631;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-0.428;SB=-5.230e+02;SOR=0.869;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,51:101:99:1298,0,1395
2	125204264	rs6715476	A	G	147.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.880;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.79;ReadPosRankSum=-0.897;SB=-6.973e+00;SOR=1.336;VQSLOD=6.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,7:39:99:176,0,885
2	125204769	rs78640610	AT	A	170.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.03;RPA=11,10;RU=T;ReadPosRankSum=-0.524;SB=-5.597e+01;SOR=1.022;STR;VQSLOD=8.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:1,9:12:1:205,1,0
2	125405302	rs924802	C	T	3739.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-1.219e+03;SOR=2.012;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3768,277,0
2	125669260	rs2602655	A	G	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=0.056;SB=0.00;SOR=0.818;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:266,0,226
2	127130299	rs112204418	C	CCA	759.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.30;RPA=1,2;RU=CA;SB=-3.141e+02;SOR=1.112;STR;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:797,45,0
2	127130431	rs6757298	A	T	302.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-1.971e+02;SOR=0.693;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:331,24,0
2	127447763	rs6709803	G	A	1591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-4.950e+02;SOR=2.256;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1620,123,0
2	127453664	rs1050967	A	C	2554.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.918;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.78;ReadPosRankSum=1.148;SB=-1.567e+03;SOR=0.378;VQSLOD=3.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,82:83:99:2583,193,0
2	127657221	rs3795873	C	T	761.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-3.260e+02;SOR=1.426;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:60:790,60,0
2	127808226	rs2071270	A	T	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.224;SB=-3.750e+02;SOR=0.617;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,29:65:99:944,0,1023
2	127808532	rs2043798	G	A	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=-1.160;SB=-1.030e+02;SOR=0.765;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:21:99:329,0,235
2	127808909	rs6745677	G	A	377.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-1.667;SB=-1.720e+02;SOR=0.287;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:406,0,498
2	127811042	rs76414720	G	A	609.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-0.363;SB=-3.570e+02;SOR=0.859;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,24:58:99:638,0,840
2	127816846	rs140171337	CTG	C	195.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.31;RPA=11,10;RU=TG;ReadPosRankSum=0.078;SB=-7.601e+01;SOR=0.495;STR;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:19:99:233,0,173
2	127818021	rs74895054	C	T	350.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-0.706;SB=-4.076e+01;SOR=0.481;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:379,0,141
2	127819777	rs61748157	C	T	950.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.933;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.8493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.248;SB=-4.550e+02;SOR=0.711;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,37:71:99:979,0,992
2	127821085	rs2071268	C	T	884.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.992;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.372;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=-0.914;SB=-1.890e+02;SOR=1.112;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,30:49:99:913,0,454
2	127821453	rs78935905	G	A	626.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.246;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-1.229;SB=-3.330e+02;SOR=0.897;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,24:45:99:655,0,571
2	127821499	rs72481904	T	C	421.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.171;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.622;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=2.591;SB=-2.480e+02;SOR=0.732;VQSLOD=6.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:28,18:46:99:450,0,839
2	127825968	rs934826	G	A	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-0.860;SB=-7.100e+01;SOR=0.250;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:250,0,271
2	127826632	rs67327804	A	G	1089.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.381;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=1.094;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-0.098;SB=-2.820e+02;SOR=1.064;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,38:71:99:1118,0,910
2	127834459	rs7562227	T	C	59.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.98;ReadPosRankSum=1.256;SB=0.00;SOR=0.148;VQSLOD=9.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:88:88,0,322
2	127927936	rs905657	T	A	838.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=0.854;SB=-5.660e+02;SOR=0.616;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,34:57:99:867,0,603
2	127944781	rs34169835	A	AC	1880.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.26;SB=-6.680e+02;SOR=1.445;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1918,120,0
2	127950904	rs885276	A	T	1232.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-1.145e+02;SOR=4.235;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1261,99,0
2	127951458	rs2089109	G	A	1314.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-6.590e+02;SOR=0.990;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1343,99,0
2	127951459	rs12476709	C	T	1404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-7.430e+02;SOR=0.990;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1433,105,0
2	128007686	rs6430936	A	C	412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.73;SB=-8.297e+01;SOR=2.494;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:441,33,0
2	128015367	rs4662718	C	T	695.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-7.597e+01;SOR=3.816;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:724,54,0
2	128016678	.	T	C	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.482;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.218;SB=-2.501e+01;SOR=1.136;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:232,0,372
2	128028792	rs4150499	T	C	1648.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-4.640e+02;SOR=2.256;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1677,126,0
2	128050134	rs4150402	T	C	1787.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-4.950e+02;SOR=2.387;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1816,135,0
2	128075624	.	C	CT	288.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.04;RPA=14,15;RU=T;ReadPosRankSum=0.478;SB=0.00;SOR=2.303;STR;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,14:18:44:326,0,44
2	128076022	rs9636237	T	C	417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-4.276e+01;SOR=3.611;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:446,33,0
2	128081682	rs12622436	C	A	1023.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-5.460e+02;SOR=0.760;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:81:1052,81,0
2	128175862	rs1799808	C	T	2978.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.24;SB=-6.690e+02;SOR=2.807;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3007,226,0
2	128175875	rs1799809	G	A	3065.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-1.000e+03;SOR=2.184;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3094,235,0
2	128176195	rs2854700	G	A	994.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.55;SB=-3.177e+01;SOR=5.211;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:1023,78,0
2	128177377	rs1158867	C	T	870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=-1.891e+02;SOR=2.584;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:899,69,0
2	128180872	rs5936	G	T	442.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-1.493e+02;SOR=1.445;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:471,36,0
2	128181028	rs1878844	A	G	760.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.08;SB=-4.010e+02;SOR=0.776;VQSLOD=4.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:60:789,60,0
2	128181234	rs2069922	GC	G	881.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.28;RPA=5,4;RU=C;SB=-2.650e+02;SOR=1.802;STR;VQSLOD=4.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:27:72:919,72,0
2	128227684	rs146159536	C	T	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-1.495;SB=0.00;SOR=0.368;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:224,0,381
2	128247640	rs334156	T	C	638.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=0.00;SOR=5.784;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:667,51,0
2	128247650	.	C	T	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.561;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.05;ReadPosRankSum=1.738;SB=0.00;SOR=1.244;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:333,0,198
2	128249441	rs334152	C	T	578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SB=0.00;SOR=5.549;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:607,45,0
2	128263476	rs334143	C	T	437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=0.00;SOR=5.421;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:466,39,0
2	128271958	rs10432384	C	T	1652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.938;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.428;SB=-8.470e+02;SOR=0.664;VQSLOD=8.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,61:119:99:1681,0,1507
2	128281469	rs2303947	C	T	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.789;SB=-7.100e+01;SOR=0.276;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:369,0,406
2	128324125	rs67660631	C	CT	756.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.62;SB=-5.176e+01;SOR=4.174;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:794,48,0
2	128331645	rs76746601	C	A	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.354;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.232;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-0.411;SB=-1.080e+02;SOR=0.110;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:465,0,742
2	128339758	rs17015424	C	G	1737.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-2.590e+02;SOR=3.352;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1766,132,0
2	128340043	rs74711761	G	A	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.811;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.954;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-0.668;SB=-4.310e+02;SOR=0.498;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,30:67:99:718,0,1004
2	128342547	rs4662741	G	A	1466.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-3.100e+02;SOR=2.885;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1495,111,0
2	128346228	rs11673952	A	C	1070.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=0.00;SOR=6.736;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1099,84,0
2	128350551	rs11678239	G	A	3211.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.46;SB=-9.090e+02;SOR=2.254;VQSLOD=4.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3240,235,0
2	128350578	.	T	TG	2440.73	PASS	AC=2;AF=1.00;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;RPA=2,3;RU=G;SB=-3.040e+02;SOR=3.804;STR;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:64:99:2478,178,0
2	128351346	rs7558838	T	C	709.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-8.297e+01;SOR=3.912;VQSLOD=6.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:60:738,60,0
2	128363530	.	G	GC	1683.73	PASS	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;RPA=2,3;RU=C;SB=-8.697e+01;SOR=5.235;STR;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:45:99:1721,126,0
2	128366272	rs17261971	G	A	1005.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.853;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.728;HaplotypeScore=2.6732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=-2.157;SB=-3.700e+02;SOR=0.345;VQSLOD=7.55;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,33:53:99:1034,0,498
2	128367092	rs777432	G	A	2051.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;DB;DP=188;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.188;SB=-1.188e+03;SOR=0.651;VQSLOD=6.77;culprit=DP	GT:AD:DP:GQ:PL	0/1:106,82:188:99:2080,0,2945
2	128367359	rs58719465	G	A	2370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=0.541;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=1.271;SB=-1.393e+03;SOR=0.619;VQSLOD=5.80;culprit=DP	GT:AD:DP:GQ:PL	0/1:95,91:186:99:2399,0,2607
2	128369896	rs777435	A	G	2806.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.624e+03;SOR=0.929;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2835,214,0
2	128377833	rs2248519	C	G	2065.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-7.340e+02;SOR=1.926;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2094,150,0
2	128377842	rs77159371	T	C	956.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.690;SB=-4.060e+02;SOR=0.586;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,37:68:99:985,0,788
2	128378136	rs2245727	A	C	371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=0.00;SOR=4.804;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:400,30,0
2	128379563	rs61744148	C	G	706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.155;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-0.051;SB=-3.990e+02;SOR=0.840;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,27:61:99:735,0,953
2	128381808	rs13422424	C	T	1684.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-8.300e+02;SOR=1.342;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1713,123,0
2	128382859	rs2245297	C	T	460.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=0.00;SOR=5.136;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:489,36,0
2	128383174	rs76503952	T	C	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=1.616;SB=-8.197e+01;SOR=0.105;VQSLOD=7.32;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,12:22:99:313,0,326
2	128385224	rs10164978	C	G	3393.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-1.667e+03;SOR=1.059;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3422,250,0
2	128385244	rs58961411	T	C	3223.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-1.713e+03;SOR=0.870;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3252,253,0
2	128389343	rs10208043	C	T	1627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-7.560e+02;SOR=1.329;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1656,120,0
2	128389422	rs10183797	G	C	744.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-7.997e+01;SOR=3.912;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:773,63,0
2	128392647	rs60245561	G	T	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.587;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=0.361;SB=-1.050e+02;SOR=0.776;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,15:26:99:441,0,331
2	128393261	rs2255178	T	C	865.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-2.111e+02;SOR=2.147;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:894,66,0
2	128393289	rs2255177	T	C	1180.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5768;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-4.360e+02;SOR=1.802;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:38:87:1209,87,0
2	128393800	rs2255161	T	C	1293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=2.426;HaplotypeScore=2.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=-0.597;SB=-6.410e+02;SOR=0.461;VQSLOD=7.58;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,53:125:99:1322,0,1975
2	128394320	rs200895755	G	C	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.511;SB=-3.200e+01;SOR=0.892;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:135,0,183
2	128394758	rs2255039	T	C	2417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-1.055e+03;SOR=1.270;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2446,181,0
2	128395138	rs75591580	G	A	688.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.924;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=1.995;SB=0.00;SOR=1.085;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,20:34:99:717,0,456
2	128396807	rs891515	A	G	292.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=6.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.812;SB=-1.155e+02;SOR=0.074;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:321,0,252
2	128400992	rs2244513	A	G	741.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.099;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.412;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.879;SB=-1.760e+02;SOR=0.426;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:770,0,816
2	128401091	rs2244507	A	G	2501.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-1.579e+03;SOR=0.740;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2530,190,0
2	128401300	rs34886973	C	T	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=-1.026;SB=0.00;SOR=1.085;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:201,0,130
2	128407499	rs2243805	G	A	777.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-1.981e+02;SOR=2.584;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:806,63,0
2	128407771	rs1820971	C	T	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=-0.689;SB=0.00;SOR=0.976;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:264,0,180
2	128408121	rs33922766	G	GC	1495.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;SB=-2.501e+02;SOR=3.056;VQSLOD=5.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:32:93:1533,93,0
2	128409337	rs35201354	G	C	601.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.889;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.182;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-0.146;SB=-1.630e+02;SOR=0.910;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,23:57:99:630,0,907
2	128409338	rs34415489	C	A	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.783;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.182;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-0.163;SB=-1.480e+02;SOR=0.910;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,23:57:99:628,0,850
2	128409419	rs13021001	A	G	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-0.563;SB=0.00;SOR=0.818;VQSLOD=10.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:260,0,240
2	128411934	rs6707277	A	G	877.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=0.00;SOR=6.439;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:906,69,0
2	128411950	rs6707282	A	G	1105.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-1.553e+02;SOR=3.611;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1134,93,0
2	128431188	rs6430942	A	G	420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-7.897e+01;SOR=2.833;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:449,36,0
2	128431397	rs7591197	A	G	115.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=11.376;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.76;ReadPosRankSum=1.314;SB=-1.373e-04;SOR=3.293;VQSLOD=4.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,6:42:99:144,0,975
2	128431476	rs6755288	G	T	444.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.328;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.74;ReadPosRankSum=1.116;SB=0.00;SOR=3.912;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,13:14:1:470,1,0
2	128474887	rs3771293	C	T	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.406;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=1.124;SB=-6.200e+01;SOR=1.204;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,12:27:99:320,0,465
2	128495645	rs6754215	G	A	2931.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-1.274e+03;SOR=1.414;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2960,214,0
2	128526579	.	T	TTAAA	1318.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.397;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.83;RPA=8,9;RU=TAAA;ReadPosRankSum=-0.833;SB=-1.180e+02;SOR=2.753;STR;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,24:42:21:1356,21,0
2	128608184	rs11556864	C	T	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.78;ReadPosRankSum=0.572;SB=-8.700e+01;SOR=0.818;VQSLOD=8.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,7:24:99:167,0,357
2	128610719	rs35614229	T	C	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.564;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=-0.716;SB=-2.130e+02;SOR=0.387;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,19:54:99:557,0,1147
2	128631916	rs13418973	T	G	774.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.746;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.255;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=0.143;SB=-1.850e+02;SOR=0.154;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,26:44:99:803,0,526
2	128699833	rs1370229	C	T	411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.053;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=1.472;SB=-2.100e+02;SOR=0.646;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:440,0,304
2	128708063	rs2461463	T	C	1803.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-1.007e+03;SOR=1.034;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1832,138,0
2	128744580	rs2948068	A	G	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-0.858;SB=-6.700e+01;SOR=0.892;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:269,0,310
2	128747023	rs17015839	A	G	166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-1.338;SB=0.00;SOR=0.399;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:195,0,278
2	128753854	rs1550174	T	C	2923.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4908;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-8.780e+02;SOR=2.135;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2952,214,0
2	128757804	rs10928793	C	T	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.995;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=-0.996;SB=-3.700e+02;SOR=0.544;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,24:59:99:660,0,1044
2	128757995	rs17015864	A	C	285.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.313;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.60;ReadPosRankSum=-1.922;SB=-6.300e+01;SOR=1.508;VQSLOD=6.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,14:51:99:314,0,996
2	128772310	rs35312230	C	T	746.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.784;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-0.442;SB=-9.000e+01;SOR=0.924;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,25:57:99:775,0,911
2	128849114	rs4476299	T	C	1109.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.74;SB=-6.370e+02;SOR=1.151;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:81:1138,81,0
2	128860835	rs7355336	A	G	2178.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-1.711e+02;SOR=4.443;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2207,166,0
2	128865835	rs66489005	T	TAAGA	658.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=0.00;SOR=4.804;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:30:696,30,0
2	128870808	rs4662775	T	C	1409.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-5.640e+02;SOR=1.814;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1438,102,0
2	128874061	rs10210598	G	A	781.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-1.215e+02;SOR=3.352;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:60:810,60,0
2	128878014	rs4662594	G	A	1425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-8.570e+02;SOR=0.823;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1454,105,0
2	128878667	rs6430990	T	C	539.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=0.00;SOR=5.421;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:568,42,0
2	128880899	rs4480941	T	A	1054.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.205e+02;SOR=3.407;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1083,81,0
2	128890878	.	T	TG	3452.73	PASS	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.42;RPA=1,2;RU=G;SB=-8.680e+02;SOR=2.272;STR;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:79:99:3490,232,0
2	128918538	rs6430995	C	T	54.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.98;ReadPosRankSum=0.000;SB=-3.300e+01;SOR=0.132;VQSLOD=6.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:83:83,0,292
2	128934400	rs2290111	T	C	1055.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.161;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=2.797;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.498;SB=-5.890e+02;SOR=0.838;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,40:86:99:1084,0,1123
2	128944424	rs744265	T	C	1457.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.719;HaplotypeScore=4.5129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=1.030;SB=-6.060e+02;SOR=0.471;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,56:112:99:1486,0,1555
2	129026457	rs35313751	G	A	851.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.851;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=1.160;SB=-4.680e+02;SOR=0.684;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,35:68:99:880,0,771
2	129276720	rs841094	T	C	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-0.473;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=-1.290;SB=-6.500e+01;SOR=0.693;VQSLOD=3.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:213,0,100
2	130253806	rs11684158	C	G	480.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.717;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=-1.206;SB=-1.070e+02;SOR=0.446;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,17:27:99:509,0,334
2	130254102	rs112375166	A	G	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.978;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.320;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=-1.006;SB=-2.020e+02;SOR=0.988;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,15:34:99:453,0,505
2	130254292	rs12475274	A	G	406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.65;SB=-1.115e+02;SOR=1.802;VQSLOD=4.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:435,33,0
2	130681407	rs7591781	G	C	405.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.081;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=2.556;SB=-9.732e-01;SOR=2.066;VQSLOD=5.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,13:30:99:434,0,533
2	130681447	rs11897873	G	A	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.55;ReadPosRankSum=0.257;SB=0.00;SOR=1.329;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:316,0,148
2	130683344	rs10928942	G	A	520.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-1.369;SB=-3.460e+02;SOR=0.619;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,23:40:99:549,0,453
2	130737578	rs4233601	G	A	75.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=47.70;MQ0=0;MQRankSum=-0.158;POSITIVE_TRAIN_SITE;QD=5.83;ReadPosRankSum=-1.446;SB=0.00;SOR=0.223;VQSLOD=3.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:104,0,263
2	130751121	rs4362508	A	T	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.691;SB=-6.100e+01;SOR=0.804;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:168,0,219
2	130751141	rs4493197	C	A	168.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.187;SB=-9.200e+01;SOR=0.368;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:197,0,203
2	130797930	rs6731161	G	A	298.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.90;SB=-1.613e+02;SOR=1.445;VQSLOD=4.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:327,24,0
2	130833159	rs200326162	G	A	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.964;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.04;MQ0=0;MQRankSum=-1.175;QD=14.67;ReadPosRankSum=-1.158;SB=-4.176e+01;SOR=0.317;VQSLOD=1.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:19:99:307,0,279
2	130895314	rs7556966	A	G	390.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-1.245e+02;SOR=1.981;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:419,30,0
2	130897218	rs13006246	T	C	1719.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=4.359;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.169;SB=-8.650e+02;SOR=1.119;VQSLOD=7.53;culprit=DP	GT:AD:DP:GQ:PL	0/1:59,68:127:99:1748,0,1642
2	130941065	rs6737226	T	C	936.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-4.300e+02;SOR=1.143;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:965,72,0
2	130948314	rs142246044	G	GT	171.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;DB;DP=50;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.82;RPA=12,13;RU=T;ReadPosRankSum=-0.237;SB=-3.900e+01;SOR=1.113;STR;VQSLOD=4.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,16:50:99:209,0,537
2	130949411	rs10208844	G	T	1071.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.0335;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=2;POSITIVE_TRAIN_SITE;QD=32.48;SB=-1.901e+02;SOR=3.056;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1100,84,0
2	130951548	rs1052319	G	A	3600.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-8.560e+02;SOR=2.380;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:95:99:3629,274,0
2	130951566	rs7340193	G	A	2763.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.55;SB=-8.590e+02;SOR=1.730;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2792,217,0
2	130960023	rs4663031	T	C	970.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.56;MQ0=0;MQRankSum=-4.092;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.400;SB=-6.020e+02;SOR=0.743;VQSLOD=1.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,39:69:99:999,0,841
2	131097247	rs55684765	G	A	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.991;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.60;ReadPosRankSum=-0.072;SB=-4.240e+02;SOR=0.486;VQSLOD=7.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,28:70:99:560,0,1041
2	131097253	rs56017827	G	C	529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.376;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=-0.302;SB=-2.980e+02;SOR=0.744;VQSLOD=8.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,26:66:99:558,0,1029
2	131100496	rs11542416	G	A	1664.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.449;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.705;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.348;SB=-8.560e+02;SOR=0.565;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,61:115:99:1693,0,1532
2	131100734	rs11542411	G	A	642.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.958;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=0.301;SB=-1.280e+02;SOR=1.528;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,22:41:99:671,0,643
2	131266530	rs10737928	C	A	1755.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.1823;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=2;POSITIVE_TRAIN_SITE;QD=28.78;SB=-9.280e+02;SOR=0.796;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1784,132,0
2	131414176	rs62165276	C	T	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7211;MLEAC=1;MLEAF=0.500;MQ=54.93;MQ0=0;MQRankSum=-2.382;QD=14.38;ReadPosRankSum=-0.992;SB=-1.960e+02;SOR=0.814;VQSLOD=1.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,22:39:99:589,0,508
2	131487673	rs272128	A	C	5040.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-3.078e+03;SOR=0.718;VQSLOD=5.52;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,158:158:99:5069,373,0
2	131520663	rs1905235	T	C	4529.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-2.333e+03;SOR=0.973;VQSLOD=5.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4558,334,0
2	131672271	rs6752724	T	C	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.31;SB=0.00;SOR=4.977;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
2	131672950	rs12464119	A	G	3529.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-1.806e+03;SOR=1.085;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3558,256,0
2	131673316	rs3739129	C	T	5652.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-3.182e+03;SOR=0.892;VQSLOD=4.38;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5681,418,0
2	131674285	rs3739127	A	G	2053.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=-4.890e+02;SOR=2.722;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2082,166,0
2	131769146	.	T	A	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.48;ReadPosRankSum=-0.879;SB=0.00;SOR=0.473;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:189,0,273
2	131769237	rs13023338	G	A	630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.735;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.529;HaplotypeScore=2.5184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=1.870;SB=-1.820e+02;SOR=0.404;VQSLOD=7.39;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,22:41:99:659,0,525
2	131797501	rs373292738	C	G	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.98;ReadPosRankSum=2.253;SB=0.00;SOR=1.270;VQSLOD=8.24;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:226,0,118
2	131798509	.	A	AC	222.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.13;RPA=5,6;RU=C;ReadPosRankSum=-0.709;SB=-4.076e+01;SOR=0.368;STR;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:260,0,141
2	131798517	rs114124268	C	A	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.0321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.91;ReadPosRankSum=-0.709;SB=-4.076e+01;SOR=0.368;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:248,0,163
2	131798737	rs2241460	C	G	1104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.842;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=5.464;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=1.101;SB=-3.960e+02;SOR=0.276;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,32:64:99:1133,0,964
2	131799563	rs2241461	C	T	788.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=1.191;SB=-3.020e+02;SOR=0.661;VQSLOD=9.71;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:34,30:65:99:817,0,989
2	131800943	rs2288189	G	C	588.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.006;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=5.362;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.728;SB=-5.300e+01;SOR=1.650;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,21:53:99:617,0,955
2	131802045	.	C	T	771.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.275;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.769;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-1.357;SB=-3.410e+02;SOR=1.292;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,31:58:99:800,0,639
2	131805984	rs11541220	G	T	538.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=-0.440;SB=0.00;SOR=0.976;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,17:30:99:567,0,421
2	131810267	rs3814392	T	G	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=1.489;SB=-1.766e+00;SOR=1.112;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:133,0,167
2	131812738	rs3814391	C	T	495.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.820;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.394;SB=-1.200e+02;SOR=0.756;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,20:39:99:524,0,567
2	131829560	rs67372203	A	ACACC	2033.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.783;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=0.832;POSITIVE_TRAIN_SITE;QD=32.45;ReadPosRankSum=0.164;SB=-7.610e+02;SOR=0.749;VQSLOD=3.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,29:49:99:2071,0,1195
2	131829634	rs192637230	A	G	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=0.055;SB=-1.360e+02;SOR=0.671;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:419,0,345
2	131888424	rs3762570	C	G	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=-0.752;SB=0.00;SOR=0.283;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:244,0,201
2	131948232	rs9710794	G	A	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=-0.063;SB=-1.300e+02;SOR=0.307;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:272,0,199
2	131948248	rs9711323	A	T	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=-1.221;SB=-1.000e+02;SOR=0.307;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:271,0,161
2	131951231	rs9677819	T	A	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.433;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-0.628;SB=-3.100e+01;SOR=1.911;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:249,0,164
2	131953329	rs1834273	C	T	350.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=0.280;SB=-2.800e+02;SOR=0.368;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,16:19:75:379,0,75
2	131953403	rs1834272	T	C	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=7.404;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.71;ReadPosRankSum=0.875;SB=-1.765e+00;SOR=4.615;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:46:333,0,46
2	131984532	rs202117277	C	G	84.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.23;MQ0=1;MQRankSum=-3.220;QD=4.99;ReadPosRankSum=2.721;SB=0.00;SOR=0.223;VQSLOD=0.460;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:113,0,389
2	132059813	rs4850099	G	A	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.38;MQ0=0;MQRankSum=-0.545;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=0.248;SB=-9.700e+01;SOR=1.179;VQSLOD=3.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:214,0,100
2	132110463	rs12477219	G	C	118.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.888;SB=-9.600e+01;SOR=0.446;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:147,0,104
2	132120501	.	C	CT	595.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-0.713;QD=11.91;RPA=7,8;RU=T;ReadPosRankSum=1.349;SB=-1.769e+00;SOR=1.673;STR;VQSLOD=0.954;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,25:50:99:633,0,553
2	132200568	rs62176150	C	T	1600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.351;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=-1.804;SB=-9.120e+02;SOR=0.674;VQSLOD=2.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,59:92:99:1629,0,927
2	132201395	rs146766088	T	A	1207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-0.683;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-0.042;SB=-4.570e+02;SOR=0.791;VQSLOD=2.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,43:94:99:1236,0,1357
2	132201942	rs72859867	T	C	2225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.544;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=2.062;HaplotypeScore=3.8306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-0.575;SB=-1.055e+03;SOR=0.520;VQSLOD=6.91;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,80:159:99:2254,0,2140
2	132241502	rs61122959	TA	T	100.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=1.073;QD=2.65;RPA=16,15;RU=A;ReadPosRankSum=-0.816;SB=-3.900e+01;SOR=0.536;STR;VQSLOD=1.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,13:39:99:138,0,474
2	132248584	rs10182785	T	C	1718.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-7.540e+02;SOR=1.270;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1747,126,0
2	132249372	rs6706952	C	T	862.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=11;POSITIVE_TRAIN_SITE;QD=23.32;SB=-1.145e+02;SOR=3.611;VQSLOD=3.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:5,32:37:66:891,66,0
2	132349222	rs6711357	A	C	455.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.78;SB=-1.115e+02;SOR=2.147;VQSLOD=4.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:484,36,0
2	132349224	rs6751575	G	C	460.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.60;SB=-1.115e+02;SOR=2.147;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:489,36,0
2	132349413	rs6751827	G	A	946.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.69;SB=-5.150e+02;SOR=1.179;VQSLOD=4.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:72:975,72,0
2	132354365	rs2136463	G	C	1986.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-9.690e+02;SOR=1.410;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2015,147,0
2	132354479	rs6704592	C	A	2583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-1.433e+03;SOR=0.824;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:80:99:2612,199,0
2	132354586	rs6710546	A	G	3292.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-1.536e+03;SOR=1.044;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3321,244,0
2	132354807	rs6705059	C	T	1539.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-3.240e+02;SOR=2.985;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1568,120,0
2	132354853	rs6705083	C	G	907.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.08;SB=-3.876e+01;SOR=5.058;VQSLOD=2.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:936,69,0
2	132359034	rs6430896	A	G	820.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=-5.280e+02;SOR=0.836;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:60:849,60,0
2	132359063	rs60230063	A	G	902.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-5.770e+02;SOR=0.756;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:66:931,66,0
2	132359089	rs60809087	C	A	960.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-5.110e+02;SOR=1.112;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:989,72,0
2	132366994	rs1979997	A	G	883.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.62;SB=-5.310e+02;SOR=1.112;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:66:912,66,0
2	132367062	.	G	GT	366.73	PASS	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=26.20;RPA=11,12;RU=T;SB=-1.223e+02;SOR=1.765;STR;VQSLOD=4.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:18:42:404,42,0
2	132369178	rs6752868	T	C	2429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-1.285e+03;SOR=0.887;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2458,184,0
2	132369332	rs6743830	C	T	1135.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.42;SB=-1.245e+02;SOR=4.112;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:90:1164,90,0
2	132384137	rs9287537	A	C	522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.635;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.873;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.488;SB=-3.230e+02;SOR=0.293;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,20:37:99:551,0,402
2	132384339	.	C	T	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.452;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.04;ReadPosRankSum=0.891;SB=-2.550e+02;SOR=1.609;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,25:45:99:705,0,525
2	132384682	rs12692060	T	C	964.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=-5.400e+02;SOR=0.760;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:78:993,78,0
2	132384683	rs12692061	T	G	938.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-4.970e+02;SOR=0.693;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:967,75,0
2	132491544	rs7599401	C	G	709.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-1.981e+02;SOR=2.200;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:738,54,0
2	132494182	rs11690978	G	C	417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.11;SB=-2.840e+02;SOR=0.941;VQSLOD=5.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:446,33,0
2	132517068	rs4850122	A	G	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-2.401e+02;SOR=0.693;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:412,30,0
2	132517294	rs10184807	A	G	529.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7331;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=4;POSITIVE_TRAIN_SITE;QD=20.38;SB=-3.590e+02;SOR=1.085;VQSLOD=3.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:39:558,39,0
2	132592403	rs9711401	T	C	107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=0;MQRankSum=-1.812;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=0.000;SB=-6.800e+01;SOR=0.527;VQSLOD=2.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:136,0,172
2	132594079	rs9798100	C	A	146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-0.405;SB=-8.800e+01;SOR=0.223;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:93:175,0,93
2	132905626	rs200465566	A	G	73.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.65;MQ0=0;MQRankSum=-3.173;QD=3.88;ReadPosRankSum=0.307;SB=-2.304e+01;SOR=0.193;VQSLOD=0.507;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:102,0,414
2	133011947	rs62164985	C	G	264.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=26.48;SB=-1.681e+02;SOR=0.693;VQSLOD=4.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:293,24,0
2	133011953	rs62164986	T	C	280.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=28.08;SB=-1.901e+02;SOR=0.693;VQSLOD=4.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:309,24,0
2	133011994	rs62164987	T	C	273.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=22.82;SB=-1.533e+02;SOR=1.445;VQSLOD=3.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:302,24,0
2	133012007	rs62164988	T	C	258.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=23.53;SB=-1.115e+02;SOR=1.802;VQSLOD=3.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:287,21,0
2	133012019	rs79993289	A	C	242.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=24.28;SB=-7.397e+01;SOR=2.303;VQSLOD=2.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:271,24,0
2	133012716	rs5002053	A	G	253.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=25.38;SB=-1.423e+02;SOR=0.693;VQSLOD=3.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:282,21,0
2	133014602	rs75245503	G	C	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.279;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.98;ReadPosRankSum=1.490;SB=-6.200e+01;SOR=0.551;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:238,0,199
2	133014612	rs74853538	A	C	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.04;ReadPosRankSum=-0.249;SB=-1.010e+02;SOR=0.631;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:386,0,227
2	133014619	rs78327226	C	T	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.996;SB=-2.501e+01;SOR=0.846;VQSLOD=7.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:99:135,0,517
2	133014640	rs78867621	C	T	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.365;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-2.272;SB=-1.905e+01;SOR=1.785;VQSLOD=4.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,7:23:99:185,0,496
2	133014651	rs147164632	A	AC	481.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.94;RPA=2,3;RU=C;ReadPosRankSum=-0.441;SB=-1.480e+02;SOR=0.948;STR;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:519,0,309
2	133014657	rs113237573	G	A	153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-1.461;SB=-5.100e+01;SOR=0.859;VQSLOD=7.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,7:24:99:182,0,523
2	133014678	rs72869462	A	G	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.528;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-0.237;SB=-2.470e+02;SOR=0.586;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,16:26:99:453,0,269
2	133014703	rs72869464	T	C	462.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=0.905;QD=17.14;ReadPosRankSum=1.037;SB=-2.200e+02;SOR=0.765;VQSLOD=1.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,16:27:99:491,0,294
2	133014721	rs72869465	T	C	449.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=0.844;QD=16.66;ReadPosRankSum=0.176;SB=-2.800e+02;SOR=0.804;VQSLOD=2.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,17:27:99:478,0,295
2	133014751	rs75204936	T	C	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.43;MQ0=0;MQRankSum=1.417;QD=6.99;ReadPosRankSum=-1.104;SB=-1.240e+02;SOR=0.653;VQSLOD=1.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,9:25:99:203,0,400
2	133014776	rs72869466	C	T	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9980;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=1.793;QD=6.57;ReadPosRankSum=0.463;SB=-3.200e+01;SOR=0.527;VQSLOD=1.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:99:153,0,408
2	133014777	.	A	G	121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9980;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=1.793;QD=6.41;ReadPosRankSum=0.510;SB=-2.901e+01;SOR=0.527;VQSLOD=0.711;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:99:150,0,428
2	133014786	rs72869468	G	A	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9980;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=-0.478;QD=5.99;ReadPosRankSum=1.018;SB=-2.701e+01;SOR=0.527;VQSLOD=1.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:99:142,0,444
2	133014805	.	C	T	81.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=-0.433;QD=5.11;ReadPosRankSum=0.485;SB=-2.601e+01;SOR=0.260;VQSLOD=1.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:110,0,359
2	133014822	rs75678647	C	T	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9985;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=-0.539;QD=5.42;ReadPosRankSum=-0.964;SB=-2.601e+01;SOR=0.446;VQSLOD=1.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:115,0,309
2	133014827	rs138609152	C	CA	102.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=1.618;QD=6.42;RPA=2,3;RU=A;ReadPosRankSum=0.340;SB=-2.402e+01;SOR=0.446;STR;VQSLOD=1.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:140,0,407
2	133014832	rs76727711	C	T	88.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-1.102;SB=-3.500e+01;SOR=0.223;VQSLOD=8.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:117,0,326
2	133014841	rs76832220	G	A	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.78;ReadPosRankSum=0.785;SB=-9.732e-01;SOR=1.179;VQSLOD=7.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:99:115,0,332
2	133014847	rs56200609	A	G	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.98;ReadPosRankSum=-1.876;SB=0.00;SOR=1.445;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:288,0,113
2	133014856	rs79113146	G	T	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-0.361;SB=0.00;SOR=0.330;VQSLOD=8.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:127,0,236
2	133015204	rs6755836	A	C	394.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=26.32;SB=-2.061e+02;SOR=1.473;VQSLOD=3.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:423,30,0
2	133015212	rs62165013	A	G	384.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=25.65;SB=-2.061e+02;SOR=1.473;VQSLOD=3.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:413,30,0
2	133015235	.	C	CT	538.73	PASS	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=33.67;RPA=3,4;RU=T;SB=-1.781e+02;SOR=1.609;STR;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:17:48:576,48,0
2	133015260	.	T	TCC	567.73	PASS	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=27.12;RPA=4,6;RU=C;SB=-1.873e+02;SOR=1.609;STR;VQSLOD=3.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:17:39:605,39,0
2	133015267	rs76483000	A	C	472.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=28.58;SB=-1.603e+02;SOR=1.609;VQSLOD=4.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:501,39,0
2	133015274	.	T	C	484.77	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=34.63;SB=-1.991e+02;SOR=1.329;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:513,39,0
2	133015278	.	C	T	485.77	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=32.38;SB=-2.311e+02;SOR=1.112;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:514,39,0
2	133015283	.	G	C	492.77	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=30.80;SB=-2.870e+02;SOR=0.941;VQSLOD=3.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:521,39,0
2	133015302	rs75692539	T	C	439.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=23.15;SB=-2.960e+02;SOR=0.793;VQSLOD=2.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:36:468,36,0
2	133015303	rs79256679	C	G	452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=23.83;SB=-3.190e+02;SOR=0.793;VQSLOD=2.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:36:481,36,0
2	133015328	.	G	GC	467.73	PASS	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=33.53;RPA=2,3;RU=C;SB=-2.471e+02;SOR=0.693;STR;VQSLOD=4.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:505,36,0
2	133015339	.	C	G	315.78	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=24.29;SB=-2.001e+02;SOR=0.836;VQSLOD=3.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:344,27,0
2	133015346	.	A	C	242.80	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=24.28;SB=-1.025e+02;SOR=1.609;VQSLOD=3.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:271,21,0
2	133015348	.	T	C	197.84	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=19.78;SB=-1.025e+02;SOR=1.609;VQSLOD=3.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:226,18,0
2	133015354	.	T	C	225.80	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=22.58;SB=-1.025e+02;SOR=1.609;VQSLOD=3.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:254,21,0
2	133015360	.	A	C	242.80	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=24.28;SB=-1.015e+02;SOR=1.609;VQSLOD=3.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:271,21,0
2	133015365	.	T	C	225.80	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=22.58;SB=-1.025e+02;SOR=1.609;VQSLOD=3.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:254,21,0
2	133015370	.	C	G	238.80	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=23.88;SB=-9.751e+01;SOR=1.609;VQSLOD=3.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:267,21,0
2	133016335	rs2315221	T	C	498.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=2;QD=26.25;SB=-9.051e+01;SOR=2.712;VQSLOD=4.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:527,42,0
2	133016344	rs113885144	T	C	548.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.744;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=2;MQRankSum=-0.234;QD=21.92;ReadPosRankSum=-1.798;SB=-2.420e+02;SOR=0.693;VQSLOD=1.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,24:25:11:576,11,0
2	133016365	rs112484182	A	G	539.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.078;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9976;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=2;MQRankSum=-0.934;QD=19.99;ReadPosRankSum=-0.055;SB=-2.291e+02;SOR=1.426;VQSLOD=2.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,25:27:6:567,6,0
2	133016368	rs112857050	T	C	556.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9976;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=2;MQRankSum=-0.934;QD=20.62;ReadPosRankSum=-0.055;SB=-2.161e+02;SOR=1.426;VQSLOD=2.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,25:27:6:584,6,0
2	133016378	.	A	C	587.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.908;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=-0.870;QD=24.47;ReadPosRankSum=1.675;SB=-2.331e+02;SOR=1.329;VQSLOD=2.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,22:24:9:615,9,0
2	133016379	.	C	A	587.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.770;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=-0.870;QD=24.47;ReadPosRankSum=1.730;SB=-2.231e+02;SOR=1.329;VQSLOD=1.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,22:24:9:615,9,0
2	133016383	rs112080228	A	G	587.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.091;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=-0.870;QD=24.47;ReadPosRankSum=2.065;SB=-2.291e+02;SOR=1.329;VQSLOD=2.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,22:24:9:615,9,0
2	133016387	rs112327829	G	C	598.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.061;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=-0.870;QD=24.93;ReadPosRankSum=2.065;SB=-2.071e+02;SOR=1.329;VQSLOD=2.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,22:24:9:626,9,0
2	133016402	rs79422997	C	A	569.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.936;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.787;QD=22.79;ReadPosRankSum=1.939;SB=-3.048e+02;SOR=0.963;VQSLOD=2.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,23:25:6:597,6,0
2	133016453	rs75254493	C	T	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=54.40;MQ0=0;MQRankSum=-1.530;QD=7.08;ReadPosRankSum=0.095;SB=-9.300e+01;SOR=1.048;VQSLOD=1.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,9:23:99:191,0,379
2	133016464	rs199960963	A	G	631.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9154;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=30.08;SB=-2.401e+02;SOR=1.828;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:660,48,0
2	133016466	rs201305763	A	T	576.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=28.84;SB=-2.431e+02;SOR=1.721;VQSLOD=4.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:21:45:605,45,0
2	133016468	rs113740533	A	C	594.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.015;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.946;QD=28.32;ReadPosRankSum=-0.248;SB=-2.401e+02;SOR=0.765;VQSLOD=2.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,20:21:45:623,45,0
2	133016495	rs4518013	T	G	551.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=30.65;SB=-1.951e+02;SOR=1.863;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:580,42,0
2	133016520	rs74645575	A	G	513.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=32.11;SB=-1.483e+02;SOR=2.049;VQSLOD=5.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:542,39,0
2	133016614	rs200414721	A	T	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9970;MLEAC=1;MLEAF=0.500;MQ=47.95;MQ0=0;MQRankSum=-0.334;QD=17.78;ReadPosRankSum=0.411;SB=-7.100e+01;SOR=0.527;VQSLOD=2.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:89:206,0,89
2	133016615	rs201589139	A	T	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9970;MLEAC=1;MLEAF=0.500;MQ=47.95;MQ0=0;MQRankSum=-0.334;QD=18.08;ReadPosRankSum=0.303;SB=-6.800e+01;SOR=0.527;VQSLOD=2.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:98:209,0,98
2	133016720	rs28653146	C	T	981.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.192;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.370;QD=29.73;ReadPosRankSum=1.552;SB=-2.401e+02;SOR=0.929;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,31:33:11:1009,11,0
2	133016731	rs477475	T	G	1180.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=31.07;SB=-3.700e+02;SOR=2.303;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1209,93,0
2	133016744	rs371014364	T	C	1071.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.424;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9990;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.158;QD=28.97;ReadPosRankSum=0.202;SB=-4.120e+02;SOR=0.483;VQSLOD=4.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,35:37:13:1100,13,0
2	133016745	.	G	A	1038.41	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.653;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9986;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.194;QD=27.33;ReadPosRankSum=0.131;SB=-4.140e+02;SOR=0.420;VQSLOD=4.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,36:38:8:1066,8,0
2	133016774	rs4306759	T	C	1768.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9983;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=33.37;SB=-8.660e+02;SOR=1.179;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1797,129,0
2	133016819	rs62165020	T	C	2029.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.239;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9983;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.236;QD=31.72;ReadPosRankSum=1.462;SB=-9.590e+02;SOR=0.402;VQSLOD=1.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,63:65:99:2058,120,0
2	133016853	rs7419481	T	C	2888.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.430;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.610;QD=32.83;ReadPosRankSum=-0.197;SB=-1.073e+03;SOR=0.629;VQSLOD=1.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2917,184,0
2	133016859	rs62165021	A	C	2885.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9982;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.660;QD=32.79;ReadPosRankSum=-0.709;SB=-1.263e+03;SOR=0.542;VQSLOD=1.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2914,177,0
2	133016872	rs62165022	A	G	2908.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.305;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9941;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.777;QD=32.32;ReadPosRankSum=-1.271;SB=-1.359e+03;SOR=0.495;VQSLOD=1.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2937,183,0
2	133016912	rs62165023	A	G	2610.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.7845;MLEAC=1;MLEAF=0.500;MQ=54.93;MQ0=0;MQRankSum=3.300;QD=21.40;ReadPosRankSum=0.060;SB=-1.411e+03;SOR=0.800;VQSLOD=0.434;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,100:122:99:2639,0,259
2	133016919	rs62165024	T	C	2706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9977;MLEAC=1;MLEAF=0.500;MQ=54.88;MQ0=0;MQRankSum=3.262;QD=22.37;ReadPosRankSum=0.017;SB=-1.330e+03;SOR=0.697;VQSLOD=0.584;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,99:121:99:2735,0,288
2	133016945	rs62165025	T	G	2695.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=77.7726;MLEAC=1;MLEAF=0.500;MQ=54.30;MQ0=0;MQRankSum=1.672;QD=23.65;ReadPosRankSum=0.624;SB=-1.678e+03;SOR=0.751;VQSLOD=0.808;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,103:114:64:2724,0,64
2	133016947	.	A	C	2662.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.381;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=77.7726;MLEAC=1;MLEAF=0.500;MQ=54.24;MQ0=0;MQRankSum=1.000;QD=26.36;ReadPosRankSum=0.465;SB=-1.594e+03;SOR=0.682;VQSLOD=1.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,92:113:44:2691,0,44
2	133016948	rs199947224	G	A	2810.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.178;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=77.7726;MLEAC=1;MLEAF=0.500;MQ=54.24;MQ0=0;MQRankSum=0.583;QD=24.87;ReadPosRankSum=0.509;SB=-1.718e+03;SOR=0.700;VQSLOD=1.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,104:113:33:2839,0,33
2	133016996	rs113408139	T	C	2463.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.039;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=710.5776;MLEAC=1;MLEAF=0.500;MQ=55.49;MQ0=0;MQRankSum=2.931;QD=26.49;ReadPosRankSum=1.330;SB=-1.288e+03;SOR=0.876;VQSLOD=1.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,81:93:99:2492,0,156
2	133017021	rs62165027	T	C	3749.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.522;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.6879;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.521;QD=30.99;ReadPosRankSum=-0.153;SB=-1.914e+03;SOR=0.936;VQSLOD=0.154;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,117:121:99:3778,169,0
2	133017034	rs56125207	A	G	3700.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=25.3939;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=30.09;SB=-1.870e+03;SOR=0.986;VQSLOD=4.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3729,277,0
2	133017065	rs78035153	T	G	2759.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.574;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9970;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.668;QD=29.36;ReadPosRankSum=-0.594;SB=-1.382e+03;SOR=1.280;VQSLOD=1.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,92:94:99:2788,163,0
2	133017067	rs75734619	C	T	2495.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.280;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9970;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.945;QD=28.04;ReadPosRankSum=0.008;SB=-1.074e+03;SOR=0.738;VQSLOD=1.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:6,83:89:78:2524,78,0
2	133017081	rs6430141	T	A	2563.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9316;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=30.52;SB=-1.150e+03;SOR=1.501;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2592,193,0
2	133017082	rs150910679	T	C	2244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.659;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9319;MLEAC=1;MLEAF=0.500;MQ=58.37;MQ0=0;MQRankSum=2.260;QD=26.41;ReadPosRankSum=0.619;SB=-9.418e+02;SOR=0.370;VQSLOD=1.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,76:85:54:2273,0,54
2	133017097	rs74727834	T	C	2476.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7989;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=33.02;SB=-1.030e+03;SOR=1.578;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:76:99:2505,181,0
2	133017098	rs35521175	G	A	2341.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.7964;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=30.81;SB=-9.200e+02;SOR=1.609;VQSLOD=3.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2370,175,0
2	133017119	rs62165032	T	C	2095.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8580;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=28.71;SB=-9.600e+02;SOR=1.609;VQSLOD=3.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2124,163,0
2	133017179	rs62165036	T	G	1169.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.498;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9991;MLEAC=1;MLEAF=0.500;MQ=56.44;MQ0=0;MQRankSum=1.422;QD=29.24;ReadPosRankSum=-0.231;SB=-4.010e+02;SOR=0.340;VQSLOD=2.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,37:43:20:1177,20,0
2	133017210	rs62165037	A	G	711.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.76;MQ0=0;MQRankSum=-1.327;QD=26.34;ReadPosRankSum=-1.716;SB=-2.440e+02;SOR=0.487;VQSLOD=2.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,25:27:11:739,0,11
2	133017214	rs62165038	A	G	633.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.590;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.26;MQ0=0;MQRankSum=-1.557;QD=26.41;ReadPosRankSum=-1.307;SB=-1.791e+02;SOR=0.693;VQSLOD=2.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,22:24:22:662,0,22
2	133017230	rs62165039	T	C	758.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=32.99;SB=-1.523e+02;SOR=2.400;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:787,57,0
2	133017235	rs80192462	A	C	732.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=31.86;SB=-1.553e+02;SOR=2.400;VQSLOD=5.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:761,57,0
2	133017281	rs76411623	T	C	317.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9694;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=26.48;SB=-1.343e+02;SOR=1.022;VQSLOD=3.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:346,27,0
2	133018728	rs78041780	A	T	315.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8660;MLEAC=1;MLEAF=0.500;MQ=47.82;MQ0=0;MQRankSum=-1.606;QD=18.53;ReadPosRankSum=-2.185;SB=-1.680e+02;SOR=0.818;VQSLOD=0.793;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,15:17:12:343,0,12
2	133018747	rs76472477	T	C	507.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.84;MQ0=0;MQRankSum=-1.543;QD=24.18;ReadPosRankSum=-2.187;SB=-2.561e+02;SOR=0.793;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,19:21:0:533,0,0
2	133018764	rs78645236	A	G	588.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-1.503;QD=23.55;ReadPosRankSum=-2.207;SB=-3.416e+02;SOR=0.776;VQSLOD=2.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,23:25:6:616,6,0
2	133018770	.	T	C	686.77	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=27.47;SB=-4.120e+02;SOR=0.770;VQSLOD=3.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:51:715,51,0
2	133018777	rs79219152	A	G	589.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=-1.538;QD=22.68;ReadPosRankSum=-2.213;SB=-3.630e+02;SOR=0.859;VQSLOD=1.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,24:26:6:617,6,0
2	133018785	.	T	C	682.77	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=26.26;SB=-4.400e+02;SOR=0.846;VQSLOD=2.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:51:711,51,0
2	133018820	rs63749412	T	C	751.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-1.170;QD=27.85;ReadPosRankSum=1.254;SB=-4.042e+02;SOR=0.941;VQSLOD=2.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,25:27:18:780,18,0
2	133018824	rs62165053	T	C	712.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.020;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.125;QD=27.42;ReadPosRankSum=1.401;SB=-4.042e+02;SOR=0.859;VQSLOD=2.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,24:26:18:741,18,0
2	133018831	rs62165054	G	C	729.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.717;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.742;QD=28.07;ReadPosRankSum=0.937;SB=-4.406e+02;SOR=0.330;VQSLOD=2.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,25:26:29:758,29,0
2	133018837	rs62165055	T	C	797.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=31.91;SB=-4.540e+02;SOR=0.941;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:826,60,0
2	133018840	.	T	C	829.77	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=30.73;SB=-4.740e+02;SOR=0.922;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:858,63,0
2	133018886	rs1058145	T	C	767.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=30.71;SB=-4.490e+02;SOR=0.941;VQSLOD=4.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:57:796,57,0
2	133018891	.	A	T	720.77	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=30.03;SB=-4.120e+02;SOR=1.051;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:749,54,0
2	133018911	rs62165058	C	T	627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=28.53;SB=-3.700e+02;SOR=1.085;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:656,48,0
2	133018959	rs76179303	C	A	535.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=29.76;SB=-2.261e+02;SOR=1.493;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:564,42,0
2	133018964	rs78898857	A	C	540.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=31.81;SB=-2.001e+02;SOR=1.739;VQSLOD=4.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:42:569,42,0
2	133018967	rs75244748	A	G	549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=32.34;SB=-1.851e+02;SOR=1.739;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:42:578,42,0
2	133018978	rs77772472	A	G	510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=34.05;SB=-1.245e+02;SOR=2.448;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:539,39,0
2	133018988	rs74935609	A	G	415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=34.65;SB=-7.497e+01;SOR=2.670;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:444,33,0
2	133019583	rs3208658	C	G	763.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6824;MLEAC=1;MLEAF=0.500;MQ=49.77;MQ0=0;MQRankSum=-1.960;QD=23.14;ReadPosRankSum=-2.207;SB=-4.370e+02;SOR=0.906;VQSLOD=2.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,29:33:87:792,0,87
2	133019604	rs62165961	T	G	875.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=50.47;MQ0=0;MQRankSum=-2.450;QD=23.05;ReadPosRankSum=0.108;SB=-5.150e+02;SOR=0.521;VQSLOD=2.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,33:38:79:904,0,79
2	133019609	rs3208657	G	C	887.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.790;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=50.46;MQ0=0;MQRankSum=-2.488;QD=22.76;ReadPosRankSum=0.420;SB=-5.550e+02;SOR=0.446;VQSLOD=1.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,34:39:79:916,0,79
2	133019636	rs77304763	T	C	897.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=51.57;MQ0=0;MQRankSum=-2.013;QD=22.44;ReadPosRankSum=1.759;SB=-5.240e+02;SOR=1.061;VQSLOD=1.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,36:40:39:926,0,39
2	133019642	rs75575905	T	C	795.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=52.67;MQ0=0;MQRankSum=-2.370;QD=22.10;ReadPosRankSum=2.083;SB=-4.480e+02;SOR=0.711;VQSLOD=1.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,31:36:84:824,0,84
2	133019646	rs112618513	T	C	786.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.062;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=53.06;MQ0=0;MQRankSum=-2.279;QD=23.14;ReadPosRankSum=2.433;SB=-3.920e+02;SOR=0.880;VQSLOD=1.80;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,29:34:80:815,0,80
2	133019683	rs368854475	T	C	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.9931;MLEAC=1;MLEAF=0.500;MQ=50.06;MQ0=0;MQRankSum=-1.861;QD=2.74;ReadPosRankSum=1.643;SB=-1.709e+01;SOR=1.214;VQSLOD=0.584;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,5:24:94:94,0,634
2	133019703	.	T	G	930.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.869;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9979;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=-1.887;QD=31.02;ReadPosRankSum=0.877;SB=-4.555e+02;SOR=0.997;VQSLOD=0.568;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,28:30:7:958,7,0
2	133019712	rs372137431	A	G	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.887;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.8619;MLEAC=1;MLEAF=0.500;MQ=49.57;MQ0=0;MQRankSum=-3.224;QD=5.61;ReadPosRankSum=-0.022;SB=-1.170e+02;SOR=0.709;VQSLOD=1.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,9:31:99:202,0,755
2	133019768	rs373214673	T	G	569.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.825;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.9944;MLEAC=1;MLEAF=0.500;MQ=48.33;MQ0=0;MQRankSum=-2.914;QD=18.99;ReadPosRankSum=0.318;SB=-3.000e+02;SOR=0.693;VQSLOD=1.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,18:30:99:598,0,228
2	133019774	rs112455843	T	G	623.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.653;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.9941;MLEAC=1;MLEAF=0.500;MQ=47.58;MQ0=0;MQRankSum=-2.759;QD=20.12;ReadPosRankSum=-0.269;SB=-3.420e+02;SOR=0.551;VQSLOD=2.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,20:31:99:652,0,218
2	133019781	rs112877637	G	A	608.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.306;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.9955;MLEAC=1;MLEAF=0.500;MQ=47.58;MQ0=0;MQRankSum=-2.759;QD=19.64;ReadPosRankSum=-0.911;SB=-3.380e+02;SOR=0.551;VQSLOD=1.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,20:31:99:637,0,228
2	133019793	rs201153258	A	G	615.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.817;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.58;MQ0=0;MQRankSum=-2.759;QD=19.86;ReadPosRankSum=-0.806;SB=-3.430e+02;SOR=0.551;VQSLOD=1.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,20:31:99:644,0,224
2	133019795	rs199750508	T	C	619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.365;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.58;MQ0=0;MQRankSum=-2.759;QD=19.99;ReadPosRankSum=-0.848;SB=-3.480e+02;SOR=0.551;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,20:31:99:648,0,223
2	133019802	rs200693325	C	A	568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.898;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=47.58;MQ0=0;MQRankSum=-2.759;QD=18.35;ReadPosRankSum=-1.199;SB=-3.170e+02;SOR=0.551;VQSLOD=1.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,20:31:99:597,0,229
2	133019808	rs77439806	C	G	116.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=48.02;MQ0=0;MQRankSum=1.613;QD=3.65;ReadPosRankSum=1.595;SB=-1.170e+02;SOR=0.829;VQSLOD=1.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,9:32:99:145,0,735
2	133019822	rs376996232	A	G	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9955;MLEAC=1;MLEAF=0.500;MQ=49.46;MQ0=0;MQRankSum=-2.945;QD=15.68;ReadPosRankSum=2.156;SB=-2.090e+02;SOR=0.693;VQSLOD=1.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,13:26:99:436,0,280
2	133019824	rs370088473	A	C	396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9955;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=0;MQRankSum=-2.759;QD=15.87;ReadPosRankSum=2.425;SB=-1.860e+02;SOR=0.836;VQSLOD=1.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,13:25:99:425,0,274
2	133019825	rs375322252	A	G	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9953;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=0;MQRankSum=-2.759;QD=16.07;ReadPosRankSum=2.614;SB=-2.070e+02;SOR=0.836;VQSLOD=1.13;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,13:25:99:430,0,276
2	133019827	rs377588429	T	C	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.395;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9953;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=0;MQRankSum=-2.759;QD=17.03;ReadPosRankSum=2.588;SB=-2.110e+02;SOR=0.836;VQSLOD=1.26;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,13:25:99:454,0,273
2	133019831	rs79463135	T	G	414.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.438;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9963;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=0;MQRankSum=-2.759;QD=16.59;ReadPosRankSum=2.672;SB=-2.040e+02;SOR=0.836;VQSLOD=1.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,13:25:99:443,0,270
2	133019862	rs112170664	G	A	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.524;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9972;MLEAC=1;MLEAF=0.500;MQ=46.90;MQ0=0;MQRankSum=-1.197;QD=6.44;ReadPosRankSum=-0.786;SB=-1.340e+02;SOR=0.560;VQSLOD=1.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,10:36:99:260,0,743
2	133019878	rs79135039	T	C	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.597;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9937;MLEAC=1;MLEAF=0.500;MQ=48.94;MQ0=0;MQRankSum=-1.987;QD=21.26;ReadPosRankSum=-0.833;SB=-1.950e+02;SOR=0.976;VQSLOD=0.914;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,14:18:78:411,0,78
2	133019879	rs142946666	G	A	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9937;MLEAC=1;MLEAF=0.500;MQ=48.49;MQ0=0;MQRankSum=-1.902;QD=20.22;ReadPosRankSum=-0.658;SB=-1.610e+02;SOR=1.179;VQSLOD=2.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,13:17:79:372,0,79
2	133019881	rs370583468	T	C	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.8604;MLEAC=1;MLEAF=0.500;MQ=48.49;MQ0=0;MQRankSum=-1.044;QD=13.16;ReadPosRankSum=0.406;SB=-1.230e+02;SOR=0.534;VQSLOD=2.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,11:17:99:252,0,149
2	133019884	rs149765934	A	C	303.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8630;MLEAC=1;MLEAF=0.500;MQ=48.49;MQ0=0;MQRankSum=-1.485;QD=17.87;ReadPosRankSum=0.390;SB=-1.620e+02;SOR=0.693;VQSLOD=2.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,12:17:99:332,0,123
2	133019886	rs2311279	T	C	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.8604;MLEAC=1;MLEAF=0.500;MQ=48.49;MQ0=0;MQRankSum=-1.635;QD=15.34;ReadPosRankSum=0.726;SB=-1.130e+02;SOR=0.892;VQSLOD=2.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,12:17:99:289,0,126
2	133019890	.	G	GAAA	563.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.20;MQ0=0;MQRankSum=-1.315;QD=31.19;ReadPosRankSum=0.414;SB=-2.470e+02;SOR=0.560;VQSLOD=1.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,13:16:99:601,0,150
2	133019901	rs71997229	T	TTG	899.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.82;MQ0=0;MQRankSum=-1.463;QD=29.75;ReadPosRankSum=0.231;SB=-2.970e+02;SOR=0.656;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,20:23:99:937,0,101
2	133019913	rs111896746	T	C	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9966;MLEAC=1;MLEAF=0.500;MQ=50.39;MQ0=0;MQRankSum=-0.973;QD=16.55;ReadPosRankSum=1.482;SB=-2.170e+02;SOR=1.022;VQSLOD=2.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,19:27:99:475,0,156
2	133020005	rs80278536	G	C	540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=48.72;MQ0=0;MQRankSum=-1.126;QD=21.63;ReadPosRankSum=-0.128;SB=-2.140e+02;SOR=0.892;VQSLOD=2.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,19:26:99:569,0,112
2	133020014	rs76667242	A	C	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=48.72;MQ0=0;MQRankSum=-1.256;QD=19.26;ReadPosRankSum=0.087;SB=-2.020e+02;SOR=0.693;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,19:26:99:529,0,149
2	133020018	rs113413176	T	G	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9465;MLEAC=1;MLEAF=0.500;MQ=48.40;MQ0=0;MQRankSum=-1.618;QD=18.99;ReadPosRankSum=0.401;SB=-1.580e+02;SOR=0.693;VQSLOD=2.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,16:23:99:465,0,151
2	133020026	rs112650155	A	G	411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9463;MLEAC=1;MLEAF=0.500;MQ=48.94;MQ0=0;MQRankSum=-1.416;QD=17.90;ReadPosRankSum=0.245;SB=-1.750e+02;SOR=0.990;VQSLOD=2.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,17:24:99:440,0,117
2	133020040	rs192325340	A	G	368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.289;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9994;MLEAC=1;MLEAF=0.500;MQ=47.81;MQ0=0;MQRankSum=-1.920;QD=16.76;ReadPosRankSum=0.353;SB=-1.750e+02;SOR=0.610;VQSLOD=2.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,15:22:99:397,0,154
2	133020042	rs75034381	T	G	351.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.639;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=48.77;MQ0=0;MQRankSum=-1.584;QD=17.59;ReadPosRankSum=0.866;SB=-1.750e+02;SOR=0.693;VQSLOD=2.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,14:21:99:380,0,121
2	133020061	rs77748634	A	G	343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9987;MLEAC=1;MLEAF=0.500;MQ=47.32;MQ0=0;MQRankSum=-1.200;QD=19.10;ReadPosRankSum=-0.986;SB=-1.580e+02;SOR=0.818;VQSLOD=2.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,13:18:90:372,0,90
2	133020082	rs35316167	T	G	337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.516;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.33;MQ0=0;MQRankSum=-0.066;QD=22.52;ReadPosRankSum=-0.327;SB=-1.500e+02;SOR=0.495;VQSLOD=2.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:84:366,0,84
2	133020142	rs201807849	A	C	36.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=56.64;MQ0=0;MQRankSum=-1.400;QD=3.06;ReadPosRankSum=-0.817;SB=-6.100e+01;SOR=0.368;VQSLOD=1.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:65:65,0,219
2	133020151	.	T	C	268.80	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=26.88;SB=-1.653e+02;SOR=1.085;VQSLOD=4.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:297,21,0
2	133020229	rs76224417	C	G	243.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.10;MQ0=0;MQRankSum=-0.126;QD=24.39;ReadPosRankSum=-0.126;SB=-1.653e+02;SOR=0.307;VQSLOD=3.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,9:10:17:272,0,17
2	133020242	rs77325990	A	G	277.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.111;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-0.162;QD=25.19;ReadPosRankSum=-1.265;SB=-1.653e+02;SOR=0.399;VQSLOD=0.855;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,10:11:11:305,0,11
2	133020249	rs74485887	T	C	257.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.15;MQ0=0;MQRankSum=-0.385;QD=25.79;ReadPosRankSum=-1.036;SB=-1.463e+02;SOR=0.307;VQSLOD=1.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,9:10:14:286,0,14
2	133020270	rs112358250	T	C	285.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=0;MQRankSum=-1.265;QD=25.93;ReadPosRankSum=-1.109;SB=-1.750e+02;SOR=0.223;VQSLOD=1.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,10:11:10:313,0,10
2	133020480	rs139548311	C	CT	390.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;QD=26.55;SB=-9.997e+01;SOR=2.093;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:9:27:428,27,0
2	133020657	rs74659814	A	G	51.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.615;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.8572;MLEAC=1;MLEAF=0.500;MQ=41.73;MQ0=0;MQRankSum=-2.255;QD=2.72;ReadPosRankSum=-0.307;SB=-2.901e+01;SOR=0.124;VQSLOD=1.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:80:80,0,335
2	133020675	rs80191268	C	T	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6745;MLEAC=1;MLEAF=0.500;MQ=47.00;MQ0=0;MQRankSum=-2.165;QD=19.45;ReadPosRankSum=1.086;SB=-2.540e+02;SOR=0.693;VQSLOD=2.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,23:26:31:534,0,31
2	133020681	rs75721902	T	A	559.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.792;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9956;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-1.714;QD=21.53;ReadPosRankSum=-0.241;SB=-2.221e+02;SOR=1.270;VQSLOD=0.558;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,24:26:6:587,6,0
2	133020682	rs79749243	A	G	521.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.792;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7295;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-1.714;QD=20.06;ReadPosRankSum=-0.241;SB=-2.401e+02;SOR=1.270;VQSLOD=1.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,24:26:3:548,3,0
2	133020724	.	C	T	831.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.664;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9984;MLEAC=1;MLEAF=0.500;MQ=52.21;MQ0=1;MQRankSum=-1.479;QD=22.46;ReadPosRankSum=0.000;SB=-5.288e+02;SOR=0.448;VQSLOD=1.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,34:37:10:859,0,10
2	133020763	rs2871712	T	C	115.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.254;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9308;MLEAC=1;MLEAF=0.500;MQ=54.18;MQ0=1;MQRankSum=0.557;QD=2.97;ReadPosRankSum=1.225;SB=-7.900e+01;SOR=0.614;VQSLOD=1.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,7:39:99:144,0,679
2	133020831	rs78830067	G	A	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9978;MLEAC=1;MLEAF=0.500;MQ=56.06;MQ0=2;MQRankSum=-0.616;QD=18.51;ReadPosRankSum=1.210;SB=-2.090e+02;SOR=0.551;VQSLOD=2.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,19:23:99:454,0,110
2	133020834	rs4071887	T	C	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.458;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9990;MLEAC=1;MLEAF=0.500;MQ=55.87;MQ0=2;MQRankSum=1.387;QD=7.85;ReadPosRankSum=1.064;SB=-1.030e+02;SOR=0.787;VQSLOD=1.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,9:22:99:201,0,305
2	133023065	rs74733724	A	G	250.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9987;MLEAC=1;MLEAF=0.500;MQ=41.40;MQ0=0;MQRankSum=-1.645;QD=25.00;ReadPosRankSum=-1.036;SB=0.00;SOR=1.802;VQSLOD=1.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,9:10:12:278,0,12
2	133023070	rs78880715	A	G	282.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.05;MQ0=0;MQRankSum=-1.282;QD=28.23;ReadPosRankSum=-0.674;SB=-2.777e+01;SOR=1.802;VQSLOD=1.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,9:10:9:310,0,9
2	133023089	rs75265419	A	T	296.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=48.91;MQ0=0;MQRankSum=-1.569;QD=22.84;ReadPosRankSum=0.495;SB=-8.901e+01;SOR=1.802;VQSLOD=1.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,11:13:15:325,0,15
2	133023213	rs9711678	G	C	609.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.180;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.215;QD=27.72;ReadPosRankSum=1.501;SB=-3.725e+02;SOR=0.260;VQSLOD=1.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,21:22:14:638,14,0
2	133023245	rs77916488	T	G	607.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=28.94;SB=-3.570e+02;SOR=0.990;VQSLOD=4.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:636,45,0
2	133023246	rs74728908	T	C	585.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=27.89;SB=-3.670e+02;SOR=0.990;VQSLOD=3.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:614,45,0
2	133023283	.	A	ACGGT	1048.73	PASS	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=33.32;SB=-2.753e+02;SOR=1.911;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:1086,45,0
2	133025584	rs28729781	A	G	271.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.00;MQ0=0;MQRankSum=0.481;QD=24.65;ReadPosRankSum=0.794;SB=-6.997e+01;SOR=1.179;VQSLOD=2.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,10:11:10:299,0,10
2	133025598	rs74463961	T	C	334.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.76;MQ0=0;MQRankSum=0.985;QD=25.74;ReadPosRankSum=-0.401;SB=-1.423e+02;SOR=0.593;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,12:13:7:362,0,7
2	133025599	rs78310556	T	C	359.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.76;MQ0=0;QD=29.98;SB=-1.423e+02;SOR=1.445;VQSLOD=4.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:31:382,31,0
2	133025613	.	A	G	451.77	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=30.12;SB=-1.523e+02;SOR=1.473;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:480,36,0
2	133025645	rs62166688	A	C	455.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.9973;MLEAC=1;MLEAF=0.500;MQ=55.42;MQ0=0;MQRankSum=2.092;QD=25.31;ReadPosRankSum=-0.352;SB=-2.292e+02;SOR=0.941;VQSLOD=2.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,16:18:3:482,0,3
2	133025652	.	C	CAGCG	1116.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.005;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.42;MQ0=0;MQRankSum=2.092;QD=29.77;ReadPosRankSum=-0.282;SB=-5.400e+02;SOR=0.941;VQSLOD=2.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,16:18:98:1154,0,98
2	133025660	.	G	A	509.77	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9990;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=29.99;SB=-2.750e+02;SOR=1.061;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:538,39,0
2	133025662	.	A	G	396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.078;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9990;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=0;MQRankSum=1.720;QD=23.34;ReadPosRankSum=0.316;SB=-2.471e+02;SOR=0.551;VQSLOD=1.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,14:17:41:425,0,41
2	133025663	rs78819548	A	C	480.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9990;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=0;QD=30.05;SB=-2.800e+02;SOR=0.941;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:17:36:505,36,0
2	133025665	rs112480958	C	T	391.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9990;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=0;MQRankSum=1.720;QD=23.05;ReadPosRankSum=0.825;SB=-2.151e+02;SOR=0.551;VQSLOD=2.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,14:17:46:420,0,46
2	133025703	rs142543946	A	AG	548.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;DB;DP=23;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.500;MQ=54.96;MQ0=0;MQRankSum=0.000;QD=24.94;RPA=3,4;RU=G;ReadPosRankSum=-0.112;SB=-2.890e+02;SOR=0.105;STR;VQSLOD=4.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,16:23:99:586,0,170
2	133025732	rs4381828	T	C	600.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.044;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8653;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.852;QD=26.13;ReadPosRankSum=0.077;SB=-3.590e+02;SOR=0.399;VQSLOD=2.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,22:23:14:629,14,0
2	133025752	rs4245833	A	G	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=52.94;MQ0=0;MQRankSum=1.288;QD=26.28;ReadPosRankSum=1.467;SB=-1.670e+02;SOR=1.473;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,15:17:33:475,0,33
2	133025774	.	A	G	456.77	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9970;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=31.37;SB=-1.603e+02;SOR=1.609;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:485,36,0
2	133026705	rs79139395	T	G	239.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=57.29;MQ0=0;MQRankSum=-0.447;QD=21.80;ReadPosRankSum=-0.689;SB=-1.500e+02;SOR=0.892;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,9:11:21:268,0,21
2	133026715	.	A	G	443.77	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=29.58;SB=-2.401e+02;SOR=1.112;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:472,36,0
2	133026731	rs62166709	A	C	411.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.15;MQ0=0;MQRankSum=-0.414;QD=25.73;ReadPosRankSum=0.399;SB=-1.660e+02;SOR=1.329;VQSLOD=2.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,14:16:6:439,0,6
2	133026734	.	C	G	521.77	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=30.69;SB=-2.840e+02;SOR=1.061;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:550,39,0
2	133026767	rs62166712	T	C	470.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.099;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.000;QD=24.78;ReadPosRankSum=-0.640;SB=-2.894e+02;SOR=0.223;VQSLOD=7.21;culprit=SOR	GT:AD:DP:GQ:PL	1/1:1,18:19:2:497,2,0
2	133026796	rs74790123	A	G	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQ0=0;MQRankSum=1.271;QD=8.13;ReadPosRankSum=0.636;SB=-1.180e+02;SOR=0.743;VQSLOD=1.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,9:22:99:207,0,329
2	133026828	rs62166713	T	C	527.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=26.39;SB=-3.710e+02;SOR=0.892;VQSLOD=4.26;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,20:20:39:556,39,0
2	133026841	rs62166714	T	C	524.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=26.24;SB=-3.520e+02;SOR=0.892;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:39:553,39,0
2	133026846	rs6722442	A	G	474.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=24.99;SB=-3.340e+02;SOR=0.793;VQSLOD=3.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:36:503,36,0
2	133026862	rs79299714	T	G	422.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=30.20;SB=-1.851e+02;SOR=1.329;VQSLOD=5.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:451,33,0
2	133026868	rs76094994	T	C	408.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=29.20;SB=-1.991e+02;SOR=1.329;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:437,33,0
2	133026871	rs78845762	A	G	423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=32.60;SB=-1.483e+02;SOR=1.609;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:452,33,0
2	133026881	.	T	C	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=56.13;MQ0=0;MQRankSum=0.767;QD=17.37;ReadPosRankSum=-0.854;SB=-7.000e+01;SOR=1.402;VQSLOD=2.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:254,0,132
2	133026897	rs76185520	A	G	375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=34.16;SB=-1.205e+02;SOR=1.802;VQSLOD=4.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:404,30,0
2	133028308	rs368602385	G	A	63.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.7975;MLEAC=1;MLEAF=0.500;MQ=46.47;MQ0=0;MQRankSum=0.805;QD=6.38;ReadPosRankSum=2.881;SB=-6.800e+01;SOR=0.693;VQSLOD=0.328;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,5:10:92:92,0,135
2	133028310	rs201713946	C	G	68.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.7975;MLEAC=1;MLEAF=0.500;MQ=46.47;MQ0=0;MQRankSum=-0.303;QD=6.88;ReadPosRankSum=-2.450;SB=-6.300e+01;SOR=0.307;VQSLOD=1.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:97:97,0,133
2	133028316	.	GAGAGAA	G	227.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.29;MQ0=0;MQRankSum=0.446;QD=8.13;ReadPosRankSum=3.588;SB=-1.310e+02;SOR=0.412;VQSLOD=0.556;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:265,0,421
2	133028327	.	A	G	51.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=49.9399;MLEAC=1;MLEAF=0.500;MQ=47.00;MQ0=0;MQRankSum=0.682;QD=3.45;ReadPosRankSum=3.149;SB=-6.500e+01;SOR=0.368;VQSLOD=0.910;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:80:80,0,286
2	133028328	rs192466569	G	A	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.9967;MLEAC=1;MLEAF=0.500;MQ=41.98;MQ0=0;MQRankSum=1.829;QD=10.84;ReadPosRankSum=-0.154;SB=-9.732e-01;SOR=0.368;VQSLOD=2.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:21:83:245,0,83
2	133028332	rs369918216	G	C	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=30.3632;MLEAC=1;MLEAF=0.500;MQ=41.01;MQ0=0;MQRankSum=0.451;QD=3.13;ReadPosRankSum=-0.227;SB=-2.601e+01;SOR=0.412;VQSLOD=1.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:22:94:94,0,276
2	133028473	rs201118323	C	G	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8839;MLEAC=1;MLEAF=0.500;MQ=44.78;MQ0=0;MQRankSum=2.038;QD=8.36;ReadPosRankSum=-1.360;SB=-5.900e+01;SOR=0.883;VQSLOD=0.879;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:162,0,133
2	133029168	rs113840954	C	G	429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=1;QD=30.70;SB=-3.477e+01;SOR=3.767;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:458,36,0
2	133029177	rs62640101	T	A	443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=1;QD=29.58;SB=-7.597e+01;SOR=2.985;VQSLOD=5.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:472,36,0
2	133029185	rs62640103	G	A	444.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=1;QD=29.65;SB=-7.797e+01;SOR=2.985;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:473,36,0
2	133029207	rs62640104	G	C	479.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=1;QD=26.65;SB=-2.041e+02;SOR=1.739;VQSLOD=4.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:36:508,36,0
2	133029223	.	GAGAC	G	691.73	PASS	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=32.06;SB=-2.711e+02;SOR=1.022;VQSLOD=5.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:14:36:729,36,0
2	133029231	rs62640802	G	C	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9977;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=1.224;QD=9.71;ReadPosRankSum=1.063;SB=-3.500e+01;SOR=0.495;VQSLOD=1.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:12:99:135,0,173
2	133029232	.	A	G	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9977;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=-1.457;QD=11.40;ReadPosRankSum=-0.464;SB=-2.801e+01;SOR=1.329;VQSLOD=1.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:165,0,175
2	133029233	rs202117502	G	A	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9977;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=0.947;QD=8.65;ReadPosRankSum=0.536;SB=-6.800e+01;SOR=0.760;VQSLOD=0.785;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:132,0,175
2	133029235	rs62640803	C	G	68.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9977;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=0.947;QD=5.73;ReadPosRankSum=0.156;SB=-2.901e+01;SOR=0.760;VQSLOD=1.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:97:97,0,212
2	133029235	.	CAG	C	506.73	PASS	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=30.05;RPA=3,2;RU=AG;SB=-2.271e+02;SOR=1.022;STR;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:544,36,0
2	133029239	rs373836481	G	A	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9977;MLEAC=1;MLEAF=0.500;MQ=52.96;MQ0=0;MQRankSum=-1.649;QD=13.14;ReadPosRankSum=0.902;SB=-6.000e+01;SOR=1.022;VQSLOD=2.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:199,0,215
2	133029253	rs113398720	G	A	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9987;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=-1.160;QD=14.45;ReadPosRankSum=0.222;SB=-1.360e+02;SOR=0.495;VQSLOD=1.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:245,0,211
2	133029263	.	G	GAGACAGACAGAC	809.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.81;MQ0=0;MQRankSum=-1.691;QD=16.87;RPA=3,6;RU=AGAC;ReadPosRankSum=0.084;SB=-4.210e+02;SOR=0.307;STR;VQSLOD=1.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:14:99:847,0,723
2	133029319	rs62167466	G	A	393.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=44.5259;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=1.421;QD=21.88;ReadPosRankSum=0.841;SB=-1.450e+02;SOR=0.495;VQSLOD=2.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,13:18:99:422,0,118
2	133029321	rs200632488	CAGAGAGAAACAGAT	C	1589.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=0.159;QD=21.29;ReadPosRankSum=0.670;SB=-5.920e+02;SOR=0.593;VQSLOD=1.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,12:18:99:1627,0,119
2	133029339	rs112743763	A	C	471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=31.8948;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=33.70;SB=-2.031e+02;SOR=1.329;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:500,36,0
2	133029350	rs62167468	T	C	385.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.901;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-0.972;QD=24.11;ReadPosRankSum=-1.015;SB=-1.880e+02;SOR=0.693;VQSLOD=2.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,13:16:44:414,0,44
2	133029365	rs62167469	G	A	383.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=0;MQRankSum=-0.763;QD=25.55;ReadPosRankSum=-1.110;SB=-1.721e+02;SOR=1.179;VQSLOD=2.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,13:15:9:411,0,9
2	133029599	rs75296055	G	A	312.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=1;QD=28.43;SB=-1.045e+02;SOR=1.609;VQSLOD=4.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:341,27,0
2	133029621	rs78595531	A	G	438.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9964;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=29.25;SB=-2.301e+02;SOR=1.112;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:467,36,0
2	133029631	rs150913804	A	C	453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=30.25;SB=-2.361e+02;SOR=0.818;VQSLOD=3.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:482,36,0
2	133029633	rs200092012	T	C	445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=29.72;SB=-2.151e+02;SOR=0.818;VQSLOD=4.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:474,36,0
2	133029640	rs77543387	G	C	441.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=29.45;SB=-2.151e+02;SOR=0.818;VQSLOD=4.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:470,36,0
2	133029641	rs80270208	A	G	432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=28.85;SB=-2.301e+02;SOR=0.818;VQSLOD=4.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:461,36,0
2	133029652	rs62167472	C	G	437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=23.04;SB=-2.960e+02;SOR=0.793;VQSLOD=2.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:33:466,33,0
2	133029717	rs11685751	C	A	395.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=23.28;SB=-2.391e+02;SOR=1.061;VQSLOD=2.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:30:424,30,0
2	133030451	rs77388364	G	C	254.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=23.16;SB=-1.135e+02;SOR=1.270;VQSLOD=3.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:283,21,0
2	133030455	rs76893917	A	G	221.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.17;SB=-8.297e+01;SOR=1.270;VQSLOD=2.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:18:250,18,0
2	133030458	rs75553718	C	G	300.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=27.34;SB=-1.155e+02;SOR=1.270;VQSLOD=3.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:329,24,0
2	133030463	rs62167511	C	T	211.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.26;SB=-8.097e+01;SOR=1.270;VQSLOD=3.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:18:240,18,0
2	133030479	rs62167512	T	A	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=29.52;SB=-1.135e+02;SOR=2.147;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:412,33,0
2	133030518	rs151155269	A	ACCC	969.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=29.84;RPA=1,4;RU=C;SB=-3.551e+02;SOR=1.244;STR;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:1007,48,0
2	133030532	rs201110497	T	C	422.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=26.42;SB=-2.471e+02;SOR=1.244;VQSLOD=3.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:451,33,0
2	133030538	rs75519934	C	T	504.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=26.57;SB=-3.090e+02;SOR=1.022;VQSLOD=4.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:533,39,0
2	133030546	rs78591446	T	C	502.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=26.46;SB=-3.200e+02;SOR=1.022;VQSLOD=4.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:531,39,0
2	133030548	rs75346338	T	C	492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=27.38;SB=-2.960e+02;SOR=0.914;VQSLOD=2.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:521,39,0
2	133030579	rs62167514	C	G	515.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.79;SB=-3.900e+02;SOR=0.693;VQSLOD=3.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:39:544,39,0
2	133030586	rs62167515	A	G	493.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=27.43;SB=-3.150e+02;SOR=0.914;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:522,39,0
2	133030600	rs77611192	G	C	430.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.92;SB=-2.890e+02;SOR=0.941;VQSLOD=4.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:459,33,0
2	133030626	rs62167516	T	C	445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=26.22;SB=-2.351e+02;SOR=0.804;VQSLOD=4.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:36:474,36,0
2	133030630	rs75610372	T	C	472.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9990;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=29.55;SB=-2.061e+02;SOR=0.941;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:501,36,0
2	133030631	.	G	T	424.77	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9990;MLEAC=1;MLEAF=0.500;MQ=54.69;MQ0=0;QD=37.48;SB=-1.205e+02;SOR=1.445;VQSLOD=4.42;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,12:16:30:404,30,0
2	133030649	rs28609487	A	G	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6631;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=1;QD=25.18;SB=-1.653e+02;SOR=0.976;VQSLOD=2.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:406,30,0
2	133030770	.	GGAGAAAGA	G	822.74	PASS	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=34.28;SB=-3.823e+02;SOR=0.892;VQSLOD=4.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:10:27:860,27,0
2	133030786	rs112376321	T	G	343.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=34.38;SB=-1.633e+02;SOR=1.085;VQSLOD=4.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:372,27,0
2	133030794	rs75978258	C	G	343.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=34.38;SB=-1.633e+02;SOR=1.085;VQSLOD=5.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:372,27,0
2	133030805	rs62167522	C	G	343.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=31.25;SB=-2.041e+02;SOR=0.859;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:372,27,0
2	133030832	rs62167523	A	G	341.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=28.48;SB=-1.971e+02;SOR=1.022;VQSLOD=4.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:370,27,0
2	133030837	rs62167524	T	C	309.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.791e+02;SOR=1.022;VQSLOD=4.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:338,24,0
2	133030851	rs79116609	G	C	311.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.851e+02;SOR=1.022;VQSLOD=3.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:340,24,0
2	133030865	rs76638566	C	G	281.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-2.401e+02;SOR=0.836;VQSLOD=2.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:21:310,21,0
2	133030867	rs78459980	T	C	281.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-2.211e+02;SOR=0.836;VQSLOD=2.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:21:310,21,0
2	133030875	rs73957398	C	G	280.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-2.441e+02;SOR=0.836;VQSLOD=1.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:21:309,21,0
2	133030896	rs77244886	C	G	268.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-1.653e+02;SOR=1.085;VQSLOD=3.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:297,21,0
2	133030900	rs77389828	C	T	259.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.493e+02;SOR=1.085;VQSLOD=4.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:288,21,0
2	133031179	.	C	A	425.77	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=32.75;SB=-1.473e+02;SOR=1.609;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:454,36,0
2	133031181	rs79092614	A	G	436.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=33.60;SB=-1.513e+02;SOR=1.609;VQSLOD=4.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:465,36,0
2	133031189	rs77636252	C	G	453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=32.41;SB=-2.061e+02;SOR=1.329;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:482,36,0
2	133031194	rs78465009	G	A	441.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=31.55;SB=-2.001e+02;SOR=1.329;VQSLOD=3.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:470,36,0
2	133031196	.	A	G	482.77	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=32.18;SB=-2.001e+02;SOR=1.473;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:511,39,0
2	133031207	rs62167530	A	G	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.11;MQ0=0;MQRankSum=0.356;QD=18.99;ReadPosRankSum=-0.181;SB=-1.780e+02;SOR=0.693;VQSLOD=2.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,14:20:99:408,0,173
2	133031214	rs62167531	T	C	692.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=31.49;SB=-3.570e+02;SOR=1.085;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:721,54,0
2	133031216	rs2315357	T	C	672.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=30.58;SB=-3.330e+02;SOR=1.085;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:701,54,0
2	133031229	rs62167532	T	C	895.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=31.99;SB=-4.540e+02;SOR=1.179;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:924,66,0
2	133031270	rs76450402	GT	G	1507.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=31.01;SB=-6.850e+02;SOR=1.085;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1545,102,0
2	133031286	rs80089146	C	A	1170.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=30.81;SB=-5.190e+02;SOR=1.432;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,37:38:87:1199,87,0
2	133031287	rs78178387	A	G	1197.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=31.52;SB=-5.700e+02;SOR=1.329;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1226,87,0
2	133031302	rs62167533	T	C	1102.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=31.51;SB=-5.080e+02;SOR=1.148;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1131,84,0
2	133031311	rs62163760	A	G	1132.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=32.36;SB=-5.110e+02;SOR=1.308;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1161,87,0
2	133031340	rs62163761	A	G	1032.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=31.30;SB=-5.100e+02;SOR=1.022;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1061,81,0
2	133031355	rs76467362	C	T	1017.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=29.93;SB=-6.130e+02;SOR=0.811;VQSLOD=4.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1046,78,0
2	133031370	rs72987834	G	C	852.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=27.51;SB=-5.490e+02;SOR=0.892;VQSLOD=4.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:66:881,66,0
2	133031388	rs76601725	A	G	764.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=29.41;SB=-4.390e+02;SOR=1.022;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:793,57,0
2	133031393	rs79060741	T	C	716.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=28.67;SB=-4.370e+02;SOR=0.941;VQSLOD=4.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:745,54,0
2	133031409	rs112102523	A	C	679.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=29.56;SB=-3.710e+02;SOR=1.179;VQSLOD=4.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:708,54,0
2	133031412	rs111685066	G	A	630.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=28.67;SB=-3.460e+02;SOR=1.085;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:659,48,0
2	133031420	rs111702339	T	C	607.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=31.99;SB=-2.261e+02;SOR=1.609;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:636,51,0
2	133031423	rs113010400	C	T	523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=34.92;SB=-1.205e+02;SOR=2.448;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:552,42,0
2	133031425	rs113205740	A	G	535.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=27.13;SB=-1.115e+02;SOR=2.448;VQSLOD=3.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:564,42,0
2	133031440	rs28595615	G	C	621.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=31.09;SB=-1.593e+02;SOR=2.531;VQSLOD=4.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:650,51,0
2	133031458	rs78839649	A	G	756.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=32.90;SB=-1.741e+02;SOR=2.400;VQSLOD=4.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:785,57,0
2	133031476	rs78361810	T	C	713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=28.31;SB=-1.653e+02;SOR=2.303;VQSLOD=4.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:742,54,0
2	133031477	rs77257584	G	A	707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=34.34;SB=-1.593e+02;SOR=2.303;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:736,54,0
2	133031487	rs182036214	T	C	677.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=34.19;SB=-2.800e+02;SOR=1.292;VQSLOD=4.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:706,57,0
2	133031496	rs201811968	A	G	628.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=28.53;SB=-2.580e+02;SOR=1.061;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:657,51,0
2	133031504	rs113555517	G	A	618.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=28.40;SB=-2.800e+02;SOR=0.941;VQSLOD=4.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:647,48,0
2	133031511	rs112727606	T	C	510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=32.58;SB=-2.590e+02;SOR=0.693;VQSLOD=3.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:539,42,0
2	133031533	rs80105084	C	A	561.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=27.15;SB=-2.700e+02;SOR=0.818;VQSLOD=4.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:590,45,0
2	133031543	rs76264384	T	A	569.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=35.49;SB=-2.880e+02;SOR=0.818;VQSLOD=3.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:598,45,0
2	133031573	rs74337786	T	C	496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=31.05;SB=-2.221e+02;SOR=1.244;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:525,39,0
2	133031590	rs75457885	A	C	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=29.37;SB=-1.653e+02;SOR=1.609;VQSLOD=4.55;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:30:410,30,0
2	133031598	rs78704680	A	T	372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=28.67;SB=-1.603e+02;SOR=1.609;VQSLOD=4.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:30:401,30,0
2	133031611	.	C	CGG	472.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.652;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.518;QD=31.71;ReadPosRankSum=1.750;SB=-1.983e+02;SOR=0.495;VQSLOD=1.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,11:12:32:510,32,0
2	133031704	rs76623179	C	G	561.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=31.41;SB=-2.580e+02;SOR=0.941;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:590,45,0
2	133031707	rs79752276	G	C	522.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=34.85;SB=-2.890e+02;SOR=0.818;VQSLOD=4.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:551,42,0
2	133031718	rs77600405	A	G	542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=30.18;SB=-2.840e+02;SOR=0.818;VQSLOD=4.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:571,42,0
2	133031733	rs77486388	T	G	500.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=33.38;SB=-2.790e+02;SOR=0.818;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:529,39,0
2	133031747	rs75074651	T	C	437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=33.67;SB=-1.841e+02;SOR=1.179;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:466,36,0
2	133031768	rs78152028	A	G	356.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=32.43;SB=-2.001e+02;SOR=0.859;VQSLOD=4.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:385,30,0
2	133031772	rs74538995	T	C	323.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=32.38;SB=-1.851e+02;SOR=0.693;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:352,27,0
2	133031799	rs76125916	C	G	387.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=29.52;SB=-2.041e+02;SOR=0.859;VQSLOD=4.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:416,30,0
2	133031813	rs77767586	T	G	307.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=30.78;SB=-1.205e+02;SOR=1.609;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:336,24,0
2	133031823	rs112572034	T	C	286.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=28.68;SB=-1.245e+02;SOR=1.609;VQSLOD=4.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:315,24,0
2	133031828	rs370411458	T	C	308.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=30.88;SB=-1.225e+02;SOR=1.609;VQSLOD=4.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:337,24,0
2	133031841	rs113778800	T	G	296.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;MQRankSum=0.385;QD=29.68;ReadPosRankSum=1.645;SB=-8.097e+01;SOR=1.022;VQSLOD=1.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,9:10:24:325,24,0
2	133031850	rs79552452	A	G	332.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=33.28;SB=-8.297e+01;SOR=2.303;VQSLOD=3.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:361,27,0
2	133031864	rs75008122	C	T	331.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=33.18;SB=-7.597e+01;SOR=2.303;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:360,27,0
2	133032344	rs77832488	T	C	582.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=1;QD=32.38;SB=-2.530e+02;SOR=1.061;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:611,48,0
2	133032356	rs78666315	T	C	471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=33.70;SB=-1.791e+02;SOR=1.329;VQSLOD=4.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:500,39,0
2	133032358	rs79500599	G	C	492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=24.81;SB=-1.921e+02;SOR=1.329;VQSLOD=3.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:521,39,0
2	133032361	rs75490569	T	C	480.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=34.34;SB=-1.791e+02;SOR=1.329;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:509,39,0
2	133032365	.	C	A	465.77	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=33.27;SB=-1.841e+02;SOR=1.329;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:494,39,0
2	133032366	rs79835094	T	C	476.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=0;QD=34.05;SB=-1.791e+02;SOR=1.329;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:505,39,0
2	133032371	rs77170149	T	C	480.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=32.05;SB=-2.111e+02;SOR=1.112;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:509,39,0
2	133032385	rs78932547	T	C	601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=31.67;SB=-2.890e+02;SOR=1.022;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:630,48,0
2	133032394	rs76917410	A	G	504.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=29.69;SB=-2.341e+02;SOR=1.371;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:42:533,42,0
2	133032402	rs373746742	T	C	525.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=29.21;SB=-2.181e+02;SOR=1.493;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:554,42,0
2	133032410	rs376164608	G	A	605.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=30.29;SB=-3.030e+02;SOR=1.127;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:634,48,0
2	133032414	rs370895296	C	G	595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=28.37;SB=-3.580e+02;SOR=0.990;VQSLOD=4.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:624,45,0
2	133032421	rs373939649	A	G	574.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=30.25;SB=-3.300e+02;SOR=1.022;VQSLOD=3.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:603,45,0
2	133032422	rs72873958	T	C	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=31.57;SB=-3.200e+02;SOR=1.022;VQSLOD=4.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:628,45,0
2	133032433	rs368613340	T	C	615.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=26.77;SB=-3.950e+02;SOR=0.776;VQSLOD=4.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:644,48,0
2	133032438	rs150808190	A	G	654.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=28.47;SB=-4.360e+02;SOR=0.776;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:51:683,51,0
2	133032441	rs201148911	T	C	668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=29.08;SB=-4.080e+02;SOR=0.776;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:51:697,51,0
2	133032443	rs77785958	G	T	712.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=28.51;SB=-4.630e+02;SOR=0.770;VQSLOD=4.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:741,54,0
2	133032448	rs78619504	A	C	689.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=27.59;SB=-4.470e+02;SOR=0.770;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:51:718,51,0
2	133032469	rs79263765	T	C	778.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=28.84;SB=-4.710e+02;SOR=0.693;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:807,60,0
2	133032477	rs80235889	T	C	824.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=30.55;SB=-5.180e+02;SOR=0.765;VQSLOD=4.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:853,63,0
2	133032481	rs77490993	T	C	858.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=31.81;SB=-5.350e+02;SOR=0.765;VQSLOD=4.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:887,63,0
2	133032505	rs77049974	T	C	854.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8937;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=28.49;SB=-4.910e+02;SOR=0.976;VQSLOD=5.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:66:883,66,0
2	133032510	rs111821905	T	C	852.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=30.46;SB=-4.870e+02;SOR=0.997;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:881,66,0
2	133032513	rs112749017	T	C	851.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=30.42;SB=-4.950e+02;SOR=0.997;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:880,66,0
2	133032528	.	T	C	781.77	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=27.92;SB=-4.500e+02;SOR=1.179;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:60:810,60,0
2	133032536	rs112718918	T	C	746.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=26.67;SB=-4.000e+02;SOR=1.382;VQSLOD=4.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:57:775,57,0
2	133032541	rs113118700	T	C	765.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=27.35;SB=-3.950e+02;SOR=1.382;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:57:794,57,0
2	133032546	rs74636615	T	C	693.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.70;SB=-3.210e+02;SOR=1.528;VQSLOD=3.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:54:722,54,0
2	133032576	rs112114718	T	C	438.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=27.42;SB=-1.603e+02;SOR=2.049;VQSLOD=4.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:467,36,0
2	133032580	rs192231100	A	G	429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=28.65;SB=-1.653e+02;SOR=1.911;VQSLOD=4.88;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:33:458,33,0
2	133032589	rs148570696	A	G	380.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.38;SB=-1.483e+02;SOR=1.911;VQSLOD=4.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:409,30,0
2	133032597	rs144632610	C	G	311.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=28.34;SB=-1.245e+02;SOR=1.802;VQSLOD=4.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:12:24:340,24,0
2	133032598	rs138582211	A	C	290.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.23;SB=-1.245e+02;SOR=1.802;VQSLOD=3.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:319,24,0
2	133032605	rs74973723	A	G	305.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.48;SB=-1.115e+02;SOR=1.981;VQSLOD=3.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:334,24,0
2	133032614	rs78511634	A	C	311.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.98;SB=-1.235e+02;SOR=1.981;VQSLOD=4.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:340,24,0
2	133032623	rs80160257	A	C	349.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=31.80;SB=-8.297e+01;SOR=2.494;VQSLOD=5.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:378,27,0
2	133033315	rs78501675	G	A	260.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=23.71;SB=-1.653e+02;SOR=1.270;VQSLOD=3.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:289,21,0
2	133033319	rs80249606	A	G	258.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=23.53;SB=-1.603e+02;SOR=1.270;VQSLOD=3.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:287,21,0
2	133033326	rs146736791	G	C	233.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=23.38;SB=-1.653e+02;SOR=1.085;VQSLOD=3.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:262,18,0
2	133033331	rs370499786	T	C	230.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=23.08;SB=-1.483e+02;SOR=1.085;VQSLOD=3.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:259,18,0
2	133033335	rs375671675	G	C	233.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=23.38;SB=-1.603e+02;SOR=1.085;VQSLOD=3.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:262,18,0
2	133033428	rs62163786	T	C	258.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=25.88;SB=-1.483e+02;SOR=0.693;VQSLOD=3.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:287,21,0
2	133033515	rs73958507	G	T	253.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=23.07;SB=-1.931e+02;SOR=0.859;VQSLOD=2.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:282,21,0
2	133033517	rs73958508	T	C	247.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=22.53;SB=-1.851e+02;SOR=0.859;VQSLOD=2.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:276,21,0
2	133033520	rs111413680	C	G	255.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=23.25;SB=-1.931e+02;SOR=0.859;VQSLOD=1.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:284,21,0
2	133033524	rs75402234	T	C	254.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=23.16;SB=-1.931e+02;SOR=0.859;VQSLOD=2.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:283,21,0
2	133033525	rs78377595	T	C	247.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=22.53;SB=-1.851e+02;SOR=0.859;VQSLOD=2.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:276,21,0
2	133033543	rs74778681	T	C	247.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=22.53;SB=-1.851e+02;SOR=0.859;VQSLOD=2.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:276,21,0
2	133033569	rs77447366	T	A	204.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9926;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.48;SB=-1.373e+02;SOR=1.085;VQSLOD=3.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:233,18,0
2	133033851	rs77670704	A	G	435.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=1;QD=27.24;SB=-2.291e+02;SOR=0.818;VQSLOD=4.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:464,33,0
2	133033861	rs76206743	T	C	419.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=1;QD=26.24;SB=-2.510e+02;SOR=0.818;VQSLOD=3.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:448,33,0
2	133033866	rs78501278	A	G	416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=1;QD=26.05;SB=-2.051e+02;SOR=0.976;VQSLOD=3.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:445,33,0
2	133033873	rs76881758	C	G	483.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=1;QD=26.88;SB=-3.050e+02;SOR=0.804;VQSLOD=3.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:36:512,36,0
2	133033912	rs79793127	C	G	384.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=-0.204;QD=27.50;ReadPosRankSum=-1.016;SB=-1.643e+02;SOR=0.693;VQSLOD=2.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,13:14:5:412,0,5
2	133034200	rs36158413	A	G	292.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=29.28;SB=-1.831e+02;SOR=0.693;VQSLOD=4.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:321,24,0
2	133034204	rs139329147	T	C	291.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=29.18;SB=-1.851e+02;SOR=0.693;VQSLOD=5.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:320,24,0
2	133034212	rs75812324	A	C	286.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=28.68;SB=-1.781e+02;SOR=0.693;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:315,24,0
2	133034214	rs75629792	A	C	295.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=29.58;SB=-1.851e+02;SOR=0.693;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:324,24,0
2	133034232	rs75986417	T	C	323.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=29.43;SB=-2.001e+02;SOR=0.859;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:352,27,0
2	133034245	rs77208296	T	C	259.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-1.821e+02;SOR=0.693;VQSLOD=3.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:288,21,0
2	133034255	rs75220162	G	T	264.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=26.48;SB=-1.573e+02;SOR=1.085;VQSLOD=4.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:293,21,0
2	133034265	rs78196596	T	A	260.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=26.08;SB=-1.603e+02;SOR=1.085;VQSLOD=3.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:289,21,0
2	133034272	rs77362682	T	C	265.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=26.58;SB=-1.483e+02;SOR=1.085;VQSLOD=4.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:294,21,0
2	133034275	rs78222386	C	G	265.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=26.58;SB=-1.653e+02;SOR=1.085;VQSLOD=3.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:294,21,0
2	133034303	rs76020462	G	A	253.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=25.38;SB=-1.533e+02;SOR=0.693;VQSLOD=3.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:282,21,0
2	133034697	rs79458802	G	A	298.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.88;SB=-1.603e+02;SOR=1.085;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:327,24,0
2	133034700	rs62163793	A	G	284.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.48;SB=-1.583e+02;SOR=1.085;VQSLOD=2.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:313,24,0
2	133034703	rs76024319	T	C	280.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.08;SB=-1.025e+02;SOR=1.402;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:309,24,0
2	133034705	rs78138921	C	T	295.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.58;SB=-1.603e+02;SOR=1.085;VQSLOD=4.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:324,24,0
2	133034729	rs62163794	C	T	351.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-2.331e+02;SOR=0.818;VQSLOD=2.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:27:380,27,0
2	133034747	rs62163795	A	G	313.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.14;SB=-2.361e+02;SOR=0.836;VQSLOD=1.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:24:342,24,0
2	133036029	rs73958512	T	G	861.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=28.73;SB=-3.900e+02;SOR=0.976;VQSLOD=5.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:890,72,0
2	133036033	rs77362164	A	G	866.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=28.89;SB=-3.850e+02;SOR=0.976;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:895,72,0
2	133036041	rs75026118	A	G	868.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=29.96;SB=-3.610e+02;SOR=1.071;VQSLOD=4.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:897,72,0
2	133036049	.	T	C	820.77	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=29.31;SB=-3.210e+02;SOR=1.179;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:849,72,0
2	133036056	.	T	G	862.77	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=31.95;SB=-2.800e+02;SOR=1.302;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:891,72,0
2	133039074	.	A	G	228.84	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=22.88;SB=-1.761e+02;SOR=0.693;VQSLOD=2.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:257,18,0
2	133039075	.	T	C	231.84	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=23.18;SB=-2.001e+02;SOR=0.693;VQSLOD=2.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:260,18,0
2	133039087	.	A	G	228.84	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=22.88;SB=-1.851e+02;SOR=0.693;VQSLOD=2.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:257,18,0
2	133039090	rs79338524	T	C	223.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=22.38;SB=-1.791e+02;SOR=0.693;VQSLOD=2.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:252,18,0
2	133039101	rs78718860	A	G	220.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=22.08;SB=-1.653e+02;SOR=0.693;VQSLOD=2.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:249,18,0
2	133039105	rs76120830	T	C	228.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=22.88;SB=-1.851e+02;SOR=0.693;VQSLOD=2.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:18:257,18,0
2	133066724	rs74463227	AGAT	A	357.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=28.92;RPA=2,1;RU=GAT;ReadPosRankSum=-2.638;SB=0.00;SOR=1.609;STR;VQSLOD=7.32;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:99:395,0,159
2	133066879	rs2677610	G	A	1168.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.609;QD=27.83;ReadPosRankSum=-0.318;SB=-6.901e+02;SOR=0.580;VQSLOD=2.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,39:42:22:1197,22,0
2	133067025	rs2459643	C	G	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-0.566;QD=18.20;ReadPosRankSum=-0.125;SB=0.00;SOR=0.976;VQSLOD=2.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:283,0,201
2	133070125	rs2459644	A	C	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.70;ReadPosRankSum=2.258;SB=0.00;SOR=0.307;VQSLOD=7.36;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:99:164,0,302
2	133070245	rs2459645	A	G	428.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.285;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.46;ReadPosRankSum=1.112;SB=-2.340e+02;SOR=0.553;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,17:41:99:457,0,636
2	133070318	rs2459646	A	C	720.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.429;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.035;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-0.156;SB=-3.740e+02;SOR=0.859;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:749,0,724
2	133070449	rs2459647	T	C	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-0.012;SB=-2.580e+02;SOR=0.686;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,18:45:99:454,0,712
2	133070508	rs7340197	G	T	479.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.042;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-0.367;SB=-2.320e+02;SOR=0.709;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:508,0,664
2	133070531	.	C	T	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.169;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.423;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.48;ReadPosRankSum=1.142;SB=-2.080e+02;SOR=0.385;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:416,0,500
2	133070556	.	T	C	317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.564;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.59;ReadPosRankSum=1.781;SB=-1.360e+02;SOR=0.412;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:346,0,466
2	133074683	.	T	C	481.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.170;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.503;QD=21.90;ReadPosRankSum=-1.421;SB=-3.230e+02;SOR=0.352;VQSLOD=2.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,21:22:2:508,2,0
2	133075027	rs7349198	G	A	869.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.566;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.950;HaplotypeScore=2.6250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.902;SB=-3.860e+02;SOR=0.944;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,34:73:99:898,0,1086
2	133075069	rs72991565	A	G	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.008;SB=-1.970e+02;SOR=0.693;VQSLOD=6.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,16:62:99:333,0,1375
2	133075104	.	C	T	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.369;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.009;SB=-3.510e+02;SOR=0.564;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,23:51:99:611,0,827
2	133075207	rs7349365	C	T	1156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-1.250;SB=-5.810e+02;SOR=0.783;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,46:87:99:1185,0,1146
2	133075639	rs7340191	G	T	837.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9990;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-2.838;QD=11.97;ReadPosRankSum=1.266;SB=-4.020e+02;SOR=0.755;VQSLOD=0.231;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,31:70:99:866,0,1054
2	133075664	rs7340499	T	G	920.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.786;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-2.722;QD=13.34;ReadPosRankSum=1.361;SB=-4.780e+02;SOR=0.779;VQSLOD=0.952;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,32:69:99:949,0,937
2	133075674	rs7340192	G	C	859.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=-2.702;QD=13.43;ReadPosRankSum=1.561;SB=-4.790e+02;SOR=0.707;VQSLOD=1.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,30:64:99:888,0,975
2	133076032	rs2598809	T	G	660.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.505;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=1.592;QD=14.36;ReadPosRankSum=0.883;SB=-3.050e+02;SOR=0.733;VQSLOD=2.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,21:46:99:689,0,820
2	133076048	rs2598808	A	G	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=1.577;QD=12.98;ReadPosRankSum=0.302;SB=-3.260e+02;SOR=0.715;VQSLOD=1.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,24:51:99:690,0,826
2	133076221	rs7340213	G	A	816.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=1.015;QD=12.19;ReadPosRankSum=0.194;SB=-4.060e+02;SOR=0.739;VQSLOD=1.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,34:67:99:845,0,860
2	133076229	rs2598806	A	G	816.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.275;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=1.001;QD=13.17;ReadPosRankSum=0.282;SB=-4.290e+02;SOR=0.540;VQSLOD=1.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,32:62:99:845,0,763
2	133076311	rs7340138	T	C	450.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.54;ReadPosRankSum=-1.142;SB=-1.100e+02;SOR=0.321;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,18:31:99:479,0,356
2	133094810	rs2923375	C	T	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.179;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=-0.778;QD=16.99;ReadPosRankSum=0.156;SB=-7.102e+01;SOR=0.542;VQSLOD=2.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,15:26:99:470,0,359
2	133094867	rs2945064	A	C	648.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.739;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=-0.958;QD=13.52;ReadPosRankSum=1.518;SB=-1.700e+02;SOR=0.920;VQSLOD=1.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,24:48:99:677,0,661
2	133094874	rs2945065	T	C	686.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.090;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=-0.924;QD=13.21;ReadPosRankSum=0.926;SB=-2.440e+02;SOR=0.612;VQSLOD=1.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,27:52:99:715,0,685
2	133095159	rs2443258	A	G	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=52.10;MQ0=0;MQRankSum=-4.004;QD=13.56;ReadPosRankSum=0.253;SB=-1.765e+00;SOR=1.721;VQSLOD=0.418;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:28:99:408,0,454
2	133095185	rs2459680	A	C	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.104;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.63;MQ0=0;MQRankSum=-3.258;QD=17.22;ReadPosRankSum=-0.469;SB=0.00;SOR=1.085;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,13:22:99:407,0,283
2	133174764	rs2241764	C	T	2359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.621;DB;DP=198;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-0.452;SB=-1.393e+03;SOR=0.710;VQSLOD=6.39;culprit=DP	GT:AD:DP:GQ:PL	0/1:105,93:198:99:2388,0,2773
2	133174999	rs2241763	A	G	2396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;DB;DP=193;Dels=0.00;ExcessHet=3.0103;FS=1.116;HaplotypeScore=5.2827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=0.246;SB=-1.262e+03;SOR=0.805;VQSLOD=6.52;culprit=DP	GT:AD:DP:GQ:PL	0/1:98,95:193:99:2425,0,2702
2	133175524	rs34879126	G	A	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.288;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-1.542;SB=-1.760e+02;SOR=0.542;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,18:31:99:456,0,445
2	133404116	.	G	T	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.314;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-0.533;SB=-1.765e+00;SOR=1.445;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:214,0,326
2	133425912	rs2709533	C	T	1634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.36;SB=-4.320e+02;SOR=2.448;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1663,120,0
2	133426183	rs2709532	G	C	770.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-4.076e+01;SOR=4.712;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:799,60,0
2	133489601	rs56284623	A	G	408.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.277;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=0.759;SB=-1.580e+02;SOR=0.954;VQSLOD=7.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,16:45:99:437,0,798
2	133539460	rs6717116	A	T	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.40;ReadPosRankSum=-0.349;SB=-9.732e-01;SOR=1.179;VQSLOD=8.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:13:81:81,0,283
2	133539566	rs6730282	G	A	370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.298;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=7.552;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-0.186;SB=-1.080e+02;SOR=1.868;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,15:37:99:399,0,558
2	133541444	rs12691829	T	C	978.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.908;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=4.556;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.033;SB=-4.510e+02;SOR=1.251;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1007,0,975
2	133541454	rs12691830	A	G	980.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.948;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=8.159;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.144;SB=-3.600e+02;SOR=1.525;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,36:71:99:1009,0,1002
2	133541575	rs12611515	C	T	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.163;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=-1.514;SB=-2.540e+02;SOR=1.003;VQSLOD=7.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,25:62:99:643,0,985
2	133542014	rs12616282	T	C	867.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.896;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.239;SB=-4.390e+02;SOR=0.880;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,33:74:99:896,0,1101
2	133542545	rs10191147	G	A	1702.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.079;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=2.544;SB=-7.300e+02;SOR=0.637;VQSLOD=8.07;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:62,57:119:99:1731,0,1719
2	133554288	rs1868076	A	G	572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.823;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=-0.489;SB=-2.190e+02;SOR=0.861;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,23:52:99:601,0,747
2	133618220	rs1447549	A	G	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.293;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.501;SB=-6.700e+01;SOR=0.520;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,14:37:99:405,0,700
2	133626706	rs17326258	T	C	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.108;SB=0.00;SOR=0.412;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:130,0,205
2	133881219	rs2278456	G	A	1371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-3.860e+02;SOR=2.356;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1400,105,0
2	133887421	rs13004057	G	T	1409.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-3.980e+02;SOR=2.461;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1438,108,0
2	134060719	rs7604084	T	C	914.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=4.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=0.466;SB=-5.550e+02;SOR=0.323;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,39:83:99:943,0,1178
2	134275184	rs72846400	C	T	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.409;SB=-4.076e+01;SOR=0.180;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:239,0,278
2	134884700	rs6430498	G	A	1302.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-3.990e+02;SOR=2.303;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1331,99,0
2	135075378	rs3791280	G	A	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.125;SB=-3.401e+01;SOR=0.446;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:168,0,246
2	135076090	rs4954133	C	T	748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=0.00;SOR=5.994;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:777,57,0
2	135076111	rs4954134	C	G	802.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-3.876e+01;SOR=4.804;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:831,63,0
2	135096097	rs7598410	T	C	362.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-7.297e+01;SOR=2.303;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:391,30,0
2	135102453	rs3214771	TA	T	341.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DB;DP=12;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.48;RPA=3,2;RU=A;ReadPosRankSum=0.753;SB=-1.765e+00;SOR=4.804;STR;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,10:12:42:379,0,42
2	135102742	rs2290048	A	G	81.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.878;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.54;ReadPosRankSum=-0.319;SB=-9.732e-01;SOR=0.846;VQSLOD=8.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:18:99:110,0,426
2	135470855	rs16830938	G	A	1245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=1.770;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.035;SB=-7.230e+02;SOR=0.495;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,47:86:99:1274,0,954
2	135602601	rs6430545	T	A	688.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.899;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.590;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=2.395;SB=-2.501e+01;SOR=2.140;VQSLOD=6.39;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:24,23:47:99:717,0,683
2	135629927	rs12469941	C	T	398.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.548;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-0.607;SB=-1.330e+02;SOR=0.472;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,14:35:99:427,0,655
2	135676487	.	G	A	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.735;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-0.903;SB=-2.710e+02;SOR=0.330;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,18:42:99:463,0,658
2	135677268	rs3769024	G	A	301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.579;HaplotypeScore=4.2498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=1.075;SB=-1.440e+02;SOR=0.387;VQSLOD=7.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,14:33:99:330,0,598
2	135677471	rs67897534	A	AGTTT	621.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;DB;DP=32;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=1.594;SB=-2.540e+02;SOR=0.223;VQSLOD=7.61;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,11:32:99:659,0,1204
2	135694354	rs1823118	G	C	289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=-2.747;SB=-4.276e+01;SOR=0.223;VQSLOD=8.45;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,10:19:99:318,0,279
2	135694379	rs1374289	C	T	407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.131;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.418;SB=-3.400e+01;SOR=0.518;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:436,0,561
2	135700151	rs3816339	A	T	1297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.053;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-1.173;SB=-5.880e+02;SOR=0.709;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,51:107:99:1326,0,1594
2	135705558	rs1979033	G	A	150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.452;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.28;ReadPosRankSum=-0.127;SB=-2.501e+01;SOR=0.941;VQSLOD=8.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,7:24:99:179,0,523
2	135710322	rs10166142	A	G	790.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.221;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.315;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.775;SB=-3.050e+02;SOR=1.158;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,27:57:99:819,0,713
2	135711516	rs3814355	C	T	682.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.526;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.824;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=-0.688;SB=-2.540e+02;SOR=1.358;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:711,0,513
2	135711657	rs3814354	G	A	1583.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.846;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=3.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-0.798;SB=-6.480e+02;SOR=0.385;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,54:110:99:1612,0,1711
2	135740876	rs60969462	A	G	517.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=5.391;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=0.586;SB=-2.890e+02;SOR=0.687;VQSLOD=6.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,23:66:99:546,0,1153
2	135741061	rs12623713	G	A	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.103;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.29;ReadPosRankSum=1.518;SB=-1.320e+02;SOR=0.165;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:30:99:217,0,630
2	135745392	rs11888766	G	A	681.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.061;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.002;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=-0.865;SB=-1.880e+02;SOR=0.906;VQSLOD=7.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,26:76:99:710,0,1547
2	135745545	rs11899779	C	T	668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.786;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.921;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-0.944;SB=-1.390e+02;SOR=1.281;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,24:68:99:697,0,1361
2	135745722	rs10928526	A	G	1037.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.460;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.801;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-1.725;SB=-4.960e+02;SOR=0.596;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,40:95:99:1066,0,1480
2	135748872	rs144837592	AAAAAC	A	1024.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.30;RPA=7,6;RU=AAAAC;ReadPosRankSum=-0.318;SB=-1.150e+02;SOR=0.784;STR;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:46:99:1062,0,1451
2	135756265	rs58663889	G	T	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.692;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-0.388;SB=0.00;SOR=0.610;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:337,0,380
2	135762980	rs7606415	C	T	834.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.913;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-0.521;SB=-4.730e+02;SOR=0.738;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,36:78:99:863,0,1235
2	135851016	.	A	G	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.91;ReadPosRankSum=0.339;SB=0.00;SOR=2.147;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:81:365,0,81
2	135893372	rs10445686	A	G	882.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.712;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-0.289;SB=-4.220e+02;SOR=0.582;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,32:61:99:911,0,771
2	135911422	rs17261772	T	C	620.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.565;SB=-3.180e+02;SOR=0.433;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:649,0,817
2	136103035	.	T	C	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=4.6880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.16;ReadPosRankSum=0.151;SB=-8.097e+01;SOR=0.204;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:354,0,176
2	136393658	rs961360	A	G	794.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.278;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=4.778;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-2.063;SB=-4.860e+02;SOR=0.441;VQSLOD=7.82;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,31:67:99:823,0,1081
2	136396300	rs2278731	T	C	337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.24;ReadPosRankSum=0.718;SB=-1.390e+02;SOR=0.562;VQSLOD=8.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,15:41:99:366,0,719
2	136407445	rs1446586	A	G	568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.067;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.582;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=-0.422;SB=-1.010e+02;SOR=1.091;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,21:40:99:597,0,614
2	136407479	rs1446585	A	G	798.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.189;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.819;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-0.394;SB=-1.630e+02;SOR=1.258;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:827,0,845
2	136467119	rs2304366	C	T	442.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.313;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.967;SB=-1.330e+02;SOR=0.813;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:471,0,506
2	136467164	rs2304367	C	A	606.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-1.523e+02;SOR=2.419;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:635,48,0
2	136480013	rs148346034	T	C	499.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.958;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.377;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.292;SB=-1.790e+02;SOR=0.252;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:528,0,496
2	136511817	rs1050115	A	G	740.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.082;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.988;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-2.381;SB=-4.480e+02;SOR=0.511;VQSLOD=7.59;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,32:63:99:769,0,827
2	136527443	rs67896933	G	GTGAT	2355.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DB;DP=100;ExcessHet=3.0103;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.21;RPA=2,3;RU=TGAT;ReadPosRankSum=0.269;SB=-8.480e+02;SOR=1.014;STR;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,39:100:99:2393,0,3497
2	136545844	rs1042712	C	G	762.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.926;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=0.580;SB=-2.090e+02;SOR=0.746;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:791,0,655
2	136546110	rs2278544	A	G	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-0.484;SB=0.00;SOR=0.569;VQSLOD=10.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:199,0,249
2	136552188	rs3213890	G	A	591.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.143;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.234;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-1.187;SB=-2.070e+02;SOR=1.371;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,23:36:99:620,0,344
2	136555525	rs2015532	T	G	936.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.745;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=-1.466;SB=-3.860e+02;SOR=0.922;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,34:53:99:965,0,549
2	136555659	rs2322659	T	C	1452.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.599;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=1.582;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=1.124;SB=-1.021e+03;SOR=0.579;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,59:105:99:1481,0,1096
2	136558157	rs748841	C	T	1116.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.615;SB=-3.080e+02;SOR=0.636;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,41:66:99:1145,0,723
2	136561557	rs2304371	G	A	1280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.568;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.373;SB=-6.810e+02;SOR=0.722;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,47:102:99:1309,0,1404
2	136561735	rs2304370	G	A	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.772;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=1.180;SB=-3.477e+01;SOR=0.132;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:251,0,385
2	136565028	rs10928549	C	G	1366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-2.471e+02;SOR=3.145;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1395,102,0
2	136569848	rs12988076	C	A	301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-0.441;SB=-3.000e+01;SOR=0.871;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:330,0,462
2	136575199	rs6719488	G	T	1419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-0.163;SB=-8.140e+02;SOR=0.650;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:66,52:118:99:1448,0,1832
2	136575534	rs4954449	T	C	2202.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-1.314e+03;SOR=0.992;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2231,160,0
2	136586958	rs10186843	C	A	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=-0.175;SB=-7.197e+01;SOR=0.473;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,15:20:99:475,0,148
2	136590746	rs3754689	C	T	598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.885;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.888;SB=-2.390e+02;SOR=1.036;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,21:47:99:627,0,690
2	136594158	rs2236783	G	A	1850.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=8.597;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-0.727;SB=-9.400e+02;SOR=1.090;VQSLOD=4.89;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,70:147:99:1879,0,2097
2	136610598	rs4988226	A	G	799.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.694;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.659;HaplotypeScore=2.6552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=0.978;SB=-1.470e+02;SOR=0.412;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:828,0,712
2	136614255	rs309180	G	A	597.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-0.622;SB=-3.120e+02;SOR=0.856;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:626,0,404
2	136622825	rs309177	A	G	762.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.0169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.24;SB=-1.115e+02;SOR=3.767;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:60:791,60,0
2	136626078	rs3769001	A	G	147.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.726;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-0.207;SB=0.00;SOR=0.569;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:176,0,235
2	136633771	rs191079	T	C	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=1.760;SB=-1.765e+00;SOR=2.030;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:167,0,217
2	136633962	rs1057031	G	A	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.385;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=1.463;SB=-2.190e+02;SOR=0.512;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:337,0,484
2	136674028	rs309172	A	G	270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.034;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.358;SB=0.00;SOR=0.330;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:299,0,450
2	136680534	rs309158	A	G	732.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.323;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.747;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-0.797;SB=-6.000e+01;SOR=1.329;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:761,0,769
2	136690414	rs34744196	TA	T	324.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.717;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.28;RPA=15,14;RU=A;ReadPosRankSum=0.182;SB=-7.900e+01;SOR=0.765;STR;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:42:99:362,0,303
2	136690425	rs371309040	A	G	322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.87;ReadPosRankSum=2.089;SB=-9.100e+01;SOR=0.446;VQSLOD=6.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,18:41:99:351,0,701
2	136719173	rs6430594	A	G	706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.059;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=6.842;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=-1.245;SB=-3.200e+01;SOR=2.804;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,21:30:99:735,0,198
2	136740900	rs687670	T	C	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.917;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.244;SB=-1.440e+02;SOR=0.148;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:258,0,205
2	136743143	rs2278682	G	C	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.518;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.799;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-1.124;SB=-6.400e+01;SOR=1.193;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:319,0,392
2	136873549	rs2680880	A	T	2098.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-6.180e+02;SOR=2.165;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2127,157,0
2	137639616	rs1465612	C	T	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.69;SB=0.00;SOR=5.670;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:628,48,0
2	137640006	rs11298935	CT	C	315.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.29;RPA=8,7;RU=T;SB=0.00;SOR=5.283;STR;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:15:39:353,39,0
2	138000226	rs7605259	T	C	985.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2118;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.94;SB=-4.850e+02;SOR=1.483;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:78:1014,78,0
2	138030271	rs10182152	G	A	1794.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-3.360e+02;SOR=3.014;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1823,138,0
2	138163391	rs1551281	T	C	1749.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-2.441e+02;SOR=3.702;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1778,129,0
2	138169158	rs1463285	T	C	1081.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-1.653e+02;SOR=3.407;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1110,81,0
2	138208631	rs1453302	G	T	1072.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=8.895;HaplotypeScore=1.4725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=0.271;SB=-1.543e+02;SOR=0.054;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,36:63:99:1101,0,879
2	138237038	rs1584435	C	T	368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=-1.777;SB=-6.800e+01;SOR=1.244;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:397,0,221
2	138321018	rs17742691	G	C	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.319;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=0.395;SB=-3.200e+01;SOR=1.483;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:529,0,416
2	138375815	rs17692768	T	C	1070.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.460;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=2.168;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-0.013;SB=-1.980e+02;SOR=1.154;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,38:88:99:1099,0,1414
2	138375896	rs7574994	G	A	2082.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.703;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=1.341;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.115;SB=-8.240e+02;SOR=0.870;VQSLOD=7.69;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,74:151:99:2111,0,2180
2	138375898	rs73961010	C	A	1960.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.782;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=1.341;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.199;SB=-8.220e+02;SOR=0.870;VQSLOD=7.08;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,74:151:99:1989,0,2244
2	138375972	rs17692792	A	T	3078.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.416;DB;DP=187;Dels=0.00;ExcessHet=3.0103;FS=3.388;HaplotypeScore=3.3570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=0.349;SB=-1.739e+03;SOR=0.579;VQSLOD=6.48;culprit=DP	GT:AD:DP:GQ:PL	0/1:78,109:187:99:3107,0,2039
2	138376209	rs17743744	C	T	510.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.878;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.389;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.552;SB=-1.210e+02;SOR=1.259;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,18:42:99:539,0,606
2	138378351	rs58339575	AG	A	1050.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.932;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.053;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=1.358;SB=-2.080e+02;SOR=0.653;VQSLOD=2.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,28:58:99:1088,0,1215
2	138378388	rs1448922	A	G	550.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.866;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.371;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=0.942;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=0.042;SB=-2.801e+01;SOR=2.356;VQSLOD=0.579;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,17:30:99:579,0,353
2	138412985	rs10496784	G	T	887.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.892;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=4.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=0.271;SB=-1.590e+02;SOR=1.465;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,30:55:99:916,0,704
2	138413018	rs62168467	C	T	1318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.505;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=5.338;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=0.072;SB=-2.970e+02;SOR=1.419;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,45:77:99:1347,0,914
2	138413379	rs62168468	T	A	295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.902;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=-1.138;SB=0.00;SOR=1.765;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:80:324,0,80
2	138420996	rs10206850	A	G	1470.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-7.280e+02;SOR=1.154;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1499,108,0
2	138721942	rs67985366	ATT	A	315.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;DB;DP=26;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;RPA=17,15;RU=T;ReadPosRankSum=1.348;SB=-2.501e+01;SOR=1.863;STR;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:26:99:353,0,174
2	138727607	rs3100702	G	A	254.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.549;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.189;SB=0.00;SOR=0.368;VQSLOD=10.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:283,0,479
2	139036688	rs6757587	C	G	543.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-3.330e+02;SOR=0.793;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:572,42,0
2	139045855	rs35998722	C	T	1105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.937;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.691;SB=-5.250e+02;SOR=0.862;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,41:69:99:1134,0,761
2	139045972	rs6733578	T	C	2320.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-1.367e+03;SOR=0.836;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2349,169,0
2	139045987	rs13033503	C	T	932.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-0.949;SB=-5.430e+02;SOR=0.569;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,36:75:99:961,0,979
2	139046301	rs12691943	A	G	4431.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-2.508e+03;SOR=1.052;VQSLOD=5.38;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,147:148:99:4460,334,0
2	139046385	rs13382964	G	A	3406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-1.587e+03;SOR=1.493;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3435,247,0
2	139308397	.	T	TTCTCTC	475.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.02;MQ0=0;MQRankSum=1.910;QD=13.21;RPA=11,14;RU=TC;ReadPosRankSum=-0.680;SB=-2.200e+02;SOR=0.476;STR;VQSLOD=1.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,7:21:99:513,0,742
2	139310410	rs373121115	C	A	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.618;SB=0.00;SOR=0.551;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:166,0,214
2	141004529	rs2129483	A	G	713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=0.00;SOR=6.184;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:742,63,0
2	141026986	rs12477489	G	A	1457.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-5.560e+02;SOR=1.765;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1486,108,0
2	141267744	rs1948051	T	C	774.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.94;SB=0.00;SOR=6.273;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:803,66,0
2	141272057	rs6430906	T	A	366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=0.00;SOR=4.977;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:395,30,0
2	141274295	rs1542655	C	T	522.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;SB=0.00;SOR=5.421;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:551,42,0
2	141274576	rs4954672	T	C	2907.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-9.240e+02;SOR=2.174;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2936,214,0
2	141283603	rs1352047	T	G	1856.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.40;SB=-3.180e+02;SOR=3.014;VQSLOD=3.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1885,138,0
2	141284041	rs7562323	A	G	804.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=0.00;SOR=6.184;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:833,63,0
2	141291841	rs10928755	T	A	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=0.00;SOR=4.804;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
2	141298467	rs6729619	A	C	758.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.51;SB=0.00;SOR=6.091;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:787,60,0
2	141298674	rs13013854	T	C	769.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.940;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-0.332;SB=-3.120e+02;SOR=0.650;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,30:61:99:798,0,781
2	141298682	rs11694934	G	C	1814.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-6.470e+02;SOR=1.961;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1843,132,0
2	141298749	rs11694970	G	C	990.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-7.797e+01;SOR=4.332;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:1019,75,0
2	141299317	rs9287535	A	G	2166.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.39;SB=-4.120e+02;SOR=3.223;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2195,160,0
2	141441072	rs1966748	C	T	574.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.99;SB=-3.960e+02;SOR=0.963;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:42:603,42,0
2	141441125	rs1470179	T	A	510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.88;SB=-2.351e+02;SOR=1.609;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:539,39,0
2	141441298	rs10208923	G	A	265.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.58;SB=-1.603e+02;SOR=1.085;VQSLOD=5.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:294,21,0
2	141457985	rs13431727	T	A	1814.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-1.063e+03;SOR=1.022;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1843,135,0
2	141459964	rs16844555	C	T	3230.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-1.528e+03;SOR=1.167;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3258,247,0
2	141460213	rs1372253	G	A	936.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;SB=-3.677e+01;SOR=5.211;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:965,75,0
2	141527013	rs13002947	A	G	1257.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-1.215e+02;SOR=4.174;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:96:1286,96,0
2	141528592	rs7599219	T	C	2616.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-1.231e+03;SOR=1.559;VQSLOD=4.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2645,199,0
2	141533573	rs13009144	A	G	632.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=0.00;SOR=5.784;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:661,51,0
2	141533662	rs996361	T	C	1836.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-6.030e+02;SOR=2.147;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1865,135,0
2	141571329	rs3749010	T	C	2747.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-1.631e+03;SOR=0.953;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2776,208,0
2	141598473	rs61163231	A	AT	2187.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.92;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;SB=-5.120e+02;SOR=2.352;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2225,141,0
2	141707868	rs6748626	G	T	335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.84;ReadPosRankSum=0.553;SB=-1.810e+02;SOR=0.815;VQSLOD=8.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,15:38:99:364,0,561
2	141708021	rs6706503	T	A	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.489;SB=-6.800e+01;SOR=0.473;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:230,0,284
2	141709406	rs1991540	T	G	1360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.221;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=3.776;HaplotypeScore=2.5885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=1.937;SB=-8.340e+02;SOR=0.412;VQSLOD=7.77;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:46,50:96:99:1389,0,1181
2	141709419	rs1429348	T	G	1208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.993;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=3.714;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.268;SB=-6.490e+02;SOR=0.922;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,46:98:99:1237,0,1399
2	141762830	rs13413663	C	T	609.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=-4.076e+01;SOR=4.294;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:638,48,0
2	141771058	rs3791766	T	A	680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-3.577e+01;SOR=4.514;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:709,54,0
2	141777763	rs12615322	G	T	667.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=0.00;SOR=5.892;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:696,54,0
2	141816621	rs1525579	A	G	433.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=-2.061e+02;SOR=1.473;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:462,33,0
2	141945949	rs1249434	C	T	1236.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.03;SB=-1.603e+02;SOR=3.737;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:96:1265,96,0
2	142012036	rs9973397	T	G	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.333;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-0.936;SB=-1.290e+02;SOR=0.937;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,12:32:99:326,0,636
2	142238190	rs72849629	T	C	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.179;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=-1.462;SB=-1.765e+00;SOR=1.329;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:472,0,252
2	142356638	rs12052826	C	A	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.08;ReadPosRankSum=0.370;SB=-1.360e+02;SOR=0.105;VQSLOD=4.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:46:269,0,46
2	142567738	rs28529494	G	T	662.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.14;SB=-4.076e+01;SOR=3.716;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:691,54,0
2	143643010	rs199895914	C	T	1130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=5.357;HaplotypeScore=2.8936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-0.970;SB=-5.950e+02;SOR=0.754;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1159,0,1169
2	143676144	.	T	A	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=58.47;MQ0=0;MQRankSum=-0.473;QD=18.52;ReadPosRankSum=1.097;SB=0.00;SOR=1.270;VQSLOD=2.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:232,0,121
2	143713700	rs351674	T	A	232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=-1.640;SB=-5.800e+01;SOR=0.392;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:261,0,424
2	143718459	.	T	TAAAA	403.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;DP=23;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;RPA=11,15;RU=A;ReadPosRankSum=1.762;SB=-1.190e+02;SOR=0.088;STR;VQSLOD=7.49;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,11:23:99:441,0,492
2	143742532	rs10496933	A	G	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=1.451;SB=0.00;SOR=0.616;VQSLOD=9.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:317,0,390
2	143746494	rs10496935	C	G	602.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=5.210;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-0.270;SB=-4.170e+02;SOR=0.257;VQSLOD=7.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,26:61:99:631,0,932
2	143787161	rs6429999	C	A	768.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.898;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.022;HaplotypeScore=4.7871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=1.065;SB=-4.000e+02;SOR=0.544;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,32:59:99:797,0,713
2	143787274	rs6430000	C	T	1780.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.82;SB=-8.030e+02;SOR=1.402;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1809,132,0
2	143913004	rs2580857	T	G	660.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-4.276e+01;SOR=4.407;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:689,51,0
2	143973860	rs1451805	G	A	1335.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=-2.001e+02;SOR=3.556;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1364,102,0
2	144193151	.	C	CT	566.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.54;RPA=14,15;RU=T;ReadPosRankSum=-1.022;SB=-2.050e+02;SOR=0.859;STR;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,25:35:1:497,0,1
2	144899559	rs3731958	C	A	1071.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.568;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.936;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.491;SB=-2.940e+02;SOR=0.859;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,38:86:99:1100,0,1263
2	144934655	.	A	AG	732.73	PASS	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;RPA=4,5;RU=G;SB=-4.176e+01;SOR=4.615;STR;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:21:60:770,60,0
2	144934819	.	T	TA	362.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;DP=37;ExcessHet=3.0103;FS=3.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;RPA=14,15;RU=A;ReadPosRankSum=-0.620;SB=-8.900e+01;SOR=1.708;STR;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,20:37:99:400,0,147
2	145121339	rs10206546	G	A	393.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.547;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.528;SB=0.00;SOR=0.963;VQSLOD=10.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:422,0,336
2	145155414	rs13003631	G	A	434.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=0.00;SOR=5.283;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:463,36,0
2	145155789	.	A	AT	567.73	PASS	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.39;RPA=9,10;RU=T;SB=0.00;SOR=6.091;STR;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:21:60:605,60,0
2	145157858	rs35213774	A	G	2781.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-1.150e+03;SOR=1.688;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2810,202,0
2	145255210	rs12691693	T	C	2627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3730;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-1.055e+03;SOR=1.666;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2656,193,0
2	147596973	rs4411641	A	G	746.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.042;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.053;SB=-3.380e+02;SOR=0.727;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,30:65:99:775,0,1023
2	147597105	rs79692887	C	T	798.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.708;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.246;HaplotypeScore=2.8379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-0.299;SB=-5.050e+02;SOR=0.351;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,36:72:99:827,0,1148
2	148602544	.	C	CT	192.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.549;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.49;RPA=12,13;RU=T;ReadPosRankSum=1.265;SB=0.00;SOR=3.442;STR;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,10:12:8:229,8,0
2	148657589	rs2288190	A	G	560.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=0.00;SOR=5.549;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:589,45,0
2	148733548	.	T	TA	221.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.39;RPA=7,8;RU=A;ReadPosRankSum=0.754;SB=-7.300e+01;SOR=0.402;STR;VQSLOD=8.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:259,0,450
2	149240657	.	GT	G	1244.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.04;RPA=13,12;RU=T;ReadPosRankSum=2.270;SB=-3.463e+02;SOR=0.971;STR;VQSLOD=7.21;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:7,62:72:17:1282,17,0
2	149243260	rs2121344	G	A	521.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.92;SB=0.00;SOR=5.421;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:550,42,0
2	149520186	rs12622667	T	C	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.426;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.879;SB=-4.176e+01;SOR=0.116;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:206,0,300
2	149520214	rs10193313	C	A	151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=1.993;SB=-3.400e+01;SOR=0.340;VQSLOD=9.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:180,0,363
2	149633358	rs117284722	C	T	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.574;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.651;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=2.093;SB=-1.300e+02;SOR=0.330;VQSLOD=7.00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,13:32:99:365,0,582
2	149679958	rs4346318	A	T	525.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.32;SB=0.00;SOR=5.421;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:554,42,0
2	149853960	rs6738277	A	G	805.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.455;HaplotypeScore=1.4105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.497;SB=-3.190e+02;SOR=0.381;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,31:64:99:834,0,898
2	150016809	rs16826652	T	C	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=-0.976;SB=0.00;SOR=0.859;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:202,0,124
2	150325416	rs1196660	A	G	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=0.00;SOR=4.804;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
2	150427516	rs4500908	C	T	525.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=0.00;SOR=5.421;VQSLOD=8.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:554,42,0
2	150432377	rs12232959	C	G	349.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-1.653e+02;SOR=1.022;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:378,27,0
2	150432976	rs11545261	C	T	1947.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.23;SB=-1.229e+03;SOR=0.910;VQSLOD=5.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1976,141,0
2	150433128	rs11680630	C	G	1015.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.28;SB=-3.260e+02;SOR=1.688;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:78:1044,78,0
2	150435889	.	C	CAA	861.73	PASS	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;RPA=2,4;RU=A;SB=-2.831e+02;SOR=1.609;STR;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:899,57,0
2	150443689	rs4667420	C	G	991.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-5.310e+02;SOR=0.976;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1020,75,0
2	150443813	rs4667419	C	T	374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.77;SB=-1.165e+02;SOR=2.303;VQSLOD=5.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:30:403,30,0
2	151326862	rs13000209	T	C	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.000;SB=0.00;SOR=1.022;VQSLOD=10.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:204,0,164
2	151328284	rs11338446	GA	G	938.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.265;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.90;RPA=12,11;RU=A;ReadPosRankSum=-1.184;SB=-2.420e+02;SOR=1.094;STR;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,40:49:93:976,93,0
2	151331361	.	A	G	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.019;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.047;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-1.553;SB=-4.190e+02;SOR=0.976;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,29:54:99:628,0,639
2	151343988	rs2334309	A	T	1100.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.814;DB;DP=46;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.5291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=0.702;SB=-2.101e+02;SOR=1.287;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,39:45:18:1129,0,18
2	151900223	rs7589036	T	C	1889.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.00;SB=-7.670e+02;SOR=1.220;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1918,144,0
2	151900390	rs150701043	TAAAAACAAAAAC	T	1303.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;RPA=6,4;RU=AAAAAC;SB=0.00;SOR=4.804;STR;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:28:30:1341,30,0
2	152108261	rs4665119	T	G	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.559;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.591;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.362;SB=-1.830e+02;SOR=0.368;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:534,0,425
2	152109159	rs289885	C	T	1038.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.62;SB=0.00;SOR=6.593;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1067,78,0
2	152117957	rs2271813	T	C	565.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=5.267;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.811;SB=-2.100e+02;SOR=0.204;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,21:48:99:594,0,809
2	152132130	rs289834	A	G	818.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.499;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.582;SB=-4.800e+02;SOR=0.669;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,33:82:99:847,0,1388
2	152135514	rs289831	A	G	812.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.224;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=5.683;HaplotypeScore=1.6648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.967;SB=-2.500e+02;SOR=0.113;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,30:58:99:841,0,740
2	152138522	rs3771886	T	C	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.048;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=6.237;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.59;ReadPosRankSum=-0.317;SB=-4.300e+01;SOR=2.073;VQSLOD=6.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:30:99:226,0,555
2	152139271	rs10169816	C	T	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.710;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-0.229;SB=-1.890e+02;SOR=0.643;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:371,0,489
2	152139493	rs10182245	A	G	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.130;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=0.754;SB=-5.800e+01;SOR=0.818;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:276,0,322
2	152214424	rs3821322	C	T	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=1.601;SB=0.00;SOR=0.693;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:193,0,166
2	152226736	.	C	T	887.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.901;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.53;ReadPosRankSum=0.167;SB=-3.870e+02;SOR=0.916;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,34:77:99:916,0,1061
2	152266473	rs2290368	T	C	883.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-3.270e+02;SOR=1.528;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:912,69,0
2	152266731	rs2290367	T	A	707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-7.997e+01;SOR=3.500;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:736,54,0
2	152267072	rs4664045	T	G	1747.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-8.330e+02;SOR=1.262;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1776,129,0
2	152267721	rs66862523	AT	A	158.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.90;RPA=11,10;RU=T;ReadPosRankSum=1.522;SB=-1.709e+01;SOR=0.941;STR;VQSLOD=8.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,10:24:99:196,0,300
2	152273503	rs6735771	G	A	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.483;HaplotypeScore=3.0479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-0.373;SB=-1.400e+02;SOR=0.148;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:30:99:418,0,361
2	152289767	rs72860233	G	A	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.966;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.703;SB=-8.097e+01;SOR=0.129;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:339,0,276
2	152292169	rs34105266	GA	G	145.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;DB;DP=22;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.67;RPA=9,8;RU=A;ReadPosRankSum=1.144;SB=-9.732e-01;SOR=2.494;STR;VQSLOD=4.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,9:22:99:183,0,251
2	152293620	rs2444272	C	T	848.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;SB=-2.401e+02;SOR=2.124;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:877,69,0
2	152295108	.	TTAATG	T	373.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.39;ReadPosRankSum=0.437;SB=0.00;SOR=0.859;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:411,0,356
2	152300019	.	C	G	751.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.722;DP=44;Dels=0.00;ExcessHet=3.0103;FS=5.427;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.09;ReadPosRankSum=-0.308;SB=-1.330e+02;SOR=1.765;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,25:44:99:780,0,615
2	152303171	rs2432941	G	A	960.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-1.165e+02;SOR=3.767;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:989,75,0
2	152311570	rs2444263	G	A	2300.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=-1.170e+03;SOR=1.011;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2329,172,0
2	152314547	.	C	CA	775.73	PASS	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;RPA=3,4;RU=A;SB=0.00;SOR=6.358;STR;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:25:69:813,69,0
2	152315549	rs2444260	G	T	1540.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.11;SB=-3.677e+01;SOR=6.138;VQSLOD=3.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1569,120,0
2	152317669	rs116443402	G	A	396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-1.591;SB=-1.730e+02;SOR=0.776;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,17:30:99:425,0,360
2	152320118	rs2123465	G	A	1813.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-8.680e+02;SOR=1.077;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1842,138,0
2	152322095	rs2444257	A	T	1964.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-1.021e+03;SOR=0.914;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1993,150,0
2	152325288	rs115283798	C	T	621.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.551;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.093;SB=-2.250e+02;SOR=0.538;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,24:55:99:650,0,876
2	152331418	rs1065177	C	G	1222.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.44;SB=-6.040e+02;SOR=1.455;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:90:1251,90,0
2	152346979	rs1061305	T	C	851.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.882;HaplotypeScore=4.9756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.047;SB=-5.350e+02;SOR=0.591;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,35:70:99:880,0,974
2	152348842	rs2288193	T	A	1055.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.191;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-0.914;SB=-6.380e+02;SOR=0.793;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,40:80:99:1084,0,1129
2	152349026	rs2288195	G	A	1063.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-3.200e+02;SOR=2.303;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1092,81,0
2	152349798	rs115730804	G	A	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=0.926;SB=-3.677e+01;SOR=0.412;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:319,0,176
2	152350462	rs4664455	T	C	1260.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-3.250e+02;SOR=2.554;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1289,93,0
2	152352843	rs7575451	C	G	1888.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-1.162e+03;SOR=0.859;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1917,138,0
2	152353395	rs10497081	T	G	624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.423;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.026;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=1.139;SB=-6.500e+01;SOR=1.697;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,20:34:99:653,0,396
2	152353908	rs189541337	A	T	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=1.027;SB=-1.765e+00;SOR=2.419;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:232,0,151
2	152358042	rs115394251	T	C	511.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.103;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-1.349;SB=-1.060e+02;SOR=1.022;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:540,0,369
2	152359276	.	A	AT	116.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;DP=27;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.49;RPA=13,14;RU=T;ReadPosRankSum=1.522;SB=-3.220e+01;SOR=0.078;STR;VQSLOD=4.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,8:27:99:154,0,299
2	152369117	rs13023600	T	C	1050.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.53;SB=-3.876e+01;SOR=5.283;VQSLOD=2.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1079,81,0
2	152370052	rs16830128	A	G	816.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.181;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.393;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=0.556;SB=-1.760e+02;SOR=1.096;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,28:49:99:845,0,531
2	152374800	rs16830136	G	A	1134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-0.814;SB=-6.440e+02;SOR=0.684;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,45:88:99:1163,0,1146
2	152382329	rs7597735	G	A	1051.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-4.176e+01;SOR=5.211;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1080,81,0
2	152382454	rs6721666	C	G	1930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.234;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.047;SB=-7.450e+02;SOR=0.681;VQSLOD=8.04;culprit=DP	GT:AD:DP:GQ:PL	0/1:68,76:144:99:1959,0,1873
2	152382859	rs2288197	A	G	777.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.209;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=9.255;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=-0.305;SB=-3.960e+02;SOR=0.176;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,35:71:99:806,0,1054
2	152383913	rs2288198	T	C	1079.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9970;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=-5.350e+02;SOR=1.044;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1108,81,0
2	152387553	rs4664475	T	C	922.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.353;SB=-5.370e+02;SOR=0.681;VQSLOD=9.92;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,39:71:99:951,0,801
2	152388228	rs60806638	G	C	1033.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=4.942;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-0.673;SB=-5.430e+02;SOR=0.316;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,40:71:99:1062,0,883
2	152388415	rs56026241	AT	A	419.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;RPA=2,1;RU=T;ReadPosRankSum=1.061;SB=-8.000e+01;SOR=0.752;STR;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,14:36:99:457,0,832
2	152394534	rs3732310	T	G	925.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.476;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-0.367;SB=-2.720e+02;SOR=0.651;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,33:76:99:954,0,1321
2	152396726	.	T	TA	1005.73	PASS	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;RPA=7,8;RU=A;SB=-6.497e+01;SOR=4.804;STR;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1043,102,0
2	152398045	rs16830192	G	C	1106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.892;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=1.739;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-1.021;SB=-6.620e+02;SOR=0.836;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,46:87:99:1135,0,1092
2	152402171	rs4664055	C	A	676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.37;SB=-4.076e+01;SOR=4.514;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:705,54,0
2	152403014	rs4664486	C	T	646.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.651;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=1.282;SB=-3.060e+02;SOR=0.495;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:675,0,736
2	152403071	rs34524403	C	CT	124.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-0.204;POSITIVE_TRAIN_SITE;QD=8.89;RPA=18,19;RU=T;ReadPosRankSum=-1.098;SB=-1.204e+01;SOR=1.609;STR;VQSLOD=3.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,12:21:7:161,0,7
2	152404218	rs2288200	T	A	1171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.712;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=0.447;SB=-6.240e+02;SOR=0.590;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:71,46:117:99:1200,0,1872
2	152404294	rs2288201	C	T	2068.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-4.710e+02;SOR=2.797;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2097,157,0
2	152405993	rs73967562	C	A	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=1.524;SB=0.00;SOR=0.446;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:156,0,229
2	152409416	rs2288203	C	T	928.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.195;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.559;SB=-2.940e+02;SOR=0.307;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,34:62:99:957,0,722
2	152409809	rs4575719	C	A	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=7.830;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-1.337;SB=-7.597e+01;SOR=0.034;VQSLOD=6.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:14:99:163,0,280
2	152410732	rs6731486	A	G	564.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.99;SB=0.00;SOR=5.549;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:593,45,0
2	152416932	rs2288205	C	T	345.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.847;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.87;ReadPosRankSum=1.928;SB=-1.860e+02;SOR=0.741;VQSLOD=8.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,16:39:99:374,0,592
2	152417311	.	T	TC	806.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.22;RPA=3,4;RU=C;ReadPosRankSum=0.882;SB=-2.750e+02;SOR=0.551;STR;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,25:59:99:844,0,954
2	152417681	rs4364020	G	A	556.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.704;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=0.543;SB=-3.120e+02;SOR=0.892;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,23:39:99:585,0,418
2	152419038	rs2288209	C	T	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.833;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=-0.502;SB=-2.402e+01;SOR=0.653;VQSLOD=9.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,12:39:99:320,0,901
2	152421937	rs7602715	A	G	2340.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-1.011e+03;SOR=1.670;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:80:99:2369,169,0
2	152422076	rs2288210	C	G	3056.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.96;SB=-1.600e+03;SOR=0.990;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3085,226,0
2	152424463	rs73967566	G	A	272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=0.089;SB=-4.176e+01;SOR=0.269;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:301,0,274
2	152424933	.	T	TA	331.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DP=24;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;RPA=13,14;RU=A;ReadPosRankSum=-1.661;SB=-1.060e+02;SOR=1.493;STR;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,18:24:36:369,0,36
2	152425337	rs77884575	G	A	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=2.109;SB=0.00;SOR=0.569;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:201,0,240
2	152427249	rs7568873	A	G	879.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-3.540e+02;SOR=1.765;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:66:908,66,0
2	152432481	rs3771901	G	A	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.756;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-2.190;SB=-9.000e+01;SOR=0.515;VQSLOD=7.50;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,7:14:99:221,0,205
2	152432811	rs35227368	A	T	1130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.226;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=3.317;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.689;SB=-3.150e+02;SOR=1.171;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,43:84:99:1159,0,1081
2	152467001	rs11902616	C	T	706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.279;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.484;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-0.275;SB=-8.800e+01;SOR=1.268;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,23:51:99:735,0,802
2	152475938	rs10186656	T	G	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=-1.235;SB=0.00;SOR=0.223;VQSLOD=9.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:94:94,0,249
2	152476028	NEB	C	G	819.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=14.237;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.16;ReadPosRankSum=-0.781;SB=-1.350e+02;SOR=3.086;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,26:37:99:848,0,310
2	152476130	rs6717213	C	T	755.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.042;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-1.559;SB=-3.980e+02;SOR=0.789;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,31:76:99:784,0,1329
2	152481977	rs10186482	A	G	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-0.729;SB=-1.765e+00;SOR=1.136;VQSLOD=9.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:203,0,370
2	152490074	.	TCTTAA	T	2000.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.419;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.47;ReadPosRankSum=2.286;SB=-2.930e+02;SOR=0.787;VQSLOD=6.59;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:37,28:65:99:2038,0,2836
2	152490219	rs6709886	A	G	4449.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-2.387e+03;SOR=0.904;VQSLOD=4.96;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,144:145:99:4478,334,0
2	152490458	rs6710212	A	G	2202.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-1.258e+03;SOR=0.864;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2231,166,0
2	152496526	rs6713162	A	G	1161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.143;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.465;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=1.188;SB=-3.050e+02;SOR=1.193;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,40:66:99:1190,0,592
2	152499580	rs4664494	C	T	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.909;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=0.568;SB=0.00;SOR=1.765;VQSLOD=10.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:341,0,120
2	152500019	rs28375835	G	A	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.349;SB=0.00;SOR=0.551;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:156,0,204
2	152500449	rs13013209	C	G	1035.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.530;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=1.410;SB=-5.040e+02;SOR=0.337;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,32:63:99:1064,0,900
2	152511778	rs10930723	A	C	399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.997;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.735;SB=-1.410e+02;SOR=0.693;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:428,0,445
2	152520027	rs12620077	A	G	532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.270;HaplotypeScore=2.4328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.128;SB=-1.430e+02;SOR=0.182;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,22:39:99:561,0,490
2	152521096	rs10170273	C	T	1160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.796;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.422;SB=-6.720e+02;SOR=0.474;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,44:85:99:1189,0,1283
2	152521539	rs12328501	A	G	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=0.086;SB=0.00;SOR=0.693;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:309,0,265
2	152522556	rs4664496	T	C	747.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.487;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-1.394;SB=0.00;SOR=1.121;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,22:37:99:776,0,486
2	152525471	rs58903550	A	G	996.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.180;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.188;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=0.325;SB=-2.720e+02;SOR=0.500;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,36:64:99:1025,0,801
2	152527572	rs7426114	C	T	780.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.081;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.853;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=0.130;SB=-4.510e+02;SOR=0.582;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,33:81:99:809,0,1321
2	152527608	rs34577613	C	T	1238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.523;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.982;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-0.570;SB=-7.610e+02;SOR=0.407;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1267,0,821
2	152531077	rs6711382	A	G	1115.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.762;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.605;SB=-7.060e+02;SOR=0.747;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,46:109:99:1144,0,1673
2	152531781	rs12618063	C	A	485.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.14;ReadPosRankSum=1.213;SB=-2.950e+02;SOR=0.721;VQSLOD=8.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,23:68:99:514,0,1252
2	152536498	rs6735208	T	A	1844.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=1.522;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=-0.941;SB=-7.880e+02;SOR=0.958;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,69:123:99:1873,0,1354
2	152550727	rs74532673	T	C	255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.512;SB=-1.765e+00;SOR=1.802;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:284,0,235
2	152552062	rs6433569	A	C	1003.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.983;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.849;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=1.093;SB=-5.500e+02;SOR=0.567;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,41:83:99:1032,0,1054
2	152566433	rs12464543	A	G	458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.160;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.370;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-0.442;SB=-1.290e+02;SOR=1.063;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,16:40:99:487,0,644
2	152573902	rs376503933	A	AGGC	2036.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;DB;DP=80;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.78;RPA=1,2;RU=GGC;ReadPosRankSum=-0.088;SB=-5.740e+02;SOR=0.542;STR;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,37:80:99:2074,0,2315
2	152573981	rs4611637	A	G	1187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.634;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=5.924;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.566;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-0.897;SB=-5.660e+02;SOR=1.182;VQSLOD=0.623;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:61,51:113:99:1216,0,1714
2	152581866	rs4300824	T	C	673.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.790;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.942;SB=-2.030e+02;SOR=0.693;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,25:50:99:702,0,735
2	152584153	rs4664499	A	C	1251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.536;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=2.695;HaplotypeScore=2.5165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-2.258;SB=-6.240e+02;SOR=0.454;VQSLOD=7.51;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:56,49:105:99:1280,0,1514
2	152684704	rs60330979	A	AC	515.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DB;DP=33;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.19;RPA=9,10;RU=C;ReadPosRankSum=1.334;SB=-2.690e+02;SOR=0.269;STR;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:33:99:553,0,317
2	152954985	rs34347895	G	C	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=1.188;SB=-3.200e+01;SOR=0.941;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:153,0,244
2	152988610	.	C	CT	2817.73	PASS	AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.89;RPA=1,2;RU=T;SB=-1.393e+03;SOR=0.758;STR;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:65:99:2855,187,0
2	152991915	rs3835745	AT	A	282.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQ0=0;MQRankSum=0.849;POSITIVE_TRAIN_SITE;QD=20.20;RPA=3,2;RU=T;ReadPosRankSum=-2.258;SB=0.00;SOR=1.329;STR;VQSLOD=3.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,9:14:99:320,0,148
2	152992165	rs202193534	C	CAATA	1395.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;DB;DP=40;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=28.29;RPA=1,2;RU=AATA;ReadPosRankSum=0.752;SB=-1.830e+02;SOR=1.402;STR;VQSLOD=4.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,23:40:99:1433,0,834
2	152992237	rs12612031	G	A	403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=0.00;SOR=4.977;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:432,33,0
2	153000337	rs12617139	T	A	682.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.14;SB=-1.603e+02;SOR=2.531;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:711,54,0
2	153001359	rs142275525	GAT	G	2043.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.889;DB;DP=81;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=0.863;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.55;RPA=2,1;RU=AT;ReadPosRankSum=0.054;SB=-6.440e+02;SOR=0.556;STR;VQSLOD=0.300;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,47:81:99:2081,0,1533
2	153006452	rs13003423	G	C	875.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.398;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=-1.490;SB=0.00;SOR=1.347;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,26:41:99:904,0,486
2	153247069	rs3890370	G	A	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=1.266;SB=-1.080e+02;SOR=0.693;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:367,0,119
2	153378459	rs4664114	T	C	1579.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.90;SB=-9.920e+02;SOR=0.941;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1608,114,0
2	153378574	rs4664592	A	G	928.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-2.471e+02;SOR=2.303;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:957,72,0
2	153405594	rs1155779	G	A	2038.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-1.097e+03;SOR=1.117;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2067,150,0
2	153415170	rs6705427	A	C	611.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.08;SB=0.00;SOR=5.670;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:640,48,0
2	153415234	rs66477643	T	TG	1672.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-2.361e+02;SOR=3.417;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1710,129,0
2	153415244	.	T	C	1321.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.035;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;MQRankSum=0.335;QD=31.47;ReadPosRankSum=-0.371;SB=-2.001e+02;SOR=2.030;VQSLOD=1.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,41:43:65:1350,65,0
2	153415376	rs6434098	T	G	3325.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8906;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-1.997e+03;SOR=0.751;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3354,247,0
2	153415588	rs6434099	T	C	579.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.15;SB=0.00;SOR=5.549;VQSLOD=8.00;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,15:15:45:608,45,0
2	153417325	rs6713836	A	G	350.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-1.205e+02;SOR=1.981;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:379,27,0
2	153431964	rs56101947	CAA	C	328.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;RPA=11,9;RU=A;SB=-7.497e+01;SOR=2.303;STR;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:30:366,30,0
2	153435288	rs12693407	G	A	435.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=0.00;SOR=5.136;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:464,36,0
2	153463984	rs72210499	TACAC	T	913.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.59;RPA=18,16;RU=AC;SB=-6.076e+01;SOR=4.174;STR;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:23:48:951,48,0
2	153478931	rs7609122	T	C	538.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=0.00;SOR=5.421;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:567,42,0
2	153481943	rs2346532	T	C	1195.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-2.910e+02;SOR=2.494;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1224,90,0
2	153484685	rs3811570	G	A	443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-7.597e+01;SOR=2.985;VQSLOD=5.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:472,36,0
2	153492910	rs1561267	G	T	1847.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-6.620e+02;SOR=1.823;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1876,138,0
2	153497168	rs1465818	C	T	1113.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-3.860e+02;SOR=2.012;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1142,84,0
2	153514583	rs6713779	G	C	824.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-3.300e+02;SOR=1.609;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:853,63,0
2	153519524	rs1036526	A	G	1376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-4.010e+02;SOR=2.093;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1405,102,0
2	153520782	rs3762507	A	G	1203.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.39;SB=-1.931e+02;SOR=3.321;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1232,90,0
2	153520819	rs3762506	C	A	650.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=-6.997e+01;SOR=3.611;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:679,51,0
2	153527017	rs2118377	C	T	432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=0.00;SOR=5.136;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:461,36,0
2	153535670	rs10166987	C	T	1490.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-7.480e+02;SOR=0.784;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1519,117,0
2	153549814	rs10172024	G	C	576.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-4.276e+01;SOR=4.174;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:605,45,0
2	153572438	rs2346548	C	T	1212.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=-2.271e+02;SOR=2.964;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:93:1241,93,0
2	153573528	rs4664605	C	T	604.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-1.185e+02;SOR=2.948;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:20:48:633,48,0
2	153576264	.	GAA	G	259.73	PASS	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.64;RPA=24,22;RU=A;SB=-7.894e+00;SOR=4.174;STR;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:34:292,34,0
2	153576279	.	A	C	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.85;ReadPosRankSum=0.936;SB=0.00;SOR=3.126;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,13:15:38:431,0,38
2	153576580	rs67014385	A	ATTTC	2766.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.714;POSITIVE_TRAIN_SITE;QD=34.31;ReadPosRankSum=-0.491;SB=-2.463e+02;SOR=1.117;VQSLOD=3.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,46:52:99:2804,0,164
2	153576599	rs13418460	A	C	794.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.49;ReadPosRankSum=-0.892;SB=-8.197e+01;SOR=1.022;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,25:30:63:823,0,63
2	153576607	rs13430085	G	A	593.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.75;ReadPosRankSum=-1.820;SB=-4.076e+01;SOR=1.022;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,21:25:94:622,0,94
2	153577013	rs9646744	G	A	1476.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-8.370e+02;SOR=0.735;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1505,114,0
2	154801196	rs72865049	A	G	1048.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.869;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=7.805;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=0.961;SB=-5.500e+01;SOR=2.039;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,33:72:99:1077,0,1069
2	155265623	rs1405936	G	A	1440.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-4.540e+02;SOR=2.160;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1469,108,0
2	155295380	rs697647	T	C	418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=0.00;SOR=4.977;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:447,33,0
2	155306885	rs697648	C	T	1389.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-3.200e+02;SOR=2.726;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1418,105,0
2	155555165	rs372814428	A	C	71.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=9.859;HaplotypeScore=8.1903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.78;ReadPosRankSum=1.967;SB=-2.657e-01;SOR=3.556;VQSLOD=3.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:100,0,154
2	155555195	.	T	TC	407.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;DP=31;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-1.752;POSITIVE_TRAIN_SITE;QD=13.59;RPA=5,6;RU=C;ReadPosRankSum=-0.228;SB=-3.900e+01;SOR=1.821;STR;VQSLOD=0.420;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,15:31:99:445,0,424
2	157183211	rs35479735	TC	T	2275.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;RPA=3,2;RU=C;SB=-5.520e+02;SOR=2.387;STR;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2313,169,0
2	157183635	rs834834	C	T	470.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-7.797e+01;SOR=2.985;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:499,39,0
2	157189011	rs834836	G	C	1022.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-6.180e+02;SOR=0.941;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1051,75,0
2	157370018	.	GT	G	406.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;DP=50;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.17;RPA=14,13;RU=T;ReadPosRankSum=1.245;SB=-2.120e+02;SOR=0.439;STR;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,23:50:99:444,0,269
2	157406249	rs2116665	G	A	4080.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.63;SB=-1.977e+03;SOR=1.241;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,129:129:99:4109,301,0
2	157406296	rs2116664	A	C	3452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.53;SB=-1.013e+03;SOR=2.256;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3481,253,0
2	157425801	rs67602053	A	G	682.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.303;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.876;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=-0.198;SB=-1.410e+02;SOR=1.697;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,22:34:99:711,0,252
2	157426114	rs147508905	ACTGGCAGCAAT	A	1204.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQ0=0;MQRankSum=1.381;QD=12.17;ReadPosRankSum=0.226;SB=-2.690e+02;SOR=0.765;VQSLOD=1.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,10:31:99:1242,0,2336
2	157427593	rs1469652	T	C	673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-1.205e+02;SOR=2.948;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:702,54,0
2	157427837	rs1469651	C	A	1270.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.35;SB=-3.960e+02;SOR=2.012;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:96:1299,96,0
2	157427850	rs1469650	G	A	1237.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.85;SB=-2.800e+02;SOR=2.584;VQSLOD=7.55;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,34:34:93:1266,93,0
2	158157361	rs3214040	C	T	2863.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-1.476e+03;SOR=0.883;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2892,214,0
2	158162475	rs3214039	C	T	572.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=0.00;SOR=5.670;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:601,48,0
2	158165004	rs6728956	C	T	349.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=0.00;SOR=4.804;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:378,30,0
2	158180784	.	CA	C	68.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DP=27;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.64;RPA=16,15;RU=A;ReadPosRankSum=-0.189;SB=-5.150e-01;SOR=2.093;STR;VQSLOD=4.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,9:27:99:106,0,356
2	158275111	.	T	TA	239.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.66;RPA=17,18;RU=A;ReadPosRankSum=1.502;SB=-3.020e+01;SOR=0.193;STR;VQSLOD=7.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,17:45:99:277,0,252
2	158284056	rs155613	C	T	746.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-1.205e+02;SOR=3.258;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:775,60,0
2	158291188	rs11904180	A	C	423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.49;SB=-2.800e+02;SOR=0.693;VQSLOD=4.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:452,33,0
2	158395079	rs7576514	C	G	671.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.086;HaplotypeScore=3.4836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-0.794;SB=-1.960e+02;SOR=0.916;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,25:63:99:700,0,1056
2	158400908	rs6728987	C	T	450.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.197;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-1.368;SB=-6.500e+01;SOR=0.730;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:479,0,595
2	158401137	rs10432556	T	C	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.415;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=8.203;HaplotypeScore=2.6817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-2.535;SB=-2.530e+02;SOR=0.120;VQSLOD=6.08;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,26:49:99:628,0,724
2	158626980	rs1146031	C	T	2607.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-1.286e+03;SOR=1.233;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2636,193,0
2	158636910	rs2227861	G	A	2783.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-1.264e+03;SOR=1.402;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2812,205,0
2	158637081	rs201453468	G	A	756.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=5.065;HaplotypeScore=8.8427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-0.499;SB=-3.860e+02;SOR=0.294;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,30:70:99:785,0,1117
2	158637137	.	A	G	1207.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;DP=51;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.16;ReadPosRankSum=0.129;SB=-4.440e+02;SOR=0.739;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,45:50:13:1236,0,13
2	158655883	.	C	CAA	584.73	PASS	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.40;RPA=11,13;RU=A;SB=-8.297e+01;SOR=3.383;STR;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:18:50:622,50,0
2	158818797	rs11686202	A	G	76.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.68;ReadPosRankSum=-1.133;SB=-2.801e+01;SOR=0.892;VQSLOD=9.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:99:105,0,148
2	158974155	rs10176046	T	G	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-0.175;SB=0.00;SOR=0.551;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:167,0,205
2	158978178	rs10804389	C	G	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-1.071;SB=-5.150e-01;SOR=2.655;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:308,0,360
2	159028800	rs2222390	A	G	1149.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.82;SB=-1.971e+02;SOR=2.899;VQSLOD=7.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1178,87,0
2	159035344	.	A	AT	250.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;DP=30;ExcessHet=3.0103;FS=6.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.95;RPA=8,9;RU=T;ReadPosRankSum=1.464;SB=-3.500e+01;SOR=2.262;STR;VQSLOD=4.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,12:30:99:288,0,358
2	159077019	rs958671	A	C	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.82;ReadPosRankSum=0.339;SB=-7.800e+01;SOR=1.347;VQSLOD=7.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,11:23:99:208,0,218
2	159166069	rs7559772	T	C	1870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=-5.030e+02;SOR=2.345;VQSLOD=6.34;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1899,138,0
2	159195225	rs11686762	T	G	653.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.895;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=-0.250;SB=-4.076e+01;SOR=0.330;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,20:35:99:682,0,484
2	159312733	rs1111212	C	T	1307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=0.736;SB=-6.720e+02;SOR=0.684;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,46:74:99:1336,0,830
2	159312776	rs3796107	G	T	965.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.459;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-0.024;SB=-5.600e+02;SOR=0.682;VQSLOD=8.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,39:92:99:994,0,1641
2	159312777	rs3796106	A	T	972.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-0.144;SB=-5.180e+02;SOR=0.715;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,39:91:99:1001,0,1573
2	159434492	rs2356188	G	A	465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.11;SB=-1.115e+02;SOR=2.584;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:494,36,0
2	159434500	rs2356189	A	G	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-0.979;SB=-7.000e+01;SOR=0.976;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:282,0,226
2	159434727	rs10933494	T	G	517.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.027;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.369;SB=-2.820e+02;SOR=0.782;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:546,0,434
2	159434802	rs72184107	ATC	A	430.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;DB;DP=22;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.58;RPA=3,2;RU=TC;ReadPosRankSum=0.395;SB=-8.100e+01;SOR=1.675;STR;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:468,0,482
2	159459863	rs2051947	A	G	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=-0.628;SB=0.00;SOR=1.022;VQSLOD=10.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:244,0,163
2	159477439	rs147357610	CTT	C	1249.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.53;RPA=6,4;RU=T;ReadPosRankSum=2.719;SB=-1.440e+02;SOR=0.922;STR;VQSLOD=5.35;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,35:64:99:1287,0,1089
2	159481339	.	A	G	914.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.006;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.021;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-0.747;SB=-2.620e+02;SOR=0.977;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,35:74:99:943,0,1071
2	159498940	rs2253537	A	T	598.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=0.00;SOR=5.670;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:627,48,0
2	159520085	rs3771679	G	C	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=0.180;SB=-5.800e+01;SOR=1.119;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,9:27:99:256,0,579
2	159522879	rs2248854	C	G	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.900;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.534;SB=-3.501e+01;SOR=0.495;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:243,0,322
2	159525960	rs72942786	A	G	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-0.175;SB=-4.276e+01;SOR=0.074;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:141,0,173
2	159530651	rs2711034	A	T	871.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.422;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=0.809;SB=-1.280e+02;SOR=1.102;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,29:55:99:900,0,747
2	159534889	rs2711040	C	T	68.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.25;ReadPosRankSum=-0.381;SB=-9.732e-01;SOR=1.371;VQSLOD=9.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:97:97,0,222
2	159651734	rs925781	A	G	634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=0.00;SOR=5.892;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:663,54,0
2	159652231	rs2280184	G	T	455.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-4.276e+01;SOR=4.047;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:484,39,0
2	159661077	rs2271663	C	T	903.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.28;SB=0.00;SOR=6.439;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:932,72,0
2	159663599	rs9869	T	C	1174.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.97;SB=-6.620e+02;SOR=1.127;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:90:1203,90,0
2	159719031	rs34995873	A	G	1157.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=7;POSITIVE_TRAIN_SITE;QD=25.17;SB=-5.770e+02;SOR=1.096;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:6,40:46:84:1186,84,0
2	159731466	rs10186922	A	G	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-0.573;SB=-1.670e+02;SOR=0.765;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,14:35:99:352,0,513
2	159731808	rs13420835	G	A	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-1.501;SB=-1.080e+02;SOR=0.330;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:185,0,102
2	159954420	rs13414916	C	T	1211.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3620;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-5.330e+02;SOR=1.552;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:40:93:1240,93,0
2	160019863	rs12466551	A	G	2245.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-1.312e+03;SOR=0.963;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2274,163,0
2	160027587	.	G	GC	718.73	PASS	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;RPA=1,2;RU=C;SB=-8.297e+01;SOR=3.383;STR;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:756,51,0
2	160033174	rs759034	A	G	443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.54;SB=0.00;SOR=5.136;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:472,36,0
2	160034919	rs4665031	A	G	360.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=0.00;SOR=4.804;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:389,30,0
2	160035207	rs6748288	T	C	3160.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-1.932e+03;SOR=0.896;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3189,238,0
2	160073895	rs4665042	G	C	452.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=-0.180;SB=-1.610e+02;SOR=0.165;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,18:29:99:481,0,366
2	160075886	.	G	GC	1616.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DP=124;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.36;RPA=3,4;RU=C;ReadPosRankSum=-1.371;SB=-6.640e+02;SOR=0.783;STR;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:71,50:124:99:1654,0,2490
2	160076077	rs2303335	T	A	539.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=1.328;SB=-1.870e+02;SOR=0.994;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,19:55:99:568,0,1121
2	160082354	rs12692544	C	T	2159.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-6.750e+02;SOR=2.035;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2188,169,0
2	160082364	rs34344829	A	G	729.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.701;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.403;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-0.970;SB=-3.080e+02;SOR=0.392;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,26:60:99:758,0,963
2	160082384	rs13419975	T	A	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-0.889;SB=-1.890e+02;SOR=0.568;VQSLOD=8.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,22:54:99:560,0,882
2	160084224	rs2042494	G	A	556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.97;SB=0.00;SOR=5.549;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:585,45,0
2	160084263	rs2042495	A	G	705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-2.401e+02;SOR=2.030;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:734,57,0
2	160084473	rs2288110	A	C	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.100;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=7.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-1.946;SB=-1.210e+02;SOR=2.133;VQSLOD=6.66;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,18:37:99:503,0,493
2	160084534	rs2288111	A	G	539.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-1.781e+02;SOR=1.863;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:568,42,0
2	160085506	rs72955954	A	G	620.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.111;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.225;SB=-8.400e+01;SOR=0.752;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,20:39:99:649,0,598
2	160086653	rs4664276	C	T	1479.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-0.061;SB=-7.150e+02;SOR=0.682;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,50:117:99:1508,0,2070
2	160086654	rs55738533	A	G	1484.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.539;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.042;SB=-7.510e+02;SOR=0.630;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,49:116:99:1513,0,1954
2	160086692	rs3821296	A	G	1072.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.454;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=-0.209;SB=-5.840e+02;SOR=0.670;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:69,45:114:99:1101,0,2068
2	160087535	rs3821301	T	G	1467.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-4.770e+02;SOR=2.110;VQSLOD=6.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1496,108,0
2	160112881	rs7591849	G	T	733.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.030;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.462;SB=-2.630e+02;SOR=0.936;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,27:65:99:762,0,1127
2	160114437	rs3213715	G	A	939.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.674;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.434;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-0.288;SB=-1.280e+02;SOR=1.153;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:56:99:968,0,741
2	160116281	rs4665052	A	G	159.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.242;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.41;ReadPosRankSum=1.016;SB=-7.800e+01;SOR=0.627;VQSLOD=7.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:188,0,351
2	160132196	.	A	AC	1198.73	PASS	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;RPA=7,8;RU=C;SB=-3.670e+02;SOR=1.819;STR;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:38:99:1236,102,0
2	160136337	rs174264	G	A	304.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-2.001e+02;SOR=0.693;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:333,24,0
2	160176943	rs174229	A	C	1793.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-5.550e+02;SOR=2.221;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1822,135,0
2	160182173	.	G	A	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.422;DP=23;Dels=0.00;ExcessHet=3.0103;FS=7.144;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-0.258;SB=-3.500e+01;SOR=1.781;VQSLOD=5.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:23:99:198,0,411
2	160193370	rs2287634	T	A	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.349;SB=0.00;SOR=0.551;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:161,0,205
2	160206174	.	T	C	721.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.044;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.51;ReadPosRankSum=0.110;SB=-6.900e+01;SOR=1.352;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,23:37:99:750,0,389
2	160243183	rs918351	T	A	279.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.149;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.643;SB=-4.076e+01;SOR=0.188;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:308,0,319
2	160243184	rs918350	A	T	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.681;SB=-4.176e+01;SOR=0.188;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:302,0,342
2	160585740	rs3821299	C	A	581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=0.511;SB=0.00;SOR=2.737;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,18:22:86:610,0,86
2	160604812	rs1427329	C	T	1457.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.076;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.673;SB=-9.170e+02;SOR=0.667;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,57:121:99:1486,0,1646
2	160605268	rs1365803	T	C	3274.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;SB=-1.906e+03;SOR=0.734;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3303,244,0
2	160609162	rs1365802	T	C	61.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.18;ReadPosRankSum=-0.536;SB=-1.765e+00;SOR=0.836;VQSLOD=8.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:90:90,0,218
2	160621354	.	G	GT	115.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.27;RPA=11,12;RU=T;ReadPosRankSum=1.324;SB=0.00;SOR=0.693;STR;VQSLOD=9.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,7:17:99:153,0,117
2	160637324	rs2303551	A	G	1076.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-1.195e+02;SOR=3.912;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1105,81,0
2	160639970	rs2114626	T	C	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.970;SB=-3.120e+02;SOR=0.641;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,26:53:99:636,0,808
2	160663678	rs7566887	T	C	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.323;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.23;ReadPosRankSum=1.677;SB=-8.300e+01;SOR=1.417;VQSLOD=7.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,11:34:99:274,0,555
2	160664907	rs2556088	T	G	862.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.797;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.459;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-1.523;SB=-4.920e+02;SOR=1.172;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,37:64:99:891,0,662
2	160672127	rs2729700	A	T	836.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.366;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.866;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-1.558;SB=-6.200e+01;SOR=1.315;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:865,0,706
2	160676427	rs12692566	C	A	527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=9.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-0.259;SB=-5.300e+01;SOR=2.775;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,17:34:99:556,0,452
2	160676445	rs60586916	A	AT	317.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DB;DP=30;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;RPA=6,7;RU=T;ReadPosRankSum=-0.690;SB=-4.800e+01;SOR=2.049;STR;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:30:99:355,0,322
2	160688351	rs6755783	C	T	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-0.693;SB=-4.176e+01;SOR=0.138;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:297,0,421
2	160708645	rs2162500	C	G	795.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-0.439;SB=-2.970e+02;SOR=0.830;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:824,0,715
2	160708931	rs202164612	TTG	T	72.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=0.912;QD=4.04;ReadPosRankSum=0.091;SB=-2.179e+01;SOR=0.387;VQSLOD=1.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,11:20:99:110,0,203
2	160710216	rs41264211	A	G	865.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.579;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=1.716;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=0.113;SB=-4.450e+02;SOR=0.886;VQSLOD=7.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:61,34:95:99:894,0,1471
2	160710922	rs2729705	T	C	1065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.871;SB=-5.050e+02;SOR=0.782;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,39:87:99:1094,0,1217
2	160711045	rs3951216	G	C	833.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=6.355;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-1.978;SB=-1.950e+02;SOR=1.689;VQSLOD=6.06;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:25,30:55:99:862,0,694
2	160711248	rs975491	T	C	743.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-2.750e+02;SOR=1.609;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:772,57,0
2	160711556	rs975490	T	G	1307.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-5.850e+02;SOR=1.508;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:96:1336,96,0
2	160729134	rs1397705	A	C	1560.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-4.130e+02;SOR=2.608;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1589,114,0
2	160729186	rs10168271	T	C	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.839;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=1.232;SB=-3.600e+01;SOR=0.610;VQSLOD=9.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:311,0,373
2	160731716	rs2271377	C	G	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=1.255;SB=-1.765e+00;SOR=2.030;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:247,0,202
2	160737495	rs2729712	A	C	510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-4.276e+01;SOR=3.912;VQSLOD=7.87;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:39:539,39,0
2	160737560	rs2729711	G	T	915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-1.931e+02;SOR=2.753;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:944,72,0
2	160743040	rs2271381	T	A	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.928;SB=-6.200e+01;SOR=0.821;VQSLOD=9.33;culprit=SOR	GT:AD:DP:GQ:PL	0/1:15,12:27:99:339,0,449
2	160805993	rs6726923	C	G	419.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-7.797e+01;SOR=2.985;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:448,36,0
2	160807742	rs952184	A	T	975.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-2.710e+02;SOR=2.303;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1004,75,0
2	160808075	rs3828323	C	T	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.292;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=-0.967;SB=-7.000e+01;SOR=0.392;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:266,0,420
2	160833188	rs2715918	A	G	2145.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.3737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-9.750e+02;SOR=1.308;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2174,166,0
2	160840370	rs5835784	AC	A	498.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.78;RPA=4,3;RU=C;SB=-4.276e+01;SOR=3.912;STR;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:536,42,0
2	160843623	rs6757188	T	C	787.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.613;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.781;SB=-4.450e+02;SOR=0.732;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,32:68:99:816,0,877
2	160872989	rs10563068	GGT	G	1552.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DB;DP=47;ExcessHet=3.0103;FS=10.366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=0.808;SB=-4.979e+01;SOR=6.043;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,41:47:99:1590,107,0
2	160873021	rs2715939	G	A	2423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.9905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-3.410e+02;SOR=2.964;VQSLOD=6.65;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2452,190,0
2	160873270	rs2667040	A	G	2406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-6.180e+02;SOR=2.448;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2435,178,0
2	160873294	.	T	TA	1361.73	PASS	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;RPA=8,9;RU=A;SB=-3.600e+02;SOR=2.110;STR;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:50:99:1399,138,0
2	160873397	rs1858295	T	C	605.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-2.790e+02;SOR=1.402;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:45:634,45,0
2	160876827	rs1511213	A	G	492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=0.00;SOR=5.283;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:521,39,0
2	160879259	rs33985939	C	T	711.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=0.314;SB=-4.230e+02;SOR=0.919;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,30:71:99:740,0,1112
2	160885418	rs35771982	G	C	1194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=7.246;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.170;SB=-7.790e+02;SOR=0.243;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,46:87:99:1223,0,1203
2	160885442	rs3749117	T	C	1123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.943;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.700;HaplotypeScore=3.4184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-0.094;SB=-7.030e+02;SOR=0.570;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1152,0,1242
2	160889673	rs2203053	G	A	623.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.767;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.194;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.563;SB=-2.300e+02;SOR=0.478;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,24:53:99:652,0,833
2	160968743	rs66470452	CA	C	976.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;RPA=2,1;RU=A;SB=-4.576e+01;SOR=4.892;STR;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1014,69,0
2	160980182	rs79256056	C	A	640.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;SB=-8.097e+01;SOR=3.611;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:669,51,0
2	160993800	rs35720878	A	T	764.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-2.401e+02;SOR=2.124;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:793,60,0
2	161028992	rs1037694	T	C	1583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-6.620e+02;SOR=1.436;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1612,117,0
2	161169526	rs72972839	G	A	335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.888;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.352;SB=-1.380e+02;SOR=0.793;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:24:99:364,0,243
2	161169956	rs10929978	G	C	555.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.74;SB=-4.276e+01;SOR=4.174;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:584,45,0
2	162091765	rs3754971	G	A	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.023;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.956;SB=0.00;SOR=0.307;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:231,0,507
2	162175290	rs1116165	T	C	3045.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-8.590e+02;SOR=2.409;VQSLOD=6.33;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3074,226,0
2	162224193	.	G	GT	1371.73	PASS	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;RPA=5,6;RU=T;SB=-5.820e+02;SOR=1.055;STR;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:48:99:1409,129,0
2	162224495	rs2303318	A	C	99.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.196;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.65;ReadPosRankSum=0.392;SB=-9.732e-01;SOR=1.179;VQSLOD=9.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:99:128,0,284
2	162226315	rs12467117	G	T	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.738;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=1.026;SB=-1.380e+02;SOR=0.122;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:233,0,314
2	162226336	rs10497214	G	T	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.136;SB=-1.330e+02;SOR=1.179;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:354,0,354
2	162226838	rs1116173	A	G	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.930;SB=0.00;SOR=0.412;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:135,0,201
2	162241846	rs62188123	T	C	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.382;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=9.770;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.497;SB=-2.110e+02;SOR=0.066;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:35:99:409,0,591
2	162265189	rs12471336	G	T	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.126;SB=0.00;SOR=0.976;VQSLOD=10.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:254,0,192
2	162265270	rs16845844	A	G	621.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.304;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-0.694;SB=-1.340e+02;SOR=0.336;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:650,0,568
2	162280748	rs890076	G	A	874.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.012;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=1.508;SB=-1.600e+02;SOR=0.449;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,34:59:99:903,0,748
2	162360575	rs62187565	T	C	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.046;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.63;MQ0=0;MQRankSum=0.775;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.360;SB=-2.020e+02;SOR=0.473;VQSLOD=3.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,12:26:99:353,0,343
2	162363066	rs62187567	G	A	793.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=0.902;SB=-4.340e+02;SOR=0.365;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,32:71:99:822,0,1108
2	162627391	rs41267437	G	A	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=1.693;SB=-1.765e+00;SOR=2.584;VQSLOD=6.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:213,0,100
2	162696255	rs2084544	G	A	1060.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-3.540e+02;SOR=1.981;VQSLOD=7.01;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1089,81,0
2	162696414	rs2084543	C	T	2339.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-1.570e+03;SOR=0.718;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2368,172,0
2	162711682	rs41267441	A	C	1464.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=-2.311e+02;SOR=3.365;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1493,108,0
2	162738781	rs41267443	T	C	1200.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=0.00;SOR=6.869;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1229,90,0
2	162757381	rs142912867	TAAAAC	T	2068.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.18;RPA=3,2;RU=AAAAC;SB=-3.491e+02;SOR=3.056;STR;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:32:93:2106,93,0
2	162762034	rs72865241	G	A	610.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.48;SB=0.00;SOR=5.784;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:639,51,0
2	162830662	.	GTTAATGAGATAATGAAACA	G	1048.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.736;QD=12.74;ReadPosRankSum=0.763;SB=-2.090e+02;SOR=1.179;VQSLOD=2.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:15:99:1086,0,1502
2	162849944	.	T	TA	501.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DP=51;ExcessHet=3.0103;FS=6.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;RPA=11,12;RU=A;ReadPosRankSum=-1.710;SB=-1.270e+02;SOR=0.148;STR;VQSLOD=7.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,24:51:99:539,0,524
2	162873188	rs2970931	T	C	588.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-1.600;SB=-4.076e+01;SOR=0.173;VQSLOD=8.09;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,20:42:99:617,0,754
2	162875477	.	C	CT	106.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.27;RPA=12,13;RU=T;ReadPosRankSum=-1.444;SB=-1.905e+01;SOR=0.593;STR;VQSLOD=6.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,9:29:99:144,0,291
2	162875641	rs140360804	ATTAG	A	555.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;DB;DP=31;ExcessHet=3.0103;FS=6.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;RPA=2,1;RU=TTAG;ReadPosRankSum=1.827;SB=-4.500e+01;SOR=2.215;STR;VQSLOD=6.21;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,10:31:99:593,0,1338
2	162876826	.	TTCA	T	320.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.48;MQ0=0;MQRankSum=6.083;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=5.26;ReadPosRankSum=1.383;SB=-8.700e+01;SOR=0.558;VQSLOD=0.343;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,22:62:99:358,0,1625
2	162877400	rs16846261	G	A	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=1.935;SB=-1.769e+00;SOR=1.828;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:241,0,192
2	162890175	rs1558957	T	C	643.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.75;SB=-2.341e+02;SOR=2.215;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:48:672,48,0
2	162891848	rs6432708	C	T	1354.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SB=-2.401e+02;SOR=3.258;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1383,108,0
2	162903783	rs149913490	GA	G	353.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;DB;DP=45;ExcessHet=3.0103;FS=5.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.86;RPA=10,9;RU=A;ReadPosRankSum=1.623;SB=-5.000e+01;SOR=1.802;STR;VQSLOD=4.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,20:45:99:391,0,593
2	162930286	rs3216773	CGCCAGGGTCCTAGCAGAA	C	1849.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=0.00;SOR=4.804;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:1887,30,0
2	163030336	rs3764917	T	C	1065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-0.304;SB=-6.560e+02;SOR=0.706;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,45:78:99:1094,0,823
2	163051415	rs1468916	C	T	693.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-1.613e+02;SOR=2.737;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:722,54,0
2	163124051	rs1990760	C	T	813.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.385;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.303;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=-1.408;SB=-2.620e+02;SOR=1.288;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,32:49:99:842,0,438
2	163128824	rs3747517	T	C	759.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-0.506;SB=-2.350e+02;SOR=0.859;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,29:55:99:788,0,786
2	163694878	rs4667768	C	G	751.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.413;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=6.509;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-1.756;SB=-4.320e+02;SOR=0.183;VQSLOD=7.03;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,32:53:99:780,0,658
2	163694886	rs4667769	G	A	670.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.398;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=5.973;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.156;SB=-4.040e+02;SOR=0.213;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:56:99:699,0,785
2	164466039	rs3833554	AT	A	532.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.37;RPA=10,9;RU=T;SB=-1.083e+02;SOR=2.636;STR;VQSLOD=4.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:570,63,0
2	164468414	rs2231898	T	C	409.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.24;ReadPosRankSum=0.871;SB=0.00;SOR=3.912;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,13:14:1:435,0,1
2	165349459	rs1051160	G	A	262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=6.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.316;SB=-5.150e-01;SOR=2.833;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:291,0,341
2	165353712	rs8192673	C	T	879.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.246;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-2.052;SB=-4.970e+02;SOR=0.693;VQSLOD=8.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,32:72:99:908,0,1259
2	165358672	rs4667463	A	G	1259.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-2.181e+02;SOR=3.003;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1288,102,0
2	165383686	.	AATATATATATATAT	AAT,A	2497.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.354;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.82;RPA=22,16,15;RU=AT;ReadPosRankSum=1.387;SB=-3.198e+02;SOR=1.519;STR;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,6,12:41:99:2535,384,392,166,0,296
2	165424837	rs17437781	A	G	863.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.161;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-1.544;SB=-2.870e+02;SOR=0.665;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,32:89:99:892,0,1532
2	165476253	rs61748245	A	T	1179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.818;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.134;SB=-7.420e+02;SOR=0.520;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,46:86:99:1208,0,1106
2	165578581	rs6414069	A	G	1241.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.843;HaplotypeScore=4.5475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-1.464;SB=-5.710e+02;SOR=0.510;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,47:88:99:1270,0,1090
2	165584407	rs12692743	C	T	494.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=0.139;SB=0.00;SOR=1.136;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,15:25:99:523,0,326
2	165630460	rs355865	T	C	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-0.349;SB=0.00;SOR=0.551;VQSLOD=8.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:141,0,207
2	165636332	rs355897	T	C	502.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.217;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-0.768;SB=-2.230e+02;SOR=0.897;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:531,0,571
2	165657185	rs355915	G	A	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=1.255;SB=-3.000e+01;SOR=1.609;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:246,0,204
2	165698715	.	A	AG	339.74	PASS	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;RPA=2,3;RU=G;SB=0.00;SOR=4.615;STR;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:11:27:377,27,0
2	165809138	rs10544528	ATG	A	386.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.71;RPA=9,8;RU=TG;SB=0.00;SOR=4.804;STR;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:30:424,30,0
2	165811554	.	GAA	G	564.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.300;DP=28;ExcessHet=3.0103;FS=2.539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.55;RPA=16,14;RU=A;ReadPosRankSum=-0.447;SB=-1.684e+02;SOR=1.981;STR;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:4,19:28:48:602,48,0
2	165996107	rs1946892	T	A	1255.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.733;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.505;SB=-6.320e+02;SOR=0.959;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,47:90:99:1284,0,1072
2	166012203	rs3731760	C	T	1772.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;SB=-4.260e+02;SOR=2.584;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1801,132,0
2	166012631	rs13011371	G	A	667.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.197;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=2.061;SB=-2.100e+02;SOR=0.598;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,24:42:99:696,0,473
2	166012681	rs13010846	A	C	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.913;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=-0.065;SB=0.00;SOR=1.911;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:370,0,118
2	166152185	rs2075704	A	G	570.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.77;SB=0.00;SOR=5.549;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:599,45,0
2	166153499	rs7593568	A	G	343.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-7.797e+01;SOR=2.303;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:372,27,0
2	166164215	rs3214603	CA	C	139.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;RPA=8,7;RU=A;ReadPosRankSum=-0.153;SB=-2.502e+01;SOR=0.693;STR;VQSLOD=9.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,8:16:99:177,0,200
2	166167166	rs7560348	T	A	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-1.198;SB=-3.577e+01;SOR=0.293;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:210,0,160
2	166170073	rs13025009	A	G	391.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=7.501;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-0.095;SB=-5.700e+01;SOR=2.642;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:420,0,253
2	166170075	rs77301739	C	A	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.328;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=0.237;SB=-1.390e+02;SOR=0.148;VQSLOD=7.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,10:26:99:290,0,485
2	166170127	rs2121371	T	C	1539.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-5.280e+02;SOR=1.981;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1568,114,0
2	166172317	rs1838846	A	G	1223.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.96;SB=-2.401e+02;SOR=2.964;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1252,90,0
2	166179650	rs1867864	C	T	1724.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.002;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.714;HaplotypeScore=7.1601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-0.198;SB=-6.830e+02;SOR=0.619;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,64:125:99:1753,0,1761
2	166179953	rs200546427	G	A	1032.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.587;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.275;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-0.794;SB=-1.150e+02;SOR=1.070;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,35:78:99:1061,0,1336
2	166211154	.	C	T	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.487;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.33;ReadPosRankSum=-0.097;SB=-1.700e+02;SOR=1.085;VQSLOD=6.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,19:51:99:504,0,909
2	166221569	rs3835933	TG	T	1509.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.645;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;MQRankSum=0.292;POSITIVE_TRAIN_SITE;QD=31.45;RPA=10,9;RU=G;ReadPosRankSum=0.939;SB=-3.670e+02;SOR=1.217;STR;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1547,110,0
2	166221883	rs72134969	G	GTATC	283.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;RPA=6,7;RU=TATC;SB=0.00;SOR=3.611;STR;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:17:15:321,15,0
2	166229922	rs6432821	T	C	1558.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-4.390e+02;SOR=2.584;VQSLOD=4.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1587,123,0
2	166514165	rs12620509	C	G	506.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.184;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-0.271;SB=-1.010e+02;SOR=0.922;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:535,0,448
2	166514594	rs10803800	A	G	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-1.521;SB=-5.900e+01;SOR=0.283;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:178,0,211
2	166618127	.	G	GA	836.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.848;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.24;RPA=12,13;RU=A;ReadPosRankSum=2.331;SB=-6.379e+01;SOR=2.303;STR;VQSLOD=6.74;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:2,34:36:71:814,71,0
2	166621354	rs2113840	T	C	1326.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-3.550e+02;SOR=2.303;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1355,99,0
2	166626606	rs4667836	G	A	281.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.364;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-1.796;SB=-2.901e+01;SOR=1.473;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:310,0,315
2	166740578	rs34701755	C	T	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.573;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=1.418;SB=-8.500e+01;SOR=0.586;VQSLOD=8.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,12:29:99:277,0,471
2	166756518	rs202002748	C	A	31.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6479;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=-0.842;QD=3.18;ReadPosRankSum=0.411;SB=-1.765e+00;SOR=1.329;VQSLOD=1.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:60:60,0,97
2	166788336	rs7592429	T	C	4101.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-2.070e+03;SOR=1.162;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4130,295,0
2	166797450	rs7592392	C	A	359.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=0.00;SOR=4.977;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:388,30,0
2	166797646	rs1432273	C	T	2811.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-1.740e+03;SOR=0.715;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2840,211,0
2	166799596	rs13000534	T	C	403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=0.00;SOR=4.977;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:432,33,0
2	166799893	rs10930190	G	A	956.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=0.00;SOR=6.593;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:75:985,75,0
2	166801924	rs6432853	C	G	425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.92;SB=0.00;SOR=4.977;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:454,33,0
2	166802344	.	C	CT	124.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.82;RPA=2,3;RU=T;ReadPosRankSum=0.000;SB=0.00;SOR=1.609;STR;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,5:10:59:162,0,59
2	166810373	rs1347041	A	G	542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-2.001e+02;SOR=1.863;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:571,42,0
2	166892444	rs34673057	TAAA	T	181.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DB;DP=16;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;RPA=15,12;RU=A;ReadPosRankSum=1.868;SB=-7.697e+01;SOR=0.042;STR;VQSLOD=6.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,6:16:99:219,0,258
2	166892788	rs2298771	C	T	729.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-1.610;SB=-3.210e+02;SOR=0.848;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,27:54:99:758,0,763
2	166893081	rs7601520	G	A	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-0.271;SB=0.00;SOR=0.340;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:186,0,315
2	166894120	rs66463257	AGTTT	A	501.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.95;RPA=2,1;RU=GTTT;ReadPosRankSum=1.209;SB=0.00;SOR=1.609;STR;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:539,0,207
2	166894230	rs2020318	T	C	1195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.926;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.151;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=-1.458;SB=-3.570e+02;SOR=0.478;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,42:69:99:1224,0,711
2	166895913	.	CTTTT	C	379.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;DP=23;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;RPA=17,13;RU=T;ReadPosRankSum=0.739;SB=-9.317e+01;SOR=1.802;STR;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:23:99:355,0,288
2	166896143	rs2126152	T	G	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.172;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.374;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-0.658;SB=-1.320e+02;SOR=0.970;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,15:36:99:441,0,533
2	166897864	rs6432860	A	G	1216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.763;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.11;MQ0=0;MQRankSum=1.072;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-0.336;SB=-6.130e+02;SOR=0.853;VQSLOD=0.141;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,47:100:99:1245,0,1443
2	166897989	.	G	GA	546.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQ0=0;MQRankSum=1.779;POSITIVE_TRAIN_SITE;QD=8.54;RPA=14,15;RU=A;ReadPosRankSum=-0.396;SB=-1.580e+02;SOR=0.850;STR;VQSLOD=2.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,32:67:99:584,0,566
2	166900606	rs6753355	A	C	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.454;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=-0.889;SB=-3.001e+01;SOR=0.264;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,11:31:99:325,0,641
2	166903188	rs538921	A	C	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.661;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.330;SB=-1.790e+02;SOR=0.527;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:35:99:454,0,517
2	166903445	rs7580482	T	C	637.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.267;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.980;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.054;SB=-2.240e+02;SOR=1.317;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,23:53:99:666,0,828
2	166904346	rs1461193	G	A	396.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-0.914;SB=-1.560e+02;SOR=0.990;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,17:31:99:425,0,378
2	166905480	rs994399	G	A	622.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=7.781;HaplotypeScore=2.5220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=0.734;SB=-1.230e+02;SOR=2.061;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,21:38:99:651,0,428
2	166909559	rs3812719	C	A	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.284;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=0.677;SB=-3.401e+01;SOR=1.609;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:325,0,117
2	166915014	rs8191987	A	G	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.43;ReadPosRankSum=-0.980;SB=0.00;SOR=1.802;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:83:297,0,83
2	166930214	rs566839	T	A	1127.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-1.185e+02;SOR=3.912;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:84:1156,84,0
2	167060449	rs10180721	A	T	641.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.016;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.78;ReadPosRankSum=-0.274;SB=-1.165e+02;SOR=1.609;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,18:19:51:670,51,0
2	167060980	rs77944059	GAAAC	G	436.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.18;RPA=2,1;RU=AAAC;SB=0.00;SOR=4.407;STR;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:10:24:474,24,0
2	167090042	rs722204	G	A	921.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.12;SB=0.00;SOR=6.439;VQSLOD=7.40;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,24:24:72:950,72,0
2	167099158	rs6746030	A	G	1368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-3.640e+02;SOR=2.303;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1397,102,0
2	167134730	rs201890240	T	C	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.218;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=-1.407;SB=-1.900e+02;SOR=0.941;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:460,0,689
2	167137120	rs4525717	C	T	1531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.871;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=3.374;HaplotypeScore=5.1407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-0.877;SB=-9.160e+02;SOR=0.426;VQSLOD=7.46;culprit=DP	GT:AD:DP:GQ:PL	0/1:58,61:119:99:1560,0,1509
2	167137270	rs75236447	A	T	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-1.937;SB=0.00;SOR=0.693;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:390,0,406
2	167149693	rs7588632	G	A	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.066;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=9.921;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=-1.813;SB=-2.340e+02;SOR=0.110;VQSLOD=6.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,21:58:99:503,0,1188
2	167162277	rs4429487	G	A	880.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.250;SB=-4.840e+02;SOR=0.620;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,35:64:99:909,0,711
2	167279922	rs6738031	C	A	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.956;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.75;ReadPosRankSum=-1.157;SB=-3.000e+01;SOR=0.502;VQSLOD=9.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:191,0,443
2	167322522	rs7593452	G	A	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.899;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-1.817;SB=-1.040e+02;SOR=0.320;VQSLOD=7.92;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,11:23:99:331,0,384
2	167328750	rs2293567	C	T	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=-0.326;SB=-3.300e+01;SOR=0.307;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:185,0,323
2	167334085	rs7565062	G	T	942.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.288;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.737;SB=-3.130e+02;SOR=0.743;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,32:53:99:971,0,680
2	167759948	rs7599152	C	T	1496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-5.080e+02;SOR=1.880;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1525,114,0
2	167760451	rs5836125	AG	A	1114.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.264;DB;DP=56;ExcessHet=3.0103;FS=4.755;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=1.378;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=-0.371;SB=-3.500e+01;SOR=1.923;VQSLOD=0.162;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,29:56:99:1152,0,1092
2	167992286	rs6720763	T	C	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-1.722;SB=-3.377e+01;SOR=0.175;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:204,0,248
2	168040906	rs10497320	G	A	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=1.050;SB=0.00;SOR=0.836;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:240,0,176
2	168041152	rs16853169	T	C	624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.136;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.690;SB=-2.170e+02;SOR=0.511;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,21:38:99:653,0,455
2	168074535	rs73972208	G	A	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.002;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=0.159;SB=0.00;SOR=1.402;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:452,0,224
2	168096268	.	A	AT	196.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;DP=18;ExcessHet=3.0103;FS=7.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.93;RPA=8,9;RU=T;ReadPosRankSum=0.444;SB=-9.732e-01;SOR=3.145;STR;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:234,0,170
2	168098199	rs76201476	A	C	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.019;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=1.351;SB=-7.300e+01;SOR=0.141;VQSLOD=6.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,8:20:99:203,0,385
2	168099738	rs10497323	T	C	1308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.754;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.652;SB=-7.680e+02;SOR=0.565;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,48:100:99:1337,0,1478
2	168099775	rs16853305	C	G	1356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.005;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-1.642;SB=-7.140e+02;SOR=0.685;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1385,0,1366
2	168099796	rs16853306	T	C	1096.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.266;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.299;SB=-6.160e+02;SOR=0.850;VQSLOD=9.05;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1125,0,1412
2	168103304	rs16853309	G	A	776.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.524;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-0.816;SB=-3.350e+02;SOR=0.386;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:51:99:805,0,774
2	168103863	rs7581012	G	A	528.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.067;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.751;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=0.000;SB=-2.990e+02;SOR=0.515;VQSLOD=7.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,21:58:99:557,0,1130
2	168103925	rs7607246	A	G	743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.215;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=-0.413;SB=-3.550e+02;SOR=0.619;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,30:77:99:772,0,1407
2	168104199	rs7581190	C	T	1586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.771;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=3.631;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-0.313;SB=-6.840e+02;SOR=1.091;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,59:109:99:1615,0,1343
2	168104370	rs61748715	A	C	692.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.190;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.649;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=0.329;SB=-2.660e+02;SOR=1.329;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,22:44:99:721,0,660
2	168104627	rs61750760	G	A	805.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.236;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.937;HaplotypeScore=1.5983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=-2.091;SB=-4.190e+02;SOR=0.293;VQSLOD=7.39;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,27:53:99:834,0,700
2	168104988	rs59889092	G	T	519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.675;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.281;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=2.246;SB=-2.240e+02;SOR=0.941;VQSLOD=7.26;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,16:34:99:548,0,425
2	168106085	rs16853328	G	A	562.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.586;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=0.255;SB=-3.240e+02;SOR=0.489;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,23:47:99:591,0,702
2	168106246	rs16853330	G	A	686.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.715;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.113;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=1.266;SB=-3.250e+02;SOR=0.976;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:715,0,605
2	168107155	rs16853331	G	A	641.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.384;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=1.258;SB=-3.980e+02;SOR=0.425;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:670,0,478
2	168107491	rs3749004	A	G	853.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=8.512;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.882;SB=-5.060e+02;SOR=0.654;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,35:65:99:882,0,835
2	168108357	rs1842233	A	G	1501.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=0.484;SB=-8.480e+02;SOR=0.646;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,50:89:99:1530,0,1160
2	168114982	rs376654433	G	A	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-1.744;SB=-9.900e+01;SOR=0.593;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,11:30:99:327,0,573
2	168115710	rs3749006	T	G	458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.539;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.918;SB=-2.830e+02;SOR=0.512;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,18:36:99:487,0,466
2	168115769	rs16853344	G	C	397.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.079;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-0.035;SB=-2.280e+02;SOR=0.697;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:426,0,513
2	168115797	rs75758327	G	C	473.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.780;HaplotypeScore=2.3893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-1.653;SB=-2.620e+02;SOR=0.863;VQSLOD=7.52;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,19:41:99:502,0,581
2	168572093	rs10168562	G	T	1254.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.27;SB=-3.980e+02;SOR=1.885;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:96:1283,96,0
2	168572098	rs10192010	A	G	1325.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.01;SB=-4.290e+02;SOR=1.802;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1354,99,0
2	168572438	rs4667969	G	A	1113.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=-7.040e+02;SOR=0.693;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:84:1142,84,0
2	168873763	rs16854564	A	G	53.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.108;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.84;ReadPosRankSum=-2.026;SB=0.00;SOR=0.105;VQSLOD=8.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:82:82,0,397
2	168922154	rs75172895	C	T	509.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.357;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.128;SB=-3.070e+02;SOR=0.407;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:538,0,446
2	168931610	rs3739115	G	A	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.587;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=1.883;SB=-3.150e+02;SOR=0.555;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,24:42:99:660,0,456
2	168986154	rs925846	A	G	583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.93;SB=-1.245e+02;SOR=2.584;VQSLOD=6.57;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,16:16:45:612,45,0
2	168996775	rs2278785	T	C	1295.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-2.590e+02;SOR=2.891;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1324,96,0
2	168997097	rs2278784	A	G	1235.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-5.870e+02;SOR=1.236;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1264,99,0
2	169020166	rs2292785	G	A	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.024;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-0.706;SB=0.00;SOR=1.244;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:347,0,174
2	169020179	rs2292786	C	T	326.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=-0.326;SB=0.00;SOR=1.244;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:355,0,158
2	169674655	rs830026	T	C	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=1.064;SB=-2.000e+02;SOR=0.976;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,14:18:99:389,0,113
2	169674663	rs830025	A	T	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=1.190;SB=-1.790e+02;SOR=0.836;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,13:17:99:367,0,114
2	169674764	rs830024	C	G	196.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=0.988;SB=-9.500e+01;SOR=1.179;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:65:225,0,65
2	169687680	rs519599	A	G	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.702;SB=0.00;SOR=0.551;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:151,0,205
2	169690729	rs522893	T	C	411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.889;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.091;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=1.530;SB=-1.730e+02;SOR=0.317;VQSLOD=7.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,15:41:99:440,0,759
2	169707428	rs540652	C	T	908.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.741;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.1101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=0.751;SB=-3.700e+02;SOR=0.686;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,36:94:99:937,0,1621
2	169707552	rs488621	A	G	951.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.242;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=8.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=0.586;SB=-2.460e+02;SOR=1.540;VQSLOD=5.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:68,34:102:99:980,0,1925
2	169712148	rs35486079	C	CA	182.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=0.965;POSITIVE_TRAIN_SITE;QD=7.94;RPA=16,17;RU=A;ReadPosRankSum=1.378;SB=-1.204e+01;SOR=0.299;STR;VQSLOD=3.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,13:24:99:220,0,146
2	169713084	rs11385898	T	TA	604.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DB;DP=47;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;RPA=11,12;RU=A;ReadPosRankSum=1.060;SB=-2.070e+02;SOR=0.394;STR;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,27:47:99:642,0,310
2	169717541	rs2632372	T	C	589.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.590;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=1.244;SB=-1.680e+02;SOR=0.602;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:618,0,766
2	169717624	rs2685800	C	T	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.198;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=-1.007;SB=0.00;SOR=1.179;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:269,0,164
2	169721377	rs479661	G	A	701.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.607;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.052;SB=-2.630e+02;SOR=0.852;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,27:60:99:730,0,1027
2	169727879	rs61598834	G	GA	221.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;RPA=7,8;RU=A;ReadPosRankSum=0.738;SB=0.00;SOR=1.473;STR;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:91:259,0,91
2	169728069	rs5836210	GAAA	G	432.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.912;DB;DP=33;ExcessHet=3.0103;FS=6.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;RPA=14,11;RU=A;ReadPosRankSum=-1.250;SB=-6.700e+01;SOR=2.012;STR;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:33:99:470,0,543
2	169759149	.	A	T	449.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-0.651;SB=-6.500e+01;SOR=1.230;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:478,0,507
2	169763148	rs560887	T	C	740.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-2.120;SB=-3.860e+02;SOR=0.776;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,30:63:99:769,0,817
2	169764176	rs492594	G	C	2555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;DB;DP=193;Dels=0.00;ExcessHet=3.0103;FS=4.142;HaplotypeScore=1.7337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=1.137;SB=-1.340e+03;SOR=1.000;VQSLOD=6.75;culprit=DP	GT:AD:DP:GQ:PL	0/1:97,96:193:99:2584,0,2525
2	169780366	rs579275	T	C	418.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.135;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=1.262;SB=-3.500e+01;SOR=0.963;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:447,0,325
2	169789016	rs497692	T	C	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.59;ReadPosRankSum=1.681;SB=-2.610e+02;SOR=0.575;VQSLOD=8.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,21:66:99:529,0,1179
2	169801488	rs853789	A	G	1730.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-5.360e+02;SOR=2.259;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1759,126,0
2	169814347	rs853773	A	G	773.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-3.377e+01;SOR=4.892;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:802,66,0
2	169814655	rs853772	G	T	3086.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-9.110e+02;SOR=2.154;VQSLOD=5.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3115,235,0
2	169820618	rs4148796	A	G	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.773;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-0.553;SB=-1.765e+00;SOR=1.501;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:453,0,449
2	169820619	rs4148795	T	C	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.616;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-0.415;SB=-1.765e+00;SOR=1.501;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:460,0,398
2	169824739	.	T	TA	262.74	PASS	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.27;RPA=2,3;RU=A;SB=-4.376e+01;SOR=3.258;STR;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:300,30,0
2	169824743	.	C	A	329.78	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.98;SB=0.00;SOR=3.258;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:358,27,0
2	169824749	.	C	A	392.77	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.73;SB=-3.577e+01;SOR=3.611;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:421,33,0
2	169826877	rs2193831	C	T	1445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-5.430e+02;SOR=1.814;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1474,108,0
2	169828277	rs2241341	G	A	403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-1.205e+02;SOR=2.147;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:432,33,0
2	169828325	rs2241340	A	G	1314.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-3.150e+02;SOR=2.432;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1343,99,0
2	169830155	rs2287623	G	A	1009.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-3.590e+02;SOR=1.819;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1038,78,0
2	169830328	rs2287622	A	G	2030.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-1.113e+03;SOR=1.054;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2059,147,0
2	169830515	rs2287621	G	A	575.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-4.076e+01;SOR=4.174;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:604,45,0
2	169832752	rs4148785	C	T	345.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-4.176e+01;SOR=3.442;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:374,27,0
2	169832761	rs4148784	G	C	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-4.276e+01;SOR=3.442;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:12:30:410,30,0
2	169842809	rs2287618	T	C	512.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=0.00;SOR=5.549;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:541,45,0
2	169995581	rs35472707	C	T	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.276;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.652;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.071;SB=-2.870e+02;SOR=1.270;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,24:44:99:615,0,501
2	169997051	rs990626	G	A	1137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.861;HaplotypeScore=3.3542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.847;SB=-4.620e+02;SOR=0.873;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1166,0,1124
2	170002221	.	T	C	420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.305;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.58;ReadPosRankSum=0.804;SB=-1.820e+02;SOR=0.551;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,17:27:99:449,0,252
2	170003432	rs4667591	T	G	2901.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.14;SB=-1.519e+03;SOR=0.979;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2930,214,0
2	170003638	rs4667592	G	A	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.13;ReadPosRankSum=-1.346;SB=0.00;SOR=0.188;VQSLOD=8.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:114,0,331
2	170010985	rs2075252	T	C	1557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-5.520e+02;SOR=1.609;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1586,117,0
2	170025083	rs2229268	A	G	1648.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-6.090e+02;SOR=1.893;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1677,129,0
2	170025340	rs2239602	C	T	420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-7.697e+01;SOR=2.833;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:449,33,0
2	170029800	rs17848190	T	C	3343.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-1.417e+03;SOR=1.477;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3372,244,0
2	170029922	rs17848189	C	A	1123.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-2.231e+02;SOR=2.899;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1152,87,0
2	170030821	rs2075250	T	C	484.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=0.00;SOR=5.421;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:513,42,0
2	170031529	rs201393942	TA	T	94.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.90;RPA=19,18;RU=A;ReadPosRankSum=0.611;SB=0.00;SOR=1.981;STR;VQSLOD=6.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,9:12:26:132,0,26
2	170038235	rs67061649	CAGACTGCATTCTGAATTCTTTTCTG	C	2784.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;SB=0.00;SOR=4.804;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:19:30:2822,30,0
2	170038262	rs199584573	A	C	349.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.98;SB=0.00;SOR=4.804;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:378,30,0
2	170038263	rs200691310	T	C	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=0.00;SOR=4.804;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
2	170038571	rs17848180	C	T	626.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.82;SB=-4.076e+01;SOR=4.407;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:655,51,0
2	170050472	rs2075248	T	C	540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.362;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=-0.608;SB=-9.400e+01;SOR=1.609;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:569,0,487
2	170053505	rs2228171	C	T	1099.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.538;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.707;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.361;SB=-4.620e+02;SOR=0.331;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,44:85:99:1128,0,1073
2	170053580	rs2302696	C	T	460.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.670;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-1.271;SB=-8.197e+01;SOR=0.119;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,17:31:99:489,0,481
2	170055255	rs16823023	T	C	743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.352;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.945;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=1.095;SB=-3.490e+02;SOR=1.382;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,28:42:99:772,0,385
2	170058497	rs16856600	G	A	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=-0.623;SB=-1.766e+00;SOR=2.833;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:221,0,122
2	170059190	rs2239599	T	C	828.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.189;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.314;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=1.173;SB=-1.690e+02;SOR=1.258;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:857,0,749
2	170063783	rs13417389	T	C	709.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.352;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.469;HaplotypeScore=3.3471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=-0.896;SB=-1.480e+02;SOR=0.161;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:738,0,692
2	170077165	rs3815572	C	T	45.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.16;ReadPosRankSum=0.191;SB=0.00;SOR=0.180;VQSLOD=9.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:74:74,0,291
2	170082013	rs2075246	A	G	780.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.155;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.380;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=-1.170;SB=-2.140e+02;SOR=1.284;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,26:44:99:809,0,446
2	170088046	rs4668128	G	A	898.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;SB=-1.205e+02;SOR=3.611;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:927,72,0
2	170088477	rs2302693	T	C	1237.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-6.160e+02;SOR=1.151;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1266,93,0
2	170088506	rs2302692	T	C	971.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-3.420e+02;SOR=1.751;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1000,78,0
2	170089824	rs2239596	T	C	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.662;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.489;SB=-5.150e-01;SOR=3.056;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:273,0,301
2	170089851	rs2239595	G	A	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.132;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.318;SB=-9.500e+01;SOR=1.508;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:305,0,324
2	170092395	rs2229267	A	G	1065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.943;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.623;SB=-6.070e+02;SOR=0.480;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,41:75:99:1094,0,936
2	170096018	rs830973	G	A	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.524;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.906;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.082;SB=-1.430e+02;SOR=0.260;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:304,0,357
2	170099446	rs831041	T	G	833.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.173;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-0.049;SB=-3.620e+02;SOR=0.626;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,33:86:99:862,0,1462
2	170099473	rs831042	T	C	1004.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.364;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.757;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-1.163;SB=-4.800e+02;SOR=0.807;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,43:102:99:1033,0,1561
2	170099895	rs2075255	A	C	514.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.278;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=1.532;SB=-6.400e+01;SOR=0.941;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,17:25:99:543,0,205
2	170099899	rs2075254	G	A	517.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.485;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.965;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=1.545;SB=-1.460e+02;SOR=0.368;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,18:27:99:546,0,260
2	170103336	rs831043	T	C	1354.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.437;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.535;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.954;SB=-6.310e+02;SOR=0.962;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1383,0,1561
2	170103351	rs2075249	G	T	3480.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-1.555e+03;SOR=1.314;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3509,259,0
2	170112478	.	T	TA	261.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.623;POSITIVE_TRAIN_SITE;QD=17.45;RPA=1,2;RU=A;ReadPosRankSum=-0.112;SB=0.00;SOR=0.818;STR;VQSLOD=3.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:299,0,246
2	170115588	rs2241190	T	C	1470.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.548;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=0.949;SB=-7.440e+02;SOR=0.710;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,58:105:99:1499,0,1213
2	170129528	rs830994	G	A	961.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.354;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.862;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-1.141;SB=-5.510e+02;SOR=0.832;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,40:82:99:990,0,1056
2	170129636	rs830995	A	G	519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.608;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=0.826;SB=-1.560e+02;SOR=0.327;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:36:99:548,0,482
2	170134191	rs831003	G	C	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.669;SB=-2.901e+01;SOR=0.693;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:250,0,250
2	170135742	rs831004	C	T	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.100;SB=0.00;SOR=0.693;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:160,0,168
2	170136168	rs17280868	T	A	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.80;ReadPosRankSum=1.308;SB=0.00;SOR=1.270;VQSLOD=9.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:246,0,121
2	170139346	rs831010	C	T	707.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.177;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=7.795;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-1.462;SB=-1.000e+02;SOR=1.863;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,25:63:99:736,0,966
2	170139639	rs831011	A	G	480.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.997;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=1.861;SB=0.00;SOR=2.303;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,14:18:99:509,0,101
2	170151227	.	TAA	T	503.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.99;RPA=23,21;RU=A;ReadPosRankSum=0.000;SB=-7.894e+00;SOR=3.258;STR;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,17:28:48:458,48,0
2	170164004	.	T	C	354.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.570;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.74;ReadPosRankSum=-0.418;SB=-1.765e+00;SOR=2.093;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:383,0,257
2	170218816	rs1559013	T	C	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-7.397e+01;SOR=2.670;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:440,33,0
2	170218847	rs1559014	C	G	376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=-4.176e+01;SOR=3.442;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:405,30,0
2	170336024	rs1879466	G	C	2198.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-1.179e+03;SOR=1.032;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2227,160,0
2	170339003	rs2353187	C	A	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-3.777e+01;SOR=3.442;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:394,30,0
2	170355944	rs12692909	A	T	530.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-7.597e+01;SOR=3.258;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:559,42,0
2	170386678	rs2166577	T	C	919.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;SB=-1.633e+02;SOR=3.014;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:948,69,0
2	170394487	rs2290005	T	A	583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-1.553e+02;SOR=2.303;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:612,45,0
2	170403030	rs2253680	T	C	1522.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-6.340e+02;SOR=1.514;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1551,120,0
2	170411693	rs2683455	T	C	772.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-5.360e+02;SOR=0.765;VQSLOD=4.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:57:801,57,0
2	170425523	rs2683446	A	C	540.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=-0.503;SB=-8.297e+01;SOR=1.101;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,18:21:26:569,0,26
2	170463551	rs2592813	T	G	2365.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.54;ReadPosRankSum=-0.670;SB=-9.750e+02;SOR=0.713;VQSLOD=4.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,74:75:99:2394,175,0
2	170605981	rs4667607	C	T	1313.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-3.900e+02;SOR=2.191;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1342,102,0
2	170606438	rs10611184	TATAC	T	1684.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.58;SB=-2.175e+02;SOR=3.528;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:26:75:1722,75,0
2	170606450	rs79825047	C	T	803.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.95;SB=-1.205e+02;SOR=3.352;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:832,66,0
2	170606476	rs59378347	CAT	C	744.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.41;RPA=4,3;RU=AT;SB=-4.876e+01;SOR=4.294;STR;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:20:51:782,51,0
2	170606498	.	T	C	76.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=55.75;MQ0=0;MQRankSum=1.416;QD=4.26;ReadPosRankSum=-2.820;SB=-5.150e-01;SOR=1.329;VQSLOD=0.870;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:18:99:105,0,484
2	170606724	rs10164599	A	G	385.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-2.401e+02;SOR=0.693;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:414,30,0
2	170632960	rs367696710	C	CA	558.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.28;RPA=8,9;RU=A;SB=-9.051e+01;SOR=3.442;STR;VQSLOD=3.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:71:596,71,0
2	170632969	.	C	A	963.77	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.8851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.01;SB=-1.931e+02;SOR=2.753;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:992,75,0
2	170633023	.	T	TA	1386.73	PASS	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;RPA=1,2;RU=A;SB=-5.020e+02;SOR=1.473;STR;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1424,96,0
2	170633067	rs6745191	G	T	1175.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-7.480e+02;SOR=0.843;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:87:1204,87,0
2	170633103	rs11325477	GA	G	1405.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;RPA=2,1;RU=A;SB=-3.570e+02;SOR=2.165;STR;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:33:96:1443,96,0
2	170665108	rs2556352	G	A	842.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=0.00;SOR=6.358;VQSLOD=7.82;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,23:23:69:871,69,0
2	170668813	rs3731674	C	T	625.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.76;SB=-3.477e+01;SOR=4.407;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:654,51,0
2	170676227	rs1541776	T	C	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-1.633e+02;SOR=1.609;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:30:410,30,0
2	170677855	.	G	GT	348.73	PASS	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.91;RPA=10,11;RU=T;SB=-3.277e+01;SOR=3.912;STR;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:16:42:386,42,0
2	170762487	rs10171268	C	T	1449.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;SB=-1.931e+02;SOR=3.767;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1478,111,0
2	170782037	rs1461958	C	T	884.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=0.00;SOR=6.358;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:913,69,0
2	170782338	rs13016918	C	T	775.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-4.076e+01;SOR=4.712;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:804,60,0
2	170784049	rs898851	G	A	559.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=0.00;SOR=5.670;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:588,45,0
2	170850738	rs1461959	T	C	908.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=0.00;SOR=6.439;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:937,69,0
2	170870595	rs10497357	T	C	1455.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-1.185e+02;SOR=4.461;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1484,108,0
2	170871976	rs13028230	A	G	1337.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.77;SB=0.00;SOR=7.112;VQSLOD=3.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1366,102,0
2	170912004	.	C	T	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.580;SB=-1.830e+02;SOR=0.845;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,16:40:99:451,0,613
2	170912077	rs140078278	G	A	459.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.652;HaplotypeScore=2.5367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.672;SB=-3.060e+02;SOR=0.330;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,20:45:99:488,0,593
2	170917983	rs35032863	CT	C	398.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=0.586;POSITIVE_TRAIN_SITE;QD=15.34;RPA=12,11;RU=T;ReadPosRankSum=0.358;SB=-9.314e+01;SOR=1.123;STR;VQSLOD=3.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,21:33:65:436,0,65
2	170930241	.	G	GA	247.74	PASS	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;RPA=6,7;RU=A;SB=0.00;SOR=4.615;STR;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:12:27:285,27,0
2	171055942	rs35521414	T	A	1018.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.96;SB=-1.881e+02;SOR=2.985;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1047,78,0
2	171056569	rs6756347	T	A	347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=0.00;SOR=4.804;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:376,30,0
2	171070850	rs13423313	G	T	1781.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.751;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=-1.449;SB=-2.530e+02;SOR=2.142;VQSLOD=4.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1810,141,0
2	171070912	rs13385825	T	C	2532.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-1.416e+03;SOR=0.990;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2561,187,0
2	171071369	rs4667626	C	T	3409.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3483;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-1.264e+03;SOR=1.769;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3438,253,0
2	171073887	rs2161916	G	A	2214.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.04;SB=-1.501e+03;SOR=0.718;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2243,163,0
2	171092445	rs1035625	A	G	748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-7.597e+01;SOR=3.816;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:777,57,0
2	171192084	rs12466203	G	A	2207.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=-5.830e+02;SOR=2.448;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2236,163,0
2	171225841	rs4668246	A	G	660.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.936;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=-0.557;SB=-2.920e+02;SOR=0.918;VQSLOD=7.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,26:72:99:689,0,1257
2	171240550	rs2048987	T	C	339.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=4.804;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:368,30,0
2	171242761	rs17497636	G	A	1904.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.755;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-1.779;SB=-1.002e+03;SOR=0.974;VQSLOD=7.41;culprit=DP	GT:AD:DP:GQ:PL	0/1:73,77:150:99:1933,0,1959
2	171248778	rs62170829	G	A	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.357;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.583;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-1.248;SB=-1.260e+02;SOR=0.377;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,25:53:99:705,0,894
2	171256597	rs7561268	A	C	545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.249;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=1.482;SB=-9.732e-01;SOR=1.382;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,18:52:99:574,0,1068
2	171256912	.	C	CT	264.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=1.499;POSITIVE_TRAIN_SITE;QD=6.02;RPA=18,19;RU=T;ReadPosRankSum=-0.951;SB=-6.151e+01;SOR=1.292;STR;VQSLOD=1.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,22:65:99:302,0,254
2	171260708	rs10930425	C	A	1489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-2.660e+02;SOR=3.160;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1518,117,0
2	171260787	rs6736609	G	A	2860.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-1.095e+03;SOR=1.770;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2889,220,0
2	171260797	rs33962844	A	G	1268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.750;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.750;HaplotypeScore=2.8662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=0.172;SB=-6.730e+02;SOR=0.422;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,47:99:99:1297,0,1456
2	171260820	rs6751520	T	C	3701.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-1.835e+03;SOR=1.159;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3730,274,0
2	171261021	rs6751781	T	G	2208.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-5.140e+02;SOR=2.765;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2237,163,0
2	171264091	rs67238460	T	TGCTCTGGATATGAAA	1702.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;RPA=1,2;RU=GCTCTGGATATGAAA;SB=0.00;SOR=4.804;STR;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:12:30:1740,30,0
2	171300575	rs17426211	C	A	750.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.806;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.855;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-0.021;SB=-4.640e+02;SOR=0.816;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,35:76:99:779,0,1113
2	171300648	rs4667639	T	A	789.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=1.073;SB=-3.710e+02;SOR=0.641;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,31:66:99:818,0,965
2	171323328	rs4359605	T	C	681.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;SB=-1.175e+02;SOR=3.056;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:710,51,0
2	171355198	rs6761297	A	G	2716.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.96;SB=-1.388e+03;SOR=1.031;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2745,199,0
2	171355329	rs6733198	G	C	3420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-1.799e+03;SOR=1.140;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3449,247,0
2	171355426	rs6748052	T	C	1991.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-5.470e+02;SOR=2.342;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2020,147,0
2	171356274	rs10185178	G	A	1963.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=-1.250e+03;SOR=0.784;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1992,144,0
2	171356423	rs9752383	T	C	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=-1.256;SB=0.00;SOR=0.941;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:302,0,226
2	171358044	rs10191689	G	A	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.80;ReadPosRankSum=-0.909;SB=-3.100e+01;SOR=0.446;VQSLOD=9.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:121,0,362
2	171358211	rs7593940	G	A	1459.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-7.160e+02;SOR=0.941;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1488,114,0
2	171503330	rs6761488	C	T	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.148;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.685;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=-1.817;SB=-1.580e+02;SOR=1.329;VQSLOD=7.84;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,14:24:99:328,0,284
2	171508056	rs12999176	T	C	615.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.066;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=8.189;HaplotypeScore=5.6951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=0.551;SB=-9.732e-01;SOR=3.327;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:644,0,330
2	171508262	rs6724627	G	A	634.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.566;HaplotypeScore=4.4030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.876;SB=-1.820e+02;SOR=1.172;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,24:53:99:663,0,746
2	171508490	rs10718459	CA	C	400.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;DB;DP=30;ExcessHet=3.0103;FS=5.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;RPA=8,7;RU=A;ReadPosRankSum=0.485;SB=-1.905e+01;SOR=2.494;STR;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,20:30:99:438,0,214
2	171570488	rs7563812	C	G	799.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=-3.850e+02;SOR=0.963;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:63:828,63,0
2	171572940	rs3749036	G	A	923.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-4.140e+02;SOR=1.255;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:952,72,0
2	171627676	rs1861462	T	G	716.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.55;SB=-4.800e+02;SOR=0.922;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:54:745,54,0
2	171632225	rs17694506	C	T	1768.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-9.780e+02;SOR=0.846;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1797,132,0
2	171632385	rs34759682	C	CTT	2697.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;SB=-1.169e+03;SOR=1.067;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2735,144,0
2	171632401	rs13028382	C	T	1563.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-8.720e+02;SOR=0.952;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1592,117,0
2	171634347	rs11334749	TA	T	2055.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SB=-4.890e+02;SOR=2.511;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:47:99:2093,138,0
2	171649402	rs3764916	C	T	1255.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-7.140e+02;SOR=1.005;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:93:1284,93,0
2	171654321	rs7601631	A	G	146.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=-1.593;SB=0.00;SOR=3.056;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,8:10:14:175,0,14
2	171654663	rs2287111	A	C	1262.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-2.471e+02;SOR=3.258;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1291,96,0
2	171818289	rs2557804	G	A	1950.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-1.032e+03;SOR=1.078;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1979,144,0
2	171822466	rs4668356	C	T	3460.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.9518;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-1.614e+03;SOR=1.342;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,116:120:99:3489,268,0
2	171912911	rs17283147	A	T	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.4976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=0.00;SOR=4.804;VQSLOD=7.65;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
2	171913207	rs200719254	CAA	C	332.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.167;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.77;RPA=12,10;RU=A;ReadPosRankSum=0.389;SB=0.00;SOR=2.303;STR;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:3,11:15:16:370,16,0
2	171916371	rs3731990	C	T	446.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=0.00;SOR=5.136;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:475,36,0
2	171916664	rs2676130	A	T	479.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.27;SB=-8.097e+01;SOR=2.985;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:508,39,0
2	172134376	rs6433287	C	T	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=6.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=1.738;SB=-5.800e+01;SOR=0.636;VQSLOD=6.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:99:134,0,177
2	172180771	rs10205459	A	G	1373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-6.320e+02;SOR=1.562;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1402,105,0
2	172291616	rs6751956	C	T	736.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.502;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=13.412;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=-0.095;SB=-1.120e+02;SOR=2.424;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,26:54:99:765,0,673
2	172305175	.	C	CT	235.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;DP=29;ExcessHet=3.0103;FS=7.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.07;RPA=1,2;RU=T;ReadPosRankSum=-0.180;SB=-7.601e+01;SOR=0.074;STR;VQSLOD=5.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,14:29:99:273,0,431
2	172305177	rs192861143	C	T	435.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.581;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.698;HaplotypeScore=14.6355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-0.419;SB=-1.790e+02;SOR=0.257;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,17:30:99:464,0,416
2	172309506	rs3731985	T	A	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.775;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.132;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=-0.155;SB=-7.697e+01;SOR=0.124;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:408,0,314
2	172314644	rs58636477	AT	ATT,A	419.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.352;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.08;RPA=11,12,10;RU=T;ReadPosRankSum=1.341;SB=-5.201e+01;SOR=2.494;STR;VQSLOD=4.83;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,9,12:28:99:457,263,346,228,0,285
2	172329458	rs36112363	G	T	839.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.314;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=1.030;SB=-3.960e+02;SOR=0.769;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,31:81:99:868,0,1342
2	172330393	rs3731983	A	G	451.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.665;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.690;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.114;SB=-5.900e+01;SOR=1.251;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,16:39:99:480,0,673
2	172333295	rs4668387	C	T	565.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.337;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-0.614;SB=-1.690e+02;SOR=0.836;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:594,0,556
2	172336541	rs3731981	C	T	277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.165;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.395;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-0.551;SB=-7.000e+01;SOR=0.233;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:306,0,434
2	172373731	rs200342981	CTTT	C	319.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.66;RPA=17,14;RU=T;ReadPosRankSum=-0.435;SB=-1.483e+02;SOR=0.495;STR;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,11:15:13:357,0,13
2	172379649	rs115283512	C	T	666.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.903;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.948;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-0.899;SB=-5.200e+01;SOR=1.711;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,24:45:99:695,0,649
2	172398311	rs7586144	T	C	473.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.366;HaplotypeScore=2.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=1.833;SB=-2.060e+02;SOR=0.385;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,21:45:99:502,0,685
2	172411273	rs10455	G	A	241.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.953;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=0.119;SB=-1.740e+02;SOR=0.126;VQSLOD=7.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,15:31:99:270,0,543
2	172549248	rs6433311	A	G	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-1.041;SB=-3.876e+01;SOR=0.223;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:240,0,257
2	172563922	rs312925	G	A	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.491;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.816;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=-1.162;SB=-5.300e+01;SOR=1.847;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,14:35:99:394,0,624
2	172564021	rs312924	A	T	43.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.13;ReadPosRankSum=-0.312;SB=0.00;SOR=0.105;VQSLOD=9.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:72:72,0,390
2	172569134	rs5836347	AT	A	61.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.17;RPA=12,11;RU=T;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;STR;VQSLOD=9.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,5:10:99:99,0,116
2	172600716	rs12619041	C	A	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=0.029;SB=-9.400e+01;SOR=0.602;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:265,0,436
2	172642057	rs12692973	C	T	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.792;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.344;SB=0.00;SOR=0.569;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:196,0,205
2	172644229	rs2292813	T	C	3617.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.50;SB=-1.513e+03;SOR=1.524;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3646,265,0
2	172650382	rs6745143	G	A	450.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.126;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-0.520;SB=-6.700e+01;SOR=0.223;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:479,0,458
2	172683461	.	C	CA	130.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=0;MQRankSum=-1.949;QD=8.72;RPA=11,12;RU=A;ReadPosRankSum=-1.677;SB=0.00;SOR=0.818;STR;VQSLOD=1.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:18:99:168,0,134
2	172683481	rs17615262	A	C	111.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=-1.335;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-1.254;SB=0.00;SOR=0.551;VQSLOD=3.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:140,0,213
2	172690418	rs3736499	C	T	397.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.009;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.075;SB=-1.765e+00;SOR=1.402;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:426,0,537
2	172693780	rs3765166	G	A	1430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.724;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.755;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.933;SB=-7.930e+02;SOR=0.607;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,51:96:99:1459,0,1229
2	172693944	rs3765167	A	G	544.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.834;SB=0.00;SOR=0.892;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,17:31:99:573,0,449
2	172709215	rs3770444	G	C	1016.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-6.250e+02;SOR=0.811;VQSLOD=5.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1045,75,0
2	172712480	rs2056202	T	C	911.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-3.250e+02;SOR=2.019;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:31:69:940,69,0
2	172725301	rs1878583	A	G	4421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-2.975e+03;SOR=0.841;VQSLOD=4.81;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4450,316,0
2	172821739	rs1982288	G	T	451.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=0.00;SOR=5.136;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:480,36,0
2	172864845	rs6730085	C	A	256.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=2.113;SB=-2.004e+01;SOR=1.863;VQSLOD=6.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,10:30:99:285,0,524
2	172865009	rs62183782	T	A	590.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.632;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=0.545;SB=-3.590e+02;SOR=0.794;VQSLOD=8.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,27:61:99:619,0,922
2	172926211	rs62183852	T	G	392.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.765;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=10.288;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-1.968;SB=-1.135e+02;SOR=0.033;VQSLOD=6.01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,16:34:99:421,0,631
2	172942448	rs3796058	A	C	200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.803;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=8.239;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=-0.333;SB=-8.297e+01;SOR=0.035;VQSLOD=6.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,10:25:99:229,0,512
2	172944748	rs58045367	G	A	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.947;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=0.123;SB=-9.732e-01;SOR=1.609;VQSLOD=6.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:160,0,298
2	172952532	rs705868	A	C	544.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-2.431e+02;SOR=1.112;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:573,45,0
2	172966250	rs2228184	T	C	1509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-8.610e+02;SOR=0.874;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1538,111,0
2	172967302	rs743605	C	T	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-0.802;SB=-1.430e+02;SOR=0.634;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:58:227,0,58
2	173330117	rs77878620	C	T	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.290;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=0.904;SB=-8.400e+01;SOR=0.790;VQSLOD=7.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,7:23:99:220,0,485
2	173332040	rs75357590	C	A	497.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.835;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=6.435;HaplotypeScore=3.5217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.000;SB=-5.150e-01;SOR=3.070;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:526,0,494
2	173332115	rs2272499	G	A	1087.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.801;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.661;SB=-4.930e+02;SOR=0.592;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,47:101:99:1116,0,1483
2	173332488	rs148823463	G	A	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=-2.097;SB=0.00;SOR=0.976;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:248,0,205
2	173333815	rs16860468	T	G	887.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.980;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.845;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-2.041;SB=-3.530e+02;SOR=0.332;VQSLOD=7.38;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:35,34:69:99:916,0,1052
2	173337519	rs139181030	A	G	1407.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.278;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.743;HaplotypeScore=2.7878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=1.016;SB=-8.620e+02;SOR=0.570;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,55:101:99:1436,0,1288
2	173344474	rs1920979	A	G	709.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.124;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.88;ReadPosRankSum=-1.046;SB=-2.520e+02;SOR=1.329;VQSLOD=7.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,22:34:99:738,0,312
2	173352103	rs2293649	C	T	742.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=2.883;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.90;ReadPosRankSum=1.097;SB=-4.770e+02;SOR=0.427;VQSLOD=7.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:62,32:94:99:771,0,1732
2	173353060	rs1319059	G	A	468.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.486;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-1.014;SB=0.00;SOR=0.836;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:497,0,433
2	173356032	rs61757097	G	C	1860.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=1.519;SB=-1.156e+03;SOR=0.666;VQSLOD=7.86;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,69:140:99:1889,0,1841
2	173362697	rs147900066	C	T	1338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-1.119;SB=-7.160e+02;SOR=0.884;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,49:110:99:1367,0,1630
2	173423575	rs201626926	C	A	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.779;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.85;ReadPosRankSum=1.024;SB=-9.700e+01;SOR=0.303;VQSLOD=5.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,12:36:99:311,0,769
2	173427727	rs74265085	A	T	612.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=0.020;SB=-1.000e+02;SOR=1.109;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,21:32:99:641,0,283
2	173428871	rs80228609	TCTC	T	3090.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQ0=0;MQRankSum=1.228;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.47;RPA=2,1;RU=CTC;ReadPosRankSum=-0.066;SB=-1.265e+03;SOR=0.695;STR;VQSLOD=0.591;culprit=DP	GT:AD:DP:GQ:PL	0/1:90,61:158:99:3128,0,1544
2	173450886	rs373332447	CA	C	153.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;DB;DP=24;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=1.228;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=6.68;RPA=17,16;RU=A;ReadPosRankSum=0.558;SB=-4.126e+00;SOR=1.739;STR;VQSLOD=0.155;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,13:24:99:191,0,169
2	173460803	rs1530864	A	G	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.525;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=0.893;SB=-2.140e+02;SOR=0.191;VQSLOD=7.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,17:31:99:336,0,393
2	173600783	.	C	CG	936.73	PASS	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.10;RPA=1,2;RU=G;SB=-4.610e+02;SOR=0.784;STR;VQSLOD=5.64;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,21:21:63:974,63,0
2	173659913	rs7585729	T	C	612.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-8.297e+01;SOR=3.611;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:641,51,0
2	173662354	rs6433382	A	G	692.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.473;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.639;SB=-2.690e+02;SOR=0.548;VQSLOD=8.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,27:61:99:721,0,959
2	173679371	rs3754766	C	G	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-0.375;SB=0.00;SOR=0.593;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:263,0,306
2	173686663	rs2258180	G	T	2025.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-1.033e+03;SOR=1.044;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2054,154,0
2	173686798	rs2258175	A	G	1909.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-1.179e+03;SOR=0.854;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1938,144,0
2	173782813	.	T	TGCTCTGGTGCCA	3167.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.532;DP=69;ExcessHet=3.0103;FS=9.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.14;RPA=1,2;RU=GCTCTGGTGCCA;ReadPosRankSum=1.725;SB=-1.235e+03;SOR=0.955;STR;VQSLOD=4.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,23:69:99:3205,0,4056
2	173782975	.	CTTT	C	270.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;DP=23;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;RPA=22,19;RU=T;ReadPosRankSum=-0.457;SB=-1.765e+00;SOR=5.136;STR;VQSLOD=5.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,12:23:43:308,0,43
2	173793096	rs3835838	GA	G	196.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;RPA=2,1;RU=A;ReadPosRankSum=0.263;SB=0.00;SOR=0.859;STR;VQSLOD=10.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:12:99:234,0,195
2	173848033	rs73977757	C	T	457.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.621;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.968;HaplotypeScore=4.4940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.082;SB=-1.230e+02;SOR=1.247;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,17:40:99:486,0,634
2	173848429	rs6719635	C	T	607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.903;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.752;HaplotypeScore=2.4677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=-0.233;SB=-1.710e+02;SOR=1.225;VQSLOD=7.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,24:66:99:636,0,1131
2	173849999	rs6727383	G	A	248.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.271;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-0.817;SB=-7.597e+01;SOR=0.086;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:277,0,275
2	173861456	rs5010643	G	C	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-8.097e+01;SOR=2.494;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:410,30,0
2	173865976	.	G	GT	206.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;DP=13;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;RPA=7,8;RU=T;ReadPosRankSum=0.968;SB=-9.451e+01;SOR=0.116;STR;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:73:244,0,73
2	173866117	rs11320644	AC	A	227.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DB;DP=19;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;RPA=7,6;RU=C;ReadPosRankSum=-0.164;SB=-8.400e+01;SOR=1.402;STR;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:265,0,319
2	173866203	rs2028934	C	T	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=1.133;SB=0.00;SOR=1.085;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:210,0,127
2	173879534	rs1992808	C	A	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.835;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-0.331;SB=-3.677e+01;SOR=0.317;VQSLOD=9.66;culprit=SOR	GT:AD:DP:GQ:PL	0/1:8,11:19:99:313,0,278
2	173883713	rs11897801	A	G	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=7.900;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=0.450;SB=-6.829e-02;SOR=2.584;VQSLOD=6.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,9:34:99:255,0,765
2	173885128	rs373490917	A	G	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.88;ReadPosRankSum=-1.955;SB=0.00;SOR=0.914;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:350,0,200
2	173885219	rs371082521	C	G	1233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.885;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.41;ReadPosRankSum=0.145;SB=-3.390e+02;SOR=1.264;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,44:67:99:1262,0,600
2	173885478	rs73017586	A	G	546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.131;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=4.605;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=-1.556;SB=-7.200e+01;SOR=1.417;VQSLOD=6.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,20:57:99:575,0,991
2	174055731	rs2289399	A	G	819.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.566;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.599;SB=-2.830e+02;SOR=0.624;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:848,0,737
2	174068513	rs11899707	G	C	2608.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=-8.510e+02;SOR=2.073;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2637,190,0
2	174074407	rs2289396	A	G	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-0.705;SB=-9.732e-01;SOR=2.303;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:162,0,237
2	174094129	rs10169914	G	C	497.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.05;SB=0.00;SOR=5.283;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:526,39,0
2	174094145	rs10182247	T	C	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=-0.192;SB=-3.500e+01;SOR=1.445;VQSLOD=10.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:280,0,132
2	174094345	rs10193498	A	T	658.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.717;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=-0.119;SB=-2.850e+02;SOR=1.128;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,24:41:99:687,0,456
2	174094500	rs16861404	G	A	413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.810;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=-0.305;SB=-1.790e+02;SOR=0.317;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,15:25:99:442,0,264
2	174097249	.	T	C	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.538;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.10;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=2.387;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:302,0,195
2	174103366	rs3739102	T	C	404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=0.00;SOR=5.136;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:433,36,0
2	174104037	rs72436366	G	GA	65.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.48;RPA=14,15;RU=A;ReadPosRankSum=0.389;SB=-1.772e+00;SOR=1.371;STR;VQSLOD=8.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:13:99:103,0,132
2	174123399	rs820008	A	G	165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.330;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.89;ReadPosRankSum=1.756;SB=-3.200e+01;SOR=0.502;VQSLOD=8.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,7:21:99:194,0,467
2	174128513	rs3769148	C	T	544.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.354;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.617;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-1.337;SB=-2.310e+02;SOR=0.361;VQSLOD=7.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,23:59:99:573,0,1044
2	174130875	.	GTTC	G	2462.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;DP=122;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.23;RPA=2,1;RU=TTC;ReadPosRankSum=0.706;SB=-1.095e+03;SOR=0.894;STR;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:68,48:122:99:2500,0,3835
2	174223675	rs11675433	C	T	420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-8.297e+01;SOR=2.833;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:449,33,0
2	174224355	rs10168943	G	A	707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.10;SB=0.00;SOR=6.091;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:736,57,0
2	174228744	rs1529887	T	C	390.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-7.997e+01;SOR=2.670;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:419,30,0
2	174230153	rs2288993	C	G	1235.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-5.280e+02;SOR=1.666;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:90:1264,90,0
2	174230983	.	G	GT	976.73	PASS	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;RPA=8,9;RU=T;SB=-8.927e+01;SOR=3.737;STR;VQSLOD=4.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1014,104,0
2	174943876	rs3754812	C	T	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.092;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.320;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-0.817;SB=-1.120e+02;SOR=0.525;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:233,0,282
2	175174922	rs7582402	T	C	454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-1.463e+02;SOR=1.609;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:483,36,0
2	175200014	rs34372833	G	A	839.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.892;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=3.304;SB=-1.270e+02;SOR=0.538;VQSLOD=7.45;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:35,30:65:99:868,0,1144
2	175200903	rs35548534	G	C	552.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.0993;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-1.289;SB=-3.570e+02;SOR=0.576;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,24:58:99:581,0,829
2	175202414	rs34763941	C	T	193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.419;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=0.622;SB=-2.801e+01;SOR=1.609;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:222,0,292
2	175263218	rs10930660	A	G	1028.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-1.009;SB=-3.000e+02;SOR=0.606;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,39:72:99:1057,0,986
2	175304621	rs67227536	C	G	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.666;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=7.415;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-0.225;SB=-3.990e+02;SOR=0.193;VQSLOD=6.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,25:63:99:611,0,1105
2	175306804	rs7574442	C	G	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=1.141;SB=-1.640e+02;SOR=0.754;VQSLOD=9.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:268,0,552
2	175310003	rs35783513	A	G	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=0.000;SB=0.00;SOR=0.330;VQSLOD=9.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:121,0,248
2	175311629	rs34770618	T	C	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.40;ReadPosRankSum=0.435;SB=0.00;SOR=1.981;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:12:83:297,0,83
2	175318590	rs12468711	G	T	1724.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.991;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=-1.208;SB=-2.440e+02;SOR=0.653;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,54:81:99:1753,0,717
2	175335076	rs2358637	G	T	708.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=0.00;SOR=5.892;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:737,54,0
2	175426750	rs6732100	A	G	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.004;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=-1.001;SB=-2.910e+02;SOR=0.693;VQSLOD=8.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,28:77:99:705,0,1331
2	175436234	rs1044335	C	T	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-1.244;SB=0.00;SOR=0.465;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:300,0,411
2	175436576	rs112447307	A	C	529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.584;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=-1.371;SB=-1.300e+02;SOR=1.795;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:558,0,400
2	175436940	rs4972450	G	A	1832.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-8.200e+02;SOR=1.532;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1861,135,0
2	175437352	rs2288624	T	A	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.608;SB=0.00;SOR=1.085;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:209,0,118
2	175439512	rs1367218	T	C	1645.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-5.900e+02;SOR=1.835;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1674,120,0
2	175446270	rs13401162	T	C	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.532;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=0.802;SB=-1.090e+02;SOR=0.674;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,19:33:99:565,0,389
2	175613059	rs3816448	A	C	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=-0.499;SB=-1.980e+02;SOR=0.527;VQSLOD=9.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:403,0,277
2	175613115	rs2255918	G	A	888.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.92;SB=-1.613e+02;SOR=3.180;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:917,69,0
2	175613169	rs2305414	A	C	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.507;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=6.039;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-0.494;SB=-1.540e+02;SOR=0.142;VQSLOD=7.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,21:52:99:541,0,929
2	175613600	rs2646159	T	C	372.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=0.00;SOR=4.804;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:401,30,0
2	175614908	.	CAA	C	1181.73	PASS	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.14;RPA=17,15;RU=A;SB=-2.350e+02;SOR=2.753;STR;VQSLOD=4.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:10,37:59:85:1075,85,0
2	175622788	rs2646164	G	A	573.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-1.205e+02;SOR=2.833;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:602,45,0
2	175629021	rs7560774	C	A	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.408;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=-0.887;SB=-2.450e+02;SOR=0.700;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,18:47:99:452,0,810
2	175677022	rs12613075	C	T	2255.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-8.970e+02;SOR=1.708;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2284,169,0
2	175979684	rs62184471	A	G	785.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.282;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=-1.061;SB=-1.160e+02;SOR=0.227;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,27:46:99:814,0,595
2	176045832	rs268226	C	A	1008.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=0.00;SOR=6.869;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1037,81,0
2	176046257	rs268227	C	T	559.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-4.276e+01;SOR=4.174;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:588,45,0
2	176190259	rs6729868	T	C	466.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-2.161e+02;SOR=1.244;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:495,36,0
2	176866967	rs935492	C	T	81.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=-0.411;SB=-1.765e+00;SOR=1.329;VQSLOD=8.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:99:110,0,182
2	176964375	rs114010776	G	T	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=1.557;SB=0.00;SOR=0.914;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:327,0,256
2	176964904	rs847151	G	A	897.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=2.9972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=0.815;SB=-2.720e+02;SOR=1.066;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,31:61:99:926,0,837
2	176981343	rs7601234	G	T	311.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=0.159;SB=-4.076e+01;SOR=1.981;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,10:11:7:339,0,7
2	176988015	rs711821	C	A	488.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.844;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=-1.166;SB=-2.890e+02;SOR=0.804;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,17:25:99:517,0,213
2	176988290	rs35578003	C	CGCA	780.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DB;DP=46;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.04;RPA=4,5;RU=GCA;ReadPosRankSum=-0.174;SB=-2.420e+02;SOR=1.270;STR;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,16:46:99:818,0,1270
2	176995262	rs7580746	C	T	319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.787;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.151;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=-3.023;SB=-1.150e+02;SOR=1.302;VQSLOD=6.89;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,12:31:99:348,0,586
2	176996023	rs4972804	C	T	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.6211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.516;SB=-1.030e+02;SOR=0.569;VQSLOD=10.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:245,0,157
2	177014970	rs1867863	G	T	1064.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.35;SB=-3.210e+02;SOR=2.093;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1093,81,0
2	177036211	rs2857535	G	A	1146.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-2.640e+02;SOR=2.649;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1175,87,0
2	177036754	rs1051929	T	C	5219.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;SB=-3.021e+03;SOR=0.797;VQSLOD=4.57;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,160:160:99:5248,379,0
2	177107092	rs1851790	G	C	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=6.892;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.48;ReadPosRankSum=0.091;SB=-1.352e-01;SOR=2.815;VQSLOD=6.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:94:94,0,258
2	177107273	rs10930724	T	C	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.571;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=1.502;SB=-1.760e+02;SOR=1.022;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:362,0,296
2	177107356	rs10208410	A	G	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.537;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=0.237;SB=-2.290e+02;SOR=0.420;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,19:30:99:503,0,299
2	177193439	rs72925142	G	A	999.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=0.00;SOR=6.593;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1028,78,0
2	177497490	rs2969362	C	T	405.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.05;SB=0.00;SOR=4.977;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:434,33,0
2	177497614	rs2922313	A	G	1631.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-6.180e+02;SOR=1.609;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1660,123,0
2	177497751	rs2922314	G	A	1994.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-9.720e+02;SOR=1.263;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2023,150,0
2	177497817	rs2969361	A	C	1199.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-5.080e+02;SOR=1.721;VQSLOD=6.42;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,42:42:87:1228,87,0
2	178062900	rs3109084	G	A	337.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=-1.603e+02;SOR=1.445;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:366,27,0
2	178085137	rs9068	G	A	520.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.04;SB=-2.700e+02;SOR=1.127;VQSLOD=4.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:39:549,39,0
2	178095834	rs369998189	C	T	1028.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.490;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.59;ReadPosRankSum=2.600;SB=-1.620e+02;SOR=0.558;VQSLOD=6.21;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,32:62:99:1057,0,900
2	178178466	rs1453376	T	C	1485.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-9.450e+02;SOR=0.735;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1514,108,0
2	178257582	.	C	G	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.233;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-1.440;SB=-1.195e+02;SOR=0.093;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:99:189,0,100
2	178301428	rs3754989	C	T	835.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.25;SB=-8.097e+01;SOR=3.912;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:864,66,0
2	178307330	rs4893951	C	T	504.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=0.00;SOR=5.421;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:533,42,0
2	178326838	rs1979059	C	G	427.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-8.097e+01;SOR=2.833;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:456,33,0
2	178326847	rs1979058	G	A	386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-4.176e+01;SOR=3.442;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:415,30,0
2	178358072	rs1348849	C	T	1349.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=-3.600e+02;SOR=2.362;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1378,105,0
2	178417142	rs11694988	C	T	2061.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-7.190e+02;SOR=1.727;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2090,157,0
2	178417225	rs11695035	C	T	2729.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.45;SB=-7.170e+02;SOR=2.272;VQSLOD=3.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2758,208,0
2	178481818	rs10497497	G	T	4090.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-2.305e+03;SOR=0.693;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4119,322,0
2	178494173	rs67772336	G	GGGA	1582.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;RPA=2,3;RU=GGA;SB=-4.520e+02;SOR=1.863;STR;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1620,84,0
2	178528703	rs13025391	C	T	2509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-1.229e+03;SOR=1.236;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2538,187,0
2	178528789	rs13025904	G	A	1366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-3.870e+02;SOR=2.303;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1395,105,0
2	178534110	rs2222711	G	T	763.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=0.00;SOR=6.091;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:792,60,0
2	178534324	rs6433687	A	G	1437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-7.910e+02;SOR=1.112;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1466,105,0
2	178540293	rs3770016	A	G	1738.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=-1.140e+03;SOR=0.760;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1767,129,0
2	178545713	rs4538242	C	T	531.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-1.115e+02;SOR=2.049;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:560,42,0
2	178561865	rs2365623	T	C	583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.86;SB=0.00;SOR=5.670;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:612,45,0
2	178561947	rs2886424	G	C	2255.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-1.851e+02;SOR=4.479;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2284,169,0
2	178565815	rs10201180	T	C	3394.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-1.786e+03;SOR=0.970;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3423,259,0
2	178681716	rs1438059	G	C	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=16.346;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=0.642;SB=-8.639e+00;SOR=3.611;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,12:32:99:361,0,580
2	178769992	rs2695096	T	C	744.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=0.00;SOR=5.994;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:773,57,0
2	178863260	rs2117738	G	A	573.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.91;SB=-4.700e+02;SOR=0.693;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:42:602,42,0
2	178879181	rs76308115	G	A	640.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.694;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-0.093;SB=-1.550e+02;SOR=0.811;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,25:55:99:669,0,824
2	178936373	rs1435573	T	G	3909.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.779e+03;SOR=1.304;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3938,289,0
2	178936614	rs6433711	C	T	2902.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.586e+03;SOR=0.836;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2931,217,0
2	178977620	rs2276622	C	G	1070.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.047;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-0.581;SB=-1.010e+02;SOR=0.664;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,35:71:99:1099,0,1150
2	178986130	.	TACACACACAC	T	980.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=-0.464;POSITIVE_TRAIN_SITE;QD=21.02;RPA=20,15;RU=AC;ReadPosRankSum=1.317;SB=0.00;SOR=1.329;STR;VQSLOD=3.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,9:17:99:1018,0,499
2	179203797	rs1434087	G	A	2045.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-1.375e+03;SOR=0.721;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2074,147,0
2	179236831	rs6433724	A	G	705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-8.197e+01;SOR=3.716;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:734,54,0
2	179238507	rs7595571	T	C	2348.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-1.072e+03;SOR=1.194;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2377,178,0
2	179238841	rs10190530	A	G	3024.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-7.590e+02;SOR=2.610;VQSLOD=5.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3053,226,0
2	179256031	rs139249350	C	T	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.352;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-0.342;SB=0.00;SOR=0.892;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:341,0,306
2	179260382	rs2304340	A	G	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.914;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.231;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=0.268;SB=-9.402e+01;SOR=0.193;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:453,0,352
2	179260653	rs34253857	A	G	821.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.175;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-1.551;SB=-4.190e+02;SOR=0.826;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:850,0,747
2	179296666	rs3997877	T	C	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.444;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.300;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-0.345;SB=-7.300e+01;SOR=0.076;VQSLOD=5.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,9:28:99:250,0,634
2	179296821	rs3997876	G	A	1511.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.115;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.00;ReadPosRankSum=0.204;SB=-7.380e+02;SOR=0.693;VQSLOD=5.49;culprit=DP	GT:AD:DP:GQ:PL	0/1:124,65:189:99:1540,0,3562
2	179300971	.	G	A	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.261;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.05;ReadPosRankSum=1.143;SB=-3.290e+02;SOR=0.693;VQSLOD=4.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:103,28:131:99:559,0,3027
2	179300979	rs77419724	A	T	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=1.753;HaplotypeScore=2.7742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.73;ReadPosRankSum=1.707;SB=-2.470e+02;SOR=0.907;VQSLOD=4.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:105,27:132:99:521,0,2907
2	179309165	.	G	A	733.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;DP=76;Dels=0.00;ExcessHet=3.0103;FS=3.304;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-4.522;SB=-2.920e+02;SOR=1.220;VQSLOD=3.73;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:50,26:76:99:762,0,1308
2	179315734	rs141354030	GGC	G	782.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;DB;DP=30;ExcessHet=3.0103;FS=12.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.09;RPA=2,1;RU=GC;ReadPosRankSum=-2.437;SB=-1.680e+02;SOR=2.258;STR;VQSLOD=5.14;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,18:30:99:820,0,540
2	179315757	rs9406386	T	G	611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=12.035;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.39;ReadPosRankSum=-0.108;SB=-1.320e+02;SOR=2.258;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:640,0,319
2	179315781	rs62176113	C	T	608.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.637;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=9.423;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.64;ReadPosRankSum=2.482;SB=-1.550e+02;SOR=2.145;VQSLOD=4.45;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,21:31:99:637,0,293
2	179315890	.	G	C	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-0.457;SB=-3.200e+01;SOR=1.371;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:171,0,221
2	179315903	.	G	C	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.187;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-1.400;SB=-2.901e+01;SOR=1.371;VQSLOD=5.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:157,0,253
2	179319677	rs79690262	C	T	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.349;SB=-9.900e+01;SOR=0.148;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:178,0,127
2	179337628	.	G	GT	69.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.49;RPA=16,17;RU=T;ReadPosRankSum=1.321;SB=0.00;SOR=0.197;STR;VQSLOD=7.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:21:99:107,0,190
2	179363807	.	A	AT	106.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.21;RPA=9,10;RU=T;ReadPosRankSum=-0.344;SB=0.00;SOR=0.569;STR;VQSLOD=9.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,6:14:99:144,0,147
2	179391639	.	C	CT	112.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;RPA=8,9;RU=T;ReadPosRankSum=-1.063;SB=0.00;SOR=0.859;STR;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:150,0,104
2	179395958	rs3813250	T	C	1342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.447;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=7.153;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.143;SB=-7.570e+02;SOR=0.956;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,55:112:99:1371,0,1665
2	179403750	rs4894028	C	T	3053.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.742;DB;DP=217;Dels=0.00;ExcessHet=3.0103;FS=3.961;HaplotypeScore=2.7463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-1.741;SB=-1.609e+03;SOR=0.466;VQSLOD=5.36;culprit=DP	GT:AD:DP:GQ:PL	0/1:103,114:217:99:3082,0,2851
2	179406003	rs3731750	C	A	1168.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.522;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.970;SB=-4.160e+02;SOR=0.596;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,47:94:99:1197,0,1312
2	179407763	.	C	CT	134.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;DP=59;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.54;RPA=15,16;RU=T;ReadPosRankSum=1.324;SB=-1.905e+01;SOR=0.922;STR;VQSLOD=3.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,13:59:99:172,0,718
2	179408713	rs62621236	A	G	1419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.276;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=2.520;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-0.603;SB=-7.910e+02;SOR=0.974;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,54:105:99:1448,0,1311
2	179414318	rs747122	C	T	1092.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.122;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=2.000;SB=-5.780e+02;SOR=0.597;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,38:76:99:1121,0,1063
2	179416556	rs11897366	A	C	1114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.527;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=3.915;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.084;SB=-6.190e+02;SOR=0.405;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,42:91:99:1143,0,1407
2	179421609	rs9808036	C	T	959.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.999;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=0.211;SB=-3.440e+02;SOR=0.951;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,37:64:99:988,0,693
2	179421694	rs9808377	A	G	1388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.004;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=-0.059;SB=-8.080e+02;SOR=0.737;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,50:84:99:1417,0,969
2	179427186	rs2366751	A	G	1647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=1.522;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.432;SB=-7.880e+02;SOR=0.503;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,62:117:99:1676,0,1426
2	179427536	rs3829746	T	C	1355.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=1.489;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.256;SB=-7.450e+02;SOR=0.884;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,55:113:99:1384,0,1500
2	179432185	rs12463674	A	G	1551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.618;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.542;SB=-7.740e+02;SOR=0.936;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,56:116:99:1580,0,1581
2	179435337	rs6732060	T	G	1429.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.679;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=3.297;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-1.009;SB=-8.620e+02;SOR=0.446;VQSLOD=7.83;culprit=DP	GT:AD:DP:GQ:PL	0/1:61,60:121:99:1458,0,1562
2	179438866	rs10164753	C	T	1080.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-0.941;SB=-6.150e+02;SOR=0.769;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,40:72:99:1109,0,872
2	179440029	rs12464787	G	A	2410.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.699;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=0.682;SB=-1.351e+03;SOR=0.620;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,87:128:99:2439,0,1159
2	179443217	rs3769864	T	G	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.095;SB=0.00;SOR=0.368;VQSLOD=10.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:296,0,479
2	179443540	rs10497517	A	G	2476.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.152;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.572;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=-0.143;SB=-1.245e+03;SOR=0.630;VQSLOD=7.16;culprit=DP	GT:AD:DP:GQ:PL	0/1:83,87:170:99:2505,0,2229
2	179444768	rs4145333	C	G	2866.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-1.701e+03;SOR=0.716;VQSLOD=6.45;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2895,214,0
2	179447848	rs4894029	T	C	1179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.210;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=1.603;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.109;SB=-7.230e+02;SOR=0.906;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,50:101:99:1208,0,1492
2	179448967	rs375215121	A	AAAC	374.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQ0=0;MQRankSum=1.416;QD=12.09;RPA=4,5;RU=AAC;ReadPosRankSum=0.661;SB=-6.400e+01;SOR=0.674;STR;VQSLOD=2.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,11:31:99:412,0,907
2	179451420	rs2042996	G	A	1313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.072;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=2.458;HaplotypeScore=3.5672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.656;SB=-8.030e+02;SOR=0.462;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,51:113:99:1342,0,1660
2	179454394	rs1560221	A	G	1385.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.145;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=2.461;HaplotypeScore=3.5198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.758;SB=-8.140e+02;SOR=0.828;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,55:109:99:1414,0,1523
2	179455207	rs2163009	T	C	1272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.579;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=6.584;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.473;SB=-5.560e+02;SOR=1.040;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,47:95:99:1301,0,1311
2	179462142	rs6712785	A	G	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.706;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.102;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=0.127;SB=-1.765e+00;SOR=2.694;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:344,0,224
2	179462494	rs35833641	A	G	1150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.734;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.193;SB=-5.260e+02;SOR=0.929;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,45:90:99:1179,0,1154
2	179464527	rs1001238	T	C	1408.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=6.309;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.054;SB=-8.580e+02;SOR=0.327;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,57:106:99:1437,0,1404
2	179477332	rs34928195	AT	A	355.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;DB;DP=35;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.48;RPA=11,10;RU=T;ReadPosRankSum=0.020;SB=-1.650e+02;SOR=0.850;STR;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:35:99:393,0,239
2	179479741	rs16866416	G	A	622.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.142;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-1.874;SB=-2.060e+02;SOR=0.551;VQSLOD=9.12;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,24:47:99:651,0,636
2	179486166	.	TTAGAAATAAA	T	5374.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.779;DP=92;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.32;ReadPosRankSum=2.346;SB=-2.487e+03;SOR=0.471;VQSLOD=5.60;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:45,43:92:99:5412,0,5708
2	179486178	.	G	GT	1010.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.551;DP=89;ExcessHet=3.0103;FS=4.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.36;ReadPosRankSum=2.066;SB=-4.540e+02;SOR=0.385;VQSLOD=5.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:46,43:89:99:1048,0,1868
2	179486179	.	A	T	1288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.309;DP=90;Dels=0.00;ExcessHet=3.0103;FS=4.050;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.32;ReadPosRankSum=1.889;SB=-7.170e+02;SOR=0.357;VQSLOD=6.08;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1317,0,1189
2	179498303	rs16866425	T	C	737.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.680;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=14.215;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.029;SB=-2.360e+02;SOR=1.793;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,28:61:99:766,0,985
2	179498926	rs368370733	T	C	97.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-0.743;SB=-1.765e+00;SOR=0.804;VQSLOD=8.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:126,0,318
2	179499038	rs7590037	A	G	624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.678;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=1.406;SB=-2.540e+02;SOR=0.804;VQSLOD=8.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,27:70:99:653,0,1162
2	179510833	rs185968622	A	T	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=61.07;MQ0=0;MQRankSum=-0.524;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=-1.718;SB=0.00;SOR=0.412;VQSLOD=2.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:118,0,193
2	179511767	rs375648400	GTATA	G	554.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;DB;DP=30;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=0.000;QD=14.86;RPA=11,9;RU=TA;ReadPosRankSum=0.091;SB=-2.870e+02;SOR=0.293;STR;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:30:99:549,0,467
2	179513923	rs7606485	A	T	987.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.708;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=2.297;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.754;SB=-2.880e+02;SOR=0.446;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,38:76:99:1016,0,1053
2	179528335	rs10204913	T	C	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-0.304;SB=-1.060e+02;SOR=0.976;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:311,0,308
2	179528378	rs2163008	C	T	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.526;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.513;SB=-1.650e+02;SOR=0.627;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,12:27:99:345,0,399
2	179528989	rs2562848	C	T	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=-0.260;SB=-1.090e+02;SOR=1.002;VQSLOD=10.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:322,0,144
2	179531856	rs10221760	G	A	542.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.002;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=0.807;SB=-1.330e+02;SOR=0.713;VQSLOD=9.47;culprit=SOR	GT:AD:DP:GQ:PL	0/1:11,20:31:99:571,0,331
2	179539903	rs2472751	C	A	783.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.928;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.138;HaplotypeScore=4.5976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-1.092;SB=-3.280e+02;SOR=1.051;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,31:66:99:812,0,955
2	179539963	rs13398590	T	C	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.090;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.560;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=1.423;SB=-8.600e+01;SOR=1.292;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,15:34:99:389,0,495
2	179541899	rs2742351	C	G	1757.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.82;SB=-1.183e+03;SOR=0.793;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1786,126,0
2	179542233	rs2742349	G	A	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.943;SB=-1.765e+00;SOR=1.981;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:305,0,231
2	179545859	rs36051007	C	T	1301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=3.789;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-1.433;SB=-6.680e+02;SOR=1.101;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,50:100:99:1330,0,1258
2	179547293	rs4894034	G	A	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=-1.267;SB=0.00;SOR=0.836;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:241,0,183
2	179548695	rs372078760	AT	A	157.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.165;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.11;RPA=16,15;RU=T;ReadPosRankSum=0.000;SB=-5.097e+01;SOR=0.693;STR;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,10:12:1:192,1,0
2	179553730	.	ATT	A	343.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;DP=42;ExcessHet=3.0103;FS=11.826;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=0.000;QD=9.05;RPA=24,22;RU=T;ReadPosRankSum=-1.165;SB=-1.600e+02;SOR=0.032;STR;VQSLOD=4.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,18:42:99:381,0,367
2	179553917	rs2627038	G	A	1034.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.403;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.791;SB=-5.040e+02;SOR=0.809;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,39:73:99:1063,0,990
2	179554305	rs2244492	C	T	1213.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-6.130e+02;SOR=1.347;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:90:1242,90,0
2	179558366	rs2042995	T	C	718.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.005;HaplotypeScore=3.5364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=1.260;SB=-2.970e+02;SOR=0.859;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,31:59:99:747,0,704
2	179566146	rs2251987	T	G	1539.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-4.380e+02;SOR=2.400;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1568,117,0
2	179566802	.	T	TA	850.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.42;RPA=10,11;RU=A;ReadPosRankSum=0.716;SB=-2.770e+02;SOR=0.713;STR;VQSLOD=7.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:60,41:107:99:888,0,1227
2	179567431	rs368136221	A	C	1133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.707;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.12;ReadPosRankSum=-0.318;SB=-3.080e+02;SOR=0.662;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,44:75:99:1162,0,858
2	179576596	rs2742331	A	T	626.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=5.097;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-0.241;SB=-2.650e+02;SOR=0.221;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,26:45:99:655,0,543
2	179578730	rs2562839	G	A	1166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.286;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=5.560;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-0.400;SB=-4.720e+02;SOR=1.418;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1195,0,1244
2	179579093	rs12693164	T	C	1229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.755;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.0340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-0.180;SB=-7.880e+02;SOR=0.613;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,46:92:99:1258,0,1258
2	179579212	rs2562838	T	C	982.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.386;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.440;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-0.941;SB=-3.950e+02;SOR=1.214;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,35:77:99:1011,0,1217
2	179579822	rs2562836	T	A	1543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=4.427;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-1.033;SB=-6.060e+02;SOR=1.157;VQSLOD=7.35;culprit=DP	GT:AD:DP:GQ:PL	0/1:68,58:126:99:1572,0,1886
2	179580093	rs12622914	A	C	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.202;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=1.379;SB=-6.200e+01;SOR=1.329;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:269,0,332
2	179580583	rs2562834	T	C	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.938;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=1.298;SB=-5.900e+01;SOR=0.760;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:342,0,497
2	179582537	rs2627043	G	T	1065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=2.966;HaplotypeScore=3.6729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.706;SB=-6.140e+02;SOR=0.419;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,41:83:99:1094,0,1247
2	179585266	rs2562831	C	T	2181.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-1.163e+03;SOR=1.022;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2210,163,0
2	179585393	rs2562830	A	G	473.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.960;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=6.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-1.554;SB=-5.800e+01;SOR=2.093;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:502,0,539
2	179587546	rs16866473	A	G	968.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.111;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=3.049;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=0.250;SB=-6.060e+02;SOR=0.486;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,37:78:99:997,0,1078
2	179587687	rs2742327	T	C	713.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.758;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.143;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-1.031;SB=-3.160e+02;SOR=1.109;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,25:68:99:742,0,1184
2	179589241	rs17355446	G	A	686.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.611;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=0.019;SB=-3.970e+02;SOR=0.680;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,28:67:99:715,0,1136
2	179592724	rs2627042	A	G	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-0.352;SB=-3.200e+01;SOR=1.179;VQSLOD=10.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:169,0,203
2	179593352	rs11888217	C	T	1480.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.968;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=-0.211;SB=-8.510e+02;SOR=0.625;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,54:99:99:1509,0,1263
2	179595577	.	G	GT	460.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;DP=50;ExcessHet=3.0103;FS=4.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;RPA=11,12;RU=T;ReadPosRankSum=-1.271;SB=-2.180e+02;SOR=0.285;STR;VQSLOD=7.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,24:50:99:498,0,454
2	179596317	rs371785683	G	A	487.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.407;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=9.873;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-1.656;SB=-8.100e+01;SOR=2.270;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,17:40:99:516,0,755
2	179600563	rs2742348	G	A	2847.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-1.646e+03;SOR=0.791;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2876,214,0
2	179606538	rs2627037	G	A	1415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=11.882;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-0.355;SB=-4.980e+02;SOR=1.627;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,50:98:99:1444,0,1350
2	179612315	rs145581345	T	C	1065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.134;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=2.915;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.84;ReadPosRankSum=0.542;SB=-7.010e+02;SOR=0.423;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,41:83:99:1094,0,1140
2	179612373	rs72648908	A	C	1171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.313;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=2.948;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.79;ReadPosRankSum=0.759;SB=-5.780e+02;SOR=0.875;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1200,0,1037
2	179612800	rs142132973	A	G	1233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.336;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=2.1010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.59;ReadPosRankSum=-0.998;SB=-7.480e+02;SOR=0.502;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,45:98:99:1262,0,1449
2	179614952	rs10803917	A	G	3025.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-1.834e+03;SOR=0.758;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3054,220,0
2	179615887	rs922984	T	C	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.885;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=6.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.46;ReadPosRankSum=1.657;SB=-9.200e+01;SOR=1.832;VQSLOD=6.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,15:56:99:390,0,1206
2	179615931	rs922985	C	G	2115.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=-1.222e+03;SOR=0.725;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2144,157,0
2	179615994	rs922986	T	C	2303.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-1.315e+03;SOR=0.801;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2332,175,0
2	179616770	rs58651353	GA	G	304.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQ0=0;MQRankSum=1.838;POSITIVE_TRAIN_SITE;QD=6.62;RPA=15,14;RU=A;ReadPosRankSum=0.022;SB=-7.200e+01;SOR=0.760;STR;VQSLOD=2.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,20:50:99:342,0,537
2	179618019	rs3754953	T	A	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-0.078;SB=0.00;SOR=0.446;VQSLOD=9.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:164,0,214
2	179620951	rs7585334	C	T	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.113;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-0.840;SB=-1.940e+02;SOR=0.711;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,24:55:99:684,0,832
2	179621477	rs6433728	C	T	1232.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-5.790e+02;SOR=1.022;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1261,93,0
2	179623758	rs2291310	C	T	951.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.153;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.009;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=1.386;SB=-4.390e+02;SOR=0.924;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,35:61:99:980,0,597
2	179623939	rs6705594	T	C	1216.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-4.060e+02;SOR=2.133;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1245,96,0
2	179629363	rs4894043	T	C	5984.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-3.115e+03;SOR=1.054;VQSLOD=4.21;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,185:187:99:6013,433,0
2	179629461	rs2291311	C	T	1568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.269;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=0.179;SB=-5.660e+02;SOR=0.696;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,57:108:99:1597,0,1339
2	179631214	rs2291312	T	C	2276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=11.100;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=3.838;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.849;SB=-1.394e+03;SOR=0.438;VQSLOD=7.65;culprit=DP	GT:AD:DP:GQ:PL	0/1:70,82:152:99:2305,0,1910
2	179631364	rs140501763	AC	A	956.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.943;DB;DP=58;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=0.888;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-1.464;SB=-1.690e+02;SOR=1.154;VQSLOD=0.049;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,33:58:99:994,0,945
2	179632496	rs4893853	T	C	832.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.396;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.664;SB=-2.740e+02;SOR=0.868;VQSLOD=9.02;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:35,32:67:99:861,0,974
2	179632710	rs2291313	T	C	1080.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.673;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=-0.835;SB=-5.900e+02;SOR=0.889;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,39:73:99:1109,0,1042
2	179633277	rs72647887	C	T	328.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.567;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=-1.315;SB=0.00;SOR=0.693;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:357,0,381
2	179633298	rs4471922	G	T	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.339;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.230;SB=-1.765e+00;SOR=1.721;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:474,0,458
2	179633644	rs4894045	G	C	510.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.545;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=1.415;SB=-1.340e+02;SOR=0.927;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:539,0,668
2	179634376	rs72125115	GTA	G	1514.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.551;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.75;MQ0=0;MQRankSum=0.380;POSITIVE_TRAIN_SITE;QD=30.84;RPA=8,7;RU=TA;ReadPosRankSum=-1.301;SB=-2.381e+02;SOR=1.931;STR;VQSLOD=3.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,39:43:74:1552,74,0
2	179635882	rs4894047	C	T	1470.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=0.00;SOR=7.378;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1499,114,0
2	179638721	rs4894048	C	T	1628.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.224;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=1.552;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=-0.283;SB=-9.670e+02;SOR=0.515;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,61:110:99:1657,0,1367
2	179642425	rs719201	G	A	2532.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-1.170e+03;SOR=1.236;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2561,190,0
2	179643886	rs2291302	A	G	2187.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=-1.050e+03;SOR=1.010;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2216,172,0
2	179643934	rs2291301	A	G	2212.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9956;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-1.045e+03;SOR=1.092;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2241,163,0
2	179644035	rs1552280	G	A	2286.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-9.930e+02;SOR=1.394;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2315,172,0
2	179644855	rs10497520	T	C	518.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.078;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.01;ReadPosRankSum=0.474;SB=-3.110e+02;SOR=0.775;VQSLOD=8.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,24:74:99:547,0,1185
2	179645673	rs148005498	G	A	644.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.375;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.279;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.658;SB=-2.390e+02;SOR=0.492;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:673,0,527
2	179650701	rs6715406	C	T	1371.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.187;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=3.159;HaplotypeScore=3.9986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-1.162;SB=-8.150e+02;SOR=0.647;VQSLOD=7.39;culprit=DP	GT:AD:DP:GQ:PL	0/1:80,55:135:99:1400,0,2253
2	179650954	rs6715901	G	A	515.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=-1.418;SB=-2.340e+02;SOR=0.458;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,22:49:99:544,0,783
2	179654313	rs13421990	A	G	905.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=1.729;SB=-5.210e+02;SOR=0.569;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,35:78:99:934,0,1096
2	179664050	rs66733621	A	G	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=1.465;SB=0.00;SOR=1.085;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:217,0,124
2	179667090	rs3816849	C	T	2400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-7.730e+02;SOR=1.965;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2429,187,0
2	179682445	rs67494185	CAT	C	1255.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.296;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=0.578;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=-0.349;SB=-1.780e+02;SOR=0.836;VQSLOD=3.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,27:52:99:1293,0,1229
2	179682468	rs67301150	T	TTTTC	569.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=-0.909;POSITIVE_TRAIN_SITE;QD=19.42;RPA=1,2;RU=TTTC;ReadPosRankSum=-0.164;SB=0.00;SOR=0.693;STR;VQSLOD=3.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,11:33:99:607,0,549
2	179702268	rs1032283	A	G	3618.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-1.884e+03;SOR=1.054;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3647,268,0
2	179702577	.	A	AGG	520.73	PASS	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.10;RPA=2,4;RU=G;SB=-1.060e+02;SOR=2.494;STR;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:12:33:558,33,0
2	179732980	rs10165177	A	G	771.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-2.471e+02;SOR=2.124;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:800,57,0
2	179753245	rs7573293	C	T	1933.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-7.100e+02;SOR=1.773;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1962,144,0
2	179753549	rs1873164	G	A	1345.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-1.971e+02;SOR=3.500;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1374,102,0
2	179783696	rs12467323	C	A	1068.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-7.797e+01;SOR=4.615;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:87:1097,87,0
2	179809500	rs9677932	C	T	396.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-4.276e+01;SOR=3.442;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:425,33,0
2	179825838	rs11303440	TG	T	2164.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.55;RPA=2,1;RU=G;SB=-7.560e+02;SOR=1.863;STR;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:59:99:2202,175,0
2	179826241	rs6725028	A	G	1275.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=0.00;SOR=7.054;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:34:99:1304,99,0
2	179839728	rs143596162	A	G	504.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.899;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-0.940;SB=-2.190e+02;SOR=0.169;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,20:36:99:533,0,499
2	179914640	rs61397643	G	A	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.473;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=1.607;SB=-8.000e+01;SOR=1.460;VQSLOD=7.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,10:29:99:323,0,471
2	179914649	rs115554157	G	A	450.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=-1.004;SB=-3.140e+02;SOR=0.283;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,18:27:99:479,0,301
2	179977723	rs17454087	C	G	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=-0.538;SB=-3.200e+01;SOR=1.981;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:328,0,171
2	179980070	rs2044479	G	A	319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.929;SB=0.00;SOR=1.061;VQSLOD=10.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:348,0,228
2	179982125	rs3217565	AAGAT	A	317.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;RPA=2,1;RU=AGAT;ReadPosRankSum=1.508;SB=-1.764e+00;SOR=0.963;STR;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:18:99:355,0,727
2	179988395	.	T	TA	489.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.352;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.26;RPA=13,14;RU=A;ReadPosRankSum=0.236;SB=-6.097e+01;SOR=2.494;STR;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,21:24:42:527,42,0
2	179989039	rs2289992	G	A	479.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-1.247;SB=-3.301e+01;SOR=1.426;VQSLOD=10.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,16:25:99:508,0,248
2	179997177	rs3214766	AT	A	211.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.14;RPA=6,5;RU=T;ReadPosRankSum=1.273;SB=-2.203e+01;SOR=0.871;STR;VQSLOD=8.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,11:30:99:249,0,410
2	180039068	rs13013868	C	T	1756.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-4.800e+02;SOR=2.480;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1785,135,0
2	180047746	rs1446673	G	C	3228.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-8.970e+02;SOR=2.502;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3256,238,0
2	180047908	rs6757681	T	C	3787.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-1.226e+03;SOR=2.066;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3816,277,0
2	180048071	rs12693176	T	C	418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=0.00;SOR=4.977;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:447,33,0
2	180308335	rs10171283	C	G	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.230;SB=-2.901e+01;SOR=0.693;VQSLOD=10.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:350,0,349
2	180311207	rs2271760	G	A	383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.794;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-0.552;SB=-7.000e+01;SOR=0.892;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:412,0,338
2	180348245	rs2271759	T	G	355.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.375;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=-0.875;SB=0.00;SOR=0.892;VQSLOD=10.52;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:384,0,281
2	180383498	rs4567894	C	A	518.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=0.00;SOR=5.421;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:547,42,0
2	180448523	rs11695089	A	G	1154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.078;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-0.555;SB=-2.320e+02;SOR=0.834;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,36:64:99:1183,0,781
2	180725481	rs259816	T	C	302.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-1.583e+02;SOR=1.270;VQSLOD=5.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:331,24,0
2	180810180	rs6433817	C	T	905.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-5.100e+02;SOR=0.976;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:69:934,69,0
2	180810264	rs6433818	A	T	1064.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-5.920e+02;SOR=0.880;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1093,81,0
2	180815528	rs2304858	A	T	2235.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-1.148e+03;SOR=1.066;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2264,169,0
2	180830958	rs6733426	A	G	1068.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.95;SB=-4.276e+01;SOR=5.283;VQSLOD=3.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1097,81,0
2	180835589	rs4894140	A	G	2634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9687;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-1.304e+03;SOR=0.859;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2663,202,0
2	180835792	rs3768837	T	A	3250.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-1.310e+03;SOR=1.609;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3279,244,0
2	180837722	rs6433820	T	C	622.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.81;SB=0.00;SOR=5.784;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:651,48,0
2	180837806	rs6433821	T	A	2883.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-6.740e+02;SOR=2.706;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2912,223,0
2	180843126	rs2367990	C	T	1013.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.85;SB=-1.145e+02;SOR=3.767;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1042,78,0
2	180846743	rs3738943	G	T	1412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-3.990e+02;SOR=2.356;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1441,111,0
2	182344846	.	G	GT	117.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;DP=20;ExcessHet=3.0103;FS=8.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.54;RPA=10,11;RU=T;ReadPosRankSum=0.045;SB=-9.515e+00;SOR=2.564;STR;VQSLOD=6.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:20:99:155,0,235
2	182350447	rs155102	A	G	56.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.16;ReadPosRankSum=-0.285;SB=0.00;SOR=0.180;VQSLOD=9.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:85:85,0,267
2	182350743	rs155103	A	G	885.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.377;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=4.642;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.340;SB=-1.280e+02;SOR=1.445;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,30:60:99:914,0,862
2	182359613	rs165419	G	A	741.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.29;SB=-7.197e+01;SOR=3.816;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:770,57,0
2	182363613	rs1349196	T	A	482.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=0.00;SOR=5.283;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:511,39,0
2	182374534	rs1143674	A	G	1988.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=-2.800e+02;SOR=3.461;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2017,153,0
2	182376546	rs1466109	T	G	1769.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.09;SB=-1.115e+03;SOR=0.933;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1798,129,0
2	182387133	rs7602504	A	G	1588.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.36;SB=-1.603e+02;SOR=4.174;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1617,120,0
2	182394145	rs3770104	C	T	543.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=0.00;SOR=5.421;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:572,42,0
2	182395345	rs1143676	G	A	2753.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-1.556e+03;SOR=0.843;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2782,202,0
2	182399097	rs7562325	T	C	1628.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.08;SB=-9.740e+02;SOR=0.836;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1657,120,0
2	182399497	rs5836796	A	ATT	1564.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;RPA=11,13;RU=T;SB=-5.720e+02;SOR=1.609;STR;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:52:99:1565,131,0
2	182399638	rs2124443	A	G	1423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-6.530e+02;SOR=1.609;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1452,105,0
2	182402790	rs6747500	G	A	1150.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-3.300e+02;SOR=2.368;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1179,87,0
2	182403222	rs138386485	TGCCTCTAGAACA	T	3794.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.00;SB=-4.675e+02;SOR=3.611;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:27:78:3832,78,0
2	182403792	rs67616793	A	AT	3409.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-9.730e+02;SOR=1.931;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:3447,211,0
2	182403851	rs10180793	G	A	2924.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-1.613e+03;SOR=1.014;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2953,214,0
2	182412633	.	G	GACACACACACACAC	4078.73	PASS	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.37;RPA=4,11;RU=AC;SB=-1.070e+03;SOR=2.066;STR;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:29:81:4116,81,0
2	182413259	rs12997453	A	G	816.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SB=-1.921e+02;SOR=2.494;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:845,63,0
2	182413602	rs13003064	A	T	2297.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-5.040e+02;SOR=2.670;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2326,175,0
2	182521578	rs1473295	G	A	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.11;ReadPosRankSum=0.654;SB=-1.550e+02;SOR=0.638;VQSLOD=9.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,17:42:99:369,0,676
2	182543455	rs1801262	T	C	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.702;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.211;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-1.554;SB=-3.090e+02;SOR=1.358;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,25:45:99:694,0,540
2	182778704	rs62192080	T	G	429.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.221;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-0.357;SB=-1.700e+02;SOR=0.477;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,18:43:99:458,0,710
2	182794534	rs1051085	G	A	684.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=0.00;SOR=5.892;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:713,54,0
2	182928555	rs1196161	G	C	3057.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-1.597e+03;SOR=1.156;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3086,220,0
2	183066377	rs72168532	C	CAA,CA	1056.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.410;DB;DP=48;ExcessHet=3.0103;FS=2.329;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQ0=0;MQRankSum=0.352;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.97;RPA=13,15,14;RU=A;ReadPosRankSum=0.757;SB=-4.390e+02;SOR=0.697;STR;VQSLOD=0.373;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,20,23:48:99:1094,445,401,263,0,173
2	183066391	rs200353420	C	A	592.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.742;DB;DP=50;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.030;QD=12.35;ReadPosRankSum=1.377;SB=-2.280e+02;SOR=0.580;VQSLOD=1.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,22:48:99:621,0,725
2	183088584	rs3754929	G	A	2952.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-1.024e+03;SOR=1.916;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2981,220,0
2	183106758	rs2568667	T	G	1119.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-3.560e+02;SOR=1.949;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1148,87,0
2	183387612	rs2303890	T	C	369.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=0.00;SOR=4.977;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:12:33:398,33,0
2	183583130	rs2118591	A	G	489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=0.00;SOR=5.421;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:518,39,0
2	183584755	rs6729801	G	A	1352.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-2.710e+02;SOR=2.833;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1381,105,0
2	183593451	rs3832045	AT	A	1542.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.60;RPA=9,8;RU=T;SB=-5.630e+02;SOR=1.493;STR;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:61:99:1580,174,0
2	183593697	rs288280	C	T	2537.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-1.210e+03;SOR=1.206;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2566,190,0
2	183597318	rs825660	A	G	1804.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.94;SB=-7.770e+02;SOR=1.574;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1833,132,0
2	183600806	rs67910882	T	TAAG	631.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.19;RPA=1,2;RU=AAG;SB=0.00;SOR=4.977;STR;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:669,33,0
2	183616592	rs3098359	C	T	2024.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-5.050e+02;SOR=2.387;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2053,157,0
2	183616748	rs3115425	G	C	1937.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-7.210e+02;SOR=1.532;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1966,144,0
2	183616913	rs61748254	A	C	810.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.971;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.203;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=1.437;SB=-3.090e+02;SOR=0.506;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,31:52:99:839,0,610
2	183622319	rs141152570	AATAAT	A	961.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;RPA=2,1;RU=ATAAT;SB=-1.230e+02;SOR=3.126;STR;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:999,45,0
2	183622547	rs288334	T	G	1322.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-4.870e+02;SOR=1.954;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1351,99,0
2	183627504	rs192618	A	G	1304.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-6.920e+02;SOR=1.075;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1333,96,0
2	183627619	rs190830	C	G	622.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-4.276e+01;SOR=4.294;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:651,48,0
2	183793383	rs9333279	T	C	787.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.52;SB=0.00;SOR=6.091;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:816,60,0
2	183793398	rs9333280	A	G	1074.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-3.377e+01;SOR=4.680;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1103,90,0
2	183799558	rs9288088	G	C	806.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-4.380e+02;SOR=0.859;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:835,60,0
2	183827018	rs2271671	G	A	2044.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-9.400e+02;SOR=1.478;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2073,150,0
2	183851058	rs10185562	C	T	696.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=0.00;SOR=5.994;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:725,57,0
2	183859473	rs16823914	T	C	1005.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-3.700e+02;SOR=1.681;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1034,75,0
2	183988984	rs2705719	C	G	772.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.23;SB=-8.297e+01;SOR=3.912;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:801,60,0
2	183995115	rs370707374	CT	C	99.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;DB;DP=16;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.65;RPA=19,18;RU=T;ReadPosRankSum=0.798;SB=-4.797e+01;SOR=0.223;STR;VQSLOD=5.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,10:16:58:137,0,58
2	183995742	rs925803	A	C	817.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.403;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=0.103;SB=-4.380e+02;SOR=1.119;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,32:47:99:846,0,324
2	184022015	rs3791249	G	C	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-2.321e+02;SOR=2.303;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:867,63,0
2	184125573	rs898946	A	G	386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-1.065e+02;SOR=1.981;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:415,30,0
2	184125985	rs1979359	A	G	2043.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-8.810e+02;SOR=1.376;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2072,150,0
2	184472711	rs61733051	T	G	477.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.876;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.258;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.729;SB=-2.400e+02;SOR=0.941;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,17:36:99:506,0,447
2	184472910	.	G	A	137.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.250;SB=-2.801e+01;SOR=1.609;VQSLOD=5.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:14:99:166,0,212
2	185243509	rs73035493	G	A	748.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.888;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.720;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-1.137;SB=-3.080e+02;SOR=0.307;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,29:54:99:777,0,705
2	185463815	rs10689377	C	CCT	1232.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;DB;DP=76;ExcessHet=3.0103;FS=4.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.26;RPA=7,8;RU=CT;ReadPosRankSum=-0.558;SB=-5.670e+02;SOR=0.313;STR;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,32:76:99:1270,0,1184
2	185798504	rs4667000	A	C	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.759;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.242;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.381;SB=-9.100e+01;SOR=0.627;VQSLOD=7.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:19:99:204,0,319
2	185800905	rs12476147	A	T	934.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-4.490e+02;SOR=1.329;VQSLOD=3.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:963,72,0
2	185801747	rs4667001	G	A	852.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.777;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.069;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.429;SB=-3.290e+02;SOR=0.512;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,31:60:99:881,0,910
2	185801755	rs4667002	A	G	1785.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;SB=-5.900e+02;SOR=1.791;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1814,138,0
2	185801917	rs728534	A	G	567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.823;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=1.580;SB=-1.750e+02;SOR=0.569;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:596,0,649
2	185802243	rs1366842	C	A	876.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.176;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=0.969;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.007;SB=-5.400e+02;SOR=0.569;VQSLOD=3.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,32:60:99:905,0,838
2	185802363	rs12477430	A	G	1704.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-7.960e+02;SOR=0.952;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1733,132,0
2	185803364	rs3731834	C	G	1048.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.498;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=0.182;SB=-3.350e+02;SOR=1.193;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,34:67:99:1077,0,967
2	186156367	rs13408565	T	C	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.170;SB=-1.670e+02;SOR=0.368;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:65:203,0,65
2	186156401	rs13408663	T	C	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.543;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=1.780;SB=-1.390e+02;SOR=0.892;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:192,0,110
2	186603605	.	A	AG	304.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DP=33;ExcessHet=3.0103;FS=6.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;RPA=5,6;RU=G;ReadPosRankSum=1.453;SB=-8.100e+01;SOR=1.735;STR;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:33:99:342,0,446
2	186611566	rs6758484	C	A	416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-1.205e+02;SOR=2.147;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:445,33,0
2	186625645	rs71411142	TTTGA	T	947.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=0.808;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=1.321;SB=-6.576e+01;SOR=0.544;VQSLOD=3.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,17:26:99:985,0,534
2	186625880	rs10170781	C	G	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.544;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-0.929;SB=0.00;SOR=1.061;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:353,0,232
2	186629191	rs12998112	T	G	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.889;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.60;ReadPosRankSum=-0.148;SB=-6.000e+01;SOR=0.582;VQSLOD=9.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:129,0,340
2	186653546	rs3752671	G	A	1343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.871;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=-0.724;SB=-6.890e+02;SOR=0.877;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,47:79:99:1372,0,783
2	186655726	rs10931199	G	A	1676.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.54;SB=-9.390e+02;SOR=0.773;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1705,126,0
2	186656657	rs10173807	C	T	1203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=1.083;SB=-5.560e+02;SOR=0.604;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,40:72:99:1232,0,885
2	186667360	rs7565527	A	C	1287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.595;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=7.106;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=1.923;SB=-6.100e+02;SOR=1.193;VQSLOD=6.06;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:70,49:119:99:1316,0,1957
2	186668935	rs13003744	A	G	809.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.970;HaplotypeScore=4.3767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.758;SB=-4.700e+02;SOR=0.880;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,33:62:99:838,0,868
2	186670104	rs7576532	A	C	1855.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-1.052e+03;SOR=0.831;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1884,138,0
2	186670979	rs4666689	T	C	867.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.892;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=1.317;SB=-4.550e+02;SOR=0.684;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,28:54:99:896,0,630
2	186672897	rs4666690	A	G	489.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.886;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=1.540;SB=-3.020e+02;SOR=0.560;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,18:44:99:518,0,764
2	186678877	rs17230036	A	G	1193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.097;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=2.477;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=-0.870;SB=-2.460e+02;SOR=1.085;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,41:72:99:1222,0,819
2	186696369	rs2302914	C	G	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-0.124;SB=0.00;SOR=0.693;VQSLOD=10.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:246,0,246
2	186696759	rs2302913	C	T	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.60;ReadPosRankSum=-0.743;SB=0.00;SOR=0.223;VQSLOD=9.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:114,0,331
2	186697876	rs1468999	A	G	996.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.48;SB=-5.360e+02;SOR=1.308;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:72:1025,72,0
2	187364878	rs4144785	A	G	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.895;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.568;SB=-3.200e+01;SOR=1.002;VQSLOD=10.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:237,0,247
2	187365374	rs62200583	A	G	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.714;SB=-1.600e+02;SOR=0.446;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:353,0,243
2	187366097	.	A	G	790.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.829;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.992;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-0.581;SB=-5.080e+02;SOR=0.446;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,34:72:99:819,0,1009
2	187368733	rs10164423	G	A	670.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=3.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=0.862;SB=-2.380e+02;SOR=1.179;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:61,28:89:99:699,0,1567
2	187369013	.	T	TG	269.75	PASS	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;RPA=4,5;RU=G;SB=0.00;SOR=4.407;STR;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:12:24:307,24,0
2	187373146	rs7558856	G	A	349.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=0.00;SOR=4.804;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:378,30,0
2	187455278	rs9333287	C	T	680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SB=-3.260e+02;SOR=1.519;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:51:709,51,0
2	187487160	rs9333288	G	A	2043.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-6.840e+02;SOR=1.888;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2072,154,0
2	187490371	rs2197787	T	G	424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.47;SB=-4.276e+01;SOR=3.611;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:453,33,0
2	187497988	rs56088351	A	G	768.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.582;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.216;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.593;SB=-2.230e+02;SOR=0.416;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,30:63:99:797,0,1023
2	187498254	rs4667107	T	C	743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.750;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=0.808;SB=-4.176e+01;SOR=0.342;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,23:40:99:772,0,538
2	187501648	rs13430921	A	G	419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.652;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=-0.904;SB=0.00;SOR=0.941;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:448,0,343
2	187501682	rs56136540	G	A	450.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.164;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=1.420;SB=-6.500e+01;SOR=0.412;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,16:38:99:479,0,722
2	187502846	rs13422838	T	C	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=-1.393;SB=0.00;SOR=1.802;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:90:249,0,90
2	187503226	rs4667108	T	C	998.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.566;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=0.578;SB=-4.790e+02;SOR=0.602;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1027,0,781
2	187530116	rs2595392	C	G	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.360;SB=0.00;SOR=0.495;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:221,0,277
2	187532010	rs41265951	G	T	1332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.945;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=12.630;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.621;SB=-5.330e+02;SOR=1.483;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,51:92:99:1361,0,1023
2	187532373	rs2595391	T	G	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.514;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=0.217;SB=-2.660e+02;SOR=0.383;VQSLOD=7.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,26:69:99:694,0,1230
2	187532417	rs2230616	G	A	2765.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-1.255e+03;SOR=1.382;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2794,211,0
2	187558960	rs2276562	G	A	150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-2.443;SB=-5.900e+01;SOR=0.330;VQSLOD=8.85;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:179,0,325
2	187559047	.	G	GCAA	1008.73	PASS	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.86;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;RPA=5,6;RU=CAA;SB=-4.700e+02;SOR=0.892;STR;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:23:60:1046,60,0
2	187611748	rs2247924	G	A	1210.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-3.490e+02;SOR=2.179;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1239,93,0
2	187626338	rs13026081	C	T	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.175;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.693;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-0.121;SB=-1.860e+02;SOR=1.276;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:684,0,632
2	187713412	rs3114951	C	T	437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.50;SB=0.00;SOR=5.136;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:466,36,0
2	188216783	rs858744	C	T	404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.238;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=1.538;SB=-1.240e+02;SOR=0.693;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,16:41:99:433,0,726
2	188216807	rs858745	T	C	1713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-4.900e+02;SOR=2.160;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1742,129,0
2	188224057	rs1706287	A	G	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-7.497e+01;SOR=2.670;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:412,30,0
2	188227921	rs698582	A	G	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.643;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=1.157;SB=0.00;SOR=0.293;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:196,0,376
2	188243633	rs3771084	A	G	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.025;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.397;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-0.380;SB=-5.300e+01;SOR=2.461;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:31:99:386,0,452
2	188245640	rs1511877	G	A	1087.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-3.477e+01;SOR=5.353;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1116,84,0
2	188250301	rs698577	T	A	502.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-2.251e+02;SOR=1.371;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:19:39:526,39,0
2	188348670	rs3213739	T	G	661.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=0.00;SOR=5.784;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:690,51,0
2	188348696	rs144825443	TAAAC	T	560.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=1.187;POSITIVE_TRAIN_SITE;QD=19.12;ReadPosRankSum=0.561;SB=0.00;SOR=0.540;VQSLOD=3.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,10:22:99:598,0,742
2	189448896	rs2048138	A	T	934.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-1.563e+02;SOR=3.258;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:963,72,0
2	189849773	rs3106796	A	G	785.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.71;SB=-1.971e+02;SOR=2.093;VQSLOD=4.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:814,60,0
2	189855674	rs2203601	T	A	782.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-3.770e+02;SOR=1.302;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:811,60,0
2	189866199	rs2271682	T	A	1335.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-7.890e+02;SOR=0.874;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1364,99,0
2	189867205	rs3106801	G	A	439.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=0.00;SOR=5.136;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:468,36,0
2	189867844	rs3736489	T	A	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-0.812;SB=-9.400e+01;SOR=0.527;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:227,0,380
2	189867882	rs3736490	C	T	147.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=4.467;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=-0.309;SB=-5.200e+01;SOR=1.546;VQSLOD=6.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,7:16:99:176,0,317
2	189875421	rs1516446	T	G	2861.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.90;SB=-1.028e+03;SOR=1.788;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2890,208,0
2	189875695	rs3768660	T	G	634.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.064;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.978;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=0.824;SB=-1.870e+02;SOR=0.278;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,21:31:99:663,0,266
2	189899572	rs7420715	T	C	354.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=0.00;SOR=4.804;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:383,30,0
2	189901295	rs12693526	G	A	1432.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.453;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=3.502;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=1.033;SB=-4.230e+02;SOR=0.366;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,51:94:99:1461,0,1342
2	189904203	rs10208525	A	G	745.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.980;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.214;SB=-3.750e+02;SOR=0.570;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,30:60:99:774,0,822
2	189904233	rs10197596	T	G	696.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.085;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-0.787;SB=-3.060e+02;SOR=0.512;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:725,0,761
2	189904413	rs72902330	C	T	65.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=-0.105;SB=-9.732e-01;SOR=1.609;VQSLOD=8.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:94:94,0,184
2	189907272	rs10207530	T	C	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.405;SB=0.00;SOR=0.412;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:130,0,204
2	189907676	rs13392501	A	G	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-0.087;SB=-9.732e-01;SOR=2.636;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:162,0,206
2	189907937	rs6434312	A	G	2191.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-1.261e+03;SOR=0.693;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2220,166,0
2	189910375	.	T	C	1293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.948;DP=81;Dels=0.00;ExcessHet=3.0103;FS=2.244;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.97;ReadPosRankSum=-0.091;SB=-3.170e+02;SOR=1.092;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,46:81:99:1322,0,877
2	189910419	rs117588489	C	A	1110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.477;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=1.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=1.480;SB=-4.290e+02;SOR=0.875;VQSLOD=6.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:68,47:115:99:1139,0,1952
2	189918787	rs6738371	C	T	468.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.897;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.396;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.680;SB=-2.100e+02;SOR=0.595;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:35:99:497,0,640
2	189923104	rs7556733	A	G	2456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-9.300e+02;SOR=1.708;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2485,181,0
2	189923401	rs10178611	T	C	484.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=-0.999;SB=-2.500e+02;SOR=0.498;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,15:25:99:513,0,318
2	189923434	rs12989558	A	C	427.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.978;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=-0.218;SB=-1.090e+02;SOR=0.446;VQSLOD=9.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:456,0,353
2	189923630	rs5837121	AT	ATT,A	980.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.225;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.50;RPA=12,13,11;RU=T;ReadPosRankSum=1.791;SB=-3.330e+02;SOR=1.059;STR;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/2:3,13,37:59:99:1018,798,1099,284,0,379
2	189925548	rs6414122	T	A	829.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-1.951e+02;SOR=2.670;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:858,63,0
2	189927506	rs7424947	C	G	464.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.761;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=-1.200;SB=-4.276e+01;SOR=0.631;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,15:23:99:493,0,214
2	189932831	rs2229495	T	C	4538.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-2.334e+03;SOR=1.048;VQSLOD=6.25;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4567,352,0
2	189933837	rs116853584	T	G	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.042;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.623;SB=-4.276e+01;SOR=0.269;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:323,0,260
2	189936687	rs6434317	T	G	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.084;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-0.136;SB=-6.700e+01;SOR=0.483;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,14:38:99:430,0,702
2	189943121	rs67456396	GA	G	160.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;RPA=12,11;RU=A;ReadPosRankSum=-0.431;SB=0.00;SOR=2.670;STR;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,10:12:6:197,0,6
2	189953285	rs36112906	A	AAATG	433.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.02;RPA=5,6;RU=AATG;ReadPosRankSum=0.281;SB=0.00;SOR=1.179;STR;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:471,0,265
2	189957205	rs79251854	C	T	521.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.193;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.034;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=0.194;SB=-1.390e+02;SOR=0.292;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,19:30:99:550,0,338
2	189962072	rs117085226	A	T	481.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=7.009;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=1.125;SB=-1.070e+02;SOR=1.873;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:510,0,739
2	189974958	rs4128539	G	T	1187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.945;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.601;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=0.513;SB=-9.900e+01;SOR=1.329;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,38:68:99:1216,0,921
2	190176696	rs13004722	T	C	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-2.670;SB=-1.380e+02;SOR=0.588;VQSLOD=6.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:251,0,200
2	190313268	rs77312241	C	T	892.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.177;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-0.745;SB=-1.750e+02;SOR=0.836;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,28:44:99:921,0,458
2	190313396	rs6738193	A	G	1115.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-4.010e+02;SOR=1.885;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1144,90,0
2	190313441	rs79567107	C	T	582.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.763;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.134;SB=-2.660e+02;SOR=0.327;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,23:48:99:611,0,677
2	190313570	rs28760459	T	A	567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.584;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.128;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-1.010;SB=-2.930e+02;SOR=0.430;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,22:52:99:596,0,883
2	190313613	rs28509172	G	T	337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=7.869;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.68;ReadPosRankSum=-0.605;SB=-3.800e+01;SOR=2.281;VQSLOD=6.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,14:44:99:366,0,926
2	190313841	rs1992295	T	C	359.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.24;SB=-1.235e+02;SOR=1.609;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:388,30,0
2	190314052	rs10196323	C	T	608.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.303;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.182;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=0.571;SB=-3.590e+02;SOR=1.022;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,26:58:99:637,0,857
2	190314085	rs28627748	T	C	517.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.174;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=-0.218;SB=-3.880e+02;SOR=0.713;VQSLOD=8.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,25:60:99:546,0,1035
2	190314186	rs10196675	G	A	449.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.386;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.772;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=0.816;SB=-1.480e+02;SOR=1.344;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,20:43:99:478,0,619
2	190315720	rs10202780	G	C	527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.103;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-1.704;SB=-2.680e+02;SOR=0.473;VQSLOD=8.12;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,23:44:99:556,0,532
2	190315723	rs10178969	A	C	506.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.823;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-1.448;SB=-2.110e+02;SOR=0.693;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:535,0,569
2	190316327	rs7572416	G	A	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.700;SB=0.00;SOR=0.693;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:160,0,170
2	190316625	rs13389403	T	C	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=1.294;SB=-9.800e+01;SOR=0.892;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:403,0,524
2	190319954	rs112007236	A	C	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.423;SB=0.00;SOR=0.593;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:231,0,311
2	190319963	rs377155083	C	T	193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.178;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.516;SB=0.00;SOR=0.593;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:222,0,316
2	190319966	.	C	CA	210.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.400;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;RPA=10,11;RU=A;ReadPosRankSum=0.448;SB=0.00;SOR=3.383;STR;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,15:17:11:247,11,0
2	190319990	rs1224958	A	G	1980.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7605;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;SB=-4.276e+01;SOR=6.479;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:52:99:2009,150,0
2	190320083	rs6737615	C	A	1801.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.966;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=1.231;HaplotypeScore=3.2287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=0.570;SB=-1.134e+03;SOR=0.572;VQSLOD=6.80;culprit=DP	GT:AD:DP:GQ:PL	0/1:85,81:166:99:1830,0,2119
2	190321930	rs112846132	A	G	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.103;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=0.786;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=-0.051;SB=0.00;SOR=0.245;VQSLOD=3.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,9:27:99:251,0,629
2	190321978	.	G	GA	501.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.430;QD=10.91;RPA=10,11;RU=A;ReadPosRankSum=-1.473;SB=-1.530e+02;SOR=0.506;STR;VQSLOD=1.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,23:48:99:539,0,443
2	190322196	rs10497700	T	C	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-0.519;SB=0.00;SOR=0.859;VQSLOD=10.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:207,0,120
2	190323964	rs78478456	G	T	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=0.163;SB=0.00;SOR=0.340;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:186,0,345
2	190324047	rs111249433	A	G	587.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.045;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=0.976;SB=-2.250e+02;SOR=0.789;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,25:61:99:616,0,960
2	190324195	rs74699810	T	C	1012.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.678;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-0.691;SB=-5.450e+02;SOR=0.624;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,42:86:99:1041,0,1109
2	190324215	rs75875035	G	A	901.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.682;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.955;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.005;SB=-3.530e+02;SOR=0.533;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,36:77:99:930,0,1159
2	190324275	rs77151836	G	A	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.245;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-0.246;SB=-3.876e+01;SOR=0.160;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:469,0,584
2	190327126	rs2304702	C	G	963.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.72;SB=-4.276e+01;SOR=5.211;VQSLOD=3.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:992,75,0
2	190327179	rs77698215	A	G	800.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.399;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.498;SB=-1.320e+02;SOR=1.085;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,28:58:99:829,0,785
2	190327389	rs112863490	A	G	469.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.230;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.843;SB=-2.901e+01;SOR=1.201;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,16:39:99:498,0,691
2	190328382	rs113875420	C	T	602.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.32;MQ0=0;MQRankSum=0.800;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=1.082;SB=-1.750e+02;SOR=0.892;VQSLOD=3.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,22:34:99:631,0,284
2	190328561	rs77997560	C	T	781.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.205;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=5.351;HaplotypeScore=7.0411;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=1.594;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-0.757;SB=-2.530e+02;SOR=1.501;VQSLOD=0.303;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,28:63:99:810,0,868
2	190328699	.	A	AT	296.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.02;MQ0=0;MQRankSum=1.679;QD=14.84;RPA=1,2;RU=T;ReadPosRankSum=1.140;SB=-1.100e+02;SOR=0.473;STR;VQSLOD=2.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,9:21:99:334,0,430
2	190329873	rs13429203	A	G	580.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=3.930;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=0.096;SB=-3.780e+02;SOR=0.290;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,26:57:99:609,0,884
2	190331081	rs76407376	A	G	662.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.737;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-0.468;SB=-3.501e+01;SOR=0.551;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,24:52:99:691,0,932
2	190332108	rs7606348	T	A	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.661;SB=-4.076e+01;SOR=0.317;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:340,0,269
2	190332997	rs6434343	T	A	521.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.36;SB=0.00;SOR=5.421;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:550,42,0
2	190430177	rs2304704	A	G	3544.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-2.078e+03;SOR=0.997;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3573,256,0
2	190443304	rs1439815	C	T	925.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-1.951e+02;SOR=2.753;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:954,72,0
2	190444630	rs1439816	C	G	2012.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-9.020e+02;SOR=1.539;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2041,147,0
2	190445076	rs4287798	T	G	995.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-3.510e+02;SOR=1.839;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1024,75,0
2	190448548	rs368151678	CATAT	C	1538.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.01;MQ0=0;QD=34.97;SB=-1.266e+02;SOR=5.486;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:38:99:1576,99,0
2	190448552	.	T	TAC	484.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.080;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.30;MQ0=0;MQRankSum=1.975;POSITIVE_TRAIN_SITE;QD=15.15;RPA=2,3;RU=AC;ReadPosRankSum=-0.993;SB=-1.449e+01;SOR=1.536;STR;VQSLOD=3.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,21:33:49:522,0,49
2	190531426	rs1437880	G	A	2156.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-1.415e+03;SOR=0.776;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2185,157,0
2	190541842	rs67184798	AT	A	315.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DB;DP=47;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.53;RPA=18,17;RU=T;ReadPosRankSum=-0.407;SB=-1.514e+01;SOR=2.085;STR;VQSLOD=6.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,23:47:99:353,0,214
2	190557272	rs374861194	A	G	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.702;SB=-3.500e+01;SOR=0.527;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:141,0,178
2	190570001	rs11319823	TA	T	885.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.05;RPA=10,9;RU=A;SB=-1.611e+02;SOR=2.899;STR;VQSLOD=4.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:40:99:923,102,0
2	190571776	rs16831887	A	G	832.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.157;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.013;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=1.339;SB=-2.900e+02;SOR=1.051;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,33:82:99:861,0,1331
2	190593311	rs1225087	C	G	2330.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-9.800e+02;SOR=1.577;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2359,169,0
2	190595258	rs1225090	G	T	2455.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.272e+03;SOR=1.220;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2484,181,0
2	190598061	rs116203695	A	G	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.763;SB=0.00;SOR=0.836;VQSLOD=9.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:14:99:206,0,196
2	190602513	rs1225099	T	C	1948.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.84;SB=-1.266e+03;SOR=0.811;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1977,144,0
2	190603201	.	T	TA	437.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;DP=41;ExcessHet=3.0103;FS=21.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;QD=10.94;RPA=10,11;RU=A;ReadPosRankSum=-0.461;SB=-6.829e-02;SOR=4.804;STR;VQSLOD=1.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,21:41:99:475,0,376
2	190611084	rs13002216	T	C	468.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.891;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.453;SB=-1.380e+02;SOR=0.990;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:497,0,441
2	190611414	rs2254166	T	C	1169.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.14;SB=-2.750e+02;SOR=2.517;VQSLOD=4.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:87:1198,87,0
2	190611459	rs2254167	A	G	542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-7.697e+01;SOR=3.258;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:571,42,0
2	190617643	rs2243876	A	G	2273.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-9.450e+02;SOR=1.488;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2302,169,0
2	190617700	rs16831960	T	C	496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.839;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=1.303;SB=-1.040e+02;SOR=0.418;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:525,0,860
2	190620216	rs75321854	C	T	1652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.457;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-0.174;SB=-8.240e+02;SOR=0.779;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,61:108:99:1681,0,1362
2	190620360	rs16831964	G	C	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.541;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=6.145;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=-0.156;SB=-5.150e-01;SOR=2.636;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:564,0,700
2	190636411	rs6942	C	G	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=0.691;SB=0.00;SOR=0.836;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:249,0,198
2	190640475	rs3816196	A	G	617.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.395;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-0.461;SB=-2.390e+02;SOR=0.738;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,25:59:99:646,0,907
2	190643257	rs7591929	G	A	231.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.350;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.82;ReadPosRankSum=-0.227;SB=-1.120e+02;SOR=0.720;VQSLOD=8.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,10:34:99:260,0,544
2	190647108	rs10168387	T	C	578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-7.997e+01;SOR=3.383;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:607,45,0
2	190722343	rs735559	T	C	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.601;SB=-1.765e+00;SOR=1.911;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:178,0,136
2	190722344	rs934883	C	T	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-0.601;SB=-1.765e+00;SOR=1.911;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:132,0,140
2	190788764	.	A	C	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.520;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7915;MLEAC=1;MLEAF=0.500;MQ=50.44;MQ0=1;MQRankSum=-4.094;QD=3.18;ReadPosRankSum=0.971;SB=-5.000e+01;SOR=0.773;VQSLOD=0.247;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:28:99:114,0,351
2	190788824	.	G	T	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9349;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=1;MQRankSum=-3.620;QD=4.78;ReadPosRankSum=0.935;SB=-4.900e+01;SOR=0.446;VQSLOD=0.917;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,9:19:99:119,0,322
2	190788825	.	A	G	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.946;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1993;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=1;MQRankSum=-3.620;QD=5.20;ReadPosRankSum=0.980;SB=-9.000e+01;SOR=0.446;VQSLOD=0.979;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,9:19:99:127,0,282
2	190788844	rs372940917	T	TC	369.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.20;MQ0=0;MQRankSum=-2.100;QD=26.41;ReadPosRankSum=0.779;SB=-1.530e+02;SOR=0.399;VQSLOD=1.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,10:14:99:407,0,142
2	190788845	.	G	A	77.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2847;MLEAC=1;MLEAF=0.500;MQ=48.63;MQ0=1;MQRankSum=-3.195;QD=5.55;ReadPosRankSum=1.536;SB=-3.100e+01;SOR=0.446;VQSLOD=0.314;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:15:99:106,0,209
2	190788852	.	T	C	88.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2847;MLEAC=1;MLEAF=0.500;MQ=46.64;MQ0=1;MQRankSum=-3.224;QD=6.83;ReadPosRankSum=1.534;SB=-2.601e+01;SOR=0.412;VQSLOD=1.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,6:13:99:117,0,131
2	190788853	.	G	A	81.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2847;MLEAC=1;MLEAF=0.500;MQ=46.64;MQ0=1;MQRankSum=-3.224;QD=6.29;ReadPosRankSum=1.534;SB=-3.400e+01;SOR=0.412;VQSLOD=0.878;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,6:13:99:110,0,215
2	191159232	rs188339	A	G	1383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-6.790e+02;SOR=1.179;VQSLOD=7.31;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1412,102,0
2	191161622	rs1058180	T	C	1803.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-1.142e+03;SOR=0.831;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1832,135,0
2	191175639	rs36074132	GT	G	1431.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;RPA=4,3;RU=T;SB=-6.270e+02;SOR=1.055;STR;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1469,129,0
2	191184475	rs291466	A	G	2511.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-1.353e+03;SOR=0.744;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2540,193,0
2	191184524	rs3749022	C	T	1843.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-7.310e+02;SOR=1.773;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1872,138,0
2	191235901	rs1882891	A	C	3243.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-1.891e+03;SOR=0.863;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3272,247,0
2	191301368	rs9646748	A	G	2636.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-1.304e+03;SOR=1.068;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2665,196,0
2	191334424	rs10193212	G	A	628.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;SB=0.00;SOR=5.892;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:657,51,0
2	191334459	rs67859388	A	ATTTTTAT	2160.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;RPA=2,3;RU=TTTTTAT;SB=-5.131e+02;SOR=2.303;STR;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:30:78:2198,78,0
2	191354491	rs3811609	T	C	958.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.111;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-0.782;SB=-4.400e+02;SOR=0.933;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,36:84:99:987,0,1298
2	191354658	rs66462803	C	CCT	3130.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.65;SB=-8.220e+02;SOR=2.024;VQSLOD=3.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:56:99:3168,166,0
2	191364309	rs7594994	C	T	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-0.628;SB=-1.765e+00;SOR=1.371;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:162,0,214
2	191373775	rs6707244	C	T	3197.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-1.086e+03;SOR=1.969;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3225,241,0
2	191374043	rs13429315	C	T	1118.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.947;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=2.637;HaplotypeScore=1.9145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.975;SB=-1.610e+02;SOR=1.420;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,38:79:99:1147,0,1132
2	191375375	rs6712426	G	A	527.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=0.00;SOR=5.421;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:556,42,0
2	191379268	rs4586658	G	A	564.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.418;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-0.868;SB=-2.940e+02;SOR=1.172;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,24:51:99:593,0,661
2	191383924	rs13395233	C	G	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.638;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=-0.581;SB=-1.410e+02;SOR=0.551;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:378,0,168
2	191389853	rs74975456	T	C	1071.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.769;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=1.134;SB=-4.770e+02;SOR=0.403;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,37:71:99:1100,0,1004
2	191390126	rs10931458	G	A	1452.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-2.700e+02;SOR=2.833;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1481,114,0
2	191399378	rs13412879	C	G	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-0.398;SB=-6.700e+01;SOR=0.850;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:130,0,141
2	191399433	rs12693579	T	C	288.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-1.603e+02;SOR=1.085;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:317,24,0
2	191523862	.	C	CT	194.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;DP=30;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.49;RPA=16,17;RU=T;ReadPosRankSum=-1.565;SB=-8.400e+01;SOR=1.022;STR;VQSLOD=5.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,13:30:99:232,0,177
2	191550356	.	A	G	1378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.925;DP=111;Dels=0.00;ExcessHet=3.0103;FS=2.434;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-0.823;SB=-8.200e+02;SOR=0.820;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,57:111:99:1407,0,1317
2	191552148	rs6716415	C	T	1248.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5466;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-1.811e+02;SOR=3.258;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1277,102,0
2	191818065	rs6434430	T	C	707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=0.00;SOR=5.892;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:736,54,0
2	191839976	rs1914408	C	T	371.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.877;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.564;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-0.503;SB=-1.260e+02;SOR=0.412;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:400,0,505
2	191841759	rs2066804	G	A	868.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.755;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-0.027;SB=-2.940e+02;SOR=0.564;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,35:85:99:897,0,1384
2	191841879	rs7597768	A	G	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=0.204;SB=0.00;SOR=0.412;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:132,0,204
2	191843830	rs2280235	A	G	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.378;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=2.869;SB=-6.900e+01;SOR=0.892;VQSLOD=8.50;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,19:29:99:615,0,319
2	191848312	rs12477076	T	C	958.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-1.791e+02;SOR=2.910;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:987,72,0
2	191898886	rs2459609	T	C	360.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=0.00;SOR=4.977;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:389,33,0
2	191922841	rs3024866	G	A	729.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-3.870e+02;SOR=0.874;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:758,57,0
2	191996518	rs1551443	T	C	2370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-8.090e+02;SOR=1.905;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2399,178,0
2	192160839	rs4853574	A	T	536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.709;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=0.973;SB=-6.800e+01;SOR=1.201;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:565,0,468
2	192160875	rs4853575	C	T	637.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.042;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.545;SB=-2.000e+02;SOR=0.586;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,25:44:99:666,0,622
2	192161058	.	G	GT	1387.73	PASS	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;RPA=8,9;RU=T;SB=-3.810e+02;SOR=2.160;STR;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:51:99:1425,141,0
2	192161103	rs33984858	A	ATTCT	628.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;DB;DP=24;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=-1.188;SB=-7.576e+01;SOR=0.138;VQSLOD=6.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,10:24:99:666,0,740
2	192214833	rs67146186	A	T	896.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.908;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=8.753;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=-0.139;SB=-1.880e+02;SOR=2.062;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,30:54:99:925,0,575
2	192214966	rs59642822	T	C	806.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.528;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=6.205;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=1.377;SB=-2.330e+02;SOR=1.695;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,29:53:99:835,0,525
2	192225294	rs2138913	A	G	227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=1.080;SB=-3.200e+01;SOR=0.631;VQSLOD=9.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:27:99:256,0,570
2	192226908	rs2271769	G	C	395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.046;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-0.251;SB=-1.765e+00;SOR=1.312;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:424,0,474
2	192227230	rs12988758	T	C	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.912;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.722;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.558;SB=-2.501e+01;SOR=1.171;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:545,0,641
2	192247808	rs34460997	A	G	458.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.43;SB=0.00;SOR=5.136;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:487,36,0
2	192247836	rs4641883	C	T	508.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-7.297e+01;SOR=3.126;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:537,42,0
2	192250543	rs13000398	A	G	1440.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-2.850e+02;SOR=3.003;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1469,108,0
2	192250568	rs13026888	T	C	1662.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.48;SB=-2.890e+02;SOR=3.258;VQSLOD=4.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1691,126,0
2	192250726	rs13018796	G	A	3428.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-1.732e+03;SOR=1.022;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3457,256,0
2	192279327	rs2271767	T	C	2557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-1.581e+03;SOR=0.793;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2586,187,0
2	192701393	rs10167187	A	G	1842.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-8.190e+02;SOR=1.140;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1871,138,0
2	192711162	rs4471838	A	C	3536.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;SB=-1.352e+03;SOR=1.609;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3565,259,0
2	192746122	rs369781670	A	G	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.876;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.317;SB=-8.400e+01;SOR=1.555;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:274,0,289
2	192746182	rs12693617	G	A	453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=-1.971e+02;SOR=1.179;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:482,36,0
2	192746735	rs4416162	T	C	1353.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;SB=-7.790e+02;SOR=1.225;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1382,102,0
2	192820898	rs7606017	T	G	772.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-4.276e+01;SOR=4.892;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:801,66,0
2	193056737	rs3768702	C	A	1240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.693;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.904;HaplotypeScore=3.4691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=-2.333;SB=-4.100e+02;SOR=0.905;VQSLOD=7.82;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,48:84:99:1269,0,873
2	195052314	rs9808251	T	C	314.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.23;SB=-1.961e+02;SOR=1.022;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:343,24,0
2	195052367	rs9808060	C	A	306.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.60;SB=-2.001e+02;SOR=1.179;VQSLOD=4.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:24:335,24,0
2	196581295	rs148345473	T	TGTCTAG	1377.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-1.920e+02;SOR=3.126;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:1415,45,0
2	196582816	rs842736	T	C	597.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.20;SB=0.00;SOR=5.784;VQSLOD=8.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:626,48,0
2	196602582	rs71015726	A	AAAT	3134.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=28.59;RPA=1,2;RU=AAT;SB=-8.710e+02;SOR=2.221;STR;VQSLOD=4.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:57:99:3172,169,0
2	196619340	rs1866451	T	G	792.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.97;SB=-8.297e+01;SOR=3.912;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:821,60,0
2	196636662	rs1145939	C	G	1542.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-3.700e+02;SOR=2.786;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1571,114,0
2	196640385	.	A	C	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.58;ReadPosRankSum=0.805;SB=0.00;SOR=0.693;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:164,0,167
2	196663997	rs7567285	T	C	2047.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5505;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-6.590e+02;SOR=2.338;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2076,156,0
2	196673533	rs13411834	A	G	3764.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-2.331e+03;SOR=0.762;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3793,277,0
2	196682630	rs975417	C	A	739.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-4.076e+01;SOR=3.912;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:768,60,0
2	196756535	rs11292337	GA	G	746.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.501;DB;DP=40;ExcessHet=3.0103;FS=4.865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.96;RPA=11,10;RU=A;ReadPosRankSum=-0.440;SB=-1.143e+02;SOR=3.126;STR;VQSLOD=6.29;culprit=QD	GT:AD:DP:GQ:PL	1/1:2,32:40:42:784,42,0
2	196791276	rs1489802	T	G	787.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-2.830e+02;SOR=1.609;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:816,60,0
2	196822159	rs200373928	G	A	827.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.117;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.004;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.52;ReadPosRankSum=-1.250;SB=-3.880e+02;SOR=0.846;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,31:57:99:856,0,745
2	196851911	rs10931715	G	A	1104.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-6.410e+02;SOR=1.040;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:81:1133,81,0
2	196866420	rs6434811	C	T	2582.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-1.101e+03;SOR=1.501;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2611,187,0
2	196891449	rs1072600	T	C	1132.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.69;SB=-3.976e+01;SOR=4.548;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:87:1161,87,0
2	196912067	rs4850381	A	G	1631.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-7.900e+02;SOR=1.112;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1660,120,0
2	196915991	rs10174065	A	G	1427.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-7.790e+02;SOR=1.132;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1456,105,0
2	196935811	rs12693777	T	C	835.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.82;SB=-3.300e+02;SOR=1.519;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:864,63,0
2	197004439	rs1054537	A	G	1053.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-6.120e+02;SOR=0.811;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1082,78,0
2	197008529	rs1568368	C	T	582.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SB=0.00;SOR=5.670;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:611,48,0
2	197010823	rs2271888	C	T	883.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-3.300e+02;SOR=2.019;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:66:912,66,0
2	197021141	rs6712829	G	A	483.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.55;SB=-4.076e+01;SOR=3.912;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:512,39,0
2	197021276	rs10931726	T	C	1420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-8.980e+02;SOR=0.735;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1449,108,0
2	197021372	rs12478353	T	A	1392.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-6.070e+02;SOR=1.514;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1421,108,0
2	197065889	rs3795921	A	G	505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;SB=0.00;SOR=5.549;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:534,45,0
2	197065964	rs3820908	C	A	1006.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.97;SB=-5.290e+02;SOR=1.209;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:75:1035,75,0
2	197066175	rs4566380	T	G	613.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-1.543e+02;SOR=2.419;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:642,48,0
2	197084587	rs1531113	T	C	612.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.64;SB=-2.970e+02;SOR=1.426;VQSLOD=4.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:45:641,45,0
2	197084595	rs1531114	T	C	683.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.35;SB=-3.710e+02;SOR=1.358;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:51:712,51,0
2	197106759	rs2045277	T	C	822.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-5.140e+02;SOR=0.693;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:851,63,0
2	197118729	rs4850690	C	T	1291.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.08;SB=-6.200e+02;SOR=1.464;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:47:96:1320,96,0
2	197122493	rs6731238	T	G	509.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.743;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=6.048;HaplotypeScore=3.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=0.193;SB=-1.400e+02;SOR=1.635;VQSLOD=6.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,20:55:99:538,0,911
2	197122662	rs77751899	T	C	657.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.178;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.511;HaplotypeScore=2.4673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=1.472;SB=-1.940e+02;SOR=0.346;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,23:41:99:686,0,483
2	197135806	rs4850693	T	C	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.429;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=1.112;VQSLOD=10.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:134,0,208
2	197136058	rs77445765	T	C	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.559;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=-0.041;SB=-1.765e+00;SOR=2.303;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:390,0,228
2	197171104	rs6729640	G	A	639.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.45;SB=-3.677e+01;SOR=4.407;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:668,51,0
2	197171175	rs4241189	C	T	1488.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-5.140e+02;SOR=1.981;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1517,114,0
2	197171183	rs12468199	C	T	1647.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-5.450e+02;SOR=1.958;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1676,120,0
2	197172816	rs2305567	G	A	1166.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-3.760e+02;SOR=2.073;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1195,87,0
2	197184321	rs1531111	C	T	6193.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-3.709e+03;SOR=0.797;VQSLOD=4.42;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,200:200:99:6222,451,0
2	197298222	rs2204641	T	C	567.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.39;SB=-3.250e+02;SOR=1.127;VQSLOD=4.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:42:596,42,0
2	197298232	rs2204640	C	T	489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-1.961e+02;SOR=1.739;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:518,39,0
2	197504545	rs1879128	C	G	1068.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-4.820e+02;SOR=1.352;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1097,81,0
2	197504826	rs6434873	A	G	749.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-3.260e+02;SOR=1.519;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:778,57,0
2	197534692	rs7590083	C	T	1777.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-6.980e+02;SOR=1.773;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1806,132,0
2	197559791	rs74600676	C	T	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.048;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-1.184;SB=-1.610e+02;SOR=0.582;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:559,0,532
2	197584504	rs2680970	C	T	672.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-1.165e+02;SOR=3.056;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:701,54,0
2	197593787	rs2460436	C	T	609.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=0.00;SOR=5.670;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:638,48,0
2	197594203	rs2577580	G	C	2988.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-1.535e+03;SOR=1.167;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3017,220,0
2	197594422	rs138661976	C	G	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=-0.817;SB=-8.197e+01;SOR=0.197;VQSLOD=6.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,8:12:99:288,0,129
2	197595762	rs2680967	G	A	1162.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-3.600e+02;SOR=2.179;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1191,87,0
2	197664521	rs6434886	A	T	771.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=0.00;SOR=6.273;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:800,63,0
2	197777589	rs12693800	C	T	2692.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.97;SB=-6.390e+02;SOR=2.524;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2721,205,0
2	197792146	rs369450842	A	AAAC	281.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQ0=0;MQRankSum=0.253;QD=28.17;ReadPosRankSum=-0.842;SB=-5.676e+01;SOR=1.802;VQSLOD=1.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,9:10:0:316,0,0
2	197792152	.	A	C	346.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=62.28;MQ0=0;MQRankSum=-0.897;QD=24.73;ReadPosRankSum=-1.378;SB=-4.276e+01;SOR=1.609;VQSLOD=0.692;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,12:14:4:373,0,4
2	197854233	rs71768472	T	TAC	1111.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.565;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.51;RPA=7,8;RU=AC;ReadPosRankSum=-1.007;SB=-4.876e+01;SOR=3.193;STR;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,29:34:3:1147,3,0
2	197863214	rs1966703	C	T	2129.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-8.230e+02;SOR=1.917;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2158,160,0
2	197863851	rs4850742	C	T	1172.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=-3.750e+02;SOR=2.191;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1201,90,0
2	197864996	rs6434897	A	C	423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-1.185e+02;SOR=2.303;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:452,33,0
2	197866470	rs12478175	T	A	1443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-7.150e+02;SOR=1.154;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1472,108,0
2	197870808	rs2376211	A	G	629.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.65;SB=-4.276e+01;SOR=4.294;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:658,48,0
2	197872727	rs35995095	T	TTCTC	1851.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.82;RPA=2,4;RU=TC;SB=-6.976e+01;SOR=5.211;STR;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:33:81:1889,81,0
2	197873563	rs7565685	T	C	490.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=0.00;SOR=5.283;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:519,39,0
2	197953372	rs146161383	TAAGTC	T	4825.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;RPA=2,1;RU=AAGTC;SB=-8.880e+02;SOR=2.869;STR;VQSLOD=5.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,64:65:99:4863,193,0
2	197954780	rs4300850	A	G	2107.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-7.900e+02;SOR=1.716;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2136,154,0
2	197986048	rs2697270	T	C	634.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.41;SB=-1.115e+02;SOR=2.948;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:663,48,0
2	197989945	rs2579395	T	C	1029.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-2.221e+02;SOR=2.546;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:78:1058,78,0
2	197990509	rs2579394	G	A	1650.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.18;SB=-3.230e+02;SOR=3.033;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1679,129,0
2	197990909	rs2918628	G	A	1093.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-1.523e+02;SOR=3.545;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1122,84,0
2	198001443	rs2579387	C	T	669.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-2.351e+02;SOR=1.931;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:698,51,0
2	198011878	rs2272407	G	A	878.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=1.069;SB=-4.840e+02;SOR=0.361;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,33:59:99:907,0,663
2	198011904	rs2249470	G	A	1532.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-6.700e+02;SOR=1.519;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1561,114,0
2	198257008	rs72912888	C	G	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=1.434;SB=-1.765e+00;SOR=2.179;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:216,0,131
2	198257652	.	T	TA	467.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.113;DP=25;ExcessHet=3.0103;FS=6.214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.49;RPA=12,13;RU=A;ReadPosRankSum=-0.732;SB=-2.907e+01;SOR=3.912;STR;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,22:25:19:505,19,0
2	198257795	rs4685	T	C	2182.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-1.181e+03;SOR=0.990;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2211,160,0
2	198263146	rs16865262	T	C	604.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.400;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=-0.629;SB=-4.276e+01;SOR=0.272;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:36:99:633,0,532
2	198264903	rs140740106	AAAT	A	1316.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;DB;DP=74;ExcessHet=3.0103;FS=3.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.55;RPA=2,1;RU=AAT;ReadPosRankSum=2.007;SB=-6.470e+02;SOR=0.481;STR;VQSLOD=7.02;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:42,29:74:99:1354,0,2262
2	198265173	rs788017	T	A	719.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-2.211e+02;SOR=2.124;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:748,54,0
2	198265526	rs788018	A	G	1097.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-3.720e+02;SOR=2.115;VQSLOD=3.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1126,81,0
2	198266943	rs788019	C	T	590.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-1.155e+02;SOR=2.833;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:619,48,0
2	198267770	.	G	GAA	1885.73	PASS	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.55;RPA=4,6;RU=A;SB=-6.150e+02;SOR=1.559;STR;VQSLOD=2.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1923,135,0
2	198283305	rs788023	T	C	2247.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-1.256e+03;SOR=0.992;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:75:99:2276,163,0
2	198327314	rs3754822	G	A	861.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.187;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=3.058;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.309;SB=-3.990e+02;SOR=1.112;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,37:80:99:890,0,1071
2	198355135	rs35039119	T	TTG	709.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;RPA=2,3;RU=TG;SB=-2.891e+02;SOR=1.244;STR;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:17:48:747,48,0
2	198355153	rs11682567	T	G	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=-0.674;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=1.190;SB=-2.901e+01;SOR=2.179;VQSLOD=0.531;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:214,0,176
2	198359027	rs7585486	G	C	265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.82;ReadPosRankSum=0.700;SB=-1.550e+02;SOR=0.794;VQSLOD=8.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,11:34:99:294,0,703
2	198361650	rs146499808	CAACT	C	346.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=0.375;SB=0.00;SOR=0.473;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:15:99:384,0,541
2	198362018	rs8539	T	C	1320.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-5.240e+02;SOR=1.432;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1349,99,0
2	198365788	rs2305560	C	T	317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.336;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=0.626;SB=-1.310e+02;SOR=1.609;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,13:17:56:346,0,56
2	198508951	rs10497806	G	A	5553.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-2.663e+03;SOR=1.260;VQSLOD=4.59;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,187:187:99:5582,406,0
2	198509058	rs16866940	C	T	1634.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.580;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=3.895;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=1.044;SB=-6.170e+02;SOR=1.036;VQSLOD=6.22;culprit=DP	GT:AD:DP:GQ:PL	0/1:103,65:169:99:1663,0,2934
2	198511086	rs16866970	G	A	1049.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.274;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.196;SB=-3.380e+02;SOR=0.751;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,41:69:99:1078,0,790
2	198572076	rs371088030	A	ATTC	1063.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;DB;DP=49;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.71;RPA=1,2;RU=TTC;ReadPosRankSum=0.987;SB=-3.770e+02;SOR=1.124;STR;VQSLOD=6.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,20:49:99:1101,0,1611
2	198643631	rs700655	G	A	1862.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-5.990e+02;SOR=2.066;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1891,141,0
2	198866620	rs72928581	G	A	302.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-1.921e+02;SOR=0.859;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:24:331,24,0
2	198950240	rs1064213	G	A	3010.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-1.658e+03;SOR=0.901;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3039,229,0
2	200173684	rs10153730	T	G	3061.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-1.390e+03;SOR=1.519;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3090,220,0
2	200245245	rs1348813	C	G	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.002;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.076;SB=-1.360e+02;SOR=0.859;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:468,0,453
2	200246318	rs2305262	C	T	408.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=0.435;SB=-3.000e+01;SOR=2.170;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:437,0,220
2	200298313	rs7596597	A	G	578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-7.497e+01;SOR=3.383;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:607,45,0
2	200524744	rs72920213	G	A	907.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.182;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.087;SB=-4.980e+02;SOR=0.418;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,31:61:99:936,0,914
2	200625581	rs2346586	T	C	1438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.001;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.785;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.066;SB=-5.340e+02;SOR=0.968;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,53:107:99:1467,0,1332
2	200709099	rs55852473	T	C	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=-0.376;SB=-1.290e+02;SOR=0.923;VQSLOD=7.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,16:42:99:430,0,744
2	200710706	rs769960	T	G	390.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-8.197e+01;SOR=2.670;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:419,30,0
2	200820505	rs281766	T	G	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=1.693;SB=-4.176e+01;SOR=0.078;VQSLOD=7.47;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:130,0,198
2	200872942	rs6414157	C	T	550.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.384;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.065;SB=-9.200e+01;SOR=0.641;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:579,0,624
2	201253956	rs842823	A	G	470.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.109;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=-1.443;SB=-2.570e+02;SOR=0.437;VQSLOD=7.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,22:59:99:499,0,1041
2	201254049	rs3820881	G	C	2401.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-1.455e+03;SOR=0.772;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2430,184,0
2	201254171	rs4674015	A	G	1266.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-3.910e+02;SOR=1.923;VQSLOD=5.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1295,96,0
2	201254277	rs842824	A	G	368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=0.00;SOR=4.804;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:397,30,0
2	201277181	rs6706953	T	C	1065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.950;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=0.802;SB=-5.540e+02;SOR=0.460;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,39:74:99:1094,0,833
2	201277321	rs2083119	C	T	42.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.5977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.05;ReadPosRankSum=0.312;SB=0.00;SOR=0.105;VQSLOD=9.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:71:71,0,390
2	201371768	rs3739116	G	T	1336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.693;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.269;SB=-7.420e+02;SOR=0.786;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:65,52:117:99:1365,0,1679
2	201397569	rs842940	G	A	1027.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=0.00;SOR=6.736;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1056,84,0
2	201397647	rs842939	A	C	2645.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-7.950e+02;SOR=2.215;VQSLOD=6.75;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2674,196,0
2	201437328	rs35987478	C	A	1149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.576;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=0.957;SB=-5.220e+02;SOR=0.818;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,38:64:99:1178,0,678
2	201437334	rs12052989	T	C	1175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.006;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=1.544;SB=-5.020e+02;SOR=0.713;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,39:68:99:1204,0,745
2	201440299	rs3764778	A	G	53.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.521;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.14;ReadPosRankSum=0.338;SB=0.00;SOR=0.124;VQSLOD=10.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:82:82,0,360
2	201451006	rs4470327	C	T	123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-0.105;SB=-1.000e+02;SOR=0.527;VQSLOD=10.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:64:152,0,64
2	201464295	rs10179964	T	C	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.896;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=-0.258;SB=-1.990e+02;SOR=0.723;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,26:72:99:705,0,1368
2	201467231	rs2293524	A	G	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=-0.616;SB=0.00;SOR=1.085;VQSLOD=10.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:211,0,118
2	201468515	rs12997909	T	C	126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.753;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.823;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.04;ReadPosRankSum=0.346;SB=-5.150e-01;SOR=1.751;VQSLOD=7.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:155,0,417
2	201470233	rs200778985	ATTT	A	261.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQ0=0;MQRankSum=2.050;POSITIVE_TRAIN_SITE;QD=11.90;RPA=15,12;RU=T;ReadPosRankSum=0.066;SB=-7.700e+01;SOR=0.804;STR;VQSLOD=3.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,10:24:99:299,0,452
2	201473674	rs2470902	G	A	487.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.706;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.510;SB=-5.300e+01;SOR=1.762;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:516,0,542
2	201474237	rs4672858	A	G	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.475;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.395;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-0.609;SB=-1.380e+02;SOR=0.965;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:40:99:559,0,531
2	201485572	rs4672865	A	G	758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-1.662;SB=-1.770e+02;SOR=1.040;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:787,0,613
2	201485649	rs4672866	T	G	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.626;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=-0.049;SB=-1.430e+02;SOR=0.813;VQSLOD=10.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:359,0,225
2	201485747	rs6761252	G	T	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.150;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=2.020;SB=-6.800e+01;SOR=0.389;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,21:51:99:660,0,1005
2	201485830	rs6761375	G	A	1161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.614;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-1.080;SB=-7.060e+02;SOR=0.612;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,49:104:99:1190,0,1463
2	201488758	rs2348021	A	G	1554.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-8.460e+02;SOR=0.818;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1583,120,0
2	201515939	rs868810	T	C	1245.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-3.210e+02;SOR=2.726;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1274,99,0
2	201677454	rs2270281	C	T	616.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=0.00;SOR=5.670;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:645,48,0
2	201677791	rs2270280	T	C	1898.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-9.900e+02;SOR=0.884;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1927,141,0
2	201679931	rs12475785	G	T	3373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-1.565e+03;SOR=1.279;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3402,250,0
2	201683695	rs2881880	T	C	1472.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.73;SB=-5.280e+02;SOR=1.880;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1501,108,0
2	201686122	rs3815501	T	C	1858.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2561;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=-7.180e+02;SOR=1.773;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1887,135,0
2	201686666	rs6705053	C	T	862.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-7.997e+01;SOR=4.174;VQSLOD=3.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:891,69,0
2	201719258	rs5837758	CA	C	113.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.58;RPA=16,15;RU=A;ReadPosRankSum=-0.184;SB=-4.104e+01;SOR=0.892;STR;VQSLOD=9.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,10:15:93:151,0,93
2	201726516	.	T	G	529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.81;ReadPosRankSum=1.091;SB=-4.100e+02;SOR=0.703;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,26:54:99:558,0,862
2	201950166	.	C	CT	100.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.20;RPA=11,12;RU=T;ReadPosRankSum=-0.953;SB=-6.600e+01;SOR=0.426;STR;VQSLOD=7.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,7:25:99:138,0,306
2	202025131	rs2518142	G	A	3749.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.503e+03;SOR=1.589;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3778,283,0
2	202025621	rs1594	A	G	2866.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-1.089e+03;SOR=1.661;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2895,211,0
2	202050677	rs3900115	A	G	2633.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-1.517e+03;SOR=0.741;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2662,205,0
2	202070735	rs6712872	A	T	1804.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-6.710e+02;SOR=1.781;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1833,135,0
2	202082459	rs13006529	T	A	1582.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-8.310e+02;SOR=1.136;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1611,117,0
2	202122956	rs3769824	T	C	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.061;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-1.006;SB=-2.850e+02;SOR=0.458;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,20:55:99:529,0,925
2	202122995	rs3769823	A	G	1758.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-7.260e+02;SOR=1.287;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1787,129,0
2	202151163	rs3769818	A	G	3104.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-1.709e+03;SOR=1.064;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3133,223,0
2	202152162	rs13113	T	A	674.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-1.165e+02;SOR=2.419;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:703,54,0
2	202153225	rs700635	C	A	374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;SB=-7.897e+01;SOR=2.833;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:30:403,30,0
2	202153252	rs700636	A	C	584.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-1.483e+02;SOR=2.419;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:613,45,0
2	202195030	rs1406121	T	C	664.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-2.021e+02;SOR=2.093;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:693,51,0
2	202211443	rs1406122	C	T	1990.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-8.050e+02;SOR=1.681;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2019,147,0
2	202215492	rs13014235	C	G	790.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.36;SB=-5.720e+02;SOR=0.826;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:57:819,57,0
2	202245244	rs3795966	A	G	2468.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-1.068e+03;SOR=1.580;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2497,181,0
2	202245944	rs3832088	TAA	T	1986.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;RPA=17,15;RU=A;SB=-1.403e+02;SOR=4.804;STR;VQSLOD=5.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:71:99:2024,174,0
2	202246034	rs3731709	G	C	550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-4.276e+01;SOR=4.294;VQSLOD=5.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:19:48:579,48,0
2	202248788	rs7579617	T	C	2300.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SB=-6.950e+02;SOR=2.235;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2329,172,0
2	202248979	rs7579853	T	A	1803.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-4.230e+02;SOR=2.794;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1832,138,0
2	202257930	rs3815515	C	A	827.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-4.076e+01;SOR=4.804;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:856,63,0
2	202260049	rs2256584	G	A	2417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-1.154e+03;SOR=1.240;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2446,184,0
2	202264156	rs13022344	C	T	5067.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=-3.168e+03;SOR=0.717;VQSLOD=5.12;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,168:169:99:5096,373,0
2	202264316	rs6732993	C	T	1571.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-7.597e+01;SOR=5.283;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1600,123,0
2	202271991	rs11691859	T	C	473.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.00;SB=0.00;SOR=5.283;VQSLOD=4.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:502,39,0
2	202272032	rs11691865	T	A	872.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=-4.276e+01;SOR=5.058;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:901,69,0
2	202284236	rs138358635	C	CTTAAT	3066.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.79;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-1.301e+03;SOR=1.022;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:41:99:3104,120,0
2	202285100	rs4507084	A	G	2211.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.01;SB=-5.600e+02;SOR=2.636;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2240,163,0
2	202337730	rs1019299	A	G	978.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.79;SB=-4.660e+02;SOR=1.284;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1007,78,0
2	202342402	rs12990557	G	T	4935.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=3;POSITIVE_TRAIN_SITE;QD=31.64;SB=-1.681e+03;SOR=1.889;VQSLOD=5.13;culprit=DP	GT:AD:DP:GQ:PL	1/1:3,153:156:99:4964,367,0
2	202342737	rs10460403	A	G	568.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-1.583e+02;SOR=2.049;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:597,48,0
2	202344179	rs34469362	GT	G	420.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;RPA=10,9;RU=T;SB=-8.451e+01;SOR=2.712;STR;VQSLOD=3.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:18:51:458,51,0
2	202357949	rs2714482	A	C	1100.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.36;SB=-3.290e+02;SOR=1.981;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1129,84,0
2	202360408	.	G	GT	69.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=18;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.98;RPA=18,19;RU=T;ReadPosRankSum=-1.337;SB=-2.977e+01;SOR=0.105;STR;VQSLOD=6.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:18:99:107,0,99
2	202400832	.	C	T	1008.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.963;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.075;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.34;ReadPosRankSum=-0.385;SB=-5.600e+02;SOR=0.509;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,35:55:99:1037,0,566
2	202402250	rs3083390	AAC	A	553.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.61;RPA=2,1;RU=AC;SB=-2.581e+02;SOR=0.836;STR;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:14:39:591,39,0
2	202410300	rs10804117	A	T	462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6232;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=-2.401e+02;SOR=1.244;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:491,36,0
2	202410395	rs10931956	G	C	364.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.892;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=1.747;SB=0.00;SOR=3.590;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,12:13:33:393,33,0
2	202430428	.	AT	A	614.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.391;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;RPA=21,20;RU=T;ReadPosRankSum=2.095;SB=-1.750e+02;SOR=0.330;STR;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:3,32:37:35:412,35,0
2	202447009	rs13425990	C	T	489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=0.00;SOR=5.421;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:518,42,0
2	202468136	rs10205247	T	A	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=0.00;SOR=4.804;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:412,30,0
2	202469361	rs12474206	C	T	1248.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-8.060e+02;SOR=0.739;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:93:1277,93,0
2	202469472	rs7572583	A	G	718.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-1.393e+02;SOR=2.737;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:747,54,0
2	202484003	.	G	GC	420.74	PASS	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;RPA=1,2;RU=C;SB=0.00;SOR=4.804;STR;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:30:458,30,0
2	202491995	rs2540450	G	A	3346.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-8.520e+02;SOR=2.606;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3375,253,0
2	202505545	rs56321285	G	A	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.477;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.586;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-0.514;SB=-1.310e+02;SOR=0.368;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,15:36:99:388,0,678
2	202507982	rs6723016	T	C	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.026;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.375;SB=-1.700e+02;SOR=0.693;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:360,0,284
2	202509814	rs3754932	T	C	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.64;ReadPosRankSum=-1.061;SB=-1.765e+00;SOR=0.509;VQSLOD=8.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,10:37:99:274,0,924
2	202526366	rs62193397	G	A	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.185;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.230;SB=-6.600e+01;SOR=0.551;VQSLOD=9.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:363,0,465
2	202528830	.	A	AT	547.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.04;RPA=5,6;RU=T;ReadPosRankSum=-0.366;SB=-1.690e+02;SOR=0.673;STR;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,21:40:99:585,0,434
2	202531136	rs17384314	G	C	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.119;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-1.416;SB=-2.601e+01;SOR=2.252;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:237,0,281
2	202538300	.	G	GA	362.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;DP=38;ExcessHet=3.0103;FS=4.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.55;RPA=9,10;RU=A;ReadPosRankSum=-1.301;SB=-1.070e+02;SOR=0.202;STR;VQSLOD=6.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,18:38:99:400,0,416
2	202545436	.	A	AGT	710.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DP=50;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.45;RPA=6,7;RU=GT;ReadPosRankSum=-0.391;SB=-1.540e+02;SOR=0.911;STR;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,19:50:99:748,0,1061
2	202546113	rs1208073	T	C	1175.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=-8.097e+01;SOR=4.615;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1204,90,0
2	202549666	rs1812932	A	C	489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8151;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-3.677e+01;SOR=3.126;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:39:518,39,0
2	202557702	rs6725443	C	T	2594.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-1.436e+03;SOR=1.153;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2623,193,0
2	202566741	rs7603563	T	C	382.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=0.00;SOR=4.804;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:411,30,0
2	202569992	rs3219171	A	T	1819.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-8.760e+02;SOR=1.022;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1848,138,0
2	202570232	rs3219170	A	G	525.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=-2.381e+02;SOR=1.493;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:554,39,0
2	202574825	rs1210940	C	T	657.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=0.00;SOR=5.892;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:686,54,0
2	202575821	rs3219168	G	A	2956.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.344e+03;SOR=1.337;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2985,220,0
2	202575907	rs2882231	A	G	1795.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.55;SB=-5.100e+02;SOR=1.958;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1824,135,0
2	202580370	rs3219167	G	A	471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=0.00;SOR=5.283;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:500,39,0
2	202598113	rs2276615	C	T	1207.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-4.390e+02;SOR=1.923;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1236,93,0
2	202606639	rs3731703	G	A	938.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-1.881e+02;SOR=2.910;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:967,72,0
2	202608877	rs4673207	C	A	429.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.19;SB=-7.697e+01;SOR=2.670;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:458,36,0
2	202625615	rs3219156	C	T	3147.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-1.507e+03;SOR=1.329;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3176,232,0
2	202688293	rs4675229	A	G	491.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=0.00;SOR=5.283;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:520,39,0
2	202698422	rs66588345	ATCT	A	1247.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.512;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.01;MQ0=0;MQRankSum=0.444;POSITIVE_TRAIN_SITE;QD=28.86;RPA=6,5;RU=TCT;ReadPosRankSum=1.040;SB=-2.881e+02;SOR=1.371;STR;VQSLOD=3.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,29:32:84:1285,84,0
2	202712095	rs917958	A	C	1962.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.17;SB=-1.192e+03;SOR=1.240;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1991,144,0
2	202741064	rs2072504	G	A	1456.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.84;SB=-7.897e+01;SOR=5.084;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1485,114,0
2	202741256	rs4675235	A	T	3281.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-1.715e+03;SOR=0.888;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3310,253,0
2	202741269	rs4675236	G	A	3144.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=-1.702e+03;SOR=0.874;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3173,241,0
2	202901235	rs13034206	C	T	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.795;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=1.138;SB=0.00;SOR=0.465;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:297,0,425
2	202939654	rs10221698	T	C	981.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.313;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.508;SB=-5.850e+02;SOR=0.608;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,36:65:99:1010,0,797
2	202955454	rs1568535	G	C	2437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-1.382e+03;SOR=0.920;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2466,178,0
2	202962310	rs11288166	CT	C	108.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=1.187;QD=4.94;RPA=16,15;RU=T;ReadPosRankSum=0.363;SB=-2.007e+01;SOR=0.527;STR;VQSLOD=1.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,10:26:99:146,0,257
2	202962358	rs6435124	G	C	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=1.434;SB=0.00;SOR=0.551;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:167,0,208
2	202964380	rs2882486	G	A	663.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.722;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.434;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.923;SB=-3.330e+02;SOR=1.220;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:692,0,609
2	202964528	rs2350722	T	C	619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.203;HaplotypeScore=2.7881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=1.475;SB=-3.130e+02;SOR=0.791;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,22:58:99:648,0,858
2	202964986	rs6755174	C	A	543.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=-0.529;SB=-2.110e+02;SOR=0.853;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,19:53:99:572,0,1071
2	202965222	rs6726731	A	G	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.767;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.482;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-0.177;SB=-1.720e+02;SOR=0.339;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,20:44:99:589,0,690
2	202974099	rs12611699	G	A	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-0.508;SB=0.00;SOR=0.818;VQSLOD=9.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:275,0,204
2	202990187	rs4675261	A	G	1299.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.20;SB=-4.310e+02;SOR=1.863;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:96:1328,96,0
2	202990653	rs56293728	G	A	54.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.4457;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=-0.371;POSITIVE_TRAIN_SITE;QD=2.28;ReadPosRankSum=0.357;SB=-2.657e-01;SOR=0.476;VQSLOD=2.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,5:25:83:83,0,552
2	203003085	rs16838883	T	C	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.976;SB=-2.901e+01;SOR=0.892;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:12:99:174,0,159
2	203029951	rs7582695	T	A	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=6.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.500;SB=-1.205e+02;SOR=0.045;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:239,0,195
2	203051886	rs6722588	C	T	841.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-2.311e+02;SOR=2.303;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:870,66,0
2	203066419	rs10931992	C	T	170.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=-0.722;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-0.706;SB=-5.700e+01;SOR=1.022;VQSLOD=3.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:199,0,240
2	203424775	rs45502895	C	T	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-0.468;SB=0.00;SOR=0.693;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:165,0,209
2	203621756	rs59752321	C	T	650.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=-1.931e+02;SOR=1.981;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:679,51,0
2	203630019	rs57454651	T	G	358.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=0.00;SOR=4.804;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:387,30,0
2	203630562	rs114146579	C	T	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.550;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.996;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=0.127;SB=-9.801e+01;SOR=0.368;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:534,0,335
2	203651278	rs55689177	CA	C	485.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.29;RPA=10,9;RU=A;SB=-2.977e+01;SOR=4.615;STR;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:523,60,0
2	203651475	.	A	AT	635.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DP=42;ExcessHet=3.0103;FS=2.510;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=0.490;POSITIVE_TRAIN_SITE;QD=18.17;RPA=13,14;RU=T;ReadPosRankSum=0.000;SB=-1.023e+02;SOR=1.734;STR;VQSLOD=0.434;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,30:42:5:672,0,5
2	203661779	rs6704822	A	G	586.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-7.297e+01;SOR=3.383;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:615,45,0
2	203690387	rs1344959	G	A	460.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.80;SB=-1.593e+02;SOR=2.049;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:489,36,0
2	203693559	rs4675296	C	G	1549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;SB=-7.830e+02;SOR=1.358;VQSLOD=6.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1578,111,0
2	203705787	rs1971819	G	C	400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.72;SB=-2.840e+02;SOR=0.818;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:429,30,0
2	203748544	.	A	AT	249.74	PASS	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;RPA=10,11;RU=T;SB=0.00;SOR=4.804;STR;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:30:287,30,0
2	203820275	rs3731695	T	C	525.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.77;SB=0.00;SOR=5.421;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:554,42,0
2	203838175	rs146569169	A	G	702.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.511;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=0.205;SB=-1.720e+02;SOR=0.941;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,25:42:99:731,0,413
2	203880992	rs2351524	T	C	1222.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-2.471e+02;SOR=3.086;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:96:1251,96,0
2	203921270	rs4673241	A	G	1346.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-3.200e+02;SOR=2.726;VQSLOD=7.79;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1375,99,0
2	203992707	rs114569446	T	G	630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.617;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.124;HaplotypeScore=3.4046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=0.671;SB=-3.870e+02;SOR=0.458;VQSLOD=7.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,29:67:99:659,0,1010
2	203996870	rs6748898	A	G	1131.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-8.297e+01;SOR=4.548;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:87:1160,87,0
2	204002809	rs10180815	A	C	417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=0.00;SOR=5.283;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:446,33,0
2	204036545	.	C	CT	162.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;RPA=14,15;RU=T;ReadPosRankSum=0.447;SB=0.00;SOR=2.494;STR;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:12:15:200,0,15
2	204054821	rs143585557	T	C	328.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.861;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.905;HaplotypeScore=1.4942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=-0.215;SB=-9.732e-01;SOR=2.194;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,11:30:99:357,0,579
2	204054834	rs62182253	G	A	1121.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-1.801e+02;SOR=3.193;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:90:1150,90,0
2	204054882	rs148174619	TACACACACACACACACACAC	T	6593.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;RPA=25,15;RU=AC;SB=-1.961e+03;SOR=1.911;STR;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:39:96:6631,96,0
2	204062061	rs4675323	A	G	3461.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-2.161e+03;SOR=0.710;VQSLOD=5.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3490,256,0
2	204073414	rs140112414	A	G	979.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.539;SB=-6.330e+02;SOR=0.591;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,38:65:99:1008,0,614
2	204090887	rs2351773	C	G	1627.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-9.270e+02;SOR=1.022;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1656,117,0
2	204110748	rs56317341	G	A	570.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.97;SB=0.00;SOR=5.670;VQSLOD=5.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:45:599,45,0
2	204111394	rs13015873	T	C	1422.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.68;SB=-1.653e+02;SOR=4.021;VQSLOD=4.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1451,108,0
2	204111398	rs10586509	GTTAA	G	2933.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.11;SB=-2.903e+02;SOR=4.125;VQSLOD=6.58;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,42:42:99:2971,126,0
2	204111443	rs6435176	A	G	2562.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-7.630e+02;SOR=2.303;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2591,187,0
2	204111705	rs6751894	T	C	644.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-3.577e+01;SOR=4.514;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:673,54,0
2	204116660	rs3731694	A	T	1785.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-3.530e+02;SOR=3.139;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1814,138,0
2	204116690	rs2043449	C	T	2044.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=-8.220e+02;SOR=1.751;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2073,154,0
2	204116887	rs2351771	T	G	992.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.653;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.23;ReadPosRankSum=0.301;SB=-2.071e+02;SOR=2.753;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,27:29:75:1021,75,0
2	204154552	rs1048013	C	T	1665.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-8.330e+02;SOR=1.077;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1694,126,0
2	204154686	rs10170454	A	G	530.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.28;SB=0.00;SOR=5.421;VQSLOD=8.35;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,14:14:42:559,42,0
2	204157238	rs6727994	A	G	499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;SB=-4.276e+01;SOR=3.767;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:528,39,0
2	204206977	rs4675333	C	T	1860.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.36;SB=-1.236e+03;SOR=0.949;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1889,135,0
2	204216255	.	G	GT	194.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.82;RPA=15,16;RU=T;ReadPosRankSum=2.663;SB=-4.954e+01;SOR=1.270;STR;VQSLOD=7.13;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,13:21:40:232,0,40
2	204261723	rs3731652	G	C	2238.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.64;SB=-1.350e+03;SOR=0.995;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2267,163,0
2	204305093	rs3814365	T	C	1270.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.9990;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.04;SB=-4.940e+02;SOR=1.259;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:49:96:1299,96,0
2	204309464	rs74396768	T	C	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.590;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.147;SB=0.00;SOR=0.425;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:233,0,349
2	204322298	rs2469953	T	C	2494.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-1.687e+03;SOR=0.716;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2523,181,0
2	204355822	rs2469962	G	A	845.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SB=-7.597e+01;SOR=4.174;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:874,66,0
2	204360201	rs2305417	A	G	921.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.49;SB=0.00;SOR=6.439;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:950,72,0
2	204629421	.	C	T	190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.219;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-1.680;SB=-1.340e+02;SOR=0.105;VQSLOD=6.06;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:219,0,172
2	204732850	rs231776	A	G	2068.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-1.230e+03;SOR=0.971;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2097,150,0
2	204821494	rs4264550	C	T	2019.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-6.170e+02;SOR=2.129;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2048,150,0
2	204824178	rs146016344	AGT	A	691.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.91;RPA=11,10;RU=GT;SB=-8.597e+01;SOR=3.500;STR;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:729,54,0
2	204824200	rs78281070	T	C	671.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-1.115e+02;SOR=3.160;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:700,51,0
2	204824283	rs10172036	T	G	2187.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-7.240e+02;SOR=2.035;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2216,160,0
2	204824324	rs10183087	A	C	3614.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-1.639e+03;SOR=1.449;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3643,262,0
2	205829991	rs236843	C	T	2912.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-1.424e+03;SOR=1.240;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2941,211,0
2	205912210	rs7563474	C	A	129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.199;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.83;ReadPosRankSum=0.463;SB=-1.905e+01;SOR=1.565;VQSLOD=7.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:99:158,0,343
2	205912403	rs1510765	T	C	521.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.901;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.907;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.767;SB=-3.180e+02;SOR=0.481;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,23:51:99:550,0,767
2	205969023	rs2289024	A	C	1755.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.925;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.43;ReadPosRankSum=1.495;SB=-4.070e+02;SOR=2.649;VQSLOD=4.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1784,135,0
2	205978113	rs200294145	CAG	C	558.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;DB;DP=32;ExcessHet=3.0103;FS=5.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=0.292;SB=-1.225e+02;SOR=0.113;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,20:32:27:596,0,27
2	205986289	rs148046878	C	G	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.477;SB=-1.440e+02;SOR=0.435;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:452,0,450
2	205990353	rs2276676	C	T	788.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.636;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.696;SB=-3.860e+02;SOR=0.756;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,30:66:99:817,0,808
2	206036918	rs736320	C	T	1748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-5.090e+02;SOR=2.345;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1777,129,0
2	206364487	rs11687914	T	C	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.268;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.953;SB=0.00;SOR=0.420;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,12:29:99:409,0,537
2	206364737	rs10197347	T	C	778.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.043;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.541;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-0.665;SB=-2.430e+02;SOR=1.245;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,30:70:99:807,0,1107
2	206364791	rs11683289	C	G	617.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.276;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=1.177;SB=-2.810e+02;SOR=0.515;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,23:41:99:646,0,519
2	206418032	rs6730102	G	A	1646.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.39;SB=-9.900e+02;SOR=0.914;VQSLOD=3.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1675,123,0
2	206481612	rs35710107	TGA	T	374.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;RPA=10,9;RU=GA;SB=-4.576e+01;SOR=3.258;STR;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:30:412,30,0
2	206562036	rs66514750	CTG	C	271.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DB;DP=17;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;RPA=16,15;RU=TG;ReadPosRankSum=1.360;SB=-2.601e+01;SOR=2.636;STR;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:17:99:309,0,249
2	206562250	rs849558	C	T	1445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-7.150e+02;SOR=1.251;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1474,108,0
2	206580714	rs849542	T	G	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=-1.156;SB=-2.901e+01;SOR=1.179;VQSLOD=9.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:211,0,124
2	206581033	rs849541	G	A	1491.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-5.170e+02;SOR=1.880;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1520,111,0
2	206592525	rs849527	A	G	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.000;SB=0.00;SOR=1.085;VQSLOD=10.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:192,0,129
2	206592695	rs849526	T	C	1120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.827;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-0.119;SB=-6.810e+02;SOR=0.557;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1149,0,979
2	206608039	rs849568	T	C	2502.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.76;SB=-1.102e+03;SOR=1.308;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2531,184,0
2	206614150	rs12999827	A	G	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=-1.026;SB=0.00;SOR=1.085;VQSLOD=10.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:217,0,124
2	206614160	rs849560	A	G	189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-0.414;SB=0.00;SOR=0.836;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:218,0,195
2	206614646	rs10932123	T	G	799.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.00;SB=-3.600e+02;SOR=1.085;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:828,63,0
2	206630073	rs58931543	A	AAC	670.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;DB;DP=47;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;RPA=9,10;RU=AC;ReadPosRankSum=0.253;SB=-1.580e+02;SOR=0.395;STR;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,19:47:99:708,0,860
2	206874339	rs817991	G	A	315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.696;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.165;SB=-2.901e+01;SOR=1.609;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,10:23:99:344,0,296
2	206911191	.	C	CA	424.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.36;RPA=10,11;RU=A;ReadPosRankSum=1.840;SB=-7.600e+01;SOR=0.446;STR;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,21:41:99:462,0,378
2	206911228	rs2909111	G	A	989.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.110;HaplotypeScore=2.4533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=0.769;SB=-2.520e+02;SOR=0.963;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,35:64:99:1018,0,773
2	206921451	rs818009	G	A	804.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.625;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=4.568;HaplotypeScore=3.3873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=1.643;SB=-3.150e+02;SOR=1.302;VQSLOD=7.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,33:80:99:833,0,1296
2	206995010	rs4147725	A	G	1197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.442;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=4.291;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=-0.782;SB=-3.140e+02;SOR=0.292;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,41:69:99:1226,0,821
2	207003438	rs4147729	TA	T	277.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;RPA=4,3;RU=A;ReadPosRankSum=-0.031;SB=0.00;SOR=0.616;STR;VQSLOD=9.69;culprit=SOR	GT:AD:DP:GQ:PL	0/1:12,11:24:99:315,0,356
2	207006676	rs1801318	T	C	520.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.881;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=10.235;HaplotypeScore=1.8808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-0.353;SB=-4.100e+01;SOR=2.441;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,18:49:99:549,0,776
2	207006825	rs4147718	C	A	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.713;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=-0.977;SB=-1.765e+00;SOR=2.093;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:474,0,375
2	207008675	rs67794803	C	CT	334.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;DB;DP=18;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=61.19;MQ0=0;MQRankSum=1.187;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=-0.517;SB=-2.302e+01;SOR=2.030;VQSLOD=0.257;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:372,0,339
2	207008763	rs1127566	C	A	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.48;MQ0=0;MQRankSum=1.561;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=0.706;SB=-3.100e+02;SOR=0.807;VQSLOD=1.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,21:45:99:529,0,636
2	207023595	rs4147709	C	A	426.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=-0.888;SB=-6.800e+01;SOR=1.230;VQSLOD=9.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,15:25:99:455,0,258
2	207023620	rs4147708	A	G	563.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=-0.180;SB=-1.140e+02;SOR=1.697;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,22:34:99:592,0,300
2	207024811	rs373546714	C	T	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=-1.004;QD=12.58;ReadPosRankSum=-1.024;SB=-9.500e+01;SOR=0.976;VQSLOD=2.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,12:22:99:305,0,269
2	207024886	.	G	GC	436.73	PASS	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;RPA=3,4;RU=C;SB=-1.205e+02;SOR=1.981;STR;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:15:36:474,36,0
2	207025444	rs11689362	T	C	980.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.599;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.957;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-0.099;SB=-5.850e+02;SOR=0.497;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,36:65:99:1009,0,825
2	207026490	.	C	CT	84.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.06;ReadPosRankSum=0.852;SB=0.00;SOR=0.693;VQSLOD=7.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,6:12:99:122,0,259
2	207026492	rs148791027	C	A	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.31;ReadPosRankSum=1.363;SB=0.00;SOR=0.446;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:164,0,243
2	207027407	rs145497999	C	CT	994.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.927;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.04;ReadPosRankSum=1.242;SB=-4.120e+02;SOR=0.817;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,25:62:99:1032,0,1544
2	207041053	rs3732083	T	C	1432.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.142;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=2.476;HaplotypeScore=3.3434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=0.878;SB=-4.730e+02;SOR=1.117;VQSLOD=7.70;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,51:130:99:1461,0,2256
2	207041441	rs3732082	G	A	1180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.462;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.888;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.832;SB=-5.760e+02;SOR=0.862;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1209,0,960
2	207169731	rs10932150	G	A	1143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.025;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=-0.358;SB=-5.370e+02;SOR=0.595;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,38:72:99:1172,0,962
2	207172627	rs7582864	A	G	2823.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-1.389e+03;SOR=1.230;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2852,205,0
2	207174316	rs3732084	T	C	1984.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-8.660e+02;SOR=1.179;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2013,147,0
2	207345826	rs3213811	G	A	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.484;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-1.953;SB=0.00;SOR=0.368;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:319,0,566
2	207395345	rs5838028	GA	G	104.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-0.464;POSITIVE_TRAIN_SITE;QD=7.48;RPA=17,16;RU=A;ReadPosRankSum=-0.128;SB=0.00;SOR=1.329;STR;VQSLOD=3.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,9:15:43:142,0,43
2	207414601	rs10164490	G	A	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-2.042;SB=0.00;SOR=0.551;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:156,0,212
2	207470884	rs4085933	T	C	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=1.509;SB=-9.732e-01;SOR=1.721;VQSLOD=7.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:135,0,211
2	207472573	rs1991537	A	G	517.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.232;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.173;SB=0.00;SOR=0.588;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:546,0,618
2	207472606	.	G	GT	766.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DP=61;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.78;RPA=10,11;RU=T;ReadPosRankSum=-1.537;SB=-2.200e+02;SOR=0.923;STR;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,34:61:99:804,0,518
2	207472683	rs10626869	C	CTA	1961.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.92;ReadPosRankSum=1.763;SB=-9.530e+02;SOR=0.610;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1999,0,2001
2	207474885	.	C	T	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.48;ReadPosRankSum=0.431;SB=-4.076e+01;SOR=1.329;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,10:12:34:322,0,34
2	207508741	rs4673360	C	T	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=-0.275;SB=0.00;SOR=0.836;VQSLOD=10.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:249,0,201
2	207527840	rs2115591	G	T	4479.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-2.529e+03;SOR=0.816;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4508,334,0
2	207569715	rs16838626	T	C	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.418;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=0.358;SB=-2.330e+02;SOR=0.594;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,25:63:99:634,0,1022
2	207569803	rs16838630	A	C	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-0.281;SB=0.00;SOR=0.818;VQSLOD=10.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:251,0,243
2	207570705	rs16838632	A	G	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.591;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-0.954;SB=-1.766e+00;SOR=1.781;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:309,0,269
2	207572341	rs16838641	T	G	519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.960;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.852;SB=-3.500e+01;SOR=0.504;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,17:38:99:548,0,677
2	207583169	rs16838693	T	C	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.813;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.436;SB=0.00;SOR=0.770;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:394,0,395
2	207583215	rs1001110	C	T	354.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=0.00;SOR=4.977;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:383,30,0
2	207603221	rs2287632	T	C	97.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=-0.741;SB=-1.765e+00;SOR=0.804;VQSLOD=9.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:126,0,307
2	207603234	rs2287631	T	G	591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-1.225e+02;SOR=2.712;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:620,45,0
2	207603474	rs4675634	C	T	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=0.818;SB=0.00;SOR=0.473;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:185,0,272
2	207604130	rs6722033	T	C	574.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-1.185e+02;SOR=2.712;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:603,45,0
2	207604427	rs6707178	G	A	220.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=1.398;SB=-6.800e+01;SOR=1.270;VQSLOD=10.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:249,0,139
2	207605610	rs10173497	A	C	530.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=0.00;SOR=5.421;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:559,42,0
2	207605733	rs10197325	C	T	1898.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=-1.114e+03;SOR=1.066;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1927,138,0
2	207605882	rs10173707	A	G	1560.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-7.380e+02;SOR=1.225;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1589,114,0
2	207605976	rs10209871	T	C	777.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-3.290e+02;SOR=1.697;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:806,57,0
2	207610047	rs4675635	C	T	781.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-4.000e+02;SOR=0.963;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:60:810,60,0
2	207610454	rs140066038	CTTTT	C	565.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;RPA=20,16;RU=T;SB=-8.797e+01;SOR=2.985;STR;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:19:42:603,42,0
2	207611230	rs2302922	T	G	1112.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-2.870e+02;SOR=2.649;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1141,84,0
2	207611257	rs2302921	G	T	491.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=1.655;SB=0.00;SOR=1.101;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:520,0,307
2	207613612	rs55772206	G	T	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-0.087;SB=0.00;SOR=0.859;VQSLOD=10.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:207,0,172
2	207613690	rs56943283	G	C	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.310;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=1.287;SB=-3.200e+01;SOR=1.071;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:405,0,375
2	207613980	rs13427620	G	A	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=1.852;SB=-1.765e+00;SOR=1.179;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:263,0,380
2	207615492	rs2359723	T	C	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=0.066;SB=0.00;SOR=0.874;VQSLOD=9.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:378,0,330
2	207615522	rs2359724	G	C	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.297;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=-0.568;SB=0.00;SOR=1.101;VQSLOD=10.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:28:99:559,0,366
2	207615857	rs61258471	G	A	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.018;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=-0.580;SB=-7.797e+01;SOR=0.185;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,24:40:99:718,0,537
2	207619558	rs59795626	G	A	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.165;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=-0.454;SB=0.00;SOR=0.368;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:213,0,392
2	207619779	rs59358632	A	G	1604.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.231;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=1.420;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-0.985;SB=-6.710e+02;SOR=0.884;VQSLOD=6.91;culprit=DP	GT:AD:DP:GQ:PL	0/1:78,65:143:99:1633,0,2157
2	207620330	rs16838820	T	C	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.438;SB=-3.876e+01;SOR=0.175;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:190,0,223
2	207621759	rs1990849	A	G	2354.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;SB=-6.480e+02;SOR=2.338;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2383,175,0
2	207625567	rs1862087	T	C	1236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.187;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-0.171;SB=-2.950e+02;SOR=0.793;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,42:85:99:1265,0,1179
2	207629846	rs28365797	A	T	752.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.134;HaplotypeScore=3.4497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-0.717;SB=-1.890e+02;SOR=1.003;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,28:61:99:781,0,917
2	207629904	rs3828294	G	A	2675.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-1.221e+03;SOR=1.347;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2704,199,0
2	207630093	rs16838839	C	A	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.733;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.181;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=1.301;SB=-1.080e+02;SOR=0.223;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,19:36:99:504,0,543
2	207631461	rs3762568	G	A	663.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.172;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-1.072;SB=-3.470e+02;SOR=0.627;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,26:58:99:692,0,775
2	207638894	rs73985719	A	C	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-0.342;SB=-1.766e+00;SOR=1.230;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:205,0,273
2	207639083	rs200425724	C	T	414.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.337;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.629;SB=-1.330e+02;SOR=0.830;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:443,0,585
2	207647981	rs2241347	C	T	250.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=-0.929;SB=-3.177e+01;SOR=0.368;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:279,0,161
2	207651782	rs879472	G	A	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.258;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=-0.228;SB=-6.700e+01;SOR=0.330;VQSLOD=8.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:157,0,254
2	207653770	rs57475447	A	G	383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.030;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.754;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=2.548;SB=-1.653e+02;SOR=0.126;VQSLOD=6.08;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,14:19:99:412,0,152
2	207814273	rs75295922	C	A	277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.408;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-0.258;SB=-9.732e-01;SOR=2.712;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:306,0,239
2	207820276	rs13420911	G	A	2323.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-1.398e+03;SOR=0.719;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2352,175,0
2	207824384	rs11903403	T	G	2605.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-1.211e+03;SOR=1.477;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2634,193,0
2	207824548	rs1453168	G	A	1958.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.20;SB=-6.710e+02;SOR=1.903;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1987,144,0
2	207824650	rs1453169	A	G	506.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.17;SB=0.00;SOR=5.283;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:535,39,0
2	207825656	rs13397039	A	T	2183.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-9.770e+02;SOR=1.641;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2212,160,0
2	207833848	rs7582092	A	G	1952.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-7.260e+02;SOR=1.812;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1981,153,0
2	207833983	rs7582305	A	G	1635.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.506;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-0.293;SB=-9.320e+02;SOR=0.886;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,62:114:99:1664,0,1537
2	207974818	rs2244923	C	T	1782.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-6.740e+02;SOR=1.863;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1811,132,0
2	207974875	rs2244918	A	G	486.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-0.661;SB=-5.300e+01;SOR=0.409;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:515,0,473
2	207988613	rs2700166	C	T	1713.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-7.930e+02;SOR=0.874;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1742,132,0
2	207989230	rs763865	G	T	898.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-3.150e+02;SOR=1.863;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:927,69,0
2	207998800	rs2284934	C	T	945.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-5.540e+02;SOR=0.892;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:974,72,0
2	207999021	rs2284933	G	C	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.536;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.320;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-0.661;SB=-2.430e+02;SOR=1.038;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:35:99:472,0,504
2	208031796	rs2037893	C	G	508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.432;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.928;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.289;SB=-5.800e+01;SOR=1.814;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:537,0,550
2	208031992	rs1269424	T	A	3284.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-2.058e+03;SOR=0.711;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3313,247,0
2	208447642	rs12478868	A	T	147.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.352;SB=-6.800e+01;SOR=0.368;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:176,0,138
2	208477852	rs2551949	G	A	1771.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.68;SB=-8.260e+02;SOR=1.609;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1800,129,0
2	208477956	rs2709416	C	T	2694.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-1.660e+03;SOR=0.809;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2723,199,0
2	208478055	rs17520056	A	G	1245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=3.508;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-1.226;SB=-7.780e+02;SOR=0.418;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,49:113:99:1274,0,2016
2	208485737	rs2709415	T	C	919.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SB=-3.120e+02;SOR=2.235;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:72:948,72,0
2	208601840	rs7564254	C	T	413.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.04;SB=0.00;SOR=4.977;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:442,33,0
2	208633413	rs4675711	T	C	1492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-4.280e+02;SOR=2.147;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1521,111,0
2	208693261	rs720632	C	G	548.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-0.434;SB=-2.460e+02;SOR=0.295;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,21:40:99:577,0,526
2	208693307	rs720631	T	C	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.496;SB=-7.300e+01;SOR=0.495;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:362,0,290
2	208717440	rs10932211	A	G	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.037;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=1.409;SB=-3.720e+02;SOR=0.576;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:643,0,685
2	208811097	rs10932215	C	T	939.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.724;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.838;SB=-2.350e+02;SOR=0.572;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,36:76:99:968,0,1187
2	208841964	rs4441448	A	G	1795.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.606;HaplotypeScore=5.3355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.728;SB=-9.900e+02;SOR=0.754;VQSLOD=6.90;culprit=DP	GT:AD:DP:GQ:PL	0/1:75,71:146:99:1824,0,2075
2	208842394	rs2044971	A	G	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.414;SB=0.00;SOR=0.569;VQSLOD=10.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:201,0,245
2	208973074	rs34376060	G	A	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.726;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=0.693;SB=-2.801e+01;SOR=1.911;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:173,0,148
2	208986385	rs2305429	A	G	2383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.55;SB=-5.930e+02;SOR=2.551;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2412,178,0
2	208986637	rs2305430	T	C	3331.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=1.457;SB=-1.154e+03;SOR=0.990;VQSLOD=3.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,106:107:99:3360,247,0
2	208989037	rs2242074	A	G	341.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-3.876e+01;SOR=3.258;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:370,27,0
2	209007559	rs796287	T	G	3098.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-1.390e+03;SOR=1.493;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3127,223,0
2	209007661	.	A	G	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.889;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.695;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.99;ReadPosRankSum=-1.543;SB=-1.590e+02;SOR=0.223;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,22:41:99:643,0,540
2	209010558	rs2854723	A	G	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=11.702;HaplotypeScore=3.6770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=0.515;SB=-2.120e+02;SOR=0.073;VQSLOD=6.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,18:47:99:453,0,893
2	209010891	rs2289917	G	A	1624.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.122;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=5.369;HaplotypeScore=3.4344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=-0.418;SB=-5.200e+02;SOR=1.259;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,57:101:99:1653,0,1188
2	209030330	.	G	GT	502.73	PASS	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.46;RPA=11,12;RU=T;SB=-3.177e+01;SOR=4.514;STR;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:540,57,0
2	209030572	rs6721025	A	G	1494.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.97;SB=-3.290e+02;SOR=2.636;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1523,111,0
2	209035485	rs6435420	T	G	965.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-1.513e+02;SOR=3.334;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:994,72,0
2	209035658	rs6748431	C	T	3453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-1.580e+03;SOR=1.257;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3482,259,0
2	209035849	rs4292037	A	C	1622.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=-1.831e+02;SOR=3.816;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1651,120,0
2	209036605	rs10932244	T	C	1693.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=-9.690e+02;SOR=1.123;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1722,123,0
2	209036712	rs10804166	T	C	2197.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-1.020e+03;SOR=1.230;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2226,166,0
2	209036778	rs6435421	A	G	1628.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.880;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.61;ReadPosRankSum=-0.045;SB=-8.750e+02;SOR=0.808;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,53:55:88:1657,88,0
2	209037005	rs7564942	T	C	599.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=0.00;SOR=5.784;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:628,51,0
2	209045657	rs10208685	T	C	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.647;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=7.164;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.593;SB=-8.197e+01;SOR=0.054;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:369,0,534
2	209045839	rs56342568	T	C	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-0.835;SB=-4.276e+01;SOR=0.223;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:237,0,200
2	209046162	rs6435425	G	A	679.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.751;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=1.145;SB=-1.765e+00;SOR=2.925;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,20:30:99:708,0,280
2	209046164	rs6435426	A	G	696.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.008;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=1.123;SB=-1.768e+00;SOR=2.925;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,20:30:99:725,0,270
2	209047699	.	A	T	978.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.113;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.930;HaplotypeScore=1.8279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.19;ReadPosRankSum=1.742;SB=-4.990e+02;SOR=0.988;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,36:69:99:1007,0,843
2	209049840	rs10804167	C	T	921.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.11;SB=-4.710e+02;SOR=1.418;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:69:950,69,0
2	209101905	rs57383668	GA	G	1287.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.28;RPA=10,9;RU=A;SB=-6.610e+02;SOR=0.733;STR;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1325,147,0
2	209110270	rs368907458	C	CTTT	353.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQ0=0;MQRankSum=0.640;QD=27.19;RPA=19,22;RU=T;ReadPosRankSum=-1.604;SB=-1.283e+02;SOR=0.593;STR;VQSLOD=2.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,12:17:3:389,0,3
2	209120640	rs1446325	C	T	496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.075e+02;SOR=2.049;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:525,42,0
2	209138946	rs6705163	C	T	769.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-7.797e+01;SOR=3.912;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:798,60,0
2	209150747	.	T	C	481.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.889;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.94;ReadPosRankSum=0.429;SB=-4.176e+01;SOR=0.765;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,15:21:99:510,0,174
2	209163556	rs7569723	C	T	2048.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-6.690e+02;SOR=2.200;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2077,157,0
2	209168853	rs893256	C	T	1027.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-3.430e+02;SOR=1.819;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1056,75,0
2	209176807	rs12624141	T	G	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=0.00;SOR=4.804;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:410,30,0
2	209180234	rs67470395	C	CTTTG	2937.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;RPA=1,2;RU=TTTG;SB=-1.045e+03;SOR=1.378;STR;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:55:99:2975,141,0
2	209184980	rs10932258	G	A	499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-2.790e+02;SOR=1.061;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:528,39,0
2	209184999	rs10932259	C	T	558.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SB=-3.000e+02;SOR=1.022;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:587,42,0
2	209189912	rs893255	A	G	2128.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.47;SB=-6.290e+02;SOR=1.835;VQSLOD=3.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2157,160,0
2	209190330	rs2363468	T	C	3103.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-1.298e+03;SOR=1.203;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3132,235,0
2	209190519	rs893254	A	T	4385.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-2.180e+03;SOR=1.230;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4414,322,0
2	209190528	rs893253	C	G	4026.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-2.118e+03;SOR=1.092;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4055,295,0
2	209191082	rs1529979	C	A	2980.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-1.109e+03;SOR=1.582;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3009,226,0
2	209191099	rs1529978	T	C	2723.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.92;SB=-1.087e+03;SOR=1.493;VQSLOD=4.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2752,217,0
2	209194696	rs1437414	G	C	855.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.61;SB=-3.950e+02;SOR=1.402;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:63:884,63,0
2	209195099	rs1866045	G	A	557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.31;SB=0.00;SOR=5.549;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:586,45,0
2	209195133	rs12694109	T	C	918.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.80;SB=-7.597e+01;SOR=4.255;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:947,72,0
2	209195491	rs67509921	G	GAGA	681.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.25;SB=0.00;SOR=5.136;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:36:719,36,0
2	209199945	rs2363469	A	G	848.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=-3.876e+01;SOR=4.892;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:877,66,0
2	209201054	rs6744236	T	C	341.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=0.00;SOR=4.804;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:370,30,0
2	209201739	rs7596571	T	C	929.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-2.001e+02;SOR=2.985;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:958,75,0
2	209203122	rs4675756	C	G	805.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=0.00;SOR=6.184;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:834,63,0
2	209204714	rs2289171	G	A	264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.433;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.407;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=0.000;SB=-2.203e+01;SOR=1.845;VQSLOD=7.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:27:99:293,0,477
2	209209827	rs2304544	G	A	1217.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-4.410e+02;SOR=1.455;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:45:93:1246,93,0
2	209209997	rs2043718	C	T	643.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-1.165e+02;SOR=3.160;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:672,51,0
2	209212707	rs2304545	G	A	2854.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-1.306e+03;SOR=1.440;VQSLOD=7.02;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2883,208,0
2	209214770	rs2118297	A	G	1328.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-7.990e+02;SOR=0.829;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1357,102,0
2	209215448	rs994696	A	G	1748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-2.800e+02;SOR=3.306;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1777,129,0
2	209215586	rs994697	A	G	3975.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-2.149e+03;SOR=0.981;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4004,289,0
2	209219190	rs6435453	A	G	1084.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-4.276e+01;SOR=5.283;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1113,81,0
2	209220157	rs10208191	G	T	311.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-3.477e+01;SOR=3.258;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:340,27,0
2	209224874	rs11357589	CA	C	970.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;RPA=2,1;RU=A;SB=-3.510e+02;SOR=1.426;STR;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:24:69:1008,69,0
2	209293168	rs962595	C	T	551.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-2.001e+02;SOR=1.739;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:580,45,0
2	209315573	rs1370371	G	A	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.318;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=22.001;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=0.840;SB=-2.720e+02;SOR=1.479;VQSLOD=4.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,37:95:99:944,0,1797
2	209345944	rs34570534	CT	C	135.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.730;POSITIVE_TRAIN_SITE;QD=10.44;RPA=17,16;RU=T;ReadPosRankSum=-1.352;SB=0.00;SOR=2.147;STR;VQSLOD=2.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,10:17:40:173,0,40
2	209353607	rs6726003	A	G	630.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=0.00;SOR=5.670;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:659,48,0
2	209353656	rs11335842	GT	G	1088.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.92;RPA=10,9;RU=T;SB=-1.890e+02;SOR=3.056;STR;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1126,126,0
2	209358027	rs3820900	C	T	1759.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.53;SB=-9.760e+02;SOR=0.693;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1788,135,0
2	210045748	rs1837432	C	T	578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-3.000e+02;SOR=0.914;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:607,45,0
2	210517785	rs2254169	C	T	964.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.39;SB=-3.876e+01;SOR=5.136;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:75:993,75,0
2	210555239	rs72999563	T	C	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.103;SB=0.00;SOR=0.495;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:234,0,303
2	210555776	rs3768812	C	T	166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.928;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=0.831;SB=-3.400e+01;SOR=0.399;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:195,0,319
2	210564805	rs13424278	A	G	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-0.525;SB=0.00;SOR=0.859;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:186,0,166
2	210594540	rs4673486	A	G	1643.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-6.710e+02;SOR=1.609;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1672,123,0
2	210594717	.	C	CT	792.73	PASS	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;RPA=5,6;RU=T;SB=-1.631e+02;SOR=2.670;STR;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:28:78:830,78,0
2	210594768	rs7594601	T	C	1056.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-4.050e+02;SOR=1.382;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1085,81,0
2	210636705	.	A	G	64.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=2.7569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-0.191;SB=-3.501e+01;SOR=0.132;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:93:93,0,209
2	210642473	rs10932308	A	T	409.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-4.176e+01;SOR=3.611;VQSLOD=8.11;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:33:438,33,0
2	210674052	rs71420773	C	T	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.21;ReadPosRankSum=0.000;SB=-5.800e+01;SOR=0.283;VQSLOD=9.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:122,0,290
2	210704200	rs9288414	C	A	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=-0.493;SB=0.00;SOR=2.303;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:49:248,0,49
2	210705348	rs10178675	C	G	548.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.102;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-0.115;SB=-3.020e+02;SOR=0.464;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,21:54:99:577,0,959
2	210714162	rs2191906	A	G	450.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.84;ReadPosRankSum=1.139;SB=-2.690e+02;SOR=0.632;VQSLOD=8.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,20:51:99:479,0,955
2	210737363	rs16843880	T	A	546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-0.929;SB=-2.801e+01;SOR=0.641;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:575,0,611
2	210745681	rs2370838	C	A	2589.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-1.070e+03;SOR=1.552;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2618,193,0
2	210745855	rs17748818	C	T	1119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.811;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-2.811;SB=-4.880e+02;SOR=0.862;VQSLOD=7.29;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1148,0,1243
2	210760977	rs73003387	C	T	758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=2.330;SB=-4.340e+02;SOR=0.836;VQSLOD=7.80;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,28:54:99:787,0,740
2	210786137	rs9288415	G	A	680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.72;SB=0.00;SOR=4.514;VQSLOD=2.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:709,54,0
2	210843383	rs2075117	G	A	1181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.014;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=1.057;SB=-6.710e+02;SOR=0.813;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,50:99:99:1210,0,1380
2	210846867	rs2723222	A	G	110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.82;ReadPosRankSum=-0.485;SB=-5.300e+01;SOR=0.479;VQSLOD=8.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,6:29:99:139,0,654
2	210846925	rs73003402	C	T	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.188;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.26;ReadPosRankSum=0.401;SB=-7.500e+01;SOR=1.449;VQSLOD=6.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,12:41:99:326,0,866
2	210849283	rs10804178	T	C	480.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.431;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=-0.124;SB=0.00;SOR=1.721;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,14:20:99:509,0,106
2	210856658	rs7589926	G	A	533.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.240;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.342;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=-0.468;SB=-2.400e+02;SOR=0.399;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:39:99:562,0,492
2	210874246	rs3738934	T	C	783.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.462;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.462;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-1.493;SB=-2.080e+02;SOR=0.355;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,29:52:99:812,0,712
2	210880893	rs7570090	C	T	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=0.246;SB=-1.290e+02;SOR=1.061;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:362,0,288
2	210882171	rs2075116	A	T	644.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.212;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.223;HaplotypeScore=5.5762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=0.092;SB=-2.050e+02;SOR=0.283;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,22:41:99:673,0,537
2	210889759	rs6435550	A	G	165.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=0.375;SB=0.00;SOR=0.473;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:194,0,266
2	211060050	rs2286963	T	G	1078.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.204;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.327;HaplotypeScore=2.6819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.723;SB=-2.410e+02;SOR=1.031;VQSLOD=8.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,35:70:99:1107,0,993
2	211069438	rs263677	G	A	2172.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-4.780e+02;SOR=2.267;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2201,166,0
2	211074909	rs3764913	T	C	1194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.425;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.824;HaplotypeScore=1.6809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-0.038;SB=-6.870e+02;SOR=0.754;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,45:88:99:1223,0,1053
2	211162998	rs7592060	G	A	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.868;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=-0.846;SB=0.00;SOR=0.223;VQSLOD=8.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,8:25:99:233,0,619
2	211163063	.	TAC	T,TACACACACAC	2652.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.639;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.86;MQ0=0;MQRankSum=0.312;POSITIVE_TRAIN_SITE;QD=29.47;RPA=14,13,18;RU=AC;ReadPosRankSum=-1.074;SB=-6.320e+02;SOR=1.314;STR;VQSLOD=3.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,33,20:59:99:2690,1626,1885,1162,0,3396
2	211167132	rs2292300	A	T	355.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.47;ReadPosRankSum=1.255;SB=-1.420e+02;SOR=1.140;VQSLOD=7.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,14:42:99:384,0,716
2	211168181	rs373486172	T	TC	824.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.56;ReadPosRankSum=0.634;SB=-1.290e+02;SOR=0.657;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,20:35:99:862,0,550
2	211168346	rs12469767	A	C	1272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=2.654;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-2.450;SB=-6.620e+02;SOR=0.948;VQSLOD=7.69;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:51,46:97:99:1301,0,1442
2	211168638	rs1472955	A	G	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.460;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-1.276;SB=0.00;SOR=1.022;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:213,0,167
2	211319824	rs2287432	T	C	1550.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-3.550e+02;SOR=2.303;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1579,117,0
2	211320041	rs10691255	G	GAA,GAAA	1273.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.390;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.10;MQ0=0;MQRankSum=0.706;POSITIVE_TRAIN_SITE;QD=31.07;RPA=12,14,15;RU=A;ReadPosRankSum=0.100;SB=-3.220e+02;SOR=1.609;STR;VQSLOD=2.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,28,10:49:99:1311,187,142,588,0,582
2	211341156	rs2287418	C	G	1375.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=-2.421e+02;SOR=3.145;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1404,102,0
2	211341204	.	G	GC	889.73	PASS	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;RPA=1,2;RU=C;SB=-4.776e+01;SOR=4.712;STR;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:927,63,0
2	211342502	rs17552879	G	A	1927.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-7.610e+02;SOR=1.571;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1956,147,0
2	211470041	.	A	T	1304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.580;SB=-5.050e+02;SOR=0.614;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,48:89:99:1333,0,1069
2	211476695	rs35548644	CT	C	66.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;RPA=13,12;RU=T;ReadPosRankSum=-0.712;SB=0.00;SOR=1.085;STR;VQSLOD=8.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,6:10:83:104,0,83
2	211481257	rs2287599	C	G	1044.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-0.449;SB=-5.130e+02;SOR=0.753;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,39:84:99:1073,0,1263
2	211512437	rs3213785	G	A	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.645;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=-0.434;SB=0.00;SOR=0.693;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:227,0,237
2	211513118	rs4673540	C	T	1778.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-3.040e+02;SOR=2.876;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1807,135,0
2	211515058	rs3213784	A	T	3250.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-1.741e+03;SOR=1.036;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3279,247,0
2	211521227	rs58225253	CT	C	418.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;DB;DP=30;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;RPA=15,14;RU=T;ReadPosRankSum=2.044;SB=-1.520e+02;SOR=0.164;STR;VQSLOD=7.42;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,26:30:22:456,0,22
2	211527827	.	GT	G	935.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=0.467;POSITIVE_TRAIN_SITE;QD=17.33;RPA=12,11;RU=T;ReadPosRankSum=-0.900;SB=-2.511e+02;SOR=1.022;STR;VQSLOD=3.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,47:55:47:973,0,47
2	211533070	rs10932347	A	G	3000.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-1.830e+03;SOR=0.693;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3029,223,0
2	211540507	rs1047891	C	A	1820.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-1.152e+03;SOR=0.693;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1849,135,0
2	212252809	rs934607	G	A	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.284;SB=-2.020e+02;SOR=0.551;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,15:29:99:453,0,398
2	212285103	rs2289086	T	C	471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.178;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=-1.417;SB=-5.700e+01;SOR=0.409;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:500,0,478
2	212286934	rs3791709	A	T	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-0.076;SB=-4.176e+01;SOR=0.188;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:305,0,291
2	212295590	.	G	GT	199.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;DP=18;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.10;RPA=3,4;RU=T;ReadPosRankSum=-0.800;SB=-3.976e+01;SOR=0.124;STR;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:237,0,295
2	212295875	rs6710946	C	T	1207.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-2.401e+02;SOR=2.964;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:93:1236,93,0
2	212488870	rs33915617	G	GC	442.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-5.276e+01;SOR=3.258;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:12:30:480,30,0
2	212578379	.	T	TA	68.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.75;RPA=14,15;RU=A;ReadPosRankSum=0.576;SB=-3.400e+01;SOR=0.551;STR;VQSLOD=8.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,7:28:99:106,0,315
2	212587321	rs13002712	G	A	1204.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-3.200e+02;SOR=2.494;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:93:1233,93,0
2	212615516	rs6757068	T	C	501.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.106;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.584;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-1.024;SB=-1.260e+02;SOR=1.795;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:530,0,347
2	213291199	rs10166403	A	G	99.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.406;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.87;ReadPosRankSum=-1.319;SB=-6.700e+01;SOR=0.250;VQSLOD=6.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:128,0,335
2	213790978	rs62186510	C	T	927.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-2.790e+02;SOR=2.093;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:956,72,0
2	213886454	rs2291241	A	T	2100.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-1.224e+03;SOR=0.971;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2129,157,0
2	213886647	rs3830257	A	ATTTTATCT	6037.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.65;RPA=1,2;RU=TTTTATCT;SB=-2.034e+03;SOR=1.532;STR;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:64:99:6075,178,0
2	213914343	rs2165444	C	T	915.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.58;ReadPosRankSum=1.316;SB=-2.341e+02;SOR=1.308;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,28:29:35:944,35,0
2	214012508	rs6709554	C	T	1025.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.069;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.745;HaplotypeScore=2.9445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=0.827;SB=-5.270e+02;SOR=0.598;VQSLOD=7.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,44:111:99:1054,0,1990
2	214161773	rs975956	C	T	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.37;ReadPosRankSum=0.017;SB=-1.230e+02;SOR=0.582;VQSLOD=8.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,11:38:99:264,0,597
2	214161849	rs1488988	C	T	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.254;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=7.185;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.79;ReadPosRankSum=-0.752;SB=-1.710e+02;SOR=0.829;VQSLOD=6.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,15:43:99:363,0,775
2	214174767	rs10498003	C	T	544.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.625;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.114;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.732;SB=-1.210e+02;SOR=1.364;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:573,0,490
2	214182100	rs10183630	A	T	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.838;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=-0.697;SB=-2.657e-01;SOR=2.336;VQSLOD=6.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,10:31:99:311,0,590
2	214228792	rs12469417	C	T	701.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;SB=-1.205e+02;SOR=3.160;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:730,54,0
2	214228959	rs4146048	G	A	808.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-2.381e+02;SOR=1.931;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:837,63,0
2	214233812	rs6752347	C	A	425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-2.351e+02;SOR=0.976;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:454,33,0
2	214287064	rs75432170	A	G	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.081;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.226;SB=-2.340e+02;SOR=0.659;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,27:58:99:718,0,875
2	214727150	rs2042790	T	C	228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-0.946;SB=-2.901e+01;SOR=1.179;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:257,0,391
2	214727221	rs2042791	A	C	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.255;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=0.124;SB=-1.330e+02;SOR=0.446;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,18:46:99:501,0,855
2	214727367	rs2042792	C	G	804.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.172;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.920;HaplotypeScore=2.8931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-0.278;SB=-4.170e+02;SOR=0.559;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,32:74:99:833,0,1221
2	215013787	rs2372225	A	G	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.167;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9972;MLEAC=1;MLEAF=0.500;MQ=61.06;MQ0=0;MQRankSum=-0.549;QD=5.75;ReadPosRankSum=1.147;SB=0.00;SOR=0.116;VQSLOD=1.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,6:25:99:172,0,648
2	215102884	rs9288491	T	C	1518.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-6.080e+02;SOR=1.659;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1547,114,0
2	215102929	rs1912207	T	A	1703.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-9.800e+02;SOR=0.884;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1732,126,0
2	215593261	.	C	CTT	236.74	PASS	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.67;RPA=15,17;RU=T;SB=0.00;SOR=4.804;STR;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:11:26:274,26,0
2	215595645	rs16852600	C	T	568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.372;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=-2.117;SB=-1.290e+02;SOR=0.976;VQSLOD=8.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,21:39:99:597,0,528
2	215595765	rs6435849	C	G	1648.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4725;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-7.730e+02;SOR=1.445;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1677,120,0
2	215595861	.	G	GA	365.73	PASS	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=26.12;RPA=10,11;RU=A;SB=-2.977e+01;SOR=3.912;STR;VQSLOD=3.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:24:42:403,42,0
2	215595872	rs28685662	G	A	474.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.91;SB=-4.176e+01;SOR=3.912;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:503,39,0
2	215610313	rs6730040	G	T	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.80;ReadPosRankSum=0.000;SB=0.00;SOR=1.270;VQSLOD=10.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:246,0,132
2	215610740	rs1838803	A	T	448.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=0.00;SOR=5.136;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:477,36,0
2	215632124	rs5031008	ATT	A	849.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;DB;DP=41;ExcessHet=3.0103;FS=4.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.73;RPA=4,2;RU=T;ReadPosRankSum=-0.235;SB=-3.800e+01;SOR=2.165;STR;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:887,0,881
2	215632155	rs5031009	T	C	901.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.758;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=6.140;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-0.342;SB=-1.900e+02;SOR=1.663;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,30:58:99:930,0,659
2	215632192	rs5031011	G	A	1195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.294;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.296;SB=-3.400e+02;SOR=0.693;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1224,0,1138
2	215632255	rs2070094	C	T	1344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.202;SB=-7.050e+02;SOR=0.619;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,48:103:99:1373,0,1498
2	215632256	rs2070093	A	G	3358.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-1.850e+03;SOR=0.967;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3387,250,0
2	215634055	rs6704780	C	T	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=0.635;SB=-2.004e+01;SOR=1.022;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:234,0,346
2	215645135	rs3768707	A	G	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.262;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-1.672;SB=0.00;SOR=0.527;VQSLOD=9.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:305,0,357
2	215645464	rs2229571	C	G	1755.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.154;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=2.331;HaplotypeScore=3.6375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.581;SB=-8.740e+02;SOR=0.465;VQSLOD=7.04;culprit=DP	GT:AD:DP:GQ:PL	0/1:68,60:128:99:1784,0,1957
2	215645545	rs2070096	C	G	1289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=4.736;HaplotypeScore=4.3812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.078;SB=-6.640e+02;SOR=0.615;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,49:107:99:1318,0,1691
2	215674090	rs35933323	T	G	626.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.013;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=0.540;SB=-2.210e+02;SOR=0.758;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,25:65:99:655,0,1058
2	215674224	rs1048108	G	A	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.476;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.487;SB=-1.970e+02;SOR=0.673;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,23:50:99:634,0,793
2	215674323	rs1129804	C	G	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.178;SB=-2.801e+01;SOR=1.609;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:244,0,326
2	215674341	rs17489363	A	G	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=1.679;SB=-1.765e+00;SOR=2.030;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:164,0,235
2	215674371	rs34732883	C	T	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=0.816;SB=-1.765e+00;SOR=1.329;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:119,0,141
2	215711848	rs35044385	A	G	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.334;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-0.819;SB=-1.280e+02;SOR=0.473;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:238,0,326
2	215797332	rs17426207	C	T	2232.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-8.660e+02;SOR=1.644;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2261,169,0
2	215797527	rs10532785	AATTC	A	1744.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.27;RPA=2,1;RU=ATTC;SB=-5.976e+01;SOR=5.211;STR;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:36:81:1782,81,0
2	215798724	rs943295	A	C	571.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=0.00;SOR=5.549;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:600,45,0
2	215802112	rs3738884	G	A	672.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=0.00;SOR=5.892;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:701,54,0
2	215809597	rs34433593	G	GTA	485.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.78;MQ0=0;QD=34.74;RPA=7,8;RU=TA;SB=0.00;SOR=5.136;STR;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:523,36,0
2	215812297	rs2274412	G	A	3619.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-1.233e+03;SOR=1.885;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3648,265,0
2	215820013	rs10498027	G	A	1228.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-6.350e+02;SOR=1.259;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:90:1257,90,0
2	215821580	rs17492577	T	C	666.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.74;SB=0.00;SOR=5.784;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:695,51,0
2	215823334	rs956132	C	T	433.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-1.145e+02;SOR=1.981;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:462,36,0
2	215833415	rs4673925	A	G	1689.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=-5.670e+02;SOR=2.049;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1718,123,0
2	215833622	rs6756540	G	T	1104.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-1.603e+02;SOR=3.545;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1133,84,0
2	215840414	rs17493319	C	A	726.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=0.00;SOR=5.994;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:755,57,0
2	215840829	rs7594021	A	G	345.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-7.697e+01;SOR=2.303;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:374,27,0
2	215847177	rs4610055	C	A	462.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.19;SB=0.00;SOR=5.283;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:491,39,0
2	215848034	rs7608150	T	C	875.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.49;SB=-4.120e+02;SOR=1.136;VQSLOD=4.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:904,66,0
2	215851246	rs7559069	A	G	505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=-4.276e+01;SOR=3.912;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:534,39,0
2	215855780	rs4533467	G	A	1160.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-2.700e+02;SOR=2.712;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1189,90,0
2	215865849	rs2049361	G	A	526.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=0.00;SOR=5.421;VQSLOD=8.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:555,42,0
2	215872334	rs940279	G	A	1977.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;SB=-8.240e+02;SOR=1.453;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2006,147,0
2	215874965	rs6733264	G	T	718.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=0.00;SOR=5.994;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:747,57,0
2	215875251	rs1409607	A	T	1355.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-2.051e+02;SOR=3.611;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1384,105,0
2	215876166	rs7560008	A	T	1238.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-2.311e+02;SOR=3.202;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1267,99,0
2	215878240	rs7594353	G	A	2102.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-1.031e+03;SOR=1.127;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2131,160,0
2	215878246	rs10192100	C	T	2086.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-1.068e+03;SOR=1.000;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:66:99:2115,157,0
2	215880108	rs6753310	C	T	588.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=0.00;SOR=5.549;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:617,45,0
2	215882529	rs6435868	G	A	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.25;SB=0.00;SOR=4.977;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:394,30,0
2	215890312	rs2177423	A	G	668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-4.176e+01;SOR=4.407;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:697,54,0
2	215890324	.	G	GT	510.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.321;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.21;RPA=10,11;RU=T;ReadPosRankSum=1.531;SB=-3.177e+01;SOR=2.584;STR;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,21:23:17:548,17,0
2	215890352	rs5838480	GTT	G	1036.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;MQRankSum=0.381;POSITIVE_TRAIN_SITE;QD=31.42;RPA=11,9;RU=T;ReadPosRankSum=0.189;SB=-2.370e+02;SOR=0.735;STR;VQSLOD=2.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,31:33:61:1074,61,0
2	215940242	rs6711179	T	C	1785.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-9.140e+02;SOR=1.101;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1814,132,0
2	215976231	rs2948978	A	T	450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=0.00;SOR=5.136;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:479,36,0
2	216182769	rs4672766	A	T	1036.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=0.00;SOR=6.593;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1065,78,0
2	216190020	rs2372536	C	G	773.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.334;SB=-4.690e+02;SOR=0.760;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,29:70:99:802,0,1128
2	216190654	rs7563206	C	T	657.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.524;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.250;SB=-9.400e+01;SOR=0.941;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,24:49:99:686,0,770
2	216190691	rs2177737	A	C	2733.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-5.000e+02;SOR=3.014;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2762,205,0
2	216191515	rs6751557	C	T	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-0.880;SB=-9.732e-01;SOR=2.636;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:161,0,206
2	216199881	rs7594036	T	G	383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=0.00;SOR=4.804;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:412,30,0
2	216200907	rs13002576	C	G	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.465;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.42;ReadPosRankSum=-0.784;SB=-1.430e+02;SOR=0.399;VQSLOD=7.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,11:33:99:273,0,583
2	216209472	rs13010249	A	G	592.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.874;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.213;SB=-2.310e+02;SOR=0.880;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,25:47:99:621,0,529
2	216211712	rs10932609	A	T	2211.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-7.590e+02;SOR=2.115;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2240,166,0
2	216212089	rs4673991	C	T	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=-1.087;SB=-3.477e+01;SOR=0.387;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:360,0,224
2	216212279	rs4673992	G	C	1905.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-9.840e+02;SOR=1.197;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1934,141,0
2	216212339	rs4673993	T	C	808.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.613;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=1.278;SB=-3.110e+02;SOR=0.892;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,26:44:99:837,0,468
2	216213689	rs61469558	A	T	656.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.490;HaplotypeScore=6.7656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.601;SB=-1.690e+02;SOR=0.437;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,24:44:99:685,0,572
2	216214124	rs4672768	G	A	608.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.916;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=0.412;SB=-2.900e+02;SOR=0.191;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,18:27:99:637,0,275
2	216214492	rs10498036	T	G	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.140;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-0.098;SB=-8.397e+01;SOR=0.132;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:286,0,203
2	216227017	.	T	C	51.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.18;ReadPosRankSum=1.150;SB=0.00;SOR=0.223;VQSLOD=7.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:80:80,0,240
2	216229692	rs11651	A	G	965.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=6.036;HaplotypeScore=2.9988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-1.382;SB=-5.060e+02;SOR=0.695;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,38:72:99:994,0,878
2	216230529	rs10577918	ATT	A	112.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.67;RPA=17,15;RU=T;ReadPosRankSum=0.344;SB=0.00;SOR=0.569;STR;VQSLOD=9.63;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,6:17:57:150,0,57
2	216230533	rs2372540	T	A	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.28;ReadPosRankSum=-1.309;SB=0.00;SOR=1.371;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,11:17:99:373,0,180
2	216230535	rs147589042	T	A	83.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.93;ReadPosRankSum=1.214;SB=0.00;SOR=0.193;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:112,0,407
2	216235089	rs1250209	C	T	3575.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-2.128e+03;SOR=0.782;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3604,265,0
2	216243832	rs1250204	T	C	1953.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-6.890e+02;SOR=1.765;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1982,147,0
2	216248305	rs1250203	G	T	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.136;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=1.170;SB=-3.200e+01;SOR=0.580;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,13:36:99:375,0,762
2	216249587	rs13652	C	T	300.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.175;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.555;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.27;ReadPosRankSum=-0.055;SB=-2.340e+02;SOR=0.399;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,16:48:99:329,0,876
2	216249819	rs1250201	C	T	336.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-4.176e+01;SOR=3.258;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:365,27,0
2	216253039	rs1250215	G	C	1150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.687;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.407;SB=-7.470e+02;SOR=0.499;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,47:93:99:1179,0,1241
2	216256221	rs4328631	T	G	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=0.352;SB=0.00;SOR=0.293;VQSLOD=9.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:178,0,366
2	216256227	rs940738	G	C	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-0.702;SB=0.00;SOR=0.446;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:262,0,396
2	216256615	rs6709607	T	C	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.532;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.960;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=0.203;SB=-1.807e+01;SOR=1.329;VQSLOD=7.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,10:32:99:286,0,616
2	216262621	rs6725958	A	C	1380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.218;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.743;HaplotypeScore=2.6206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.092;SB=-7.200e+02;SOR=0.808;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,52:103:99:1409,0,1414
2	216262788	rs2577297	A	G	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.337;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=0.140;SB=-1.030e+02;SOR=0.576;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:409,0,580
2	216263926	rs2692224	C	A	735.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.198;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.448;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=-0.341;SB=-1.210e+02;SOR=1.135;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,26:49:99:764,0,729
2	216263938	.	C	CT	1055.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;DP=50;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.11;RPA=1,2;RU=T;ReadPosRankSum=-0.068;SB=-2.040e+02;SOR=1.170;STR;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:1093,0,894
2	216269030	.	T	TTTTTTG	948.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DP=38;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=1.442;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.708;SB=-7.100e+01;SOR=1.493;VQSLOD=0.344;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,13:38:99:986,0,1939
2	216269095	rs13306359	C	T	1107.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.044;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=7.708;HaplotypeScore=4.1504;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=1.155;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.951;SB=-2.640e+02;SOR=1.559;VQSLOD=0.105;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,39:89:99:1136,0,1324
2	216269209	rs1053238	T	G	1836.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.576;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.619;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.597;SB=-9.990e+02;SOR=0.616;VQSLOD=7.01;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,66:142:99:1865,0,2024
2	216269254	rs7589580	T	G	1824.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.085;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=1.318;HaplotypeScore=1.5780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.602;SB=-1.132e+03;SOR=0.555;VQSLOD=6.96;culprit=DP	GT:AD:DP:GQ:PL	0/1:76,68:145:99:1853,0,1985
2	216271763	rs17457002	A	T	190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=2.009;SB=0.00;SOR=0.425;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:219,0,329
2	216271812	rs7592898	A	T	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.899;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-0.049;SB=0.00;SOR=0.354;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,14:36:99:417,0,738
2	216272819	rs7570208	C	G	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.865;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=6.107;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.744;SB=-5.150e-01;SOR=2.833;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:243,0,284
2	216272900	rs2577301	T	G	1422.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-4.400e+02;SOR=2.093;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1451,108,0
2	216287093	rs1250248	A	G	129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.606;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=0.982;SB=0.00;SOR=0.260;VQSLOD=9.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:158,0,349
2	216288841	rs56137176	T	C	1151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=4.636;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-0.537;SB=-3.590e+02;SOR=0.219;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,43:70:99:1180,0,803
2	216299629	rs1250247	C	G	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-1.270;SB=-1.765e+00;SOR=1.609;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:221,0,217
2	216300185	rs1250258	C	T	171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-1.408;SB=0.00;SOR=0.569;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:200,0,236
2	216300482	rs1250259	T	A	395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=-0.371;SB=-1.950e+02;SOR=0.765;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,17:41:99:424,0,629
2	216807914	rs13553	T	G	106.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=0.712;SB=0.00;SOR=0.412;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:135,0,205
2	216861273	rs2303845	T	C	503.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.908;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.493;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-0.411;SB=-4.276e+01;SOR=0.139;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,17:38:99:532,0,698
2	216878008	rs1864253	C	G	791.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=-4.050e+02;SOR=1.101;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:820,60,0
2	216903894	rs10197542	A	C	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.183;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=0.880;SB=-2.460e+02;SOR=0.801;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,25:45:99:694,0,538
2	216904019	rs9288513	A	T	1057.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.769;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.365;SB=-6.160e+02;SOR=0.504;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,41:85:99:1086,0,1199
2	216908910	rs1991533	T	C	848.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-4.370e+02;SOR=1.179;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:877,63,0
2	216908923	rs2163015	C	G	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.072;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-0.857;SB=-1.890e+02;SOR=0.339;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:363,0,353
2	216923679	rs1429148	C	T	604.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.305;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.662;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-0.338;SB=-2.740e+02;SOR=1.279;VQSLOD=8.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,25:60:99:633,0,1035
2	216981186	rs705649	G	A	71.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.52;ReadPosRankSum=-0.723;SB=-5.600e+01;SOR=0.223;VQSLOD=7.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:100,0,189
2	216982370	rs3815855	C	G	1343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.590;SB=-5.010e+02;SOR=0.653;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,49:89:99:1372,0,1236
2	216992093	rs4503989	T	C	913.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.031;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=-0.509;SB=-2.450e+02;SOR=0.706;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,33:57:99:942,0,725
2	217012901	rs207906	A	G	1700.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=-7.960e+02;SOR=1.278;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1729,123,0
2	217024697	rs58550995	CT	C	158.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;RPA=12,11;RU=T;ReadPosRankSum=1.521;SB=0.00;SOR=2.147;STR;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,10:13:47:196,0,47
2	217055171	rs12470053	A	G	1419.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=-1.593e+02;SOR=3.664;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1448,108,0
2	217059428	rs3732023	G	A	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-0.437;SB=0.00;SOR=0.859;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:207,0,145
2	217059809	rs3821102	G	A	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-1.068;SB=0.00;SOR=0.551;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:156,0,205
2	217069151	rs1438162	A	G	612.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.736;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-0.033;SB=-2.490e+02;SOR=0.521;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,23:46:99:641,0,659
2	217081557	rs207896	T	C	1403.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-9.410e+02;SOR=0.735;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1432,102,0
2	217082026	rs207897	C	T	405.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SB=0.00;SOR=4.977;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:434,33,0
2	217123958	rs169616	T	C	860.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-6.997e+01;SOR=4.091;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:889,66,0
2	217148417	rs876771	C	A	4597.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-1.654e+03;SOR=1.908;VQSLOD=4.51;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4626,331,0
2	217148546	rs2249264	A	G	685.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=0.00;SOR=5.892;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:714,54,0
2	217281150	rs3214962	AC	A	636.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=51;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;RPA=8,7;RU=C;ReadPosRankSum=-0.646;SB=-1.550e+02;SOR=0.368;STR;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:51:99:674,0,632
2	217311609	rs2738284	G	A	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=10.227;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=2.445;SB=-4.700e+01;SOR=0.603;VQSLOD=4.87;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:99:151,0,324
2	217347193	rs116315714	G	A	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=6.021;HaplotypeScore=2.8246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.500;SB=-5.150e-01;SOR=2.522;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:26:99:328,0,387
2	217364452	rs284573	C	G	50.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.99;ReadPosRankSum=2.096;SB=-9.732e-01;SOR=0.941;VQSLOD=7.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,4:17:79:79,0,448
2	217364539	rs284572	C	T	1313.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;SB=-6.800e+02;SOR=0.914;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1342,99,0
2	217475199	rs16856415	G	A	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.603;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.90;ReadPosRankSum=-2.272;SB=-6.600e+01;SOR=0.693;VQSLOD=8.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,7:23:99:141,0,384
2	217475433	rs34008178	GT	G	831.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;DB;DP=44;ExcessHet=3.0103;FS=6.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;RPA=3,2;RU=T;ReadPosRankSum=-0.771;SB=-3.100e+02;SOR=1.139;STR;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,24:44:99:869,0,599
2	217541582	rs2160549	T	C	1945.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.02;SB=-1.388e+03;SOR=0.807;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1974,138,0
2	217736131	rs2241191	G	A	585.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.937;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.663;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=2.286;SB=-1.800e+02;SOR=0.407;VQSLOD=7.53;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,21:34:99:614,0,334
2	218577575	rs1835333	T	A	829.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.92;SB=-4.276e+01;SOR=4.892;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:858,66,0
2	218577813	rs148961389	AC	A	662.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DB;DP=65;ExcessHet=3.0103;FS=2.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;RPA=7,6;RU=C;ReadPosRankSum=0.332;SB=-1.950e+02;SOR=1.056;STR;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,24:65:99:700,0,161
2	218577819	rs1430120	C	G	948.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.077;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-0.566;SB=-4.040e+02;SOR=0.458;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,36:60:99:977,0,709
2	218604247	rs4672848	A	C	344.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-4.276e+01;SOR=3.258;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:373,27,0
2	218604302	rs11336139	GA	G	515.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.488;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.42;RPA=11,10;RU=A;ReadPosRankSum=-0.679;SB=-1.651e+02;SOR=0.906;STR;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,22:23:44:553,44,0
2	218682474	rs12694422	A	G	518.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=-0.779;SB=-3.230e+02;SOR=0.813;VQSLOD=9.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,23:58:99:547,0,905
2	218682771	rs3796026	A	G	563.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.000;SB=-2.740e+02;SOR=0.686;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,20:45:99:592,0,671
2	218683154	rs2571445	A	G	555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.553;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.111;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-1.269;SB=-2.140e+02;SOR=0.910;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,22:53:99:584,0,803
2	218683257	rs2571442	A	G	726.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-1.207;SB=-4.520e+02;SOR=0.708;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,29:62:99:755,0,928
2	218683368	rs34144104	C	T	709.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.116;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-1.691;SB=-3.440e+02;SOR=0.471;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,27:54:99:738,0,632
2	218694510	rs55877504	CT	C	463.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;RPA=3,2;RU=T;ReadPosRankSum=0.590;SB=-2.110e+02;SOR=0.593;STR;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:30:99:501,0,487
2	218694512	rs55694913	T	G	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.96;ReadPosRankSum=0.633;SB=-2.080e+02;SOR=0.593;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:375,0,385
2	218694551	rs16858298	A	G	468.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.679;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=4.993;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.447;SB=-1.980e+02;SOR=1.609;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:497,0,488
2	218694842	rs4674219	C	A	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=8.383;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.543;SB=-1.210e+02;SOR=0.728;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:268,0,155
2	218694916	rs146060788	C	T	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.994;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.75;ReadPosRankSum=0.169;SB=-2.501e+01;SOR=0.765;VQSLOD=8.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:77:77,0,373
2	218694962	rs10165160	C	G	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=0.589;SB=-1.460e+02;SOR=0.495;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:360,0,203
2	218712918	rs3796031	C	T	939.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.760;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=4.478;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.820;SB=-5.340e+02;SOR=0.342;VQSLOD=7.38;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:42,36:78:99:968,0,1141
2	218745477	rs2288164	G	T	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.587;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:419,0,371
2	218745685	rs10199795	G	A	1243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.066;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=6.645;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-1.476;SB=-5.940e+02;SOR=0.250;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,46:77:99:1272,0,914
2	218746990	rs2303381	A	T	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.069;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=0.415;SB=-3.780e+02;SOR=0.883;VQSLOD=7.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,27:64:99:643,0,969
2	218747190	rs2303383	T	C	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.200;SB=0.00;SOR=0.693;VQSLOD=10.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:178,0,127
2	218749626	rs2288165	T	C	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.204;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-0.855;SB=-2.601e+01;SOR=0.976;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,12:27:99:360,0,465
2	218750359	rs6714587	G	A	690.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.217;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-0.843;SB=-6.500e+01;SOR=1.148;VQSLOD=8.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,23:39:99:719,0,492
2	218750377	rs12990490	C	T	724.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.745;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=8.711;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=1.341;SB=-5.300e+01;SOR=2.558;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,23:46:99:753,0,613
2	218750453	.	A	AG	3428.73	PASS	AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;RPA=2,3;RU=G;SB=-1.532e+03;SOR=0.961;STR;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3466,247,0
2	218750703	rs2288166	C	T	629.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.525;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.744;SB=-2.690e+02;SOR=0.709;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:658,0,564
2	218750731	rs2288167	G	C	806.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.504;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=1.154;SB=-2.110e+02;SOR=1.130;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:56:99:835,0,711
2	218750734	rs2288168	T	A	850.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.681;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.121;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.728;SB=-2.640e+02;SOR=1.033;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,30:57:99:879,0,771
2	218750817	rs10211238	T	C	854.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-0.082;SB=-5.500e+02;SOR=0.807;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,35:70:99:883,0,775
2	218758070	rs56217129	C	A	1078.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.493;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.541;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.248;SB=-9.100e+01;SOR=1.226;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1107,0,967
2	218758123	rs58297965	G	GCGCACA,GCA	5350.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.170;DB;DP=136;ExcessHet=3.0103;FS=3.914;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.88;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.85;ReadPosRankSum=0.522;SB=-1.867e+03;SOR=1.260;VQSLOD=1.07;culprit=DP	GT:AD:DP:GQ:PL	1/2:15,52,59:136:99:5388,1862,4574,2389,0,2529
2	218759674	rs2288169	G	C	1121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.293;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.551;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-0.741;SB=-5.430e+02;SOR=0.317;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1150,0,1086
2	218768422	rs3791936	T	G	773.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.104;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-1.113;SB=-4.180e+02;SOR=0.798;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,32:62:99:802,0,780
2	218770003	rs7600493	G	A	1078.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-1.258;SB=-6.370e+02;SOR=0.703;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,41:94:99:1107,0,1403
2	218770984	rs2288170	C	T	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=2.125;SB=-6.500e+01;SOR=0.818;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:292,0,244
2	218784778	rs4672856	C	G	139.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.671;HaplotypeScore=2.9988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.35;ReadPosRankSum=0.663;SB=-2.657e-01;SOR=2.110;VQSLOD=6.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:99:168,0,428
2	218784781	rs4672857	G	A	153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.565;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=5.647;HaplotypeScore=2.9988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.69;ReadPosRankSum=0.840;SB=-1.352e-01;SOR=2.437;VQSLOD=6.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,6:23:99:182,0,441
2	218784877	rs7590152	A	G	1129.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-5.810e+02;SOR=1.179;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:84:1158,84,0
2	218801767	rs4674232	C	T	1160.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-4.950e+02;SOR=1.547;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1189,87,0
2	218867708	rs13382750	C	A	406.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.693;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=0.198;SB=-1.030e+02;SOR=0.481;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:435,0,170
2	218867737	rs74270368	C	T	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=-1.441;SB=-9.732e-01;SOR=1.721;VQSLOD=6.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:118,0,220
2	218925149	rs6758271	G	A	1341.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-5.150e+02;SOR=1.765;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1370,99,0
2	218935139	rs4672868	A	G	194.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=-1.111;SB=0.00;SOR=1.609;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:90:223,0,90
2	218937527	rs56214433	G	A	616.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.157;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-0.196;SB=-2.650e+02;SOR=1.071;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,24:48:99:645,0,550
2	218939630	rs10932744	C	T	312.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-0.987;SB=-6.400e+01;SOR=1.296;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:341,0,316
2	218940259	rs7423696	C	T	704.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=10.717;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.962;SB=-3.430e+02;SOR=0.693;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,26:49:99:733,0,733
2	218980183	rs7425447	T	C	214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-0.923;SB=-1.180e+02;SOR=0.892;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:243,0,136
2	219000310	rs2230054	C	T	1667.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.058;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=2.371;SB=-8.600e+02;SOR=0.680;VQSLOD=7.00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:80,58:139:99:1696,0,2351
2	219082119	rs2271541	G	T	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.001;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=16.406;HaplotypeScore=5.4927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=0.445;SB=-2.657e-01;SOR=4.804;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:361,0,222
2	219082330	rs12694432	A	G	636.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.301;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=-2.961;SB=-1.120e+02;SOR=1.101;VQSLOD=8.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,19:25:99:665,0,168
2	219093278	rs60528331	A	G	348.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-8.297e+01;SOR=2.670;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:377,30,0
2	219099260	rs1018288	G	C	867.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.50;SB=-3.577e+01;SOR=4.892;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:66:896,66,0
2	219099484	rs10932765	T	C	600.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.264;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.854;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=1.492;SB=-6.700e+01;SOR=1.255;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:629,0,504
2	219103313	.	CTTT	C	746.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=0.320;POSITIVE_TRAIN_SITE;QD=18.67;RPA=22,19;RU=T;ReadPosRankSum=-1.133;SB=-4.133e+00;SOR=1.143;STR;VQSLOD=3.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,27:42:99:784,0,361
2	219103580	rs10169718	A	G	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.505;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.294;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=1.015;SB=-6.700e+01;SOR=2.494;VQSLOD=6.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,21:31:99:694,0,271
2	219104316	rs34974153	AT	A	128.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DB;DP=24;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.15;RPA=16,15;RU=T;ReadPosRankSum=-0.578;SB=-1.768e+00;SOR=2.147;STR;VQSLOD=4.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,10:24:99:166,0,145
2	219117482	rs35271699	G	A	339.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.986;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=1.016;SB=-4.176e+01;SOR=0.223;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:368,0,339
2	219118831	rs376913304	TA	T	109.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=0.870;QD=4.22;RPA=16,15;RU=A;ReadPosRankSum=-1.822;SB=-1.227e+01;SOR=1.112;STR;VQSLOD=0.612;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,10:30:99:147,0,340
2	219128506	rs2292549	C	T	1196.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-5.100e+02;SOR=1.432;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1225,90,0
2	219138940	rs4791	C	T	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.854;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=0.497;SB=-6.500e+01;SOR=0.730;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:201,0,366
2	219139573	rs6734242	G	A	1028.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.10;SB=-7.297e+01;SOR=4.479;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:81:1057,81,0
2	219140288	rs2292550	G	C	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.667;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-1.207;SB=-2.880e+02;SOR=0.641;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,23:52:99:521,0,868
2	219141546	rs4674281	C	T	482.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=0.00;SOR=5.283;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:511,39,0
2	219142023	rs2168703	G	A	707.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-1.931e+02;SOR=2.093;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:736,57,0
2	219142491	rs2271543	C	T	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.633;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-0.057;SB=-2.230e+02;SOR=0.675;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,16:39:99:454,0,686
2	219142492	rs2168704	G	A	639.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.525;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=-0.179;SB=-3.390e+02;SOR=0.824;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,23:38:99:668,0,437
2	219142594	rs3817266	C	T	463.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.536;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.468;SB=-2.210e+02;SOR=1.080;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:492,0,595
2	219142773	rs6707559	C	T	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.128;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.180;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-0.817;SB=-1.040e+02;SOR=0.116;VQSLOD=7.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,9:19:99:209,0,290
2	219143229	rs2292551	G	A	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.756;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.891;HaplotypeScore=3.3619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-0.139;SB=-5.070e+02;SOR=0.476;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,39:82:99:944,0,1110
2	219143327	rs2292552	T	C	846.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.646;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.386;SB=-4.460e+02;SOR=0.593;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,33:71:99:875,0,1056
2	219144089	rs12987180	G	A	587.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.920;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.054;SB=-2.260e+02;SOR=0.773;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,24:59:99:616,0,968
2	219144149	rs12987219	G	A	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.234;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.069;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=0.235;SB=-2.501e+01;SOR=1.581;VQSLOD=7.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,11:28:99:290,0,511
2	219144815	rs2045435	T	C	2144.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-9.440e+02;SOR=1.362;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2173,160,0
2	219144974	rs140036893	T	G	595.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=0.408;SB=-1.240e+02;SOR=0.634;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,19:39:99:624,0,546
2	219153982	rs34353396	T	C	234.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=-0.822;QD=10.67;ReadPosRankSum=0.198;SB=-1.765e+00;SOR=1.473;VQSLOD=2.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,10:22:99:263,0,385
2	219153983	rs10707182	GA	G	828.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;RPA=2,1;RU=A;SB=-3.876e+01;SOR=4.615;STR;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:21:60:866,60,0
2	219206919	rs3816562	C	T	216.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.775;SB=-2.701e+01;SOR=1.714;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:245,0,170
2	219209393	rs1350336	A	G	868.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-4.030e+02;SOR=1.136;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:897,66,0
2	219219072	rs4672888	C	T	224.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=0.114;SB=-1.205e+02;SOR=0.293;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:47:253,0,47
2	219221846	rs4324314	G	A	429.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-0.522;SB=-2.060e+02;SOR=0.452;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:458,0,536
2	219225162	rs4674296	T	C	715.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=0.00;SOR=6.091;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:744,57,0
2	219227756	rs6723716	T	C	527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.060;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=0.211;SB=-2.090e+02;SOR=0.458;VQSLOD=9.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,21:31:99:556,0,257
2	219229147	rs4674297	G	A	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=1.475;SB=-1.765e+00;SOR=0.784;VQSLOD=9.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:154,0,326
2	219229641	rs11696005	T	C	217.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.460;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=-1.616;SB=0.00;SOR=1.022;VQSLOD=10.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:246,0,164
2	219231807	rs3845833	C	T	2322.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-5.740e+02;SOR=2.704;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2351,181,0
2	219231826	.	G	A	828.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.201;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.07;ReadPosRankSum=0.775;SB=-1.830e+02;SOR=0.943;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:55:99:857,0,779
2	219231827	.	A	G	815.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.39;ReadPosRankSum=0.294;SB=-2.110e+02;SOR=0.843;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,28:53:99:844,0,740
2	219232354	rs7608923	C	A	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.498;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.419;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-0.018;SB=-8.800e+01;SOR=1.483;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:411,0,578
2	219249013	rs2276631	C	T	936.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.212;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.987;HaplotypeScore=2.4649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=1.095;SB=-4.640e+02;SOR=0.990;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,37:64:99:965,0,759
2	219250003	rs3731865	G	C	930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.051;SB=-6.360e+02;SOR=0.729;VQSLOD=9.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,38:67:99:959,0,739
2	219252377	rs2290708	C	T	590.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.096;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=4.773;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-0.621;SB=-8.000e+01;SOR=1.531;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,20:55:99:619,0,938
2	219254622	rs2695342	A	G	3672.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-2.314e+03;SOR=0.709;VQSLOD=4.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3701,277,0
2	219254842	rs3816560	T	C	459.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.666;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-1.044;SB=0.00;SOR=0.765;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:488,0,426
2	219254880	.	A	AT	219.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;RPA=1,2;RU=T;ReadPosRankSum=-0.450;SB=0.00;SOR=0.582;STR;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:257,0,286
2	219257688	rs2045433	T	C	732.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-4.510e+02;SOR=0.859;VQSLOD=4.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:761,54,0
2	219259270	rs2279015	G	A	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.343;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=4.323;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.312;SB=-2.501e+01;SOR=1.981;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:589,0,403
2	219263277	rs2695344	A	G	386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.06;SB=-4.176e+01;SOR=3.442;VQSLOD=5.44;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,11:11:30:415,30,0
2	219265094	rs2579958	T	C	649.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.07;SB=-4.800e+02;SOR=0.693;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:48:678,48,0
2	219265136	.	T	TC	940.73	PASS	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;RPA=1,2;RU=C;SB=-3.950e+02;SOR=1.085;STR;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:978,66,0
2	219266108	rs2607726	C	G	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.59;SB=-4.276e+01;SOR=3.442;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
2	219266204	rs2252235	T	C	556.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.394;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=1.647;SB=-9.700e+01;SOR=0.551;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:585,0,450
2	219266423	rs2227251	C	A	490.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.628;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.330;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-0.578;SB=-2.010e+02;SOR=0.236;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:519,0,591
2	219267781	rs2227255	C	T	578.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.687;HaplotypeScore=3.9817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-0.154;SB=-1.950e+02;SOR=1.195;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,22:47:99:607,0,623
2	219267913	rs2227258	A	G	1167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.062;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.801;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-0.638;SB=-6.400e+02;SOR=0.491;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,41:83:99:1196,0,1183
2	219268782	.	C	CA	62.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.85;RPA=14,15;RU=A;ReadPosRankSum=0.701;SB=-2.004e+01;SOR=0.307;STR;VQSLOD=7.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:24:99:100,0,262
2	219268803	rs2579959	G	A	498.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.293;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.276;SB=-6.800e+01;SOR=0.576;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:527,0,475
2	219288382	rs4672893	A	G	581.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.50;SB=-4.176e+01;SOR=4.174;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:610,45,0
2	219288899	rs3731866	C	T	836.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.87;SB=0.00;SOR=4.091;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:66:865,66,0
2	219294258	rs6720403	A	C	1767.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-1.065e+03;SOR=0.730;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1796,129,0
2	219296545	rs17572485	G	A	2071.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.18;SB=-9.770e+02;SOR=1.545;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2100,157,0
2	219299817	rs3217689	ACT	A	911.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;RPA=3,2;RU=CT;SB=-3.041e+02;SOR=1.609;STR;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:949,57,0
2	219319657	rs6436058	A	G	2219.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-1.064e+03;SOR=1.085;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2248,166,0
2	219320233	rs143712588	GAA	GA,G	529.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.943;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;MQ0=0;MQRankSum=0.464;QD=16.05;RPA=18,17,16;RU=A;ReadPosRankSum=-1.740;SB=-5.303e+01;SOR=1.501;STR;VQSLOD=2.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,16,13:35:99:567,165,178,239,0,383
2	219341827	rs72965147	A	G	412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=0.00;SOR=4.977;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:441,33,0
2	219350358	.	C	CA	97.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.431;POSITIVE_TRAIN_SITE;QD=8.14;RPA=24,25;RU=A;ReadPosRankSum=-0.253;SB=-2.877e+01;SOR=0.495;STR;VQSLOD=3.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,8:15:28:135,0,28
2	219423520	rs4674314	T	C	424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=0.00;SOR=4.977;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:453,33,0
2	219447912	rs2952825	A	G	481.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.15;SB=0.00;SOR=5.283;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:510,39,0
2	219457282	.	ATTTG	A	802.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DP=42;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.84;RPA=2,1;RU=TTTG;ReadPosRankSum=0.986;SB=-1.610e+02;SOR=1.206;STR;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,15:42:99:840,0,1413
2	219472734	rs3731867	G	A	2193.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-1.313e+03;SOR=0.722;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:70:99:2222,163,0
2	219508372	rs3770213	A	T	1953.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-9.300e+02;SOR=1.160;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1982,147,0
2	219513782	rs4674322	T	C	2518.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.193;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.29;ReadPosRankSum=-0.023;SB=-1.290e+03;SOR=0.268;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,77:78:99:2547,165,0
2	219515189	.	C	G	855.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.01;ReadPosRankSum=0.163;SB=-4.960e+02;SOR=0.793;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,34:57:99:884,0,582
2	219515241	.	G	C	954.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.18;ReadPosRankSum=0.185;SB=-5.280e+02;SOR=0.515;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,35:59:99:983,0,617
2	219525582	rs6722185	A	G	2050.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.08;SB=-7.270e+02;SOR=1.888;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2079,150,0
2	219527005	rs2303561	C	T	1412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-6.740e+02;SOR=1.230;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1441,108,0
2	219529348	rs2243911	C	T	2433.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-1.208e+03;SOR=1.150;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2462,181,0
2	219532903	rs2556384	C	T	2952.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-1.646e+03;SOR=0.829;VQSLOD=2.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2981,223,0
2	219532905	rs2556385	G	A	3011.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-1.745e+03;SOR=0.758;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3040,226,0
2	219538799	rs7604319	A	C	1008.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-3.270e+02;SOR=2.235;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1037,81,0
2	219541056	rs2556388	T	C	1118.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-2.441e+02;SOR=2.833;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:87:1147,87,0
2	219545309	rs2303565	T	C	4976.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-2.358e+03;SOR=1.309;VQSLOD=5.17;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,154:154:99:5005,367,0
2	219555262	rs1344642	G	A	2439.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-1.343e+03;SOR=0.976;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2468,178,0
2	219557738	rs2303566	G	A	363.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-4.076e+01;SOR=3.258;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:392,30,0
2	219562675	rs1863704	G	A	3029.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-1.823e+03;SOR=0.921;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3058,223,0
2	219602499	rs3731877	G	C	2510.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.93;SB=-9.870e+02;SOR=1.641;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2539,184,0
2	219602819	rs3731876	G	A	4063.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-2.178e+03;SOR=0.976;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4092,301,0
2	219605118	rs7562426	G	A	1139.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.36;SB=-2.890e+02;SOR=2.448;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:87:1168,87,0
2	219609776	rs2272191	G	A	1657.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-5.260e+02;SOR=2.093;VQSLOD=4.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1686,123,0
2	219609995	rs2272190	G	C	1230.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-1.603e+02;SOR=3.855;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1259,102,0
2	219610322	rs2272189	G	A	700.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-2.361e+02;SOR=2.030;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:729,54,0
2	219610433	rs586194	A	G	1926.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2374;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-7.310e+02;SOR=1.888;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1955,141,0
2	219612282	rs2272188	A	G	1790.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-6.500e+02;SOR=1.919;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1819,141,0
2	219618237	rs6436073	A	C	1407.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SB=-3.570e+02;SOR=2.531;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1436,105,0
2	219618497	rs6757772	T	G	665.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-1.065e+02;SOR=3.056;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:694,51,0
2	219618708	rs55900247	T	C	458.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.50;SB=0.00;SOR=5.136;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:487,36,0
2	219692527	.	G	GC	2546.73	PASS	AC=2;AF=1.00;AN=2;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.80;RPA=3,4;RU=C;SB=-7.350e+02;SOR=1.963;STR;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:67:99:2584,193,0
2	219692790	.	A	AG	2701.73	PASS	AC=2;AF=1.00;AN=2;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;RPA=3,4;RU=G;SB=-7.400e+02;SOR=2.139;STR;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:74:99:2739,208,0
2	219696014	rs650898	G	A	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-4.690e+02;SOR=0.922;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:28:63:867,63,0
2	219849840	rs3835980	AG	A	281.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.791;QD=20.12;RPA=6,5;RU=G;ReadPosRankSum=-0.283;SB=-3.876e+01;SOR=0.693;STR;VQSLOD=2.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,10:15:99:319,0,109
2	219888293	rs359978	G	A	327.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=0.873;SB=-2.110e+02;SOR=0.283;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:356,0,223
2	219903258	rs6736922	T	G	947.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.262;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.868;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=2.142;SB=-6.310e+02;SOR=0.753;VQSLOD=7.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:37,38:75:99:976,0,991
2	219903723	rs4674354	C	T	972.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=4.662;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.658;SB=-6.920e+02;SOR=0.307;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1001,0,979
2	219903787	rs4672910	T	C	742.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.412;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.544;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=0.051;SB=-2.390e+02;SOR=1.179;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,30:55:99:771,0,654
2	219906066	rs11674400	C	A	119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=-1.287;SB=0.00;SOR=0.260;VQSLOD=8.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:148,0,367
2	219920037	rs394452	A	G	2400.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;SB=-1.153e+03;SOR=1.085;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2429,181,0
2	219920412	rs3731881	A	G	483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.273;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-1.373;SB=-2.630e+02;SOR=0.657;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,17:37:99:512,0,600
2	219922073	.	G	GC	243.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;DP=29;ExcessHet=3.0103;FS=5.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.70;RPA=1,2;RU=C;ReadPosRankSum=1.781;SB=-2.657e-01;SOR=2.080;STR;VQSLOD=6.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,8:29:99:281,0,755
2	219923410	rs367872931	G	GAGA	1636.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;DB;DP=82;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.26;RPA=2,3;RU=AGA;ReadPosRankSum=-1.287;SB=-7.270e+02;SOR=0.808;STR;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,32:82:99:1674,0,2343
2	219941063	rs897477	G	A	1013.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.503;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=13.249;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=1.068;SB=-2.160e+02;SOR=2.021;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,38:97:99:1042,0,1647
2	220012576	rs7585742	G	C	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=6.543;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.907;SB=-2.004e+01;SOR=2.093;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,16:42:99:501,0,751
2	220022176	rs6436120	C	T	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.712;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-1.207;SB=-1.040e+02;SOR=0.112;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:362,0,535
2	220022435	rs2030452	G	C	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.709;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.408;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.07;ReadPosRankSum=0.015;SB=-5.000e+01;SOR=1.345;VQSLOD=6.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,14:40:99:304,0,756
2	220026369	rs6713887	G	T	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.709;SB=-9.732e-01;SOR=2.303;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:170,0,178
2	220028270	rs373333478	C	T	354.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.797;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.172;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.10;ReadPosRankSum=0.861;SB=-1.710e+02;SOR=0.976;VQSLOD=5.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,17:50:99:383,0,843
2	220028900	rs6753739	A	G	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.795;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=0.122;SB=-2.230e+02;SOR=0.695;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,18:40:99:444,0,618
2	220033830	rs3795986	A	G	819.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.494;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.972;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-2.310;SB=-3.920e+02;SOR=0.906;VQSLOD=7.29;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,31:63:99:848,0,897
2	220033956	rs6436121	T	C	808.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.275;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-1.218;SB=-4.600e+02;SOR=0.600;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,30:64:99:837,0,963
2	220037393	rs4674361	A	G	1357.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-7.880e+02;SOR=0.788;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1386,102,0
2	220037666	rs1127102	A	G	1270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=5.127;HaplotypeScore=2.6732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.406;SB=-6.580e+02;SOR=1.060;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,49:96:99:1299,0,1240
2	220037756	rs1043160	A	G	987.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.700;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=6.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.479;SB=-5.200e+02;SOR=0.236;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,35:72:99:1016,0,1070
2	220040330	rs1127101	A	G	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=2.347;SB=-2.820e+02;SOR=0.576;VQSLOD=8.31;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,20:50:99:452,0,827
2	220041091	rs6436123	G	A	556.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.911;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=8.572;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=1.218;SB=-1.503e+02;SOR=0.059;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:31:99:585,0,395
2	220046349	rs2272017	G	C	1214.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.412;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-0.364;SB=-6.180e+02;SOR=0.598;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,44:96:99:1243,0,1383
2	220046975	rs3731900	C	A	1418.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.567;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=2.581;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.414;SB=-6.610e+02;SOR=0.996;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,55:104:99:1447,0,1418
2	220047393	rs3731901	C	T	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.105;SB=-4.276e+01;SOR=0.160;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:164,0,166
2	220071803	rs6714820	C	G	541.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8620;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-2.411e+02;SOR=1.112;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:570,42,0
2	220071879	rs66491679	TG	T	351.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;RPA=9,8;RU=G;SB=-2.777e+01;SOR=3.611;STR;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:14:36:389,36,0
2	220072766	rs4674366	G	T	2294.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.00;SB=-4.750e+02;SOR=2.797;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:63:99:2323,175,0
2	220072852	rs4674367	C	T	392.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-1.121;SB=-1.070e+02;SOR=1.314;VQSLOD=7.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,14:40:99:421,0,753
2	220078496	rs2139823	T	C	1373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-8.170e+02;SOR=0.693;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1402,105,0
2	220083279	rs1109866	C	T	1806.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-1.100e+03;SOR=0.765;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1835,135,0
2	220083453	rs1109867	G	T	605.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-4.176e+01;SOR=4.294;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:634,48,0
2	220085845	rs2276633	A	G	2595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=-1.604e+03;SOR=0.738;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2624,196,0
2	220088248	rs908196	A	G	1248.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-6.600e+02;SOR=1.206;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1277,96,0
2	220089590	.	T	TG	3664.73	PASS	AC=2;AF=1.00;AN=2;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;RPA=4,5;RU=G;SB=-1.282e+03;SOR=1.514;STR;VQSLOD=4.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:108:99:3702,289,0
2	220089685	rs2276637	G	C	3447.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-1.880e+03;SOR=0.863;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3476,253,0
2	220099327	rs35447951	G	A	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.035;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.534;SB=-2.601e+01;SOR=2.215;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:276,0,234
2	220100787	rs2293079	C	T	768.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.205;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.842;SB=-2.280e+02;SOR=1.292;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,29:63:99:797,0,925
2	220108423	rs35328001	C	T	224.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.865;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.166;SB=-1.765e+00;SOR=1.302;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:253,0,378
2	220113242	rs7601549	T	G	1871.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.66;SB=-6.870e+02;SOR=1.697;VQSLOD=4.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1900,138,0
2	220113384	rs8447	G	A	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=0.449;SB=-1.765e+00;SOR=2.030;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:286,0,198
2	220118531	rs939574	G	C	522.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-3.610e+02;SOR=0.693;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:551,39,0
2	220134476	rs5838731	AG	A	300.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;RPA=5,4;RU=G;SB=-3.876e+01;SOR=3.056;STR;VQSLOD=6.88;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:10:27:338,27,0
2	220135208	rs2891733	C	T	1150.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.62;SB=-7.997e+01;SOR=4.615;VQSLOD=2.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1179,90,0
2	220136155	rs7594971	T	C	5595.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=2;POSITIVE_TRAIN_SITE;QD=31.44;SB=-2.562e+03;SOR=1.140;VQSLOD=5.36;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,178:178:99:5624,424,0
2	220136351	rs3731892	G	A	4356.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.67;SB=-1.143e+03;SOR=2.187;VQSLOD=4.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,120:120:99:4385,322,0
2	220136371	rs3731894	T	C	3347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-1.150e+03;SOR=1.921;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3376,265,0
2	220156146	rs1983297	G	A	759.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-0.238;SB=-4.470e+02;SOR=0.485;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,29:74:99:788,0,1194
2	220162015	rs17847406	C	G	873.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.751;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-0.961;SB=-4.960e+02;SOR=0.463;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,32:67:99:902,0,972
2	220162959	rs12105638	G	A	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.303;SB=-1.765e+00;SOR=1.911;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:177,0,135
2	220165763	rs2292606	T	C	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.675;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=0.945;SB=-1.030e+02;SOR=1.276;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,20:37:99:580,0,426
2	220168616	rs2271594	C	T	1477.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.779;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=9.720;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-1.183;SB=-4.080e+02;SOR=1.548;VQSLOD=4.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,53:109:99:1506,0,1633
2	220172576	rs7591986	A	C	767.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.094;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.997;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.615;SB=-4.530e+02;SOR=0.551;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,30:58:99:796,0,673
2	220172731	rs2292601	A	G	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.298;HaplotypeScore=4.3856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=0.190;SB=-2.004e+01;SOR=2.093;VQSLOD=6.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,10:31:99:325,0,524
2	220173905	rs57623838	C	T	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.3617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=2.391;SB=-1.710e+02;SOR=0.551;VQSLOD=7.51;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,19:30:99:483,0,210
2	220174056	rs6736979	T	C	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=6.818;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=1.335;SB=-1.390e+02;SOR=0.039;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:220,0,127
2	220194247	rs35419388	A	AATT	661.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.46;RPA=1,2;RU=ATT;ReadPosRankSum=1.808;SB=-3.190e+02;SOR=0.741;STR;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,13:35:99:699,0,1117
2	220195446	rs6707009	C	G	703.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.668;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.549;SB=-2.140e+02;SOR=0.976;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,26:44:99:732,0,501
2	220195738	rs34019246	GTCT	G	379.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=1.206;POSITIVE_TRAIN_SITE;QD=18.99;RPA=2,1;RU=TCT;ReadPosRankSum=-1.596;SB=-1.110e+02;SOR=0.495;STR;VQSLOD=3.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,9:21:99:417,0,591
2	220197321	rs2385405	C	T	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.61;ReadPosRankSum=1.518;SB=-5.600e+01;SOR=0.693;VQSLOD=8.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:99:118,0,360
2	220197388	rs2385404	C	A	121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.825;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.16;ReadPosRankSum=0.000;SB=-8.000e+01;SOR=0.330;VQSLOD=6.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:150,0,371
2	220197492	rs2385402	C	G	46.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.869;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.12;ReadPosRankSum=2.405;SB=-2.657e-01;SOR=1.781;VQSLOD=5.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:15:75:75,0,324
2	220197672	rs2385401	A	G	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.319;SB=-1.050e+02;SOR=0.697;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:99:154,0,101
2	220197730	rs2385400	G	C	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=1.738;SB=-6.700e+01;SOR=1.206;VQSLOD=7.29;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:174,0,129
2	220197821	rs5838736	CTA	C	455.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.81;RPA=8,7;RU=TA;ReadPosRankSum=1.304;SB=-7.400e+01;SOR=1.022;STR;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:493,0,336
2	220197929	rs138579161	CTTT	C	772.73	PASS	AC=1;AF=0.500;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.08;RPA=20,17;RU=T;SB=-4.050e+02;SOR=0.804;STR;VQSLOD=4.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,26:42:72:605,0,72
2	220239534	rs3731904	G	A	720.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SB=-8.297e+01;SOR=3.816;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:749,57,0
2	220239561	rs3731905	C	G	1081.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-1.185e+02;SOR=3.841;VQSLOD=4.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:81:1110,81,0
2	220246218	rs6436148	T	C	5410.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-3.283e+03;SOR=0.824;VQSLOD=4.43;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5439,394,0
2	220249299	.	C	CT	634.73	PASS	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.60;RPA=8,9;RU=T;SB=-3.377e+01;SOR=4.892;STR;VQSLOD=4.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:32:69:672,69,0
2	220249329	rs2002892	C	T	680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=0.00;SOR=5.892;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:709,54,0
2	220250147	rs907679	A	G	1393.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-6.600e+02;SOR=1.364;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1422,108,0
2	220250322	rs878437	C	A	3246.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.910;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=-1.015;SB=-2.082e+03;SOR=0.253;VQSLOD=2.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,110:111:99:3275,235,0
2	220250826	rs2271456	G	A	2000.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-5.760e+02;SOR=2.340;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2029,153,0
2	220250897	rs11352428	AG	A	1015.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;RPA=3,2;RU=G;SB=-4.340e+02;SOR=1.136;STR;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:26:75:1053,75,0
2	220251178	rs2271457	T	C	2128.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=-1.161e+03;SOR=1.209;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:75:99:2157,163,0
2	220251208	rs1040009	T	C	846.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.437;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.326;SB=-3.080e+02;SOR=0.843;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,31:59:99:875,0,713
2	220252287	rs138394024	CTCG	C	890.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.28;SB=-1.380e+02;SOR=2.985;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:928,42,0
2	220264412	rs13018645	A	G	839.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.127;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=0.953;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-1.979;SB=-5.490e+02;SOR=0.627;VQSLOD=3.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,32:59:99:868,0,729
2	220264543	rs33919520	C	CAT	5014.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SB=-2.437e+03;SOR=0.812;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,87:87:99:5052,262,0
2	220283826	rs907677	T	G	849.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-3.490e+02;SOR=1.528;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:878,63,0
2	220284779	rs12991025	C	T	525.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.254;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=0.356;SB=-6.500e+01;SOR=1.022;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,17:30:99:554,0,410
2	220285309	DES	C	T	1063.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.415;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.806;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.115;SB=-7.090e+02;SOR=0.566;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,44:87:99:1092,0,1193
2	220285666	DES	G	C	479.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.904;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=-0.387;SB=-2.110e+02;SOR=0.330;VQSLOD=8.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,20:49:99:508,0,887
2	220286142	DES	G	A	655.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.960;HaplotypeScore=3.3521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=-1.148;SB=-3.330e+02;SOR=0.941;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,25:67:99:684,0,1116
2	220306413	rs4674398	G	T	470.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-1.155e+02;SOR=2.448;VQSLOD=6.87;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:39:499,39,0
2	220308581	rs10932805	A	C	406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=0.00;SOR=4.977;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:435,33,0
2	220316579	rs4674399	C	T	1171.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-5.580e+02;SOR=1.501;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:87:1200,87,0
2	220330644	rs370532066	TGCGCGCGTGTGC	T	933.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;DB;DP=12;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=61.78;MQ0=0;MQRankSum=0.799;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=-0.325;SB=-2.490e+02;SOR=0.197;VQSLOD=0.222;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:971,0,320
2	220330661	.	A	G	399.77	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=46.3924;MLEAC=2;MLEAF=1.00;MQ=61.53;MQ0=0;QD=28.55;SB=-1.185e+02;SOR=2.303;VQSLOD=4.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:428,33,0
2	220330804	rs1567487	T	C	591.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-0.348;SB=-3.300e+02;SOR=0.614;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,24:56:99:620,0,795
2	220333950	rs10167209	T	C	3647.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.64;SB=-1.223e+03;SOR=1.632;VQSLOD=4.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3676,283,0
2	220345117	rs4674403	T	G	147.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.896;SB=0.00;SOR=0.551;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:176,0,164
2	220345118	rs4674404	T	C	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.896;SB=0.00;SOR=0.551;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:173,0,206
2	220346596	rs3731906	C	T	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=2.574;SB=0.00;SOR=0.223;VQSLOD=8.96;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,7:22:99:214,0,543
2	220348751	.	C	T	678.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;DP=49;Dels=0.00;ExcessHet=3.0103;FS=8.135;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.030;SB=-3.710e+02;SOR=0.611;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:707,0,659
2	220353013	rs875098	G	A	688.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.371;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-0.914;SB=-3.570e+02;SOR=0.971;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,26:51:99:717,0,715
2	220353104	rs875097	A	G	545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.732;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.670;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=1.830;SB=-1.860e+02;SOR=1.394;VQSLOD=7.27;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,20:47:99:574,0,881
2	220353440	rs62191888	G	T	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.207;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.494;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-0.667;SB=-2.580e+02;SOR=0.265;VQSLOD=7.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,20:47:99:490,0,832
2	220353532	rs13026308	C	A	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.818;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-0.794;SB=-3.380e+02;SOR=0.668;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,23:40:99:474,0,522
2	220354108	rs55760516	A	G	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=1.292;SB=-2.110e+02;SOR=0.481;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:35:99:417,0,570
2	220354365	rs56132883	C	T	597.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.179;SB=-3.410e+02;SOR=0.616;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,21:43:99:626,0,565
2	220354757	rs6742231	G	C	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=8.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=1.016;SB=-1.653e+02;SOR=0.048;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:343,0,266
2	220355529	rs12464085	A	G	592.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.143;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=0.702;SB=-3.130e+02;SOR=0.445;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,23:48:99:621,0,719
2	220356449	rs6747041	G	C	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.61;ReadPosRankSum=-1.463;SB=-9.200e+01;SOR=0.358;VQSLOD=6.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,9:29:99:191,0,560
2	220356520	rs12473286	G	T	499.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.013;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.075;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=0.615;SB=-2.440e+02;SOR=0.936;VQSLOD=7.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,21:55:99:528,0,767
2	220356806	rs907146	C	T	2683.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-1.698e+03;SOR=0.784;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2712,199,0
2	220357594	.	C	A	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.98;ReadPosRankSum=-0.456;SB=-4.076e+01;SOR=0.399;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:237,0,114
2	220358198	rs1050816	C	T	492.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.211;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=6.428;HaplotypeScore=2.1904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=0.163;SB=-1.611e+01;SOR=2.584;VQSLOD=6.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,21:52:99:521,0,904
2	220361265	rs2385541	A	G	758.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.10;SB=0.00;SOR=6.091;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:787,60,0
2	220361435	rs1567489	C	G	569.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SB=-4.176e+01;SOR=4.294;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:598,48,0
2	220361486	rs2010592	G	A	591.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.298;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=1.432;SB=-3.501e+01;SOR=0.818;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:620,0,461
2	220361520	rs16859986	C	G	1000.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.765;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=7.789;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=-1.658;SB=-2.540e+02;SOR=0.132;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,33:61:99:1029,0,899
2	220362283	rs2010528	C	G	1144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.944;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=9.435;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-1.782;SB=-3.110e+02;SOR=1.751;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,41:88:99:1173,0,1291
2	220362557	rs12474050	C	T	2392.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.276;DB;DP=175;Dels=0.00;ExcessHet=3.0103;FS=2.030;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-0.257;SB=-1.046e+03;SOR=0.446;VQSLOD=7.05;culprit=DP	GT:AD:DP:GQ:PL	0/1:83,92:175:99:2421,0,2194
2	220362899	rs2029251	C	G	7245.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=242;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.94;SB=-4.100e+03;SOR=1.100;VQSLOD=0.542;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,242:242:99:7274,524,0
2	220366953	rs2385539	G	C	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.293;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-0.190;SB=-1.765e+00;SOR=1.460;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:307,0,334
2	220371181	rs10932808	T	A	1109.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.46;SB=-5.140e+02;SOR=1.236;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1138,87,0
2	220379560	rs3731909	C	G	1348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=2.710;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.311;SB=-8.250e+02;SOR=0.422;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,51:97:99:1377,0,1184
2	220380125	rs1872858	G	A	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=0.695;SB=-3.000e+01;SOR=0.784;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:239,0,358
2	220397811	rs6731344	T	C	1105.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-8.297e+01;SOR=4.680;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1134,93,0
2	220397825	rs6716083	C	T	368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.853;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.347;SB=-1.765e+00;SOR=1.739;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:397,0,372
2	220400063	rs141949099	GT	G	248.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.707;DB;DP=30;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=1.600;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=-0.045;SB=-2.103e+01;SOR=1.911;VQSLOD=0.160;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:30:99:286,0,910
2	220401732	rs3770237	G	A	863.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.717;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.019;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=0.194;SB=-3.910e+02;SOR=0.470;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,35:77:99:892,0,1269
2	220401751	rs2385538	G	A	1142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.523;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.797;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-0.141;SB=-4.600e+02;SOR=0.957;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1171,0,1334
2	220402624	rs11689270	G	T	663.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.364;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.216;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=1.070;SB=-3.520e+02;SOR=0.451;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,21:41:99:692,0,619
2	220402665	rs6436153	C	A	420.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.853;HaplotypeScore=1.3302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=0.792;SB=-1.160e+02;SOR=1.501;VQSLOD=7.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,16:43:99:449,0,700
2	220402671	rs11689281	G	T	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.420;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.266;HaplotypeScore=1.9085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=-1.243;SB=-3.690e+02;SOR=0.385;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,25:41:99:718,0,441
2	220402680	rs11695248	T	C	583.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.237;HaplotypeScore=4.6272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-1.100;SB=-2.880e+02;SOR=0.504;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,24:40:99:612,0,351
2	220404381	rs1976616	A	G	1774.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-8.990e+02;SOR=0.997;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1803,135,0
2	220404648	rs1043833	C	T	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.063;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.312;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.541;SB=-1.210e+02;SOR=1.410;VQSLOD=7.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,14:30:99:327,0,580
2	220404726	rs1043832	G	A	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-2.194;SB=-1.950e+02;SOR=0.646;VQSLOD=8.35;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,13:33:99:327,0,593
2	220405230	rs6436154	G	A	652.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=0.618;SB=-3.730e+02;SOR=0.651;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,24:69:99:681,0,1249
2	220405321	rs6436155	T	C	1755.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=-9.480e+02;SOR=0.732;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1784,138,0
2	220406088	rs34272434	T	C	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=-0.660;SB=0.00;SOR=2.494;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:47:331,0,47
2	220406239	rs13004994	T	G	853.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.616;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=3.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-0.611;SB=-2.820e+02;SOR=1.134;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,33:80:99:882,0,1385
2	220406722	rs3731912	T	C	1214.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-7.400e+02;SOR=0.850;VQSLOD=3.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:90:1243,90,0
2	220409701	rs10932811	C	T	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.702;SB=-4.800e+01;SOR=1.140;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,8:19:99:251,0,291
2	220413661	rs12996466	C	T	973.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=-1.573e+02;SOR=3.258;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:1002,75,0
2	220414016	rs6436156	C	T	2525.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-7.950e+02;SOR=2.245;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2554,193,0
2	220414019	rs13023533	T	C	989.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.309;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.986;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.754;SB=-3.000e+02;SOR=0.892;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,37:76:99:1018,0,1013
2	220415646	rs1043582	T	C	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.815;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.04;ReadPosRankSum=-1.187;SB=-6.300e+01;SOR=0.313;VQSLOD=8.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:162,0,376
2	220416570	rs4672931	C	T	555.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.74;SB=-2.361e+02;SOR=1.244;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:584,45,0
2	220416591	rs4672932	C	T	618.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.08;SB=-3.120e+02;SOR=0.804;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:48:647,48,0
2	220416803	rs4672933	A	T	2003.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-1.246e+03;SOR=0.723;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2032,147,0
2	220416942	rs34490902	G	C	525.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.788;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.792;SB=-2.910e+02;SOR=0.368;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:554,0,555
2	220416967	rs4672934	C	T	404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.608;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.535;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.215;SB=-9.700e+01;SOR=1.207;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:433,0,508
2	220417228	rs60549465	G	T	233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-0.462;SB=-6.800e+01;SOR=0.425;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:262,0,340
2	220417266	rs59332477	C	T	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.79;ReadPosRankSum=1.108;SB=-5.600e+01;SOR=0.936;VQSLOD=8.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,9:29:99:254,0,528
2	220419236	rs10932813	T	C	1554.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-7.710e+02;SOR=1.007;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1583,120,0
2	220419339	rs10932814	T	C	1596.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-9.540e+02;SOR=0.813;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1625,123,0
2	220420956	rs10932816	A	G	1142.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-5.260e+02;SOR=1.061;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1171,87,0
2	220421417	rs1983210	C	G	5019.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-1.079e+03;SOR=2.916;VQSLOD=5.23;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,143:143:99:5048,373,0
2	220421456	rs1983211	C	A	1146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.439;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=0.831;SB=-2.010e+02;SOR=0.591;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,38:87:99:1175,0,1350
2	220422029	rs55873563	G	A	665.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.482;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.116;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=1.525;SB=-4.030e+02;SOR=0.480;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:694,0,607
2	220422279	.	G	A	868.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.10;ReadPosRankSum=-0.205;SB=-3.340e+02;SOR=0.616;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,31:48:99:897,0,429
2	220422774	rs2278201	A	G	887.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.820;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=-0.158;SB=-4.480e+02;SOR=0.743;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,34:81:99:916,0,1203
2	220423704	rs10208534	A	G	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.51;ReadPosRankSum=-0.424;SB=-4.800e+01;SOR=1.022;VQSLOD=8.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,7:25:99:191,0,439
2	220423769	rs67138719	C	G	241.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.687;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-0.659;SB=-8.900e+01;SOR=1.609;VQSLOD=6.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,10:26:99:270,0,537
2	220427996	rs11904583	T	C	285.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=0.00;SOR=4.804;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:314,24,0
2	220428381	rs2303543	A	T	2303.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.80;SB=-1.265e+03;SOR=1.096;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2332,172,0
2	220430203	rs1039898	C	T	2557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-1.133e+03;SOR=1.439;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2586,190,0
2	220431631	rs1043537	G	T	518.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.670;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-1.615;SB=-1.610e+02;SOR=1.012;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,19:43:99:547,0,674
2	220431910	.	C	T	311.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.450;HaplotypeScore=1.9465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.506;SB=-1.510e+02;SOR=0.409;VQSLOD=6.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,12:33:99:340,0,634
2	220431919	rs4674412	A	G	1251.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.48;SB=-4.830e+02;SOR=1.244;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:96:1280,96,0
2	220432014	rs61732787	G	A	647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.053;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.046;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.363;SB=-3.330e+02;SOR=0.525;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,25:56:99:676,0,932
2	220432709	rs2292360	A	T	1601.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-1.317;SB=-9.870e+02;SOR=0.822;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:70,66:136:99:1630,0,1780
2	220433113	rs12623922	T	C	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.576;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=-1.740;SB=-3.400e+01;SOR=1.445;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,9:14:99:296,0,124
2	220435034	rs10180675	A	G	4849.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-2.909e+03;SOR=0.790;VQSLOD=6.06;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4878,349,0
2	220435375	rs1061399	G	A	337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.777;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.000;SB=-1.280e+02;SOR=0.495;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:25:99:366,0,385
2	220439330	rs116399602	G	A	171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=5.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=0.094;SB=-1.080e+02;SOR=0.105;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:200,0,282
2	220462640	rs681747	G	T	2078.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-9.470e+02;SOR=1.197;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2107,157,0
2	220466199	rs620698	G	T	1877.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-7.380e+02;SOR=1.453;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1906,141,0
2	220466344	.	G	GT	1170.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=0.524;POSITIVE_TRAIN_SITE;QD=17.74;RPA=15,16;RU=T;ReadPosRankSum=0.947;SB=-4.230e+02;SOR=0.910;STR;VQSLOD=2.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,56:79:34:1140,0,34
2	220471116	rs633200	C	G	1145.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-5.710e+02;SOR=1.209;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1174,90,0
2	220476443	rs627530	C	T	3591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-2.022e+03;SOR=1.051;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3620,259,0
2	220476645	rs581547	T	C	2102.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-1.073e+03;SOR=0.976;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2131,166,0
2	220476832	rs200368727	C	T	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.155;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-1.122;SB=-9.800e+01;SOR=0.610;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:31:99:363,0,472
2	220479312	rs624773	T	C	4010.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-2.418e+03;SOR=1.038;VQSLOD=2.82;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4039,289,0
2	220480639	rs640807	T	C	1413.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-8.540e+02;SOR=0.829;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1442,108,0
2	220480693	rs665845	G	C	1546.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-8.780e+02;SOR=0.737;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1575,117,0
2	220500321	rs2305055	C	G	1589.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-8.210e+02;SOR=0.874;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1618,117,0
2	220500423	rs589767	A	G	1330.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.12;SB=-7.740e+02;SOR=0.743;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1359,99,0
2	220500426	rs639214	A	G	1257.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-6.280e+02;SOR=0.914;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:96:1286,96,0
2	220500830	rs35394392	G	C	580.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=-2.061e+02;SOR=1.473;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:609,45,0
2	220505421	rs72961491	C	T	1431.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9825;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-1.543e+02;SOR=4.174;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1460,117,0
2	220506522	rs2305054	G	A	794.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-2.001e+02;SOR=2.494;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:823,63,0
2	220771223	rs4674470	C	T	969.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.904;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.742;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=-0.546;SB=-5.090e+02;SOR=0.821;VQSLOD=6.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:74,40:114:99:998,0,2031
2	220771290	rs4674471	G	A	611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.983;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=4.715;HaplotypeScore=2.8658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.65;ReadPosRankSum=-0.442;SB=-3.600e+02;SOR=0.298;VQSLOD=6.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,26:92:99:640,0,2059
2	220771310	rs4674472	A	G	539.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=2.126;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.75;ReadPosRankSum=1.450;SB=-2.760e+02;SOR=0.432;VQSLOD=6.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,22:80:99:568,0,1656
2	220771378	rs4674473	A	G	630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.727;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=-0.464;SB=-4.120e+02;SOR=0.564;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,28:63:99:659,0,972
2	222290829	rs35860178	C	T	1532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.663;HaplotypeScore=2.7850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.528;SB=-8.220e+02;SOR=0.814;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:70,57:128:99:1561,0,1764
2	222290902	rs2303901	A	G	1123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.568;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.752;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.317;SB=-4.980e+02;SOR=0.511;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,42:93:99:1152,0,1330
2	222301357	rs3213844	T	C	1294.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-4.650e+02;SOR=1.900;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:96:1323,96,0
2	222301358	.	C	T	353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.288;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.84;ReadPosRankSum=0.993;SB=-9.400e+01;SOR=0.892;VQSLOD=6.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,14:40:99:382,0,743
2	222307310	rs2288629	C	A	633.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=0.00;SOR=5.784;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:662,51,0
2	222320427	rs2288627	G	A	2215.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-1.086e+03;SOR=1.288;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2244,163,0
2	222321225	rs6718949	C	T	2230.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-6.320e+02;SOR=2.439;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2259,166,0
2	222365938	rs2276627	T	C	352.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.681;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.004;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.020;SB=-8.600e+01;SOR=1.954;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,12:29:99:381,0,484
2	222365974	rs73089618	T	C	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.445;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.270;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-1.539;SB=-1.220e+02;SOR=1.445;VQSLOD=7.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,12:32:99:338,0,514
2	222367483	rs61623527	G	A	738.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-7.797e+01;SOR=3.816;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:767,57,0
2	222428332	rs11888889	G	A	208.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.695;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-1.959;SB=0.00;SOR=0.512;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:237,0,356
2	222428686	rs201666203	T	C	2015.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.441;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=2.038;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-1.776;SB=-9.240e+02;SOR=0.513;VQSLOD=4.98;culprit=DP	GT:AD:DP:GQ:PL	0/1:93,76:169:99:2044,0,2833
2	222431521	rs35574019	G	A	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.000;SB=0.00;SOR=0.859;VQSLOD=9.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:171,0,153
2	222431689	rs7589393	G	A	261.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=-0.253;POSITIVE_TRAIN_SITE;QD=26.19;ReadPosRankSum=-2.287;SB=-7.897e+01;SOR=0.473;VQSLOD=2.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:10:14:290,0,14
2	222437136	.	A	AG	491.73	PASS	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.14;RPA=1,2;RU=G;SB=0.00;SOR=5.136;STR;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:529,36,0
2	222827369	rs75694113	G	A	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.582;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.572;SB=-5.100e+01;SOR=1.022;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:325,0,418
2	223159119	rs2303948	C	A	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.752;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.98;ReadPosRankSum=0.123;SB=-9.732e-01;SOR=0.527;VQSLOD=9.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:99:118,0,288
2	223161624	rs12694578	A	G	110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.91;ReadPosRankSum=-0.502;SB=-7.300e+01;SOR=0.160;VQSLOD=7.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:14:99:139,0,237
2	223161889	rs12623857	A	G	1089.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-4.700e+02;SOR=1.371;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1118,81,0
2	223162024	rs6754024	T	G	910.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=-4.880e+02;SOR=0.765;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:939,69,0
2	223317212	rs12613007	G	A	102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=-1.829;SB=-6.200e+01;SOR=0.804;VQSLOD=8.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:99:131,0,249
2	223339533	rs200436592	CTT	C	252.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.875;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.98;RPA=17,15;RU=T;ReadPosRankSum=-1.922;SB=0.00;SOR=2.494;STR;VQSLOD=7.62;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:2,9:23:22:290,22,0
2	223423362	rs4674664	A	G	2095.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-1.144e+03;SOR=0.880;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2124,157,0
2	223436428	rs3211018	T	C	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.904;SB=-4.276e+01;SOR=0.132;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:171,0,238
2	223436607	rs7185	C	T	1735.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-9.750e+02;SOR=0.804;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1764,132,0
2	223489249	rs3214770	GT	G	536.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;DB;DP=41;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;RPA=3,2;RU=T;ReadPosRankSum=0.014;SB=-1.080e+02;SOR=0.252;STR;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:41:99:574,0,703
2	223489293	rs2290031	C	T	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=7.060;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=-1.334;SB=-1.970e+02;SOR=0.349;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:452,0,329
2	223493435	rs2019357	G	A	696.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.670;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.960;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-0.278;SB=-3.840e+02;SOR=0.846;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,26:62:99:725,0,952
2	223511751	rs11695525	T	C	963.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.220;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.171;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=-0.030;SB=-4.350e+02;SOR=0.465;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,31:50:99:992,0,510
2	223520905	rs2166652	G	C	1030.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.855;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-3.005;SB=-2.400e+02;SOR=0.647;VQSLOD=8.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:46,35:81:99:1059,0,1478
2	223520978	rs2044537	A	G	293.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.172;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=1.366;SB=-3.501e+01;SOR=0.350;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:322,0,553
2	223781018	.	T	A	534.77	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.42;SB=-1.115e+02;SOR=2.584;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:563,42,0
2	223785504	rs6739824	T	C	772.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.653e+02;SOR=2.636;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:801,60,0
2	223785846	rs6728234	G	A	1313.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-3.090e+02;SOR=2.368;VQSLOD=3.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1342,102,0
2	223787559	rs11891410	G	A	2583.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-1.440e+03;SOR=1.005;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2612,190,0
2	223787691	rs10932978	G	A	1263.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-5.940e+02;SOR=0.811;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1292,102,0
2	223798141	rs6726737	A	C	446.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=0.00;SOR=5.283;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:475,39,0
2	223799207	rs935030	C	T	730.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.80;SB=-4.076e+01;SOR=3.816;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:759,57,0
2	223805974	rs1014280	A	G	489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=0.00;SOR=5.283;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:518,39,0
2	223917289	rs71906281	T	TAAA	174.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.71;RPA=16,19;RU=A;ReadPosRankSum=2.312;SB=-8.200e+01;SOR=0.582;STR;VQSLOD=7.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,7:18:99:212,0,314
2	223917629	rs3795886	C	T	1015.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.306;SB=-5.080e+02;SOR=0.702;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,45:87:99:1044,0,1261
2	223917812	rs10201907	T	C	1556.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-3.550e+02;SOR=2.636;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1585,129,0
2	223917983	rs12621643	T	G	724.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.680;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-1.077;SB=-5.050e+02;SOR=0.588;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,30:64:99:753,0,856
2	223918080	rs10189762	C	G	1318.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-6.630e+02;SOR=1.105;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1347,99,0
2	224569899	rs1866246	C	T	838.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-2.800e+02;SOR=2.066;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:867,63,0
2	224569975	rs1866247	A	C	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-7.897e+01;SOR=2.494;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:410,30,0
2	224629876	.	C	CCATCAT	1491.73	PASS	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;RPA=7,9;RU=CAT;SB=-6.090e+02;SOR=1.292;STR;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:21:57:1529,57,0
2	224743591	rs602675	C	T	511.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.55;SB=-4.176e+01;SOR=3.912;VQSLOD=5.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:540,42,0
2	224744701	rs516849	A	G	939.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.051;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=0.056;SB=-3.580e+02;SOR=0.669;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,32:52:99:968,0,468
2	224758906	rs625150	C	T	3677.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-8.880e+02;SOR=2.453;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3706,271,0
2	224760494	rs597349	G	A	1030.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-4.750e+02;SOR=1.214;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1059,78,0
2	224760575	rs552854	A	G	417.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-4.276e+01;SOR=3.611;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:446,33,0
2	224763816	rs530065	C	T	1746.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-4.760e+02;SOR=2.522;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1775,135,0
2	224765755	rs5839028	TA	T	380.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.80;RPA=11,10;RU=A;SB=-1.103e+02;SOR=2.049;STR;VQSLOD=3.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:418,48,0
2	224765894	rs604990	G	A	2299.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-1.152e+03;SOR=1.349;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2328,169,0
2	224777094	rs541712	T	C	2328.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-5.230e+02;SOR=3.056;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2357,190,0
2	224777105	rs3841657	G	GTGAT	3824.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;RPA=1,2;RU=TGAT;SB=-2.523e+02;SOR=4.693;STR;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:67:99:3862,166,0
2	224842150	rs7597833	T	C	581.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-3.976e+01;SOR=4.174;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:610,45,0
2	224862700	rs36034130	C	A	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.172;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=-0.844;SB=-1.350e+02;SOR=0.905;VQSLOD=7.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,18:54:99:482,0,975
2	224862821	rs3795879	C	T	1818.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=3.549;HaplotypeScore=2.6640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=-1.599;SB=-1.079e+03;SOR=0.413;VQSLOD=7.92;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:46,67:114:99:1847,0,1205
2	224862842	rs12457	A	G	1943.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=2.241;HaplotypeScore=5.3259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.204;SB=-1.194e+03;SOR=0.495;VQSLOD=7.91;culprit=DP	GT:AD:DP:GQ:PL	0/1:58,75:134:99:1972,0,1542
2	224863090	rs10170379	C	T	938.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.947;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.268;SB=-7.100e+01;SOR=0.614;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,30:51:99:967,0,676
2	224866387	rs12138	G	A	1173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-1.177;SB=-3.240e+02;SOR=0.809;VQSLOD=9.43;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:44,44:88:99:1202,0,1250
2	224866576	rs12436	C	A	1425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.627;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=-0.128;SB=-4.270e+02;SOR=0.682;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,51:91:99:1454,0,1052
2	224866707	rs200798858	T	C	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.80;ReadPosRankSum=1.063;SB=-4.276e+01;SOR=0.223;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:169,0,156
2	225265645	rs13010329	G	A	421.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.43;ReadPosRankSum=-1.922;SB=0.00;SOR=1.863;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,13:18:99:450,0,152
2	225343208	rs3768896	G	A	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-1.260;SB=0.00;SOR=0.693;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:203,0,211
2	225346646	rs2070127	T	C	699.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.612;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.240;SB=-3.320e+02;SOR=0.223;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,25:45:99:728,0,551
2	225362478	rs3738952	C	T	2481.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.857;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=6.141;HaplotypeScore=5.1079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=1.228;SB=-1.301e+03;SOR=0.367;VQSLOD=6.63;culprit=DP	GT:AD:DP:GQ:PL	0/1:67,98:165:99:2510,0,1750
2	225364937	rs3768890	T	C	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=1.042;SB=0.00;SOR=1.127;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:429,0,248
2	225365056	rs3768889	A	G	1316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.861;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.809;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.284;SB=-4.310e+02;SOR=0.853;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,49:106:99:1345,0,1509
2	225367669	rs3754629	C	T	837.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.778;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-0.610;SB=-3.120e+02;SOR=0.704;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,30:54:99:866,0,645
2	225368321	rs3738951	A	G	121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.683;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.29;ReadPosRankSum=-1.613;SB=-2.601e+01;SOR=0.765;VQSLOD=8.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,6:23:99:150,0,472
2	225370554	rs1027340	C	A	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.100;SB=0.00;SOR=0.693;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:162,0,169
2	225376034	rs11686067	G	A	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.661;HaplotypeScore=2.8343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=-2.490;SB=-5.300e+01;SOR=1.347;VQSLOD=6.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,10:33:99:254,0,642
2	225630435	rs1045653	C	T	1932.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-9.390e+02;SOR=1.341;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1961,144,0
2	225665074	rs1560859	G	A	931.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-7.297e+01;SOR=4.332;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:960,75,0
2	225668717	rs141021252	ATG	A	347.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQ0=0;MQRankSum=1.146;POSITIVE_TRAIN_SITE;QD=12.42;RPA=16,15;RU=TG;ReadPosRankSum=0.161;SB=-9.000e+01;SOR=0.540;STR;VQSLOD=3.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,13:31:99:385,0,510
2	225688061	rs16866194	T	G	1593.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-8.197e+01;SOR=5.235;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1622,120,0
2	225719781	.	G	GAC	1436.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=0.957;POSITIVE_TRAIN_SITE;QD=26.98;RPA=18,19;RU=AC;ReadPosRankSum=-0.649;SB=-2.540e+02;SOR=0.420;STR;VQSLOD=3.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,31:60:49:837,0,49
2	225781669	rs12987341	G	A	557.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-7.797e+01;SOR=3.383;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:586,45,0
2	225781670	rs13013616	T	C	495.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-8.197e+01;SOR=3.258;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:524,42,0
2	225796458	rs35061287	ATC	A	648.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.48;RPA=2,1;RU=TC;SB=-5.576e+01;SOR=3.912;STR;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:15:42:686,42,0
2	225811581	rs13021295	T	A	781.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-3.150e+02;SOR=1.863;VQSLOD=5.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:29:60:810,60,0
2	225848579	rs375205	T	C	1283.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=2.866;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-0.729;SB=-8.290e+02;SOR=0.504;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,53:88:99:1312,0,806
2	225875158	rs590233	A	C	648.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.30;SB=-4.276e+01;SOR=4.407;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:677,51,0
2	226273490	rs2048935	T	C	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.418;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=0.297;SB=0.00;SOR=0.756;VQSLOD=10.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:560,0,498
2	226273689	rs2048936	T	C	1501.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.622;HaplotypeScore=4.3262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-0.380;SB=-8.360e+02;SOR=0.967;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,62:106:99:1530,0,1187
2	226447735	rs3828256	C	T	2027.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-6.090e+02;SOR=2.340;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2056,157,0
2	226447844	rs6436570	G	A	611.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.93;SB=0.00;SOR=5.670;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:640,48,0
2	226491770	rs3748993	A	C	2479.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-9.740e+02;SOR=1.765;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2508,184,0
2	226516429	rs3791734	A	G	830.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.39;SB=-8.297e+01;SOR=4.003;VQSLOD=4.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,23:23:63:859,63,0
2	227773354	rs375774716	G	GAC	478.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;RPA=6,7;RU=AC;SB=0.00;SOR=5.136;STR;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:516,36,0
2	227773466	rs3820928	T	C	2259.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-8.250e+02;SOR=1.745;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2288,166,0
2	227779191	rs3820927	C	A	3228.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-1.947e+03;SOR=0.808;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3256,238,0
2	227807202	rs6436641	G	T	1045.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.86;SB=-3.100e+02;SOR=2.019;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1074,78,0
2	227872182	rs2228557	G	A	3414.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-1.455e+03;SOR=1.436;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3443,253,0
2	227872995	rs2228555	T	C	1516.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-4.860e+02;SOR=1.981;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1545,111,0
2	227873028	rs13419076	A	G	1199.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-4.120e+02;SOR=2.133;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:90:1228,90,0
2	227874957	rs4423583	C	T	1856.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-6.750e+02;SOR=1.942;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1885,141,0
2	227877037	rs10188770	G	A	978.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.96;SB=-6.630e+02;SOR=0.749;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:72:1007,72,0
2	227886773	rs3752895	A	G	1425.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-7.970e+02;SOR=1.067;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1454,105,0
2	227886925	rs3752896	C	T	1423.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.11;SB=-7.000e+02;SOR=1.055;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1452,108,0
2	227892619	rs2228556	C	T	1518.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-8.700e+02;SOR=0.994;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1547,111,0
2	227892720	rs2229813	C	T	1377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.72;SB=-5.530e+02;SOR=1.387;VQSLOD=5.90;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1406,105,0
2	227895125	rs1917127	A	G	513.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-8.197e+01;SOR=2.584;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:542,39,0
2	227895175	.	T	C	438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.858;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.71;ReadPosRankSum=-1.379;SB=-1.350e+02;SOR=0.555;VQSLOD=7.94;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,17:32:99:467,0,480
2	227896652	rs13423714	C	G	1464.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.64;SB=-1.543e+02;SOR=4.021;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1493,108,0
2	227896886	rs2229812	C	T	4407.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-2.064e+03;SOR=1.373;VQSLOD=4.17;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4436,331,0
2	227896976	rs10203363	C	T	2454.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.70;SB=-4.130e+02;SOR=3.258;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2483,190,0
2	227897076	rs10179756	A	G	743.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-2.471e+02;SOR=1.931;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:772,57,0
2	227912331	rs2272200	G	A	1345.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-2.331e+02;SOR=3.003;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1374,102,0
2	227914655	rs2272203	C	G	270.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.08;SB=-1.603e+02;SOR=1.085;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:299,21,0
2	227914680	.	T	C	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.78;ReadPosRankSum=0.100;SB=-6.000e+01;SOR=0.693;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:146,0,108
2	227914975	rs2251223	T	G	340.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-4.276e+01;SOR=3.258;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:369,27,0
2	227915832	rs1800517	G	A	1682.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.59;SB=-1.152e+03;SOR=0.793;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1711,120,0
2	227920474	rs1320406	G	A	709.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=0.00;SOR=5.994;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:738,57,0
2	227921977	rs4536647	A	G	418.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-1.195e+02;SOR=2.147;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:447,33,0
2	227922015	rs4566357	A	G	516.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-1.533e+02;SOR=2.179;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:19:42:545,42,0
2	227922104	rs7567789	T	C	1191.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-5.610e+02;SOR=1.387;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1220,87,0
2	227922109	rs7567796	T	A	1200.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-6.130e+02;SOR=1.292;VQSLOD=6.21;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1229,90,0
2	227922454	rs2141829	G	A	565.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=0.00;SOR=5.549;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:594,45,0
2	227922470	rs2141828	T	C	458.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=0.00;SOR=5.136;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:487,36,0
2	227954599	rs2229814	G	A	1932.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-1.282e+03;SOR=0.754;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1961,141,0
2	227966148	rs16823202	C	T	852.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-1.423e+02;SOR=3.098;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:881,66,0
2	227966298	.	T	TA	1497.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.168;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=0.385;POSITIVE_TRAIN_SITE;QD=22.03;RPA=11,12;RU=A;ReadPosRankSum=-0.024;SB=-7.020e+02;SOR=1.061;STR;VQSLOD=3.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:6,62:77:79:1534,79,0
2	227967601	rs11274738	ACAATATTTCAGCAATAGGGAAAG	A	5944.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-7.803e+02;SOR=3.014;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:59:75:5982,75,0
2	227967830	rs10707643	GA	G	844.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.746;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.12;RPA=11,10;RU=A;ReadPosRankSum=1.747;SB=-3.223e+02;SOR=0.883;STR;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:3,37:41:31:882,31,0
2	227968553	rs7602059	A	C	1046.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-4.400e+02;SOR=1.352;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1075,78,0
2	227973095	rs7600536	A	T	396.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-8.097e+01;SOR=2.494;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:425,33,0
2	227973410	rs55741079	C	A	922.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-4.570e+02;SOR=0.922;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:951,72,0
2	227973623	rs12475686	A	G	1679.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.26;SB=-6.110e+02;SOR=1.659;VQSLOD=6.37;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1708,126,0
2	227974113	rs6436654	A	G	942.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-3.330e+02;SOR=1.839;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:69:971,69,0
2	227974191	rs6436655	A	G	463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.25;SB=-3.876e+01;SOR=3.767;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:492,36,0
2	228102723	rs13424243	G	C	2348.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-1.020e+03;SOR=1.426;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2377,184,0
2	228104760	rs7579991	C	T	1021.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-3.070e+02;SOR=2.165;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:78:1050,78,0
2	228109626	rs67073195	T	TG	1748.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.74;SB=-7.720e+02;SOR=0.968;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1786,117,0
2	228109784	rs6750210	C	T	503.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-1.543e+02;SOR=2.179;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:532,39,0
2	228111435	rs10178458	T	C	2168.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=-1.208e+03;SOR=0.927;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2197,163,0
2	228111600	rs10168566	G	T	930.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-1.205e+02;SOR=3.611;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:959,72,0
2	228111604	rs10168567	G	T	857.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-1.165e+02;SOR=3.528;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:886,69,0
2	228112186	rs4321358	A	G	2412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-1.272e+03;SOR=1.124;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2441,175,0
2	228113175	rs6436669	A	G	1208.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=-7.810e+02;SOR=0.836;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:87:1237,87,0
2	228118403	rs12621551	T	G	1523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-4.930e+02;SOR=2.110;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1552,114,0
2	228118508	rs13409219	G	A	445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=0.00;SOR=5.136;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:474,36,0
2	228124702	rs4332918	A	G	856.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-2.141e+02;SOR=2.124;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:885,69,0
2	228128540	rs10205042	C	T	1646.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-8.000e+02;SOR=1.067;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1675,123,0
2	228131912	rs10933174	C	A	767.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-2.331e+02;SOR=2.215;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:796,60,0
2	228135631	rs28381984	C	T	1312.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-5.670e+02;SOR=1.387;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1341,99,0
2	228144706	rs6729152	G	T	1798.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-7.910e+02;SOR=1.571;VQSLOD=5.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1827,135,0
2	228145543	rs6436671	C	T	1368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-5.500e+02;SOR=1.609;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1397,102,0
2	228146991	.	AAT	A	997.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.18;RPA=13,12;RU=AT;ReadPosRankSum=-1.483;SB=-1.520e+02;SOR=1.022;STR;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,29:36:12:796,0,12
2	228149107	rs6436672	A	G	390.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;SB=-1.393e+02;SOR=1.765;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:30:419,30,0
2	228158418	rs7569636	T	C	3144.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.94;SB=-6.920e+02;SOR=2.636;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3173,232,0
2	228158648	rs7608999	G	C	1349.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.24;SB=0.00;SOR=7.223;VQSLOD=3.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1378,102,0
2	228159063	rs6436675	T	C	895.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-4.290e+02;SOR=1.402;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:66:924,66,0
2	228159660	.	GT	G	339.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;DP=31;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.69;MQ0=0;MQRankSum=0.994;POSITIVE_TRAIN_SITE;QD=11.71;RPA=16,15;RU=T;ReadPosRankSum=-0.509;SB=-7.364e+01;SOR=1.508;STR;VQSLOD=0.320;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,22:31:94:377,0,94
2	228162641	rs55843236	C	T	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.475;SB=-2.330e+02;SOR=0.804;VQSLOD=9.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:453,0,449
2	228169632	rs11680670	C	T	1672.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-1.012e+03;SOR=0.693;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1701,126,0
2	228174175	rs34134749	TACAA	T	2749.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-4.670e+02;SOR=2.726;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:43:99:2787,123,0
2	228194480	rs3211097	A	T	2863.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.958;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.92;ReadPosRankSum=-0.737;SB=-9.370e+02;SOR=0.884;VQSLOD=3.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,86:87:99:2892,211,0
2	228194481	rs3211098	G	T	2886.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-1.062e+03;SOR=1.802;VQSLOD=7.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2915,214,0
2	228194570	rs6706656	G	A	3453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.85;SB=-1.949e+03;SOR=1.107;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3482,250,0
2	228194653	rs34828267	C	T	1686.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7331;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-3.090e+02;SOR=3.056;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1715,132,0
2	228197368	rs4500938	A	G	961.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-2.900e+02;SOR=2.093;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:990,72,0
2	228204929	rs4420693	C	T	705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-2.001e+02;SOR=2.303;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:734,54,0
2	228204982	rs4442987	C	T	1204.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-4.540e+02;SOR=1.730;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:90:1233,90,0
2	228207625	rs6738078	G	A	1105.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-2.391e+02;SOR=2.899;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1134,84,0
2	228228462	rs137891000	T	G	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.711;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.985;SB=-1.070e+02;SOR=0.256;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:296,0,323
2	228373404	.	A	AT	908.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.084;DP=61;ExcessHet=3.0103;FS=2.433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.32;RPA=13,14;RU=T;ReadPosRankSum=-1.483;SB=-2.180e+02;SOR=0.256;STR;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:6,41:61:10:945,10,0
2	228399480	rs7588620	T	C	2228.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-7.380e+02;SOR=1.965;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2257,169,0
2	228416712	rs13426457	A	G	2766.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.82;SB=-1.626e+03;SOR=0.969;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2795,211,0
2	228418433	.	A	G	1532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.093;DP=117;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=4.5466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.10;ReadPosRankSum=-0.137;SB=-8.720e+02;SOR=0.739;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,62:117:99:1561,0,1463
2	228476140	rs2176186	C	T	2891.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-1.743e+03;SOR=0.715;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2920,217,0
2	228476253	rs2138402	C	G	2368.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-1.179e+03;SOR=1.358;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2397,172,0
2	228493211	rs28739019	G	A	1474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-0.092;SB=-9.450e+02;SOR=0.728;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,57:101:99:1503,0,978
2	228513181	rs6436721	G	A	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=1.142;SB=-6.800e+01;SOR=1.085;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:216,0,171
2	228513189	.	A	G	72.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-1.290;SB=-2.801e+01;SOR=0.693;VQSLOD=7.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:101,0,189
2	228513217	rs6436722	C	T	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=1.440;SB=-3.500e+01;SOR=1.863;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:62:221,0,62
2	228560800	rs11334205	GA	G	1125.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.46;RPA=8,7;RU=A;SB=-2.830e+02;SOR=2.247;STR;VQSLOD=5.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:43:99:1163,123,0
2	228560834	.	C	CT	534.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;DP=33;ExcessHet=3.0103;FS=3.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.71;RPA=3,4;RU=T;ReadPosRankSum=-0.979;SB=-8.600e+01;SOR=1.708;STR;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,19:33:99:572,0,358
2	228734730	.	C	A	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-1.242;SB=0.00;SOR=0.412;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:121,0,217
2	228734836	rs12464933	T	A	356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.565;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.964;SB=-2.180e+02;SOR=0.342;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:385,0,371
2	228734956	rs12476836	G	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.632;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=0.505;SB=-1.290e+02;SOR=0.148;VQSLOD=7.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,9:23:99:235,0,405
2	228736313	rs12478068	G	T	717.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.900;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=-0.732;SB=-1.750e+02;SOR=0.527;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,24:37:99:746,0,317
2	228736527	rs12470042	A	G	833.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.136;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.250;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-1.234;SB=-2.990e+02;SOR=1.022;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,33:60:99:862,0,743
2	228736608	rs10933219	C	T	403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.270;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-0.375;SB=-3.301e+01;SOR=0.569;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:432,0,527
2	228741250	rs7571353	T	A	213.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.11;ReadPosRankSum=0.183;SB=-8.000e+01;SOR=0.693;VQSLOD=8.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,10:35:99:242,0,643
2	228750239	rs4973445	G	T	1703.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-5.150e+02;SOR=2.303;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1732,126,0
2	228756144	rs58627365	T	C	561.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.247;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=0.779;SB=0.00;SOR=1.302;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,17:27:99:590,0,300
2	228758456	rs35758334	C	A	794.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.834;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.444;SB=-2.640e+02;SOR=0.606;VQSLOD=8.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,30:66:99:823,0,1049
2	228758580	rs16824157	G	C	1128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=2.732;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-1.183;SB=-4.880e+02;SOR=1.079;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,46:101:99:1157,0,1292
2	228767631	rs2946931	G	T	386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=0.00;SOR=4.977;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:415,33,0
2	228776996	rs3748862	T	C	1883.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9572;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.05;SB=0.00;SOR=7.824;VQSLOD=1.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1912,147,0
2	228783410	rs16824212	G	T	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=1.083;SB=-5.150e-01;SOR=3.611;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:266,0,209
2	228783447	rs16824214	G	C	403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.768;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.049;SB=-9.300e+01;SOR=1.449;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:432,0,352
2	228788722	rs16824231	T	C	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.796;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=1.243;SB=-2.560e+02;SOR=1.436;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,25:59:99:690,0,835
2	228883029	rs3811515	A	C	4488.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.80;SB=-2.484e+03;SOR=0.806;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,129:129:99:4517,328,0
2	228883721	rs3811514	T	C	4201.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-2.252e+03;SOR=0.802;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4230,316,0
2	228886413	rs11292511	TG	T	3146.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;RPA=2,1;RU=G;SB=-1.421e+03;SOR=0.955;STR;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:76:99:3184,226,0
2	229035351	rs12618108	T	G	720.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.089;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.458;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-1.403;SB=-2.230e+02;SOR=1.126;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,27:56:99:749,0,726
2	229035427	rs11685283	T	C	414.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.077;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=9.108;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=0.381;SB=-9.732e-01;SOR=3.767;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:443,0,154
2	230020490	rs75373611	G	T	423.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.134;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.624;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-1.583;SB=-1.760e+02;SOR=0.126;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,15:25:99:452,0,308
2	230045542	rs75509687	C	G	369.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=23.11;SB=-2.001e+02;SOR=1.609;VQSLOD=2.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:30:398,30,0
2	230045545	rs78860008	T	C	378.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=23.67;SB=-1.851e+02;SOR=1.609;VQSLOD=2.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:30:407,30,0
2	230045554	rs62190427	G	C	380.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=23.80;SB=-1.851e+02;SOR=1.609;VQSLOD=2.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:30:409,30,0
2	230045564	rs62190428	T	C	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=23.86;SB=-1.841e+02;SOR=1.609;VQSLOD=3.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:30:410,30,0
2	230045568	rs62190429	T	C	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=23.61;SB=-1.851e+02;SOR=1.609;VQSLOD=2.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:30:406,30,0
2	230045615	rs62190430	G	A	270.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=27.08;SB=-1.433e+02;SOR=0.693;VQSLOD=4.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:299,24,0
2	230092723	rs1362242	G	A	1233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=1.796;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.148;SB=-7.120e+02;SOR=0.795;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,46:84:99:1262,0,936
2	230096837	rs6743582	C	T	575.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.065;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=3.808;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.733;SB=-1.440e+02;SOR=0.212;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,20:50:99:604,0,1005
2	230096893	rs55691132	A	T	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.025;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=0.000;SB=-3.876e+01;SOR=0.223;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:394,0,348
2	230135527	rs1227013	C	T	1287.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-4.180e+02;SOR=2.147;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:96:1316,96,0
2	230135711	.	G	GC	1899.73	PASS	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.05;RPA=1,2;RU=C;SB=-6.000e+02;SOR=1.775;STR;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1937,129,0
2	230231889	rs2302769	A	T	1042.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.076;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.091;SB=-3.050e+02;SOR=0.758;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,40:100:99:1071,0,1728
2	230271780	rs7562609	A	G	369.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=0.00;SOR=4.977;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:398,33,0
2	230282624	rs6760224	G	A	509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=0.00;SOR=5.421;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:538,42,0
2	230312499	rs2193899	T	C	522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.580;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.441;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.89;ReadPosRankSum=1.596;SB=-1.765e+00;SOR=3.383;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,15:21:99:551,0,169
2	230377392	rs6717730	T	C	827.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.281;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=-0.427;SB=-1.420e+02;SOR=0.223;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,28:44:99:856,0,483
2	230453214	.	G	GA	671.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.470;DP=32;ExcessHet=3.0103;FS=2.688;MLEAC=2;MLEAF=1.00;MQ=63.29;MQ0=0;MQRankSum=1.161;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.88;RPA=10,11;RU=A;ReadPosRankSum=2.131;SB=-2.650e+02;SOR=0.278;STR;VQSLOD=0.010;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,25:32:45:709,45,0
2	230655733	rs722268	C	T	485.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=0.00;SOR=5.283;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:514,39,0
2	230666898	rs10432554	A	G	648.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-1.941e+02;SOR=2.200;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:677,48,0
2	230668968	rs4972915	G	A	1841.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-6.880e+02;SOR=1.733;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1870,141,0
2	230841074	rs499449	C	T	224.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.42;ReadPosRankSum=-0.853;SB=-1.070e+02;SOR=1.192;VQSLOD=7.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,11:35:99:253,0,688
2	230914766	rs6748654	T	C	1081.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-8.297e+01;SOR=4.479;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:81:1110,81,0
2	231025545	rs1549574	T	G	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.122;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.000;SB=0.00;SOR=0.399;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:198,0,314
2	231035359	rs115347862	C	T	980.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.099;SB=-6.130e+02;SOR=0.641;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,38:74:99:1009,0,987
2	231050569	rs2114591	G	A	74.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.34;ReadPosRankSum=-0.071;SB=0.00;SOR=0.188;VQSLOD=9.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:103,0,327
2	231050715	rs3948464	A	G	2749.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-1.352e+03;SOR=1.364;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2778,211,0
2	231072709	rs1365776	C	T	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.11;ReadPosRankSum=1.762;SB=-1.610e+02;SOR=0.527;VQSLOD=8.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,14:42:99:327,0,741
2	231076289	rs3820974	T	G	726.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.500;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.243;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=1.974;SB=-2.400e+02;SOR=1.112;VQSLOD=7.91;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,26:46:99:755,0,497
2	231077360	rs6749386	A	G	940.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.84;SB=-4.810e+02;SOR=0.922;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:969,72,0
2	231077725	rs1129411	A	G	925.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-5.410e+02;SOR=0.693;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:954,72,0
2	231077868	rs7601176	A	G	422.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.18;SB=-1.483e+02;SOR=1.911;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:451,33,0
2	231077890	rs112889751	A	G	173.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.386;SB=-1.767e+00;SOR=1.863;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:202,0,193
2	231081384	rs7580900	T	C	602.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=0.00;SOR=5.670;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:631,48,0
2	231081405	rs7580912	T	C	879.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=-6.797e+01;SOR=4.091;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:908,69,0
2	231103185	rs2278197	A	G	1444.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.40;SB=-2.780e+02;SOR=3.056;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1473,108,0
2	231106244	rs2288328	G	C	1202.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-4.470e+02;SOR=1.923;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:90:1231,90,0
2	231113910	rs3813466	T	C	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-4.276e+01;SOR=3.611;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:399,33,0
2	231118186	rs3769840	G	A	2354.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-1.344e+03;SOR=0.887;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2383,178,0
2	231120042	.	C	T	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.633;DP=20;Dels=0.00;ExcessHet=3.0103;FS=8.038;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.59;ReadPosRankSum=-0.837;SB=-2.103e+01;SOR=2.765;VQSLOD=5.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:280,0,255
2	231120255	rs55829350	CG	C	265.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;RPA=10,9;RU=G;SB=-3.577e+01;SOR=3.056;STR;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:11:27:303,27,0
2	231149108	rs4972946	G	A	568.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.85;SB=-3.930e+02;SOR=0.874;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:42:597,42,0
2	231157527	rs6739193	G	A	874.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=0.00;SOR=6.439;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:903,72,0
2	231162341	rs13405136	G	T	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-3.477e+01;SOR=3.442;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:399,30,0
2	231223975	rs11678791	C	T	395.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=0.00;SOR=4.977;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:424,33,0
2	231248261	rs28497362	C	T	500.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-2.750e+02;SOR=1.061;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:529,39,0
2	231258150	rs7590429	C	T	1149.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-6.630e+02;SOR=0.804;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1178,87,0
2	231314680	rs76203360	G	C	218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=-0.074;SB=-4.276e+01;SOR=0.293;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:247,0,169
2	231326081	rs35506327	T	C	936.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=1.770;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-0.611;SB=-4.770e+02;SOR=0.935;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,40:86:99:965,0,1294
2	231327291	rs1649863	A	G	1913.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.786;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=1.383;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-0.085;SB=-8.330e+02;SOR=0.878;VQSLOD=7.86;culprit=DP	GT:AD:DP:GQ:PL	0/1:72,69:141:99:1942,0,1854
2	231331701	.	A	AG	510.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;DP=40;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=1.251;POSITIVE_TRAIN_SITE;QD=13.10;RPA=2,3;RU=G;ReadPosRankSum=-0.357;SB=-1.700e+02;SOR=1.022;STR;VQSLOD=0.106;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,16:40:99:548,0,876
2	231331799	rs1649869	T	C	988.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.730;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.817;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.416;SB=-2.470e+02;SOR=1.395;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,34:81:99:1017,0,1235
2	231331896	rs1050224	G	A	1585.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=1.303;SB=-7.960e+02;SOR=0.652;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:76,58:134:99:1614,0,2073
2	231337960	rs1615190	C	T	496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.759;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=0.596;SB=-2.840e+02;SOR=0.685;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,21:40:99:525,0,468
2	231363252	rs34979917	TA	T	107.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DB;DP=13;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;RPA=13,12;RU=A;ReadPosRankSum=-0.361;SB=-5.197e+01;SOR=0.148;STR;VQSLOD=7.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,7:13:83:145,0,83
2	231406492	.	AG	A	233.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.75;RPA=6,5;RU=G;ReadPosRankSum=-0.234;SB=0.00;SOR=0.804;STR;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:271,0,248
2	231406680	rs836237	T	C	1193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=3.943;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-0.703;SB=-7.290e+02;SOR=0.548;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,46:91:99:1222,0,1297
2	231406846	rs10199013	G	A	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.490;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=1.119;SB=-1.769e+00;SOR=0.954;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,11:30:99:323,0,647
2	231407342	rs10199349	C	A	297.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=2.043;SB=-1.765e+00;SOR=1.765;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:326,0,343
2	231407372	rs864460	T	C	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.124;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=1.061;SB=-6.200e+01;SOR=0.693;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:453,0,477
2	231407519	rs6717269	C	T	709.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.876;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=0.674;SB=-3.730e+02;SOR=0.653;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,26:74:99:738,0,1333
2	231407663	rs9288668	C	T	915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.852;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.621;SB=-5.490e+02;SOR=0.636;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,35:80:99:944,0,1268
2	231407863	.	G	GA	406.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.34;RPA=1,2;RU=A;ReadPosRankSum=0.533;SB=-5.076e+01;SOR=0.264;STR;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:444,0,326
2	231438198	rs56007290	C	T	368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.471;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.129;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.608;SB=-1.750e+02;SOR=0.184;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:397,0,305
2	231438296	rs17276229	A	G	399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-0.906;SB=-2.410e+02;SOR=0.754;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,16:28:99:428,0,337
2	231438347	rs17276271	C	T	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.923;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.409;SB=-1.080e+02;SOR=0.446;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:276,0,247
2	231438388	rs62192834	G	A	205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.771;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-0.000;SB=-3.677e+01;SOR=0.223;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:234,0,238
2	231438421	rs62192835	T	C	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=-0.437;SB=0.00;SOR=0.859;VQSLOD=10.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:213,0,160
2	231683487	rs16836174	CTT	C	502.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=1.556;SB=0.00;SOR=1.765;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:15:99:540,0,177
2	231738168	rs2289235	G	A	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.745;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=2.205;SB=-1.440e+02;SOR=0.264;VQSLOD=7.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,14:32:99:369,0,563
2	231738263	rs2289234	C	T	622.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.104;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.017;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=0.346;SB=-3.970e+02;SOR=0.502;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,25:58:99:651,0,904
2	231738269	rs2289233	G	A	616.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=3.642;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=0.475;SB=-3.870e+02;SOR=0.501;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,25:57:99:645,0,835
2	231738318	rs3816150	T	C	611.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.417;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.662;SB=-3.840e+02;SOR=0.345;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,24:53:99:640,0,754
2	231738466	rs6436977	A	C	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=1.033;SB=0.00;SOR=1.022;VQSLOD=9.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:248,0,155
2	231740276	rs2289231	A	G	110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.03;ReadPosRankSum=0.862;SB=-1.766e+00;SOR=0.404;VQSLOD=9.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,5:22:99:139,0,559
2	231742711	rs60237566	T	G	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.828;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.533;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.281;SB=-2.100e+02;SOR=0.711;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,16:41:99:482,0,592
2	231774862	.	C	G	835.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.196;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.618;SB=-4.690e+02;SOR=0.732;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,34:86:99:864,0,1501
2	231775297	rs1992186	T	G	1547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.797;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=2.205;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-0.553;SB=-8.570e+02;SOR=0.485;VQSLOD=7.46;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,59:140:99:1576,0,2227
2	231860838	rs2271369	C	T	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=0.141;SB=-6.800e+01;SOR=0.283;VQSLOD=9.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:132,0,224
2	231860848	rs6722863	A	G	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.83;ReadPosRankSum=0.141;SB=-7.000e+01;SOR=0.283;VQSLOD=9.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:130,0,219
2	231864289	rs2136474	A	C	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.888;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.981;SB=-3.400e+01;SOR=0.593;VQSLOD=10.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:282,0,276
2	231864529	rs6436986	A	G	860.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.731;SB=-5.440e+02;SOR=0.668;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,36:68:99:889,0,896
2	231864600	rs7573039	T	C	590.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.493;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.795;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=0.465;SB=-2.430e+02;SOR=1.210;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,21:39:99:619,0,501
2	231865018	rs13406394	A	G	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.312;SB=-3.500e+01;SOR=0.412;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:164,0,238
2	231865047	rs3817173	T	C	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.473;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-0.381;SB=-6.200e+01;SOR=0.211;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:264,0,362
2	231865090	rs2271376	T	C	359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.354;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=0.890;SB=-2.120e+02;SOR=0.532;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:388,0,535
2	231865269	rs2271375	G	T	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.917;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.414;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=0.977;SB=-1.180e+02;SOR=0.982;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:378,0,470
2	231867220	rs10933364	A	G	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.307;SB=0.00;SOR=0.693;VQSLOD=10.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:186,0,204
2	231867578	rs2271372	G	C	482.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.309;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.99;ReadPosRankSum=0.373;SB=-4.276e+01;SOR=0.569;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:511,0,210
2	231905855	rs2052625	C	A	704.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=1.660;SB=-1.230e+02;SOR=0.461;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,25:50:99:733,0,713
2	231943505	.	C	CT	129.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=0.049;QD=5.90;RPA=24,25;RU=T;ReadPosRankSum=0.131;SB=0.00;SOR=0.693;STR;VQSLOD=1.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,11:38:99:167,0,122
2	231944373	rs2303353	A	T	1501.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-5.510e+02;SOR=1.814;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1530,114,0
2	231947432	rs2007131	C	A	520.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.64;SB=0.00;SOR=5.421;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:549,42,0
2	231947758	rs371456617	ATG	A	975.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;DB;DP=56;ExcessHet=3.0103;FS=8.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.07;ReadPosRankSum=0.840;SB=-2.657e-01;SOR=2.964;VQSLOD=4.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,23:56:99:1013,0,1519
2	231948178	rs906879	A	G	431.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=0.00;SOR=5.136;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:460,36,0
2	231949946	rs2303357	G	A	2415.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-5.260e+02;SOR=2.743;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2444,184,0
2	232030555	rs2303350	G	A	77.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.57;ReadPosRankSum=0.510;SB=0.00;SOR=0.465;VQSLOD=9.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,4:17:99:106,0,446
2	232030861	rs2303349	A	G	653.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.210;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=0.037;SB=-4.276e+01;SOR=0.412;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,20:33:99:682,0,369
2	232035429	rs6749	G	A	1328.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.520;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=2.662;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.252;SB=-6.520e+02;SOR=1.133;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,52:100:99:1357,0,1303
2	232087474	rs1626450	A	G	1143.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-2.471e+02;SOR=2.899;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1172,87,0
2	232087475	rs1626451	T	A	1131.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-2.401e+02;SOR=2.899;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1160,87,0
2	232135541	rs7604042	A	T	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.568;SB=-1.540e+02;SOR=0.694;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:27:99:327,0,454
2	232153195	rs77340623	C	T	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-0.178;SB=-1.750e+02;SOR=0.126;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:353,0,484
2	232196472	rs1729082	T	A	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.652;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=0.197;SB=-5.300e+01;SOR=1.267;VQSLOD=7.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,14:38:99:371,0,719
2	232196564	rs1669083	C	T	888.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.637;SB=-4.160e+02;SOR=0.781;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,34:76:99:917,0,1197
2	232196597	rs1669084	G	A	880.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.645;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=1.842;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=2.437;SB=-5.180e+02;SOR=0.509;VQSLOD=7.36;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:47,32:79:99:909,0,1208
2	232225535	.	C	CG	2863.73	PASS	AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;RPA=3,4;RU=G;SB=-1.426e+03;SOR=0.749;STR;VQSLOD=4.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:75:99:2901,217,0
2	232263127	rs2290130	G	A	1199.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=5.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-0.822;SB=-6.380e+02;SOR=0.336;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,44:95:99:1228,0,1446
2	232317402	rs11295750	CA	C	2813.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;RPA=2,1;RU=A;SB=-1.188e+03;SOR=1.162;STR;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:66:99:2851,196,0
2	232320856	.	G	GA	1827.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.023;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.49;RPA=9,10;RU=A;ReadPosRankSum=0.235;SB=-6.290e+02;SOR=0.414;STR;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,67:80:99:1865,152,0
2	232321956	rs7598759	C	T	608.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=1.147;SB=-3.040e+02;SOR=0.593;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,22:58:99:637,0,1044
2	232326417	rs1131171	C	T	627.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.205;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-1.258;SB=-2.570e+02;SOR=1.054;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:44:99:656,0,561
2	232326801	rs2595514	A	T	1192.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-3.470e+02;SOR=2.419;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1221,93,0
2	232326873	rs147456242	TTC	T	413.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;DB;DP=20;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=1.006;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.99;ReadPosRankSum=-0.889;SB=-9.297e+01;SOR=0.105;VQSLOD=0.114;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:20:99:451,0,389
2	232378231	rs6750795	T	C	1049.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-4.950e+02;SOR=1.418;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1078,78,0
2	232389744	rs3752762	A	G	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.221;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=8.427;HaplotypeScore=1.9985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=1.077;SB=-1.630e+02;SOR=1.608;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:431,0,344
2	232390151	rs3752763	A	G	779.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.637;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=8.945;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-0.057;SB=-2.913e+02;SOR=0.079;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,29:46:99:808,0,493
2	232458443	rs10933378	T	C	1152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=2.725;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.521;SB=-4.000e+02;SOR=1.070;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,43:106:99:1181,0,1873
2	232663646	rs138197524	A	G	757.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.575;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.237;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-0.195;SB=-5.170e+02;SOR=0.278;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,30:49:99:786,0,539
2	232879671	rs723044	C	T	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.978;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=0.010;SB=-2.430e+02;SOR=0.632;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,20:51:99:490,0,939
2	232952143	rs35104431	CT	C	327.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.30;RPA=12,11;RU=T;ReadPosRankSum=1.394;SB=-4.303e+01;SOR=0.723;STR;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,18:30:99:365,0,236
2	233199107	rs75782436	C	T	1547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.802;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=2.103;HaplotypeScore=14.5186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=-1.471;SB=-8.320e+02;SOR=0.516;VQSLOD=6.15;culprit=DP	GT:AD:DP:GQ:PL	0/1:94,62:159:99:1576,0,2411
2	233201443	rs113002914	A	G	299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.710;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-1.602;SB=-1.060e+02;SOR=0.804;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:328,0,307
2	233243660	rs2014448	T	C	1295.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-4.030e+02;SOR=2.073;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1324,99,0
2	233243981	rs13026692	A	T	1125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.865;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=14.776;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-1.328;SB=-4.100e+02;SOR=1.109;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,40:90:99:1154,0,1458
2	233244586	rs2853374	C	G	909.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-1.801e+02;SOR=2.670;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:938,72,0
2	233245090	rs2260307	A	G	835.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=29.85;SB=-4.610e+02;SOR=0.836;VQSLOD=3.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:864,66,0
2	233245141	rs2260309	T	C	1165.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-5.400e+02;SOR=1.179;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1194,93,0
2	233251366	rs12328730	C	T	1428.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-8.420e+02;SOR=0.909;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1457,105,0
2	233282847	rs13002718	C	G	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=-1.189;SB=-2.801e+01;SOR=1.911;VQSLOD=6.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,6:13:99:138,0,181
2	233306836	rs790027	A	G	1594.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-8.850e+02;SOR=1.036;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1623,117,0
2	233306896	rs790028	A	G	1169.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.564;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.449;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.24;ReadPosRankSum=1.557;SB=-4.291e+02;SOR=1.308;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,39:40:53:1198,53,0
2	233307002	rs790029	T	A	544.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.79;SB=-4.176e+01;SOR=4.047;VQSLOD=6.60;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,15:15:45:573,45,0
2	233310058	rs790043	C	T	589.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-2.401e+02;SOR=1.179;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:19:45:618,45,0
2	233310149	rs790044	A	G	844.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=-4.330e+02;SOR=1.179;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:873,66,0
2	233311776	rs57258596	G	T	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=-1.102;SB=-6.700e+01;SOR=1.329;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:141,0,174
2	233311824	rs7568055	A	T	262.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.28;ReadPosRankSum=-1.645;SB=-1.653e+02;SOR=0.307;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,9:10:21:291,21,0
2	233322424	rs2246004	T	C	555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=-0.650;SB=-3.440e+02;SOR=0.612;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,22:36:99:584,0,392
2	233323177	rs2003780	T	C	3950.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1571;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-2.348e+03;SOR=0.859;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3979,286,0
2	233323205	rs2741269	C	T	1506.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.213;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=1.390;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.014;SB=-9.250e+02;SOR=0.568;VQSLOD=7.19;culprit=DP	GT:AD:DP:GQ:PL	0/1:68,61:129:99:1535,0,1812
2	233323525	rs2678480	G	A	1318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.902;SB=-6.900e+02;SOR=0.784;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,44:88:99:1347,0,1329
2	233344991	rs2741279	T	G	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.316;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.110;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=1.635;SB=-1.610e+02;SOR=1.421;VQSLOD=7.28;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,17:35:99:534,0,487
2	233346027	rs746379	C	G	348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.497;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=1.504;SB=-1.440e+02;SOR=1.033;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:377,0,104
2	233346047	rs58166918	C	G	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.77;ReadPosRankSum=-1.870;SB=-2.501e+01;SOR=0.631;VQSLOD=8.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:81:81,0,363
2	233346662	rs909432	A	C	1031.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-2.760e+02;SOR=2.448;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:78:1060,78,0
2	233348005	rs2742077	G	T	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.520;HaplotypeScore=6.9015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-0.066;SB=-1.190e+02;SOR=1.288;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,12:29:99:360,0,505
2	233348647	rs2241755	G	A	669.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.754;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.219;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=1.720;SB=-2.200e+02;SOR=1.247;VQSLOD=7.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,27:73:99:698,0,1258
2	233349588	rs1529874	G	A	2230.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-1.335e+03;SOR=0.720;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2259,172,0
2	233350548	rs113660447	G	A	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=0.000;SB=-9.600e+01;SOR=0.375;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:273,0,328
2	233385202	rs2741294	C	T	285.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.575;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=0.693;SB=-2.302e+01;SOR=2.030;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:314,0,262
2	233385396	rs1550094	G	A	669.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.511;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.772;HaplotypeScore=4.9548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.058;SB=-3.580e+02;SOR=0.201;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,27:47:99:698,0,549
2	233386229	rs2853444	T	C	763.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-3.190e+02;SOR=1.697;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:792,57,0
2	233386432	rs11902035	G	A	258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=-0.446;SB=-1.020e+02;SOR=0.569;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:287,0,116
2	233388813	rs2741299	T	G	563.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-2.890e+02;SOR=0.693;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:592,45,0
2	233389167	rs58091792	G	C	340.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.231;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=1.415;SB=-2.901e+01;SOR=1.609;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:369,0,413
2	233389918	rs2853447	A	G	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=-0.044;SB=-3.300e+02;SOR=0.859;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,22:31:99:615,0,148
2	233391463	rs2278478	A	G	296.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.635;SB=-1.070e+02;SOR=0.346;VQSLOD=9.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:325,0,204
2	233392020	rs34885768	A	AAAAG	222.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;MQ0=0;MQRankSum=1.304;QD=12.85;ReadPosRankSum=-0.413;SB=-6.100e+01;SOR=1.179;VQSLOD=2.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:260,0,318
2	233400074	rs2767	A	G	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=1.264;SB=-1.550e+02;SOR=0.593;VQSLOD=9.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:282,0,369
2	233404334	rs72057846	C	CGGGCTGGCT	500.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.748;QD=15.17;RPA=2,3;RU=GGGCTGGCT;ReadPosRankSum=-1.831;SB=-1.070e+02;SOR=1.179;STR;VQSLOD=2.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:12:99:538,0,647
2	233404590	rs12996322	G	C	294.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=0.257;SB=-4.276e+01;SOR=0.275;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:323,0,235
2	233406998	rs1881492	T	G	810.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=0.00;SOR=6.184;VQSLOD=8.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:839,63,0
2	233408190	rs60960955	A	AC,ACCCC	692.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.10;RPA=8,9,12;RU=C;SB=-2.890e+02;SOR=1.179;STR;VQSLOD=4.84;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,12,6:20:99:730,290,238,428,0,582
2	233408220	rs10714586	AG	A	749.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;RPA=7,6;RU=G;SB=-2.890e+02;SOR=1.329;STR;VQSLOD=6.74;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,22:25:66:787,66,0
2	233408239	rs2573206	C	G	808.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-3.460e+02;SOR=1.358;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:837,63,0
2	233408283	rs13018423	C	T	1050.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-6.340e+02;SOR=0.927;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:37:78:1079,78,0
2	233415978	rs11899983	T	C	1536.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.959;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.694;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.663;SB=-8.680e+02;SOR=0.775;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,60:115:99:1565,0,1250
2	233421284	rs3830645	CT	C	447.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;RPA=4,3;RU=T;SB=-2.121e+02;SOR=0.976;STR;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:485,42,0
2	233429144	rs72497300	GTATTT	G	987.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;RPA=7,6;RU=TATTT;SB=-1.955e+02;SOR=2.584;STR;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:38:48:1025,48,0
2	233445899	.	T	TG	241.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.11;RPA=7,8;RU=G;ReadPosRankSum=-0.412;SB=-3.876e+01;SOR=0.275;STR;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:19:99:279,0,192
2	233502984	rs13029754	A	G	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=0.716;SB=-2.240e+02;SOR=0.674;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,23:59:99:563,0,1048
2	233599904	rs11555646	A	C	1836.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-7.340e+02;SOR=1.688;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1865,135,0
2	233612557	rs3817311	C	T	435.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=0.00;SOR=5.136;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:464,36,0
2	233620907	.	C	CT	104.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;MQRankSum=0.157;QD=13.12;RPA=20,21;RU=T;ReadPosRankSum=0.489;SB=-6.351e+01;SOR=0.330;STR;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,7:10:13:142,13,0
2	233633460	rs1801251	G	A	2299.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-1.371e+03;SOR=0.774;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2328,172,0
2	233641083	rs737027	G	C	2077.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-7.900e+02;SOR=1.758;VQSLOD=5.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2106,154,0
2	233757697	rs895432	A	G	2905.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-1.610e+03;SOR=0.780;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2934,217,0
2	233785015	rs778354	G	A	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.980;SB=-1.380e+02;SOR=2.129;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,17:22:99:482,0,111
2	233791608	rs1878289	C	G	99.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.24;ReadPosRankSum=0.850;SB=-2.901e+01;SOR=0.804;VQSLOD=9.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:128,0,304
2	233791648	rs2592127	G	T	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.249;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-1.301;SB=-1.250e+02;SOR=0.593;VQSLOD=9.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,12:28:99:336,0,442
2	233834975	rs4973588	A	G	1547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-4.830e+02;SOR=2.256;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1576,123,0
2	233880271	rs60652209	A	G	447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-0.251;SB=-1.770e+02;SOR=0.551;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,17:30:99:476,0,268
2	233880508	rs62193981	A	G	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.340;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-0.058;SB=-1.820e+02;SOR=0.250;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:288,0,353
2	233899126	rs2233391	C	A	1375.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.774;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.676;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.458;SB=-7.660e+02;SOR=0.610;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,55:122:99:1404,0,2061
2	233925491	rs4246649	A	G	2986.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-8.180e+02;SOR=2.174;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3015,223,0
2	233944310	rs4315512	C	T	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.459;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=-0.151;SB=-1.765e+00;SOR=0.963;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:186,0,325
2	233990412	rs55913569	C	T	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.373;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=13.519;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=1.406;SB=-1.603e+02;SOR=0.021;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:430,0,611
2	233990594	rs61752227	A	G	1180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-0.850;SB=-6.720e+02;SOR=0.693;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,44:97:99:1209,0,1459
2	233997595	.	AT	A	127.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;DP=44;ExcessHet=3.0103;FS=7.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.56;RPA=21,20;RU=T;ReadPosRankSum=0.873;SB=-4.621e+01;SOR=0.094;STR;VQSLOD=6.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,14:44:99:165,0,169
2	233998646	rs6738961	C	T	1039.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=6.180;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=-1.102;SB=-3.420e+02;SOR=1.470;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,41:80:99:1068,0,992
2	234053816	rs144181925	T	C	1362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.595;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.735;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.446;SB=-6.590e+02;SOR=0.573;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,54:116:99:1391,0,1604
2	234054237	rs140053128	T	G	982.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.487;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-0.053;SB=-5.020e+02;SOR=1.138;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,38:65:99:1011,0,723
2	234054873	rs1135173	G	A	1569.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-0.964;SB=-9.860e+02;SOR=0.661;VQSLOD=7.34;culprit=DP	GT:AD:DP:GQ:PL	0/1:63,63:126:99:1598,0,1575
2	234054989	rs36180605	T	G	734.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=1.617;SB=-1.990e+02;SOR=1.338;VQSLOD=7.29;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,29:65:99:763,0,1167
2	234055004	rs36189208	T	C	615.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.262;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=8.754;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=1.647;SB=-1.120e+02;SOR=2.135;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,24:55:99:644,0,903
2	234066741	rs36142198	A	C	163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.582;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=1.780;SB=-1.765e+00;SOR=0.859;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,6:18:99:192,0,379
2	234066969	rs36127492	C	G	649.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=8.481;HaplotypeScore=2.5750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=0.076;SB=-3.330e+02;SOR=0.872;VQSLOD=6.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,27:72:99:678,0,1221
2	234067017	rs148118779	A	G	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.300;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=9.903;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=-0.798;SB=-3.220e+02;SOR=0.441;VQSLOD=6.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,24:58:99:552,0,1048
2	234067089	rs36165346	A	G	508.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.635;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=1.519;SB=-1.820e+02;SOR=0.416;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:537,0,397
2	234070171	rs28605534	G	C	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-2.493;SB=0.00;SOR=0.473;VQSLOD=8.92;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:198,0,245
2	234070190	rs28609111	G	A	115.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.661;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.72;ReadPosRankSum=-0.982;SB=-1.765e+00;SOR=1.230;VQSLOD=8.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:144,0,316
2	234070233	rs28576692	T	C	468.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.131;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.222;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=1.919;SB=-2.901e+01;SOR=1.721;VQSLOD=6.66;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,15:31:99:497,0,458
2	234070587	rs28751960	A	T	69.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.81;ReadPosRankSum=1.074;SB=-3.200e+01;SOR=0.551;VQSLOD=8.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:98:98,0,223
2	234072626	rs141642539	T	C	950.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.96;SB=-1.603e+02;SOR=3.258;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:78:979,78,0
2	234073243	rs6715810	C	T	284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.024;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=-1.107;SB=-8.097e+01;SOR=0.223;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:313,0,162
2	234078056	rs11386687	AC	A	1136.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;DB;DP=68;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=0.264;SB=-5.750e+02;SOR=0.667;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,29:68:99:1174,0,1549
2	234078088	.	G	A	836.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.431;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.037;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.18;ReadPosRankSum=-0.076;SB=-3.530e+02;SOR=0.984;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,32:59:99:865,0,670
2	234078582	rs10754947	G	A	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.187;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.584;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-0.580;SB=-1.240e+02;SOR=0.240;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,19:46:99:529,0,750
2	234091158	rs4571051	T	C	2235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;DB;DP=192;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.254;SB=-1.346e+03;SOR=0.689;VQSLOD=6.40;culprit=DP	GT:AD:DP:GQ:PL	0/1:104,88:192:99:2264,0,2693
2	234102738	rs11681058	G	T	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.026;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.490;SB=-3.100e+01;SOR=1.022;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:231,0,287
2	234103862	rs375428598	G	GA	270.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.02;ReadPosRankSum=1.110;SB=-1.020e+02;SOR=0.627;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,9:30:99:308,0,941
2	234103863	rs62192895	C	G	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.59;ReadPosRankSum=1.110;SB=-9.400e+01;SOR=0.627;VQSLOD=7.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:30:99:226,0,608
2	234107070	rs7569827	G	A	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=1.011;SB=-2.000e+02;SOR=0.660;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:35:99:378,0,539
2	234112649	rs7609436	T	C	1781.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.032;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.20;ReadPosRankSum=-1.645;SB=-8.780e+02;SOR=0.399;VQSLOD=4.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1810,101,0
2	234113396	rs377336965	T	TTG	293.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;DB;DP=13;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.59;RPA=6,7;RU=TG;ReadPosRankSum=-0.638;SB=-9.297e+01;SOR=0.141;STR;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:331,0,177
2	234178453	rs12994971	C	T	359.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=0.00;SOR=4.804;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:388,30,0
2	234178624	.	C	CT	194.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DP=51;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.33;RPA=15,16;RU=T;ReadPosRankSum=-0.977;SB=-9.200e+01;SOR=0.586;STR;VQSLOD=6.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,13:51:99:232,0,552
2	234181593	rs2289475	G	C	1681.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-1.014e+03;SOR=0.770;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1710,123,0
2	234182240	rs2289472	C	T	591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.29;SB=0.00;SOR=5.670;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:620,48,0
2	234183368	rs2241880	A	G	2146.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-1.150e+03;SOR=1.131;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2175,157,0
2	234183468	rs2241879	G	A	1992.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-1.029e+03;SOR=0.925;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2021,150,0
2	234184417	rs3792109	G	A	4371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-2.580e+03;SOR=1.002;VQSLOD=5.96;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4400,316,0
2	234185999	rs3816234	G	A	366.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=0.00;SOR=4.804;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:395,30,0
2	234186489	rs2241877	A	G	407.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.30;SB=0.00;SOR=4.977;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:436,33,0
2	234197717	rs4663136	C	G	637.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=0.00;SOR=5.784;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:666,51,0
2	234227523	rs2304777	A	G	1635.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-9.580e+02;SOR=0.730;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1664,123,0
2	234227693	rs2304776	C	T	650.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-8.097e+01;SOR=3.500;VQSLOD=5.83;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:51:679,51,0
2	234235749	rs2304774	G	C	2873.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-1.548e+03;SOR=1.061;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2902,211,0
2	234238254	rs745498	T	G	2291.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=-1.386e+03;SOR=0.779;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2320,166,0
2	234247627	rs2241874	T	C	749.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=0.00;SOR=5.994;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:778,57,0
2	234255547	rs1046974	G	A	1671.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=-1.052e+03;SOR=0.726;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1700,123,0
2	234294561	rs5839482	T	TTC	1839.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=1.026;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-0.073;SB=-8.680e+02;SOR=0.693;VQSLOD=3.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,38:78:99:1877,0,1734
2	234294791	rs838716	G	C	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.603;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=1.859;SB=-8.500e+01;SOR=1.262;VQSLOD=7.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,12:28:99:296,0,448
2	234368715	.	TA	T	116.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.24;RPA=14,13;RU=A;ReadPosRankSum=-0.520;SB=-1.905e+01;SOR=0.567;STR;VQSLOD=6.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,12:38:99:154,0,541
2	234372767	rs2924811	T	C	714.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.272;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=1.038;SB=-2.290e+02;SOR=0.502;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,27:42:99:743,0,373
2	234372985	rs2242098	A	C	287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.124;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.234;SB=-6.600e+01;SOR=0.693;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:316,0,351
2	234386018	rs2971862	A	G	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.773;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.18;ReadPosRankSum=0.327;SB=-3.400e+01;SOR=0.124;VQSLOD=6.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:99:121,0,341
2	234386134	rs2971863	A	G	520.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=0.541;SB=-2.650e+02;SOR=0.656;VQSLOD=9.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,23:58:99:549,0,976
2	234394329	rs1470864	C	A	1180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.025;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=1.337;SB=-5.470e+02;SOR=0.511;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1209,0,964
2	234394487	rs1048603	G	A	989.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.161;SB=-5.230e+02;SOR=0.675;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1018,0,1017
2	234394569	rs2603547	A	G	489.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.960;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-0.407;SB=-1.120e+02;SOR=1.259;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,18:42:99:518,0,612
2	234396542	rs2167885	G	A	519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=12.349;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-0.288;SB=-1.460e+02;SOR=1.911;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,19:41:99:548,0,626
2	234398195	.	G	GA	331.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;DP=29;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.29;RPA=10,11;RU=A;ReadPosRankSum=1.196;SB=-1.400e+02;SOR=1.112;STR;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:29:99:369,0,236
2	234405374	rs2602386	A	C	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.391;SB=-8.100e+01;SOR=1.051;VQSLOD=8.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:347,0,425
2	234407160	rs2603546	C	T	877.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.149;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.272;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=0.627;SB=-3.030e+02;SOR=0.495;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,32:50:99:906,0,473
2	234429739	rs59586144	T	TTTC	1245.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.91;RPA=1,2;RU=TTC;ReadPosRankSum=-0.398;SB=-6.180e+02;SOR=0.693;STR;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:53:99:1283,0,1263
2	234432017	rs838543	A	G	1706.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.646;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=3.045;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.680;SB=-7.590e+02;SOR=0.970;VQSLOD=7.70;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,63:143:99:1735,0,2120
2	234433124	rs838549	G	A	809.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.878;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.756;SB=-3.350e+02;SOR=0.693;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,31:65:99:838,0,940
2	234438246	.	C	CT	1712.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210;DP=74;ExcessHet=3.0103;FS=6.771;MLEAC=1;MLEAF=0.500;MQ=60.15;MQ0=0;MQRankSum=0.853;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.15;RPA=1,2;RU=T;ReadPosRankSum=-1.008;SB=-7.110e+02;SOR=0.238;STR;VQSLOD=0.174;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,44:74:99:1750,0,1101
2	234438354	rs12692193	C	T	371.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=0.145;SB=-4.276e+01;SOR=0.420;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:400,0,264
2	234442437	rs11332355	CA	C	445.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=0.645;POSITIVE_TRAIN_SITE;QD=15.37;RPA=11,10;RU=A;ReadPosRankSum=-0.026;SB=-5.497e+01;SOR=0.569;STR;VQSLOD=3.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,22:33:99:483,0,101
2	234449316	rs2167884	G	A	737.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.475;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.203;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-0.105;SB=-4.340e+02;SOR=1.015;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,32:57:99:766,0,743
2	234449462	rs1545525	T	C	245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.359;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-0.188;SB=0.00;SOR=0.593;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:274,0,308
2	234457900	rs3965793	T	A	727.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=0.199;SB=-1.370e+02;SOR=0.755;VQSLOD=8.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,26:40:99:756,0,368
2	234469664	rs6753062	T	C	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.749;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-0.771;SB=-6.700e+01;SOR=0.582;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:203,0,323
2	234512976	rs2269352	T	C	914.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-3.990e+02;SOR=0.997;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:943,69,0
2	234526871	rs1042597	C	G	3765.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-1.201e+03;SOR=2.066;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3794,280,0
2	234527397	rs13027376	G	A	465.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.78;SB=0.00;SOR=5.136;VQSLOD=8.40;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,12:12:36:494,36,0
2	234545830	.	A	G	2322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.129;DP=185;Dels=0.00;ExcessHet=3.0103;FS=1.826;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-0.441;SB=-1.105e+03;SOR=0.860;VQSLOD=5.15;culprit=DP	GT:AD:DP:GQ:PL	0/1:100,85:185:99:2351,0,2874
2	234627937	rs2011404	T	C	7234.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=240;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.14;SB=-4.421e+03;SOR=0.701;VQSLOD=0.790;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,240:240:99:7263,536,0
2	234688036	rs6431631	C	A	648.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-2.750e+02;SOR=1.402;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:677,51,0
2	234698097	rs12468017	T	C	542.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.112;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.820;SB=-2.240e+02;SOR=1.043;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,20:47:99:571,0,615
2	234702212	rs6738710	G	C	911.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.168;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.115;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=-0.543;SB=-2.350e+02;SOR=0.256;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,33:60:99:940,0,776
2	234702459	rs1500481	T	C	1429.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.635;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-1.023;SB=-5.150e+02;SOR=0.382;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,54:108:99:1458,0,1549
2	234702905	rs10169532	C	T	114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.204;SB=-8.097e+01;SOR=0.105;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:143,0,134
2	234703136	rs6431634	T	C	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=-0.346;SB=-2.640e+02;SOR=0.560;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,18:44:99:474,0,651
2	234704150	rs2885297	T	C	1767.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-7.690e+02;SOR=1.421;VQSLOD=3.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1796,132,0
2	234704318	rs2361503	A	G	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.049;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.092;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.47;ReadPosRankSum=1.273;SB=-2.140e+02;SOR=0.522;VQSLOD=7.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,18:61:99:545,0,1204
2	234704495	rs11563248	T	G	699.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.870;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.517;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.284;SB=-3.580e+02;SOR=0.243;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,23:45:99:728,0,675
2	234704607	rs1076454	C	T	778.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.540;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.177;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.447;SB=-4.320e+02;SOR=0.812;VQSLOD=8.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,29:59:99:807,0,823
2	234704690	rs759173	T	C	1844.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-8.990e+02;SOR=1.199;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1873,144,0
2	234704746	rs759172	G	C	1673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.54;SB=-8.970e+02;SOR=0.780;VQSLOD=4.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1702,123,0
2	234707341	rs1500479	T	C	958.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.17;SB=-1.473e+02;SOR=3.180;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:987,72,0
2	234708428	rs13013882	G	A	1820.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-4.660e+02;SOR=2.644;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1849,141,0
2	234708570	rs11563069	G	A	2848.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-1.583e+03;SOR=0.935;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2877,214,0
2	234708629	rs13018934	G	A	2645.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-1.262e+03;SOR=1.079;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2674,199,0
2	234708720	rs2041652	T	G	2376.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-1.275e+03;SOR=0.874;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2405,175,0
2	234712921	rs10175949	G	A	2176.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.40;SB=-6.690e+02;SOR=1.692;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2205,169,0
2	234713812	rs2041651	G	T	3809.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-1.574e+03;SOR=1.402;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3838,283,0
2	234717498	rs12053058	G	C	505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.78;SB=0.00;SOR=5.283;VQSLOD=8.62;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,13:13:39:534,39,0
2	234717516	rs12053059	G	A	531.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-7.197e+01;SOR=3.258;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:560,42,0
2	234717669	rs10803663	A	G	1386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.82;SB=-5.110e+02;SOR=1.666;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1415,111,0
2	234720734	rs988344	A	C	412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-1.185e+02;SOR=2.147;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:441,36,0
2	234725502	rs726016	T	C	3795.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=-2.408e+03;SOR=0.873;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3824,283,0
2	234727250	rs719419	T	G	1360.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-6.390e+02;SOR=1.464;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1389,105,0
2	234727478	rs6759919	A	G	764.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-3.876e+01;SOR=4.712;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:793,60,0
2	234727986	rs6754859	C	T	2968.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-1.504e+03;SOR=1.109;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2997,223,0
2	234728078	rs1500480	T	C	3111.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-1.460e+03;SOR=1.384;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3140,229,0
2	234738175	rs502059	A	G	884.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-8.197e+01;SOR=4.174;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:913,69,0
2	234738472	rs582432	G	A	1972.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-6.360e+02;SOR=2.119;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2001,147,0
2	234740758	rs213547	A	G	416.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=66.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=-4.276e+01;SOR=3.611;VQSLOD=4.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:445,33,0
2	234740798	.	T	A	659.77	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=70.00;MQ0=0;QD=34.72;SB=-2.001e+02;SOR=1.981;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:688,51,0
2	234740798	rs66922086	T	TAAAA	1354.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=70.00;MQ0=0;QD=32.24;SB=-3.411e+02;SOR=1.981;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:1392,57,0
2	234740985	rs474242	G	A	1578.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-8.240e+02;SOR=1.136;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1607,114,0
2	234740987	rs658482	C	G	1558.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-7.130e+02;SOR=1.345;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1587,114,0
2	234741022	.	T	C	1196.77	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=30.9940;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.24;SB=-4.020e+02;SOR=1.949;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1225,96,0
2	234741028	rs33951293	A	AG	1508.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-4.950e+02;SOR=1.751;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1546,99,0
2	234741443	rs213548	G	A	773.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-7.997e+01;SOR=3.912;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:60:802,60,0
2	234749151	rs213555	C	T	1745.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.92;SB=-1.185e+02;SOR=4.977;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1774,141,0
2	234750831	rs3806589	T	C	4540.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5907;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-2.538e+03;SOR=0.952;VQSLOD=6.12;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,145:146:99:4569,349,0
2	234752638	rs7583713	C	T	360.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=0.00;SOR=4.804;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:389,30,0
2	234835170	rs11563220	C	T	3014.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-1.472e+03;SOR=1.352;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3043,223,0
2	234835440	rs11563219	T	C	808.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-1.981e+02;SOR=2.494;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:837,63,0
2	234846198	rs1019103	G	A	570.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-4.176e+01;SOR=4.174;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:599,45,0
2	234847506	rs10432393	C	A	717.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.592;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=31.5454;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=-0.039;SB=-2.031e+02;SOR=1.127;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,30:32:34:746,34,0
2	234856212	rs28901644	C	T	1339.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-6.450e+02;SOR=1.127;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1368,99,0
2	234858801	rs11563217	G	A	424.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.08;SB=0.00;SOR=4.977;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:453,33,0
2	234863788	rs7593557	G	A	2757.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-1.551e+03;SOR=0.780;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2786,205,0
2	234873436	rs28902176	G	T	1748.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-3.670e+02;SOR=2.925;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1777,132,0
2	234878261	rs6760498	G	A	204.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.150;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-1.059;SB=0.00;SOR=0.307;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:233,0,444
2	234878774	rs1548690	T	C	1141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.218;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=3.686;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-0.306;SB=-1.760e+02;SOR=1.333;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,41:92:99:1170,0,1472
2	234888643	rs6745987	T	C	322.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=-0.434;SB=0.00;SOR=1.244;VQSLOD=10.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:351,0,199
2	234888721	rs6736916	C	T	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-0.281;SB=-1.700e+02;SOR=0.770;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:35:99:490,0,450
2	234890391	rs6708995	G	T	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.732;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=6.226;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-0.390;SB=-5.150e-01;SOR=2.683;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:345,0,496
2	234890793	rs4663993	C	T	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.866;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.69;ReadPosRankSum=0.527;SB=0.00;SOR=0.193;VQSLOD=9.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:142,0,437
2	234967539	rs593668	T	A	3492.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-2.281e+03;SOR=0.693;VQSLOD=5.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3521,256,0
2	235950187	rs1469375	T	C	3053.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.299;DB;DP=210;Dels=0.00;ExcessHet=3.0103;FS=1.110;HaplotypeScore=4.2368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.890;SB=-1.458e+03;SOR=0.835;VQSLOD=6.15;culprit=DP	GT:AD:DP:GQ:PL	0/1:94,116:210:99:3082,0,2842
2	235951819	rs3795962	A	G	916.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.909;HaplotypeScore=2.8270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-0.085;SB=-5.600e+02;SOR=0.486;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,36:75:99:945,0,1059
2	235961953	rs28403580	G	A	788.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.955;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=2.018;HaplotypeScore=3.8403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-1.302;SB=-4.360e+02;SOR=0.421;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,31:75:99:817,0,1193
2	235962210	rs10177808	T	C	968.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.697;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=4.860;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-0.616;SB=-5.660e+02;SOR=0.316;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,34:66:99:997,0,906
2	236433161	rs62191529	G	A	1581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.010;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=7.125;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.460;SB=-9.600e+02;SOR=0.577;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,60:114:99:1610,0,1433
2	236433331	rs11689907	T	C	1203.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-4.000e+02;SOR=2.133;VQSLOD=6.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1232,96,0
2	236433390	rs10207027	G	A	693.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=-8.097e+01;SOR=3.716;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:722,54,0
2	236617582	rs3754671	T	C	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.051;SB=0.00;SOR=0.693;VQSLOD=10.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:236,0,274
2	236617595	rs3754670	T	C	370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=0.092;SB=0.00;SOR=0.776;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:399,0,355
2	236685678	rs62190872	G	C	1083.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.071;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.927;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.860;SB=-5.600e+02;SOR=0.423;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,42:91:99:1112,0,1434
2	236716006	rs8178996	T	A	1067.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.371;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-0.694;SB=-4.900e+02;SOR=1.206;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,41:77:99:1096,0,939
2	236761396	rs13006916	C	T	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.864;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.585;SB=-3.700e+02;SOR=0.641;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,24:51:99:643,0,637
2	236761414	rs370965020	C	CCAGG	1696.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;DB;DP=51;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.97;RPA=1,2;RU=CAGG;ReadPosRankSum=0.220;SB=-8.480e+02;SOR=0.481;STR;VQSLOD=4.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,26:51:99:1734,0,1419
2	236839616	rs77020450	C	T	476.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-0.044;SB=-9.400e+01;SOR=0.869;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:505,0,521
2	236957822	rs2034648	G	A	5489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=181;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-3.295e+03;SOR=0.846;VQSLOD=4.27;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5518,403,0
2	237029104	rs2278884	C	T	684.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.36;SB=-4.600e+02;SOR=0.922;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:51:713,51,0
2	237032523	rs11893568	A	G	70.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=7.404;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.43;ReadPosRankSum=0.175;SB=-8.197e+01;SOR=0.036;VQSLOD=6.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:12:99:99,0,203
2	237032607	rs11895915	T	G	521.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.825;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.464;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-0.529;SB=-1.790e+02;SOR=0.400;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,20:42:99:550,0,679
2	237032703	rs8178994	T	C	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-1.021;SB=-3.910e+02;SOR=0.689;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,27:63:99:628,0,959
2	237032837	rs11899677	G	A	82.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.562;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.91;ReadPosRankSum=-0.354;SB=0.00;SOR=0.188;VQSLOD=10.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:111,0,363
2	237149941	rs6756597	C	T	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.919;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.93;ReadPosRankSum=-0.113;SB=-5.800e+01;SOR=0.798;VQSLOD=8.63;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,10:34:99:230,0,751
2	237150166	rs2015983	A	C	682.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-1.653e+02;SOR=2.636;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:711,57,0
2	237239783	rs7601923	T	C	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.447;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=1.139;SB=-3.101e+01;SOR=0.784;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:331,0,385
2	237252454	rs72978647	C	A	696.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.458;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.780;SB=-4.550e+02;SOR=0.675;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,29:48:99:725,0,488
2	237255303	rs62192371	A	G	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.076;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.94;ReadPosRankSum=1.984;SB=-1.133e+01;SOR=1.930;VQSLOD=5.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,5:21:99:153,0,418
2	237374309	rs35432941	C	T	1184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.808;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.011;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=-1.729;SB=-3.060e+02;SOR=0.948;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1213,0,1050
2	237395443	rs1986381	C	G	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.564;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.708;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=-0.610;SB=-5.200e+01;SOR=1.445;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,10:32:99:264,0,559
2	237396935	rs6751722	G	A	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.177;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.042;SB=-3.000e+01;SOR=1.179;VQSLOD=9.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,12:30:99:378,0,522
2	237489904	rs1045879	C	T	784.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.557;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-1.490;SB=-4.120e+02;SOR=0.665;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,29:63:99:813,0,950
2	238166147	rs4377288	G	A	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.351;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.455;HaplotypeScore=2.7985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=0.904;SB=-1.800e+02;SOR=1.338;VQSLOD=7.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,17:44:99:451,0,628
2	238243292	rs1131296	G	A	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.647;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=9.840;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.66;ReadPosRankSum=0.585;SB=-6.100e+01;SOR=2.133;VQSLOD=6.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,13:42:99:350,0,746
2	238243369	rs10201909	G	A	858.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-0.386;SB=-3.530e+02;SOR=0.544;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,30:56:99:887,0,663
2	238243464	rs2270669	C	G	1682.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.00;SB=-8.380e+02;SOR=1.094;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1711,123,0
2	238244575	rs4233631	T	C	741.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-3.677e+01;SOR=4.615;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:57:770,57,0
2	238244963	COL6A3	A	G	2951.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.54;SB=-1.248e+03;SOR=1.455;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2980,232,0
2	238249630	COL6A3	C	T	1983.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-1.178;SB=-1.220e+03;SOR=0.719;VQSLOD=8.18;culprit=DP	GT:AD:DP:GQ:PL	0/1:75,76:151:99:2012,0,2102
2	238253332	rs10084221	G	A	2770.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;DB;DP=181;Dels=0.00;ExcessHet=3.0103;FS=0.547;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=0.420;SB=-1.634e+03;SOR=0.625;VQSLOD=6.35;culprit=DP	GT:AD:DP:GQ:PL	0/1:83,98:181:99:2799,0,2279
2	238253518	rs6725567	C	T	1442.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.485;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.745;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=1.331;SB=-6.290e+02;SOR=0.591;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,53:110:99:1471,0,1815
2	238255120	rs2270656	C	T	545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.981;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.764;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=0.425;SB=-1.210e+02;SOR=1.159;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,20:51:99:574,0,922
2	238255285	rs6761147	G	A	916.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.226;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-0.399;SB=-5.490e+02;SOR=0.613;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,40:82:99:945,0,1159
2	238256825	rs13402341	G	A	628.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.249;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.722;SB=-6.100e+01;SOR=0.741;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,23:61:99:657,0,1231
2	238256885	rs71905592	AGT	A	1865.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DB;DP=101;ExcessHet=3.0103;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.282;SB=-5.650e+02;SOR=1.038;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,40:101:99:1903,0,3043
2	238256906	rs66481233	G	GA	2124.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;DB;DP=116;ExcessHet=3.0103;FS=4.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=-0.210;SB=-7.340e+02;SOR=1.175;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,49:116:99:2162,0,2915
2	238257127	rs3790990	C	A	552.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.072;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.210;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-3.359;SB=-2.720e+02;SOR=0.420;VQSLOD=6.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:25,20:45:99:581,0,723
2	238257353	rs2646263	A	G	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-0.815;SB=-1.550e+02;SOR=0.582;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:407,0,270
2	238258814	COL6A3	C	G	962.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.893;HaplotypeScore=1.9552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=1.440;SB=-3.670e+02;SOR=0.518;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,35:93:99:991,0,1662
2	238259675	rs3790995	G	A	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.897;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-0.382;SB=-9.600e+01;SOR=0.657;VQSLOD=9.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,11:29:99:317,0,518
2	238260829	rs3828135	G	T	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.583;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.06;ReadPosRankSum=1.047;SB=-1.766e+00;SOR=0.180;VQSLOD=8.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:81:81,0,292
2	238260986	.	T	C	625.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.989;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.81;ReadPosRankSum=0.096;SB=-2.550e+02;SOR=1.000;VQSLOD=6.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,26:71:99:654,0,1243
2	238261112	rs4663726	G	A	1043.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.557;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=8.106;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-0.074;SB=-5.240e+02;SOR=0.762;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,39:97:99:1072,0,1607
2	238261113	rs4663727	C	A	1052.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.047;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=6.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=0.109;SB=-5.260e+02;SOR=0.781;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,39:98:99:1081,0,1659
2	238261850	rs2646257	T	C	69.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=-0.632;SB=-2.901e+01;SOR=1.270;VQSLOD=8.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:98:98,0,185
2	238262021	rs36117715	G	A	529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.280;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=1.439;SB=-2.510e+02;SOR=1.154;VQSLOD=7.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,21:56:99:558,0,926
2	238266248	rs7577192	G	C	802.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=5.256;HaplotypeScore=1.4942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=-0.629;SB=-1.300e+02;SOR=1.873;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,25:46:99:831,0,718
2	238266633	rs4663730	G	A	495.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=9.660;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=-0.036;SB=-1.513e+02;SOR=0.035;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:524,0,519
2	238267058	rs4663731	G	A	631.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.178;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=1.851;SB=-2.210e+02;SOR=0.948;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,25:49:99:660,0,601
2	238296355	rs114750216	G	A	2130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.167;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=1.288;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.147;SB=-1.368e+03;SOR=0.666;VQSLOD=7.13;culprit=DP	GT:AD:DP:GQ:PL	0/1:69,80:149:99:2159,0,1789
2	238434249	rs2292881	C	T	772.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.930;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.157;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.022;SB=-4.580e+02;SOR=0.592;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,29:47:99:801,0,480
2	238443226	rs2292884	A	G	1567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=5.675;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.605;SB=-9.400e+02;SOR=0.318;VQSLOD=7.67;culprit=DP	GT:AD:DP:GQ:PL	0/1:61,62:123:99:1596,0,1586
2	238443407	rs2292885	G	C	1263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.101;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=1.433;SB=-5.680e+02;SOR=0.622;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,49:88:99:1292,0,1077
2	238443509	rs12471827	A	G	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.734;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-0.463;SB=-3.377e+01;SOR=0.223;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:373,0,385
2	238449007	rs3817362	T	C	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.377;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.933;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=0.795;SB=-5.150e-01;SOR=2.093;VQSLOD=6.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:164,0,319
2	238449023	rs3817363	T	C	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=-0.880;SB=-2.501e+01;SOR=0.693;VQSLOD=9.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:18:99:165,0,306
2	238449107	.	A	G	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.953;SB=-1.230e+02;SOR=0.634;VQSLOD=6.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,9:27:99:268,0,439
2	238475826	rs112601669	C	A	358.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.653;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.635;SB=-1.330e+02;SOR=1.022;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:387,0,322
2	238483164	rs6766	T	C	656.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.962;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=1.404;SB=-3.680e+02;SOR=0.533;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,27:68:99:685,0,1118
2	238484222	rs10202062	G	A	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-1.297;SB=-2.100e+02;SOR=0.765;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,18:29:99:468,0,233
2	238484340	rs60484328	G	A	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.18;ReadPosRankSum=0.728;SB=0.00;SOR=2.303;VQSLOD=8.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:50:300,0,50
2	238484344	rs13414095	T	G	260.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=0.728;SB=0.00;SOR=2.303;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:50:289,0,50
2	238485256	rs75983679	T	C	661.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-0.902;SB=-2.080e+02;SOR=1.112;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,26:55:99:690,0,759
2	238485481	rs75901095	G	A	401.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.821;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=-0.894;SB=-5.800e+01;SOR=0.622;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,15:40:99:430,0,748
2	238486767	rs11542159	A	G	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.022;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.330;SB=-3.750e+02;SOR=0.606;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,24:49:99:545,0,730
2	238494161	rs13414922	C	T	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.16;ReadPosRankSum=-0.381;SB=0.00;SOR=1.802;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:94:239,0,94
2	238494448	rs3829285	T	C	197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.374;SB=0.00;SOR=0.582;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:226,0,269
2	238494494	rs75483841	C	T	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.491;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.993;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.978;SB=-9.732e-01;SOR=1.845;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:297,0,445
2	238494742	rs3751112	A	G	730.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=11.093;HaplotypeScore=2.9928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=0.962;SB=-4.150e+02;SOR=0.156;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,31:72:99:759,0,1115
2	238499866	rs114742872	C	T	64.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.587;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.567;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.94;ReadPosRankSum=2.470;SB=-2.657e-01;SOR=1.329;VQSLOD=3.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,4:22:93:93,0,563
2	238499969	rs80043020	G	A	729.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=2.047;SB=-5.410e+02;SOR=0.811;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,34:69:99:758,0,847
2	238503559	rs2325806	C	G	876.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=8.450;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.028;SB=-2.520e+02;SOR=1.734;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,33:73:99:905,0,1089
2	238536392	rs10184871	T	G	344.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.52;SB=-1.801e+02;SOR=1.179;VQSLOD=4.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:373,27,0
2	238626283	.	G	A	161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.012;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.979;SB=0.00;SOR=0.399;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:190,0,270
2	238632377	rs3769085	A	C	500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.349;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=6.279;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=0.029;SB=-1.905e+01;SOR=1.955;VQSLOD=6.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,19:51:99:529,0,1033
2	238636698	rs150738667	GGTCT	G	363.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=1.327;POSITIVE_TRAIN_SITE;QD=13.64;RPA=2,1;RU=GTCT;ReadPosRankSum=0.927;SB=0.00;SOR=0.392;STR;VQSLOD=3.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,8:22:99:401,0,760
2	238640837	rs56282790	C	T	586.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.997;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.374;SB=-3.080e+02;SOR=0.330;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,23:38:99:615,0,405
2	238641117	rs56182016	C	T	858.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.846;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.943;HaplotypeScore=2.3002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=1.182;SB=-4.970e+02;SOR=0.547;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,35:66:99:887,0,848
2	238643907	rs3769078	G	A	1003.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.848;HaplotypeScore=3.0895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-0.872;SB=-6.390e+02;SOR=0.551;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1032,0,1002
2	238643990	rs3769077	G	A	641.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.862;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.340;SB=-2.200e+02;SOR=0.765;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,24:53:99:670,0,852
2	238644136	rs3820810	A	G	114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.47;ReadPosRankSum=0.207;SB=-5.000e+01;SOR=0.542;VQSLOD=8.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,5:21:99:143,0,474
2	238659708	rs3769062	C	T	391.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.161;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=1.519;SB=-9.732e-01;SOR=2.303;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:420,0,449
2	238661832	rs733579	T	C	363.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-0.562;SB=-3.876e+01;SOR=0.551;VQSLOD=10.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:392,0,173
2	238661870	rs3832061	GT	G	444.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;DB;DP=33;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;RPA=9,8;RU=T;ReadPosRankSum=1.236;SB=-8.900e+01;SOR=1.123;STR;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:482,0,274
2	238662154	rs3769061	A	G	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.028;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=-0.105;SB=-7.000e+01;SOR=1.022;VQSLOD=9.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,17:30:99:534,0,366
2	238667501	.	G	GA	85.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;DP=13;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.79;RPA=8,9;RU=A;ReadPosRankSum=-0.985;SB=-6.297e+01;SOR=0.036;STR;VQSLOD=6.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:13:99:123,0,133
2	238668802	rs3213868	A	G	1603.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=3.346;HaplotypeScore=3.4945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.677;SB=-9.650e+02;SOR=0.453;VQSLOD=7.65;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:59,61:120:99:1632,0,1414
2	238671117	rs734388	A	G	945.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.349;SB=-5.960e+02;SOR=0.693;VQSLOD=9.86;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,40:76:99:974,0,849
2	238671328	rs868119	A	G	949.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.227;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=8.698;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=0.375;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=0.766;SB=-4.850e+02;SOR=0.152;VQSLOD=0.369;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,29:47:99:978,0,538
2	238672703	rs3739038	C	G	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.451;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=0.921;SB=-1.860e+02;SOR=0.468;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,13:31:99:345,0,519
2	238683166	rs2279644	G	A	640.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.629;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.989;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.414;SB=-4.790e+02;SOR=0.606;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,29:60:99:669,0,924
2	238687893	rs60023357	G	A	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.974;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.653;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=0.655;SB=-9.732e-01;SOR=1.355;VQSLOD=7.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,12:36:99:363,0,776
2	238688244	rs1151798	A	G	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-4.276e+01;SOR=3.442;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:410,30,0
2	238726186	rs200784326	A	G	618.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.67;ReadPosRankSum=2.542;SB=-2.600e+02;SOR=0.596;VQSLOD=6.73;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:35,23:58:99:647,0,1099
2	238730317	rs62196084	A	G	97.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.11;ReadPosRankSum=1.077;SB=-3.001e+01;SOR=0.188;VQSLOD=9.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:126,0,339
2	238730635	rs56387887	G	A	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-1.188;SB=0.00;SOR=0.446;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:153,0,244
2	238733016	rs4663795	G	A	1160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.757;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=7.240;HaplotypeScore=2.7878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.971;SB=-2.640e+02;SOR=1.488;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,41:103:99:1189,0,1611
2	238742837	rs55675197	T	C	537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.352;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.205;SB=-1.280e+02;SOR=0.542;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:566,0,807
2	238903310	rs10203101	C	T	759.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.348;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.944;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-0.381;SB=-4.580e+02;SOR=0.485;VQSLOD=8.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,33:74:99:788,0,1143
2	238912120	rs10929262	A	C	1239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.103;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-1.528;SB=-5.680e+02;SOR=0.998;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,45:101:99:1268,0,1476
2	238925461	rs35692652	TC	T	297.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;RPA=2,1;RU=C;ReadPosRankSum=0.982;SB=0.00;SOR=0.602;STR;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:20:99:335,0,386
2	238925473	rs2875817	G	A	229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.337;SB=0.00;SOR=0.818;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:258,0,238
2	238939000	rs6431578	G	A	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=2.5439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=0.179;SB=-8.097e+01;SOR=0.148;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:210,0,117
2	238939370	rs11679080	C	T	856.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.453;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.458;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=2.168;SB=-4.390e+02;SOR=0.247;VQSLOD=7.03;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,33:52:99:885,0,451
2	238944441	rs3832063	ACT	A	491.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.279;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.88;ReadPosRankSum=0.743;SB=0.00;SOR=1.022;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:529,0,401
2	238972827	rs821480	T	C	395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.059;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=-1.282;SB=-1.765e+00;SOR=2.235;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:424,0,244
2	238990388	rs3210400	G	A	2229.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.350;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=3.383;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.345;SB=-1.171e+03;SOR=0.946;VQSLOD=7.07;culprit=DP	GT:AD:DP:GQ:PL	0/1:93,89:182:99:2258,0,2412
2	238991560	rs2278743	T	C	186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=-1.906;SB=0.00;SOR=0.223;VQSLOD=8.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:22:99:215,0,523
2	238991796	rs2278742	C	T	1966.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.064;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=2.045;HaplotypeScore=4.4570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.950;SB=-8.800e+02;SOR=0.873;VQSLOD=7.46;culprit=DP	GT:AD:DP:GQ:PL	0/1:80,73:154:99:1995,0,2239
2	238999883	rs1128552	T	C	908.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.760;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.100;HaplotypeScore=6.6288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=2.174;SB=-3.030e+02;SOR=0.455;VQSLOD=7.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,34:63:99:937,0,814
2	239000091	rs17069	T	G	241.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.815;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=-1.089;SB=-6.400e+01;SOR=0.400;VQSLOD=8.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,9:31:99:270,0,650
2	239002480	rs72316729	CTTG	C	2342.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DB;DP=108;ExcessHet=3.0103;FS=2.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.97;RPA=2,1;RU=TTG;ReadPosRankSum=1.046;SB=-1.185e+03;SOR=0.454;STR;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,46:108:99:2380,0,3103
2	239005586	rs13033964	G	A	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.093;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.611;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.72;ReadPosRankSum=-1.439;SB=-2.657e-01;SOR=2.376;VQSLOD=5.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:99:129,0,295
2	239006592	rs369680879	A	G	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.246;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-1.348;SB=-7.100e+01;SOR=0.368;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:251,0,277
2	239006650	.	T	C	421.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.312;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.81;ReadPosRankSum=2.043;SB=-1.490e+02;SOR=0.634;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,16:39:99:450,0,586
2	239006879	rs12993309	C	T	689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.087;HaplotypeScore=13.9583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-0.247;SB=-3.720e+02;SOR=1.054;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,27:54:99:718,0,485
2	239007755	rs68159827	CATT	C	316.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;RPA=2,1;RU=ATT;ReadPosRankSum=-0.436;SB=-1.040e+02;SOR=0.425;STR;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,7:21:99:354,0,736
2	239007806	rs1054640	A	G	196.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.62;ReadPosRankSum=0.128;SB=-8.800e+01;SOR=0.536;VQSLOD=8.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,10:35:99:225,0,736
2	239007850	rs1054641	T	A	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.86;ReadPosRankSum=-0.149;SB=-1.780e+02;SOR=0.602;VQSLOD=8.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,16:52:99:333,0,964
2	239007991	rs15787	T	A	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.335;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-0.798;SB=-3.050e+02;SOR=0.280;VQSLOD=7.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,20:46:99:469,0,786
2	239010690	rs34878344	C	A	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=0.876;SB=-1.270e+02;SOR=1.022;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:319,0,353
2	239010719	rs36066915	T	C	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=1.507;SB=-1.320e+02;SOR=0.760;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:264,0,385
2	239016539	rs935415	C	G	1953.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;DB;DP=194;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=-0.085;SB=-1.211e+03;SOR=0.678;VQSLOD=5.87;culprit=DP	GT:AD:DP:GQ:PL	0/1:115,79:194:99:1982,0,2926
2	239016640	rs878134	G	T	1320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.641;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.037;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.731;SB=-2.450e+02;SOR=1.003;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,45:102:99:1349,0,1703
2	239025523	rs11903074	T	C	1763.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;SB=-8.070e+02;SOR=1.292;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1792,129,0
2	239025630	rs11904159	T	C	868.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.066;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.574;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=-0.640;SB=-3.060e+02;SOR=1.288;VQSLOD=8.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,35:57:99:897,0,596
2	239025645	rs11897736	C	T	795.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.606;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.039;SB=-1.870e+02;SOR=1.469;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,29:50:99:824,0,580
2	239033901	rs10172440	T	C	836.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-4.400e+02;SOR=1.022;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:865,63,0
2	239034043	rs10170048	A	C	347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.75;SB=-8.197e+01;SOR=2.833;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:30:376,30,0
2	239036270	rs13382446	C	T	823.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.555;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.573;SB=-3.150e+02;SOR=1.106;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,32:72:99:852,0,1021
2	239036416	rs12692214	T	C	1828.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-7.950e+02;SOR=1.287;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1857,135,0
2	239039183	rs73102303	G	A	441.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-0.050;SB=-2.160e+02;SOR=0.829;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:35:99:470,0,491
2	239039637	rs4663845	T	C	1421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-6.130e+02;SOR=1.508;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1450,111,0
2	239039779	rs73102306	G	A	224.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-0.137;SB=-7.700e+01;SOR=1.049;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:253,0,460
2	239039841	rs10172220	A	G	537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.934;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.261;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=-0.929;SB=-1.910e+02;SOR=1.609;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,19:33:99:566,0,403
2	239039896	rs10182906	G	C	1673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-7.020e+02;SOR=1.487;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1702,126,0
2	239040187	rs12692215	T	C	2444.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-9.180e+02;SOR=1.576;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2473,181,0
2	239040218	rs73102309	G	A	1243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-1.406;SB=-5.240e+02;SOR=0.614;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,45:78:99:1272,0,830
2	239040343	rs73102311	G	A	1377.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.939;HaplotypeScore=2.2859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.224;SB=-8.060e+02;SOR=0.403;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,51:87:99:1406,0,1039
2	239050033	rs12692216	C	T	1153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.685;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=4.438;HaplotypeScore=1.6647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-0.916;SB=-4.780e+02;SOR=1.273;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,41:78:99:1182,0,1105
2	239050142	rs73102336	G	A	791.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.375;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.156;SB=-5.420e+02;SOR=0.347;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,36:69:99:820,0,1016
2	239050356	rs4144851	C	G	276.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.07;SB=-2.011e+02;SOR=1.022;VQSLOD=4.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:21:305,21,0
2	239051550	rs935411	T	C	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.75;SB=-2.391e+02;SOR=0.836;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:30:402,30,0
2	239053685	rs13013945	A	C	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.435;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.453;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-1.470;SB=-2.450e+02;SOR=0.223;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:362,0,356
2	239054504	rs11674140	G	T	869.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-5.450e+02;SOR=0.826;VQSLOD=5.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:66:898,66,0
2	239059484	rs7605194	T	C	1437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.23;SB=-3.200e+02;SOR=2.531;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1466,108,0
2	239070376	rs72989058	C	T	1606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.590;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=6.328;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-2.394;SB=-8.960e+02;SOR=0.569;VQSLOD=6.53;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:45,58:103:99:1635,0,1226
2	239072506	rs117194634	G	A	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-1.864;SB=-9.800e+01;SOR=0.654;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:204,0,133
2	239075935	rs3820817	A	G	589.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.558;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.619;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.219;SB=-3.360e+02;SOR=0.368;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,20:43:99:618,0,685
2	239081996	rs11309913	TC	T	415.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.98;RPA=7,6;RU=C;ReadPosRankSum=1.514;SB=-1.650e+02;SOR=1.329;STR;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,14:16:29:453,0,29
2	239082040	rs7585597	T	C	600.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-2.471e+02;SOR=1.493;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:629,45,0
2	239082166	.	G	GC	2296.73	PASS	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;RPA=2,3;RU=C;SB=-7.670e+02;SOR=1.528;STR;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2334,168,0
2	239082526	rs3739059	C	T	60.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.52;ReadPosRankSum=0.000;SB=-4.176e+01;SOR=0.061;VQSLOD=6.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:89:89,0,236
2	239092474	rs2305173	C	T	119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.072;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.837;HaplotypeScore=2.8134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.44;ReadPosRankSum=-1.293;SB=-6.800e+01;SOR=0.340;VQSLOD=6.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:99:148,0,491
2	239092544	rs74653364	G	A	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.039;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-1.353;SB=-5.800e+01;SOR=1.802;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:296,0,360
2	239092893	rs12623230	C	T	239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=0.502;SB=0.00;SOR=0.976;VQSLOD=10.12;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:268,0,180
2	239093788	rs6431588	T	C	673.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-1.653e+02;SOR=2.636;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:702,51,0
2	239096955	rs72991006	C	G	368.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.885;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.262;SB=-8.400e+01;SOR=1.688;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:397,0,311
2	239098594	rs34371548	T	C	610.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.708;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.855;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.783;SB=-4.330e+02;SOR=0.449;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,27:53:99:639,0,715
2	239133662	.	G	C	79.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5621;MLEAC=1;MLEAF=0.500;MQ=56.06;MQ0=0;MQRankSum=-1.180;QD=7.98;ReadPosRankSum=2.515;SB=0.00;SOR=1.402;VQSLOD=1.35;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:48:108,0,48
2	239134056	rs7572285	A	G	902.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.627;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.613;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-0.871;SB=-4.390e+02;SOR=0.326;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,34:85:99:931,0,1466
2	239139920	rs11688755	T	C	896.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.995;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=8.683;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=0.762;SB=-5.600e+01;SOR=2.303;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,28:54:99:925,0,762
2	239141505	rs11689432	A	G	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=-0.349;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=-0.381;SB=-4.276e+01;SOR=0.693;VQSLOD=3.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:82:288,0,82
2	239155053	rs934945	C	T	444.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.888;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=0.833;SB=-2.570e+02;SOR=0.557;VQSLOD=8.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,18:57:99:473,0,1067
2	239233732	rs4663304	T	C	80.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=0.091;SB=0.00;SOR=0.330;VQSLOD=10.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:109,0,254
2	239242719	.	G	GTT,GT	340.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.228;DP=20;ExcessHet=3.0103;FS=2.754;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.85;MQ0=0;MQRankSum=2.454;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.93;RPA=14,16,15;RU=T;ReadPosRankSum=0.392;SB=-6.212e+01;SOR=1.863;STR;VQSLOD=0.393;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,7,9:20:99:378,142,190,110,0,118
2	239261866	rs3213874	G	A	683.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.201;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.734;SB=-2.410e+02;SOR=0.608;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,27:51:99:712,0,603
2	239261918	.	C	T	363.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.495;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.54;ReadPosRankSum=-0.834;SB=-6.500e+01;SOR=0.495;VQSLOD=8.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:392,0,484
2	239307245	rs571820	A	G	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.139;SB=-1.765e+00;SOR=1.609;VQSLOD=10.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:205,0,197
2	239342409	rs13033447	C	T	356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.984;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=-0.580;SB=-4.176e+01;SOR=0.368;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:385,0,237
2	239353001	rs2290075	C	T	541.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.235;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.151;SB=-3.390e+02;SOR=0.285;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,24:49:99:570,0,650
2	239355213	rs2278769	C	T	596.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.808;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.286;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=1.258;SB=-2.690e+02;SOR=0.404;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,25:46:99:625,0,579
2	239976697	rs66928221	T	TTATTA	913.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=0.558;SB=-5.501e+01;SOR=0.622;VQSLOD=9.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,13:27:99:951,0,966
2	239990543	.	G	T	413.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.594;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=1;MQRankSum=0.000;QD=12.54;ReadPosRankSum=1.615;SB=-1.790e+02;SOR=0.269;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:442,0,502
2	239990544	.	A	G	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.966;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.532;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=1;MQRankSum=0.000;QD=12.21;ReadPosRankSum=2.003;SB=-1.790e+02;SOR=0.223;VQSLOD=5.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,14:32:99:419,0,471
2	240016488	rs62189551	A	G	179.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.928;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-1.324;SB=0.00;SOR=0.495;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:208,0,306
2	240024654	rs6543510	G	A	240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.564;SB=-1.765e+00;SOR=1.981;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:269,0,242
2	240055901	rs2278778	G	A	310.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.90;SB=-1.543e+02;SOR=1.445;VQSLOD=5.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:24:339,24,0
2	240061166	.	C	T	110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.068;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-0.592;SB=0.00;SOR=0.169;VQSLOD=8.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:139,0,477
2	240066417	rs2290087	A	G	2937.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-1.829e+03;SOR=0.845;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2966,223,0
2	240066526	rs2290088	T	C	2013.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-7.440e+02;SOR=1.863;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2042,159,0
2	240078587	rs5839723	GAC	G	2102.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;RPA=3,2;RU=AC;SB=-1.050e+02;SOR=5.330;STR;VQSLOD=4.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:50:99:2140,132,0
2	240083528	rs3791515	G	A	937.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.58;SB=-4.200e+02;SOR=1.609;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:69:966,69,0
2	240085403	rs11124182	C	A	480.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-3.976e+01;SOR=3.912;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:509,39,0
2	240085674	rs13010577	C	T	1402.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-4.960e+02;SOR=1.828;VQSLOD=6.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1431,108,0
2	240085795	rs2290089	A	C	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=4.977;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:402,33,0
2	240111477	rs531993	A	T	411.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SB=-1.991e+02;SOR=1.329;VQSLOD=5.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:440,33,0
2	240323661	rs1709851	C	A	684.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-3.140e+02;SOR=1.519;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:51:713,51,0
2	240323905	.	T	TG	3431.73	PASS	AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=31.53;RPA=1,2;RU=G;SB=-1.437e+03;SOR=1.091;STR;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3469,226,0
2	240721384	rs2898872	C	A	499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.80;SB=0.00;SOR=5.421;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:528,42,0
2	240721598	rs12613844	T	G	3393.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-1.492e+03;SOR=1.314;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3422,247,0
2	240721728	rs1574030	A	G	2903.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-9.810e+02;SOR=1.995;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2932,217,0
2	240721814	rs1574029	A	C	1155.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6532;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-3.830e+02;SOR=2.012;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1184,87,0
2	240900795	rs4077388	C	T	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.764;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.80;ReadPosRankSum=0.111;SB=-3.500e+01;SOR=0.180;VQSLOD=6.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,8:26:99:205,0,639
2	240912983	rs73105362	G	T	400.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.258;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.387;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.961;SB=-1.180e+02;SOR=1.179;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:36:99:429,0,506
2	240922822	rs958960	C	A	337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.063;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=-2.191;SB=0.00;SOR=1.022;VQSLOD=9.95;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,11:19:99:366,0,273
2	240958129	rs4149540	C	T	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.664;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-1.171;SB=-6.500e+01;SOR=0.368;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:337,0,336
2	240961728	rs2083411	T	C	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.161;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.022;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=-0.477;SB=-3.750e+02;SOR=0.520;VQSLOD=7.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,23:58:99:563,0,873
2	240961852	rs7596788	A	G	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.938;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.59;ReadPosRankSum=-0.273;SB=-1.905e+01;SOR=1.402;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,9:32:99:239,0,707
2	240981179	rs6731916	T	C	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.843;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.83;ReadPosRankSum=0.603;SB=-3.200e+01;SOR=0.287;VQSLOD=9.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:99:120,0,427
2	240981262	rs6728493	A	C	546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.021;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=7.256;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-1.448;SB=-1.950e+02;SOR=1.660;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:575,0,513
2	240981375	rs6732185	T	A	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.431;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-0.132;SB=-1.630e+02;SOR=0.420;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:36:99:503,0,506
2	240981487	rs60617721	A	G	67.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4923;MLEAC=1;MLEAF=0.500;MQ=44.19;MQ0=1;MQRankSum=-0.366;QD=6.78;ReadPosRankSum=0.226;SB=-4.800e+01;SOR=1.170;VQSLOD=1.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,7:10:96:96,0,102
2	240982201	rs73107452	A	G	30.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6305;MLEAC=1;MLEAF=0.500;MQ=50.13;MQ0=0;MQRankSum=-2.572;POSITIVE_TRAIN_SITE;QD=2.56;ReadPosRankSum=0.947;SB=0.00;SOR=0.412;VQSLOD=2.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,5:12:59:59,0,203
2	240982443	rs34596708	C	T	743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.046;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=0.113;SB=-5.290e+02;SOR=0.452;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,33:67:99:772,0,943
2	240982449	rs35318485	C	T	716.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.211;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.127;HaplotypeScore=2.4932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.543;SB=-4.840e+02;SOR=0.421;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,32:63:99:745,0,807
2	240984789	rs12465491	C	T	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.719;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=1.082;SB=-2.370e+02;SOR=0.602;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,20:39:99:490,0,604
2	241066280	rs4292120	C	T	1012.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.629;SB=-5.780e+02;SOR=0.611;VQSLOD=9.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,41:71:99:1041,0,841
2	241073170	rs747741	C	T	409.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.376;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=5.746;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=-0.567;SB=-1.185e+02;SOR=0.100;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:438,0,300
2	241073450	rs3749078	C	T	642.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.102;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.913;SB=-1.600e+02;SOR=0.804;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:671,0,602
2	241079382	rs2291769	T	G	715.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.869;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.202;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.273;SB=-3.060e+02;SOR=0.436;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,27:50:99:744,0,632
2	241389808	rs142677254	G	A	630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.331;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-0.799;SB=-1.050e+02;SOR=0.437;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,22:51:99:659,0,872
2	241390516	rs3828336	C	T	346.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.018;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.415;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=-1.479;SB=-1.670e+02;SOR=0.411;VQSLOD=7.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,15:38:99:375,0,632
2	241439326	rs12994525	G	C	1865.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-7.890e+02;SOR=1.609;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1894,135,0
2	241439329	rs12994526	G	T	2012.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-7.500e+02;SOR=1.758;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2041,147,0
2	241439337	rs12994534	G	A	2152.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-9.530e+02;SOR=1.483;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2181,160,0
2	241440020	rs12986801	T	C	4177.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1093;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-2.388e+03;SOR=1.063;VQSLOD=6.08;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4206,304,0
2	241448660	rs71889785	G	GGATA	915.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=64.90;MQ0=0;QD=31.40;RPA=1,2;RU=GATA;SB=-4.576e+01;SOR=4.294;STR;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:953,51,0
2	241452068	rs12695024	C	T	1018.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.41;SB=0.00;SOR=6.666;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1047,81,0
2	241452198	rs12695025	T	C	4284.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-1.637e+03;SOR=1.793;VQSLOD=4.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4313,313,0
2	241452212	rs12695026	T	C	4817.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-2.013e+03;SOR=1.593;VQSLOD=5.77;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4846,346,0
2	241459497	rs68104327	G	A	342.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.294;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-0.228;SB=-1.050e+02;SOR=1.765;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:371,0,606
2	241459732	rs150964422	G	A	474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.249;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=13.249;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=0.395;SB=-1.940e+02;SOR=0.940;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:503,0,338
2	241463453	rs3821348	C	A	1053.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.096;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.838;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=-1.658;SB=-6.010e+02;SOR=0.773;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,39:80:99:1082,0,985
2	241463595	rs35996697	T	C	691.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.064;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.117;SB=-3.460e+02;SOR=0.874;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:720,0,848
2	241463639	rs3796119	C	T	634.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.196;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-1.221;SB=-2.520e+02;SOR=1.261;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,22:48:99:663,0,778
2	241465361	rs68048482	T	C	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.725;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.730;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-0.348;SB=-1.740e+02;SOR=0.200;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:35:99:490,0,545
2	241492255	rs4676428	G	T	4080.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=-1.409e+03;SOR=1.773;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,120:120:99:4109,301,0
2	241496567	rs7609147	A	G	408.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=0.00;SOR=5.136;VQSLOD=8.52;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:437,36,0
2	241496770	rs62621191	C	A	566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.891;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.189;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.091;SB=-2.510e+02;SOR=1.013;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:595,0,602
2	241500674	rs4676426	C	G	591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-8.297e+01;SOR=3.383;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:45:620,45,0
2	241500896	rs1128149	C	T	953.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=6.933;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-1.103;SB=-3.730e+02;SOR=1.215;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,37:92:99:982,0,1607
2	241512049	rs2975769	C	A	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=1.228;SB=-1.630e+02;SOR=0.986;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:463,0,336
2	241512470	rs2001823	G	T	1602.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-7.160e+02;SOR=1.358;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1631,117,0
2	241538074	rs2975766	A	G	843.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;SB=-4.380e+02;SOR=1.071;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:30:63:872,63,0
2	241569329	rs2975785	A	G	674.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-2.840e+02;SOR=1.708;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:703,54,0
2	241569849	rs12468377	C	T	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.456;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=1.475;SB=-1.320e+02;SOR=1.085;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:297,0,315
2	241570092	rs12468453	C	T	1120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.321;SB=-5.370e+02;SOR=0.818;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1149,0,1047
2	241570127	rs12468485	C	T	1171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-0.285;SB=-6.010e+02;SOR=0.836;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,41:79:99:1200,0,1020
2	241570249	rs3749172	A	C	2071.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-1.031e+03;SOR=1.329;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:72:99:2100,160,0
2	241570391	rs2975786	A	G	448.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=0.00;SOR=5.283;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:477,36,0
2	241621866	rs62187796	C	T	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.39;MQ0=0;MQRankSum=-0.814;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=2.290;SB=-2.970e+02;SOR=0.540;VQSLOD=2.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,19:40:99:441,0,623
2	241622209	rs4081908	T	C	849.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-4.540e+02;SOR=1.101;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:878,66,0
2	241627928	rs1560619	A	G	471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.895;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.087;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.00;ReadPosRankSum=0.203;SB=-2.670e+02;SOR=0.444;VQSLOD=7.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,19:59:99:500,0,1049
2	241631476	rs4328629	C	G	370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7294;MLEAC=1;MLEAF=0.500;MQ=54.10;MQ0=0;MQRankSum=-3.440;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-0.090;SB=-1.940e+02;SOR=1.112;VQSLOD=2.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,15:34:99:399,0,520
2	241631665	rs76463197	C	T	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.919;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=-2.021;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=-1.577;SB=-1.700e+02;SOR=0.430;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,18:42:99:411,0,670
2	241660978	rs2060193	T	C	776.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=0.00;SOR=6.091;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:805,60,0
2	241680802	rs56024577	G	A	136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.60;ReadPosRankSum=-1.224;SB=-5.500e+01;SOR=1.555;VQSLOD=6.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,7:18:99:165,0,298
2	241680900	.	C	T	56.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-0.577;SB=-1.765e+00;SOR=0.693;VQSLOD=7.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:85:85,0,262
2	241808347	rs34885252	A	G	496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.534;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.344;SB=-2.430e+02;SOR=0.871;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,17:41:99:525,0,583
2	241810154	rs117043148	C	T	290.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-1.915;SB=-1.300e+02;SOR=0.368;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:319,0,161
2	241810170	rs117357855	T	G	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-1.199;SB=-1.020e+02;SOR=0.412;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:241,0,210
2	241810750	rs74895925	G	A	391.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.05;ReadPosRankSum=0.211;SB=-3.400e+01;SOR=1.911;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:420,0,108
2	241810984	rs77667245	A	C	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-0.712;SB=0.00;SOR=0.693;VQSLOD=9.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:171,0,170
2	241812428	rs117195882	C	T	455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.018;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.141;SB=-2.930e+02;SOR=0.610;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,19:39:99:484,0,549
2	241812461	rs34664134	G	A	394.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.758;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.356;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.162;SB=-2.320e+02;SOR=0.864;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:423,0,443
2	241813195	rs75674404	C	T	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=0.191;SB=0.00;SOR=0.180;VQSLOD=9.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:86:86,0,288
2	241813554	rs117619103	G	A	440.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.476;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.541;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=1.314;SB=-7.000e+01;SOR=0.173;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,16:39:99:469,0,741
2	241813609	rs78178548	C	T	264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.139;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=1.062;SB=0.00;SOR=0.602;VQSLOD=9.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:293,0,305
2	241814315	rs118027405	A	G	85.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=-0.179;SB=-9.732e-01;SOR=1.981;VQSLOD=6.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:114,0,202
2	241815158	rs377629275	A	AG	361.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.12;ReadPosRankSum=-0.114;SB=-8.600e+01;SOR=0.582;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:399,0,224
2	241815308	rs12464426	A	G	554.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-0.732;SB=-3.060e+02;SOR=0.602;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,26:45:99:583,0,480
2	241815473	rs12695032	G	A	438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=-1.153;SB=-1.760e+02;SOR=0.656;VQSLOD=9.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:467,0,271
2	241817516	rs4426527	A	G	1353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.073;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=4.422;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=-0.143;SB=-6.510e+02;SOR=1.270;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,50:82:99:1382,0,775
2	241826517	rs12616061	C	T	1088.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.893;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-0.553;SB=-5.370e+02;SOR=0.608;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,42:92:99:1117,0,1406
2	241826754	rs10933510	G	A	228.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.326;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=1.019;SB=0.00;SOR=0.188;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:30:99:257,0,767
2	241827696	rs4675869	A	G	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.787;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-1.268;SB=-1.300e+02;SOR=0.307;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:232,0,204
2	241828012	rs6708304	T	C	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.111;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=0.161;SB=-1.790e+02;SOR=0.330;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:320,0,398
2	241828034	rs6707568	A	G	677.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-2.590e+02;SOR=1.708;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:51:706,51,0
2	241829610	rs78391362	G	A	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-1.189;SB=-2.701e+01;SOR=1.609;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:297,0,321
2	241829648	rs74954477	C	T	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.23;ReadPosRankSum=0.409;SB=-1.766e+00;SOR=0.941;VQSLOD=9.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:127,0,224
2	241834834	rs117274806	C	T	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.987;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=-0.723;SB=-1.270e+02;SOR=1.270;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,19:26:99:559,0,216
2	241834875	rs3936205	G	A	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.454;SB=-3.300e+02;SOR=0.188;VQSLOD=8.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,24:34:99:643,0,288
2	241862251	rs74633770	G	A	154.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.275;SB=-6.900e+01;SOR=0.892;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:183,0,166
2	241865156	rs4675847	T	C	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.705;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.391;HaplotypeScore=2.8003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=1.037;SB=-1.910e+02;SOR=1.056;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:431,0,440
2	241870534	rs75494813	G	A	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=0.234;SB=-8.700e+01;SOR=0.602;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:265,0,393
2	241872597	rs4441463	A	G	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.953;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.094;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.165;SB=-1.910e+02;SOR=1.203;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:468,0,323
2	241874559	rs12618707	T	C	715.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-2.800e+02;SOR=1.708;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:744,54,0
2	241889798	rs117091177	C	T	570.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.640;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.592;SB=-1.570e+02;SOR=1.463;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:599,0,626
2	241889805	.	G	A	619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.655;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.65;ReadPosRankSum=-0.420;SB=-2.550e+02;SOR=0.804;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,24:49:99:648,0,733
2	241889937	rs4077132	A	G	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.606;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=-0.767;SB=-1.030e+02;SOR=1.577;VQSLOD=6.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,17:49:99:501,0,789
2	241898824	rs10169006	A	G	673.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.928;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.073;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-0.385;SB=-3.340e+02;SOR=0.527;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,27:52:99:702,0,677
2	241904473	rs10432570	G	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.278;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=7.025;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-0.564;SB=-9.000e+01;SOR=1.479;VQSLOD=6.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,10:21:99:235,0,327
2	241904498	rs10432571	G	C	215.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=8.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.178;SB=-9.100e+01;SOR=0.859;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:244,0,317
2	241905779	rs12466789	A	G	438.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.099;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=1.082;SB=-2.730e+02;SOR=0.307;VQSLOD=7.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,19:51:99:467,0,800
2	241922430	rs4577273	T	C	486.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.181;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.037;SB=-2.730e+02;SOR=0.744;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,20:37:99:515,0,487
2	241929228	rs10200024	A	G	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.732;SB=-8.100e+01;SOR=0.941;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:465,0,525
2	241932399	rs61308140	C	G	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=-1.261;SB=-1.410e+02;SOR=0.722;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,15:23:99:501,0,254
2	241974289	rs2074822	G	A	336.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-8.097e+01;SOR=2.494;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:365,27,0
2	241976615	rs34203344	CG	C	1271.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DB;DP=78;ExcessHet=3.0103;FS=2.121;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=1.052;POSITIVE_TRAIN_SITE;QD=16.30;RPA=3,2;RU=G;ReadPosRankSum=-0.125;SB=-3.050e+02;SOR=1.033;STR;VQSLOD=0.319;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,38:78:99:1309,0,1420
2	241979550	rs7571117	T	C	758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=4.709;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=1.936;SB=-3.380e+02;SOR=1.257;VQSLOD=7.49;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:39,32:72:99:787,0,976
2	241987554	rs7590504	G	A	46.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.34;ReadPosRankSum=1.168;SB=-9.732e-01;SOR=0.892;VQSLOD=8.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:75:75,0,372
2	241988392	rs16843211	T	C	1038.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.257;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.857;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=1.474;SB=-5.880e+02;SOR=0.748;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1067,0,1023
2	241991029	rs10206324	A	G	1220.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.39;SB=-5.540e+02;SOR=1.609;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:93:1249,93,0
2	241991896	rs373597652	CAG	C	285.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.614;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=1.600;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.045;SB=-6.000e+01;SOR=0.437;VQSLOD=3.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,9:30:99:323,0,1149
2	241991903	rs28529274	A	G	190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.747;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.81;ReadPosRankSum=0.331;SB=-2.801e+01;SOR=0.582;VQSLOD=8.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,8:28:99:219,0,574
2	242002724	rs74000339	G	A	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=-1.200;SB=0.00;SOR=0.330;VQSLOD=9.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:123,0,246
2	242002828	rs7581709	C	T	695.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-1.205e+02;SOR=3.056;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:54:724,54,0
2	242003558	rs34771867	T	C	402.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SB=-1.613e+02;SOR=1.911;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:431,33,0
2	242004199	rs2286319	G	C	1042.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-4.410e+02;SOR=1.483;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1071,78,0
2	242004219	.	T	TG	1631.73	PASS	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;RPA=1,2;RU=G;SB=-7.400e+02;SOR=0.927;STR;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1669,108,0
2	242004570	rs2286320	C	T	47.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.736;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.41;ReadPosRankSum=0.234;SB=-3.401e+01;SOR=0.072;VQSLOD=5.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:76:76,0,349
2	242004602	rs75363045	G	A	307.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.582;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-0.411;SB=-6.500e+01;SOR=0.804;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:336,0,387
2	242007465	rs5839780	AC	A	1241.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.32;RPA=2,1;RU=C;SB=-4.676e+01;SOR=5.486;STR;VQSLOD=2.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:33:93:1279,93,0
2	242009273	rs13000549	G	T	499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.12;SB=0.00;SOR=5.283;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:528,39,0
2	242011151	rs6760731	A	G	534.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;SB=-2.780e+02;SOR=0.941;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:18:45:563,45,0
2	242011330	rs6746124	C	A	2420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-1.493e+03;SOR=0.821;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2449,184,0
2	242028741	rs1062748	A	G	1561.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-7.270e+02;SOR=1.298;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1590,114,0
2	242029737	rs61234509	G	A	4086.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=-2.542e+03;SOR=0.967;VQSLOD=5.35;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4115,298,0
2	242033770	rs2302047	T	A	1549.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-8.900e+02;SOR=0.952;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1578,114,0
2	242062130	rs2302049	C	G	1710.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-6.550e+02;SOR=1.919;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1739,135,0
2	242065601	rs75080735	C	T	2260.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;SB=-7.190e+02;SOR=2.070;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2289,166,0
2	242066314	rs2240542	T	C	2682.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-1.389e+03;SOR=0.922;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2711,205,0
2	242072280	rs11684830	G	A	1485.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.452;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=2.778;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.879;SB=-3.860e+02;SOR=1.017;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:62,49:111:99:1514,0,1752
2	242075192	rs2108484	A	G	249.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=1.958;SB=0.00;SOR=0.976;VQSLOD=10.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:278,0,194
2	242077496	rs1470414	C	T	1621.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.176;SB=-9.850e+02;SOR=0.665;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,62:112:99:1650,0,1240
2	242077685	rs1470413	G	A	298.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-0.494;SB=-9.732e-01;SOR=2.476;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:327,0,311
2	242078990	rs115550451	C	T	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.414;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=-0.282;SB=-1.750e+02;SOR=1.387;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,15:22:99:407,0,182
2	242079007	rs2074828	A	G	341.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.868;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-0.691;SB=-1.270e+02;SOR=1.518;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,13:18:99:370,0,145
2	242079233	rs10933531	T	C	150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.027;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=0.908;SB=-1.765e+00;SOR=0.693;VQSLOD=9.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:99:179,0,508
2	242082222	rs2074834	C	A	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=6.410;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-2.512;SB=-1.095e+02;SOR=0.061;VQSLOD=7.10;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:212,0,211
2	242082262	rs6709462	T	C	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=0.152;SB=-9.300e+01;SOR=0.473;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:241,0,295
2	242082480	rs758068	A	C	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.082;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=1.338;SB=-1.350e+02;SOR=0.773;VQSLOD=9.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:386,0,308
2	242082559	rs2066941	T	C	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.309;SB=-3.200e+01;SOR=1.402;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:217,0,171
2	242088921	rs3806599	A	C	2124.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-6.440e+02;SOR=1.999;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2153,157,0
2	242099961	rs2017989	C	T	877.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-4.110e+02;SOR=1.255;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:66:906,66,0
2	242100062	rs11676460	A	G	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.80;ReadPosRankSum=-1.602;SB=0.00;SOR=0.180;VQSLOD=9.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:81:81,0,290
2	242121959	rs34186191	G	A	640.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.624;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=0.023;SB=-1.765e+00;SOR=2.833;VQSLOD=6.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,19:29:99:669,0,248
2	242122391	rs3868	T	C	475.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=0.00;SOR=5.283;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:504,39,0
2	242129487	rs11695874	G	T	889.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.330;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.934;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-1.310;SB=-4.330e+02;SOR=0.521;VQSLOD=7.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,39:77:99:918,0,1059
2	242135017	rs12694996	A	C	809.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;SB=-4.276e+01;SOR=4.804;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:838,63,0
2	242139491	rs2013250	C	T	1155.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-5.110e+02;SOR=1.432;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1184,87,0
2	242140785	rs78154103	C	G	1237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-0.672;SB=-6.150e+02;SOR=0.755;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:76,51:127:99:1266,0,1801
2	242141719	rs2074840	C	T	1247.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.36;SB=-4.200e+02;SOR=1.662;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:93:1276,93,0
2	242142737	rs1179530	T	C	1217.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-2.431e+02;SOR=2.964;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1246,90,0
2	242143011	rs146289885	C	T	319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=10.620;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=0.817;SB=-5.150e-01;SOR=3.702;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,10:19:99:348,0,226
2	242155307	rs749264	C	A	370.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=0.00;SOR=4.804;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
2	242163461	rs77050519	C	G	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=1.407;SB=-1.740e+02;SOR=0.622;VQSLOD=8.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,15:46:99:389,0,858
2	242176188	rs2305071	G	C	1776.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.062;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=3.351;HaplotypeScore=3.5221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.123;SB=-8.560e+02;SOR=1.061;VQSLOD=7.69;culprit=DP	GT:AD:DP:GQ:PL	0/1:56,68:124:99:1805,0,1461
2	242186391	rs2305076	C	T	515.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-0.585;SB=-2.040e+02;SOR=0.560;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:544,0,628
2	242188628	rs77791862	A	G	1716.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-5.650e+02;SOR=2.004;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1745,126,0
2	242189231	rs12475607	T	C	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.996;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-1.955;SB=-6.300e+01;SOR=0.760;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:495,0,723
2	242194583	rs2305075	T	C	1299.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.872;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=0.353;SB=-7.100e+02;SOR=0.537;VQSLOD=8.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,54:86:99:1328,0,909
2	242203776	.	C	CA	148.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;RPA=14,15;RU=A;ReadPosRankSum=0.970;SB=-4.907e+01;SOR=2.303;STR;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,10:12:17:186,0,17
2	242203916	rs11891776	A	C	971.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-5.110e+02;SOR=1.022;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:72:1000,72,0
2	242206956	rs35334418	C	T	2517.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-1.109e+03;SOR=1.497;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2546,190,0
2	242259614	rs6745662	G	A	2383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3477;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.04;SB=-1.418e+03;SOR=0.979;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2412,178,0
2	242263803	rs148452385	CTT	C	124.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;RPA=17,15;RU=T;ReadPosRankSum=-0.480;SB=-2.920e+01;SOR=1.609;STR;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,6:12:10:161,0,10
2	242265313	rs12477089	C	A	428.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-4.176e+01;SOR=3.767;VQSLOD=7.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:457,36,0
2	242283071	rs6750169	C	T	648.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-3.177e+01;SOR=4.514;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:677,51,0
2	242283094	rs6707518	A	G	1240.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-1.245e+02;SOR=4.174;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:93:1269,93,0
2	242285545	rs11683764	A	G	607.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-1.543e+02;SOR=2.303;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:636,51,0
2	242289627	.	T	C	454.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.489;DP=43;Dels=0.00;ExcessHet=3.0103;FS=6.678;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.149;SB=-1.041e+01;SOR=2.200;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,17:43:99:483,0,752
2	242289663	rs67006635	C	CATT	1439.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.70;RPA=1,2;RU=ATT;SB=-1.895e+02;SOR=3.442;STR;VQSLOD=4.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:25:72:1477,72,0
2	242343404	rs3732276	C	T	743.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.085;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.074;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=2.363;SB=-2.400e+02;SOR=0.527;VQSLOD=6.73;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:44,30:74:99:772,0,1184
2	242344333	rs11681497	A	G	375.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.047;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=2.112;SB=-2.150e+02;SOR=0.988;VQSLOD=7.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,17:50:99:404,0,882
2	242350466	rs2240479	A	G	813.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.855;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.912;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.166;SB=-4.630e+02;SOR=0.827;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,31:77:99:842,0,1157
2	242352633	.	A	AT	73.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.27;RPA=9,10;RU=T;ReadPosRankSum=-0.192;SB=0.00;SOR=0.307;STR;VQSLOD=8.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:99:111,0,200
2	242371101	rs757978	C	T	783.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.038;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=8.388;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=1.351;SB=-2.760e+02;SOR=1.681;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,31:71:99:812,0,1081
2	242375813	rs7601738	A	T	1240.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.459;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=1.527;SB=-4.110e+02;SOR=0.728;VQSLOD=9.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,48:91:99:1269,0,1225
2	242402087	rs41266961	G	C	466.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=0.851;SB=-2.801e+01;SOR=1.276;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:495,0,405
2	242402463	rs35319025	C	G	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-0.906;SB=0.00;SOR=0.693;VQSLOD=9.89;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:171,0,176
2	242407588	rs41342147	G	A	986.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.666;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.707;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-0.713;SB=-4.880e+02;SOR=0.339;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,38:65:99:1015,0,817
2	242432409	rs372550589	C	T	1483.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.907;HaplotypeScore=3.7929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.09;ReadPosRankSum=0.069;SB=-8.040e+02;SOR=0.534;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,55:82:99:1512,0,652
2	242433348	rs2018761	A	G	826.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-3.610e+02;SOR=1.528;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:855,66,0
2	242542219	rs192107707	G	A	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=0.282;SB=-4.276e+01;SOR=0.368;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:248,0,148
2	242542298	rs6437269	T	C	605.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.238;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.110;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=-0.398;SB=-7.497e+01;SOR=0.118;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:634,0,500
2	242556732	rs7580021	G	A	617.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.286;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=1.157;SB=-1.400e+02;SOR=0.582;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:646,0,630
2	242557019	rs7580246	G	A	913.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.936;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.381;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=0.896;SB=-1.630e+02;SOR=1.154;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,32:55:99:942,0,658
2	242572846	rs3208142	A	G	1344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=2.496;HaplotypeScore=6.4698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.247;SB=-7.630e+02;SOR=0.488;VQSLOD=7.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,48:108:99:1373,0,1648
2	242573211	rs7424328	T	C	1190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.530;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.787;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=1.121;SB=-5.810e+02;SOR=0.855;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,42:83:99:1219,0,1149
2	242606036	rs6709768	G	C	2353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.214;SB=-1.256e+03;SOR=0.739;VQSLOD=7.19;culprit=DP	GT:AD:DP:GQ:PL	0/1:91,91:182:99:2382,0,2346
2	242607483	rs7565540	G	T	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.219;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-0.259;SB=-9.732e-01;SOR=0.724;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:305,0,533
2	242607484	rs7592829	C	T	301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.012;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-0.259;SB=-3.000e+01;SOR=0.724;VQSLOD=9.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:330,0,550
2	242610773	rs7601000	T	A	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=0.764;SB=-1.670e+02;SOR=0.489;VQSLOD=8.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,13:37:99:352,0,771
2	242611050	rs1130910	C	G	288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.794;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.071;SB=-3.101e+01;SOR=0.350;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,11:28:99:317,0,509
2	242615462	rs5860	T	C	378.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-0.391;SB=0.00;SOR=0.990;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:407,0,286
2	242617157	rs4076644	T	C	598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.845;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.873;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=-0.112;SB=-3.510e+02;SOR=0.519;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:627,0,370
2	242618050	rs1131195	A	G	650.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.429;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=5.785;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.132;SB=-3.020e+02;SOR=1.412;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,26:51:99:679,0,733
2	242625413	rs62191287	A	T	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-1.078;SB=-1.765e+00;SOR=2.030;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:272,0,193
2	242648545	rs7595652	C	T	851.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.443;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-0.571;SB=-3.710e+02;SOR=0.702;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,37:77:99:880,0,1154
2	242648549	rs7568408	G	A	895.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.492;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.225;SB=-3.840e+02;SOR=0.668;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,37:78:99:924,0,1197
2	242658779	rs71351113	A	T	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.971;HaplotypeScore=4.2049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.408;SB=-1.390e+02;SOR=0.184;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:28:99:338,0,260
2	242659554	rs34766121	C	T	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.838;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-0.227;SB=-3.400e+01;SOR=0.693;VQSLOD=9.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:302,0,344
2	242662761	rs7572153	T	C	567.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.726;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-0.193;SB=-2.200e+02;SOR=0.215;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:596,0,474
2	242707101	rs6756901	A	G	436.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=0.038;SB=-1.370e+02;SOR=0.551;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,15:32:99:465,0,478
2	242716380	rs12469459	A	T	2494.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-1.438e+03;SOR=0.954;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2523,181,0
2	242716592	rs73011941	C	A	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.327;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.467;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=-0.057;SB=-2.040e+02;SOR=0.231;VQSLOD=7.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,15:32:99:343,0,469
2	242743651	rs744986	G	A	415.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.008;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.000;SB=0.00;SOR=2.049;VQSLOD=9.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,12:16:99:444,0,103
2	242750231	rs35392728	T	G	851.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.889;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-0.585;SB=-1.710e+02;SOR=0.866;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,31:58:99:880,0,766
2	242750460	rs34748986	T	C	2089.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-8.990e+02;SOR=1.437;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2118,166,0
2	242755100	rs11693567	G	A	174.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=-0.674;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.621;SB=-1.765e+00;SOR=1.863;VQSLOD=2.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:203,0,189
2	242755599	rs66482163	G	A	448.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=1.031;SB=-1.770e+02;SOR=0.776;VQSLOD=9.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,17:21:99:477,0,100
2	242757334	rs3749152	G	A	193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.619;SB=-1.765e+00;SOR=1.609;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:222,0,219
2	242757820	rs11545301	G	A	485.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.842;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-0.311;SB=-3.000e+02;SOR=0.693;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:40:99:514,0,542
2	242758179	rs2293764	C	T	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.431;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=-0.940;SB=-3.340e+02;SOR=0.544;VQSLOD=7.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,23:68:99:563,0,1176
2	242758203	rs2293763	T	C	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.248;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.54;ReadPosRankSum=0.128;SB=-2.490e+02;SOR=0.628;VQSLOD=6.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,19:66:99:460,0,1345
2	242758326	rs2293761	G	A	410.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.714;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.334;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.47;ReadPosRankSum=-0.053;SB=-2.450e+02;SOR=0.623;VQSLOD=7.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,19:55:99:439,0,1113
2	242758447	rs2293760	G	A	487.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-0.095;SB=-1.890e+02;SOR=0.760;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,19:40:99:516,0,576
2	242758475	rs2293759	A	G	433.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2633;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.775;SB=-2.090e+02;SOR=0.474;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,17:32:99:462,0,424
2	242793273	rs2227981	A	G	435.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.053;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=-1.012;SB=-1.250e+02;SOR=0.534;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,18:48:99:464,0,924
2	242793483	rs55855640	C	T	785.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-0.457;SB=-3.660e+02;SOR=0.651;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,33:64:99:814,0,774
2	242793559	rs6705653	T	C	309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.820;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.171;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-1.278;SB=-9.732e-01;SOR=2.303;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:338,0,382
2	242812080	rs4973697	T	C	496.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.075;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=0.552;SB=-2.940e+02;SOR=0.567;VQSLOD=9.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,18:28:99:525,0,258
2	242812875	rs142751561	C	T	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.43;ReadPosRankSum=-0.577;SB=0.00;SOR=0.180;VQSLOD=9.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:77:77,0,295
2	242813124	rs13016102	T	C	3532.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-1.980e+03;SOR=0.912;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3561,256,0
2	242813202	rs28512331	G	A	1110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=2.103;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=-0.065;SB=-4.890e+02;SOR=0.470;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,44:75:99:1139,0,853
2	242813205	rs28380696	A	G	1108.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.082;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-0.351;SB=-3.840e+02;SOR=0.669;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,43:72:99:1137,0,775
2	242813241	rs28392509	C	T	1645.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.92;SB=-3.930e+02;SOR=2.701;VQSLOD=3.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1674,126,0
2	242813276	rs62193136	C	T	369.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.767;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.998;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.817;SB=-1.070e+02;SOR=0.247;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:398,0,559
2	242813299	rs28682292	T	C	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-0.469;SB=-3.500e+01;SOR=1.085;VQSLOD=9.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,14:24:99:416,0,314
2	242814027	rs76439282	C	T	571.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.705;SB=-2.660e+02;SOR=0.963;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,21:39:99:600,0,549
2	242814268	rs114620732	G	T	238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.620;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.63;ReadPosRankSum=-0.742;SB=-6.900e+01;SOR=1.558;VQSLOD=6.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,10:36:99:267,0,715
2	242814283	rs28499542	C	T	130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=6.605;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.63;ReadPosRankSum=0.020;SB=-2.004e+01;SOR=1.509;VQSLOD=6.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,7:36:99:159,0,793
2	242814360	rs28378061	T	C	262.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.41;ReadPosRankSum=0.072;SB=-1.320e+02;SOR=0.899;VQSLOD=6.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,12:41:99:291,0,719
2	242814463	rs28523279	A	T	390.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-0.514;SB=-1.670e+02;SOR=0.859;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:419,0,492
2	242836535	rs28559662	A	G	335.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.453;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.540;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-1.106;SB=-2.100e+02;SOR=0.412;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:364,0,348
2	242839363	rs4973668	G	C	434.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.336;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=1.978;SB=-2.140e+02;SOR=0.491;VQSLOD=7.28;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,18:36:99:463,0,510
2	242839614	rs13025557	T	G	723.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.47;SB=-1.653e+02;SOR=2.636;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:752,54,0
2	242945651	rs56124169	T	C	84.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.9065;MLEAC=1;MLEAF=0.500;MQ=56.38;MQ0=0;MQRankSum=-0.774;QD=3.85;ReadPosRankSum=0.000;SB=-5.000e+01;SOR=1.022;VQSLOD=1.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:24:99:113,0,390
2	242945697	rs10191960	T	C	371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;POSITIVE_TRAIN_SITE;QD=18.59;SB=-2.061e+02;SOR=0.804;VQSLOD=2.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:33:400,33,0
3	239555	rs58240971	C	CT	146.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.567;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.32;RPA=15,16;RU=T;ReadPosRankSum=0.792;SB=-8.679e+01;SOR=0.223;STR;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,10:13:7:183,7,0
3	384880	.	G	T	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.302;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-1.419;SB=0.00;SOR=0.495;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:220,0,317
3	384881	.	C	G	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.583;SB=0.00;SOR=0.307;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:163,0,328
3	386520	rs1499046	C	T	1780.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-4.000e+02;SOR=2.876;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1809,135,0
3	391100	rs13060847	A	G	2351.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-7.390e+02;SOR=2.105;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2380,172,0
3	396116	rs3836376	GCACA	G	510.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.82;RPA=13,11;RU=CA;SB=0.00;SOR=4.615;STR;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:10:27:548,27,0
3	402117	.	C	T	626.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.663;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.917;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.14;ReadPosRankSum=0.352;SB=-3.530e+02;SOR=0.528;VQSLOD=5.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,27:77:99:655,0,1295
3	403288	rs9824311	G	A	187.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.070;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.590;SB=0.00;SOR=0.368;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:216,0,399
3	403297	rs9839027	C	A	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=1.586;SB=-1.766e+00;SOR=0.922;VQSLOD=8.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,7:20:99:213,0,427
3	403308	rs9824442	G	A	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.426;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.552;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.96;ReadPosRankSum=0.310;SB=-1.070e+02;SOR=0.083;VQSLOD=7.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,12:29:99:288,0,553
3	403345	rs9846775	A	G	1178.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-4.840e+02;SOR=1.730;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1207,93,0
3	404771	rs4684390	C	T	1123.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-3.677e+01;SOR=5.549;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:87:1152,87,0
3	405105	rs373254077	A	G	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-2.086;SB=-9.801e+01;SOR=0.120;VQSLOD=5.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,12:26:99:309,0,421
3	417979	rs3773381	A	G	990.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.306;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.897;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-1.232;SB=-5.240e+02;SOR=0.574;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1019,0,1008
3	417994	rs930237	A	G	2274.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.79;SB=-1.205e+03;SOR=1.179;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2303,175,0
3	418089	rs3773380	C	T	1362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=2.483;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-0.578;SB=-6.890e+02;SOR=0.946;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,52:106:99:1391,0,1509
3	439963	rs6442827	A	G	2319.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.445e+03;SOR=0.746;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2348,169,0
3	440028	rs6771714	T	C	1768.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-7.280e+02;SOR=1.402;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1797,141,0
3	440088	rs6771803	T	A	1042.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.97;SB=-1.931e+02;SOR=3.383;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1071,81,0
3	440946	rs2387184	G	A	326.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-3.677e+01;SOR=3.258;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:355,27,0
3	447069	rs11705894	C	T	792.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.08;SB=0.00;SOR=6.184;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:63:821,63,0
3	1134445	rs6807118	C	A	566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.718;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=1.058;SB=-2.190e+02;SOR=0.560;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,22:58:99:595,0,1170
3	1189455	rs3772375	G	A	408.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=0.00;SOR=4.977;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:437,33,0
3	1215013	rs7632166	A	C	1598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.694;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=3.255;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.938;SB=-1.007e+03;SOR=0.416;VQSLOD=7.76;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,62:127:99:1627,0,1690
3	1215083	rs13077503	C	A	1149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.645;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=5.205;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-1.253;SB=-4.110e+02;SOR=0.276;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1178,0,1200
3	1262474	rs2013828	T	C	878.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.962;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=1.703;SB=-5.620e+02;SOR=0.865;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,39:65:99:907,0,618
3	1269596	.	C	G	1701.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DP=125;Dels=0.00;ExcessHet=3.0103;FS=2.267;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.61;ReadPosRankSum=0.482;SB=-9.290e+02;SOR=0.904;VQSLOD=6.39;culprit=DP	GT:AD:DP:GQ:PL	0/1:59,66:125:99:1730,0,1452
3	1337162	rs2063243	A	G	516.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=0.00;SOR=5.421;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:545,42,0
3	1337203	rs565499	A	G	1202.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.80;SB=-3.777e+01;SOR=5.486;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1231,90,0
3	1369404	rs265775	A	G	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=0.269;SB=0.00;SOR=1.270;VQSLOD=10.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:250,0,121
3	1424850	rs2291100	T	G	4868.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-2.523e+03;SOR=0.920;VQSLOD=6.10;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4897,370,0
3	1442968	rs34787015	GAATT	G	592.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=0.264;SB=0.00;SOR=0.540;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:630,0,799
3	1444243	rs13326014	A	G	896.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.981;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.199;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=0.176;SB=-3.180e+02;SOR=0.930;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,31:49:99:925,0,417
3	1637966	rs9879741	G	C	77.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=1.712;SB=-6.300e+01;SOR=0.693;VQSLOD=8.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:106,0,158
3	1638002	rs9870390	T	C	110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-0.541;SB=-6.900e+01;SOR=0.693;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:139,0,141
3	2613001	rs2616585	A	G	302.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=4.008;SB=0.00;SOR=0.693;VQSLOD=8.32;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,11:22:99:331,0,368
3	2671119	rs1351277	A	T	959.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=7.146;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=0.702;SB=-5.440e+02;SOR=0.333;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,35:59:99:988,0,610
3	2777622	rs1554198	A	G	802.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.68;SB=-4.450e+02;SOR=1.071;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:60:831,60,0
3	2787408	rs78860599	A	C	680.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.994;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=23.419;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-2.001;SB=-3.260e+02;SOR=0.007;VQSLOD=2.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:709,0,785
3	2908694	rs6789163	A	G	437.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.451;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-0.746;SB=-9.800e+01;SOR=0.963;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:466,0,343
3	2924686	rs4685575	G	A	339.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=4.804;VQSLOD=9.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:368,30,0
3	3030223	rs13068264	C	A	2063.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-3.550e+02;SOR=3.258;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2092,154,0
3	3080527	rs163543	C	T	925.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-8.097e+01;SOR=4.332;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:954,72,0
3	3081750	rs6802588	A	T	3710.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-1.951e+03;SOR=1.234;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3739,277,0
3	3081825	rs339285	T	C	4219.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-2.538e+03;SOR=0.871;VQSLOD=5.45;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4248,319,0
3	3115478	rs163897	T	C	2005.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.74;SB=-1.350e+03;SOR=0.864;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2034,150,0
3	3115514	rs340807	C	A	1059.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.964;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=1.448;SB=-4.110e+02;SOR=0.573;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,41:68:99:1088,0,787
3	3118005	rs3217673	TTG	T	1167.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;DB;DP=52;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.46;RPA=3,2;RU=TG;ReadPosRankSum=-0.588;SB=-4.370e+02;SOR=0.463;STR;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,28:52:99:1205,0,1061
3	3137155	.	A	AT	662.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.37;RPA=10,11;RU=T;ReadPosRankSum=2.598;SB=-2.570e+02;SOR=0.696;STR;VQSLOD=6.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:69,35:111:99:700,0,1452
3	3139383	rs334802	C	A	348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=2.679;SB=0.00;SOR=0.784;VQSLOD=7.72;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,11:21:99:377,0,336
3	3139957	rs2290610	T	C	906.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.817;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.400;SB=-4.320e+02;SOR=0.400;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,37:74:99:935,0,998
3	3143164	rs6808454	A	C	380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-0.768;SB=-6.000e+01;SOR=0.582;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:409,0,212
3	3143267	rs6771148	G	C	844.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.325;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.393;SB=-5.080e+02;SOR=0.368;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,33:58:99:873,0,808
3	3170792	rs334773	C	T	2705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-1.636e+03;SOR=0.935;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2734,196,0
3	3170910	rs334772	A	G	1279.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-3.300e+02;SOR=2.554;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:96:1308,96,0
3	3171460	rs334769	C	T	1235.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-3.550e+02;SOR=2.362;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1264,93,0
3	3171502	rs334768	C	A	931.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.025;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.745;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.223;SB=-2.470e+02;SOR=1.248;VQSLOD=8.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,33:65:99:960,0,905
3	3171713	rs35796298	G	GCCTGACT	5577.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.77;SB=-1.246e+03;SOR=2.428;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:61:99:5615,172,0
3	3178322	rs186743	G	A	132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.64;ReadPosRankSum=-0.207;SB=-5.900e+01;SOR=0.454;VQSLOD=9.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:21:99:161,0,332
3	3188016	rs3762760	A	G	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.653;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-1.180;SB=-1.765e+00;SOR=1.730;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:454,0,408
3	3188362	rs1672772	A	G	1437.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-4.500e+02;SOR=2.200;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1466,105,0
3	3189059	rs1621648	T	C	377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=0.00;SOR=4.804;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
3	3189279	rs1705805	A	G	1288.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.65;SB=-5.170e+02;SOR=1.209;VQSLOD=4.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1317,99,0
3	3189398	rs1669348	A	G	367.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.988;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=0.675;SB=-1.700e+02;SOR=0.905;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,12:21:99:396,0,252
3	3192458	.	T	A	57.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.725;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-2.107;SB=0.00;SOR=0.074;VQSLOD=7.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:21:86:86,0,607
3	3192460	.	A	C	72.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.881;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-2.108;SB=0.00;SOR=0.074;VQSLOD=7.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:21:99:101,0,584
3	3192524	rs3830315	A	ATAAC	1972.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.998;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.42;RPA=1,2;RU=TAAC;ReadPosRankSum=1.187;SB=-3.980e+02;SOR=0.538;STR;VQSLOD=4.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,31:59:99:2010,0,1508
3	3194107	.	G	GA	227.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;RPA=10,11;RU=A;ReadPosRankSum=-0.245;SB=-7.700e+01;SOR=0.892;STR;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:26:99:265,0,261
3	3196273	rs11300080	AT	A	278.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.34;RPA=8,7;RU=T;SB=0.00;SOR=4.977;STR;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:316,33,0
3	3197871	rs1705789	T	C	605.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.34;SB=-2.421e+02;SOR=1.426;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:45:634,45,0
3	3215954	rs1669321	A	G	1501.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-4.060e+02;SOR=2.352;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1530,111,0
3	3217128	rs11332452	AT	A	90.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.93;RPA=12,11;RU=T;ReadPosRankSum=-1.465;SB=0.00;SOR=2.584;STR;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,6:10:7:127,0,7
3	3221430	rs1672753	C	T	386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;SB=-1.493e+02;SOR=1.765;VQSLOD=6.01;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:30:415,30,0
3	3886580	rs4685689	A	G	1971.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.30;SB=-9.880e+02;SOR=1.010;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2000,147,0
3	3886721	rs3749350	C	A	671.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.988;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.154;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.511;SB=-3.550e+02;SOR=0.483;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,22:45:99:700,0,617
3	3886847	rs3749349	G	C	862.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=1.341;SB=-4.890e+02;SOR=0.641;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,31:64:99:891,0,893
3	3886919	rs3749348	C	T	1175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.795;HaplotypeScore=2.3548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-1.017;SB=-6.040e+02;SOR=0.549;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,43:93:99:1204,0,1368
3	3887876	rs2120609	T	C	1024.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.912;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=1.185;SB=-6.120e+02;SOR=0.699;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1053,0,833
3	4023706	rs1385466	T	C	150.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.548;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-0.935;SB=-3.200e+01;SOR=1.445;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:179,0,142
3	4023868	rs1385467	A	G	188.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-0.996;SB=-6.200e+01;SOR=1.402;VQSLOD=10.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:217,0,135
3	4046691	rs317588	G	A	309.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=0.00;SOR=3.258;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:338,27,0
3	4046731	rs317589	G	A	53.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.14;ReadPosRankSum=-0.424;SB=-1.765e+00;SOR=0.495;VQSLOD=9.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:82:82,0,323
3	4046763	rs62257623	T	G	511.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.612;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=0.406;SB=-7.597e+01;SOR=0.412;VQSLOD=9.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,16:22:99:540,0,161
3	4110440	rs371615337	T	TAAG	1634.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DB;DP=70;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=60.62;MQ0=0;MQRankSum=1.845;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.80;RPA=6,7;RU=AAG;ReadPosRankSum=0.647;SB=-1.430e+02;SOR=1.678;STR;VQSLOD=0.100;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,34:70:99:1672,0,1188
3	4110570	rs711677	G	C	359.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=0.00;SOR=4.977;VQSLOD=8.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:388,33,0
3	4403767	rs2819561	A	G	688.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-4.276e+01;SOR=3.611;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:54:717,54,0
3	4403817	rs2633851	T	A	1412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.46;SB=-2.650e+02;SOR=3.003;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1441,111,0
3	4403818	rs35083095	T	C	668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.003;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.561;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=1.118;SB=-9.900e+01;SOR=1.075;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,22:43:99:697,0,633
3	4403837	rs2633852	A	G	1805.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-5.110e+02;SOR=2.259;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1834,132,0
3	4404087	rs2819560	A	G	858.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-1.105e+02;SOR=3.611;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:887,66,0
3	4452737	rs813811	G	A	1147.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-1.831e+02;SOR=2.712;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1176,90,0
3	4459972	rs698209	A	G	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=-0.579;SB=-6.500e+01;SOR=0.527;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:342,0,226
3	4461569	rs711667	G	A	210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.544;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.126;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=-0.469;SB=-1.905e+01;SOR=1.819;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,10:24:99:239,0,397
3	4461698	rs711666	C	T	1015.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.083;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.823;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.260;SB=-5.980e+02;SOR=0.551;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1044,0,1220
3	4508835	rs374677940	G	A	512.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.067;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.937;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-0.854;SB=-3.160e+02;SOR=0.293;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,20:37:99:541,0,428
3	4558232	rs200534989	G	A	750.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.352;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.860;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-1.041;SB=-3.810e+02;SOR=0.846;VQSLOD=5.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,31:85:99:779,0,1300
3	4562667	rs1038639	T	G	3063.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-1.428e+03;SOR=1.265;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3092,223,0
3	4687470	rs373317846	G	GCT	1605.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;RPA=7,8;RU=CT;SB=-3.220e+02;SOR=2.712;STR;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:42:99:1643,108,0
3	4687498	rs41289624	T	A	316.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.721;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=-1.295;SB=-9.800e+01;SOR=0.368;VQSLOD=7.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,14:34:99:345,0,624
3	4687548	rs4271897	A	G	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-1.047;SB=-4.276e+01;SOR=0.593;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:292,0,118
3	4687577	rs4303850	A	G	185.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=-1.026;SB=0.00;SOR=1.085;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:214,0,130
3	4693553	rs3796336	C	A	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=1.103;SB=-3.300e+01;SOR=0.527;VQSLOD=9.63;culprit=SOR	GT:AD:DP:GQ:PL	0/1:18,15:33:99:472,0,594
3	4693656	rs6442894	C	T	2777.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6759;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-1.221e+03;SOR=1.329;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:89:99:2806,208,0
3	4693937	rs6442895	G	C	580.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=8.567;HaplotypeScore=1.8934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-0.393;SB=-1.480e+02;SOR=2.086;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,21:50:99:609,0,869
3	4693943	rs28724276	G	A	791.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.525;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=8.955;HaplotypeScore=1.8934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-0.308;SB=-5.060e+02;SOR=0.118;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,30:49:99:820,0,567
3	4693953	rs28592010	G	A	748.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.716;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=-1.651;SB=-4.590e+02;SOR=0.193;VQSLOD=7.45;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,31:47:99:777,0,460
3	4693959	rs28461825	C	T	784.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.645;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-1.455;SB=-5.020e+02;SOR=0.213;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,32:48:99:813,0,458
3	4693977	rs28562557	G	A	704.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.456;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-1.001;SB=-2.770e+02;SOR=0.286;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,28:42:99:733,0,413
3	4694010	rs6442896	A	C	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.154;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.779;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.46;ReadPosRankSum=-1.077;SB=-4.800e+01;SOR=1.650;VQSLOD=6.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,11:30:99:282,0,482
3	4694011	rs56896093	G	A	443.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=0.757;SB=-2.512e+02;SOR=0.100;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,19:29:99:472,0,303
3	4694068	rs6442897	C	G	89.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.41;ReadPosRankSum=0.354;SB=0.00;SOR=0.188;VQSLOD=9.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:14:99:118,0,370
3	4695680	rs13316843	G	A	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.934;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=-1.266;SB=-7.997e+01;SOR=0.317;VQSLOD=9.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,12:17:99:359,0,160
3	4712234	rs1994500	G	A	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=1.339;SB=-6.500e+01;SOR=1.022;VQSLOD=9.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:174,0,181
3	4712413	rs2306875	G	A	1200.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.269;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=-0.577;SB=-4.450e+02;SOR=0.579;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,43:76:99:1229,0,899
3	4716811	rs2306877	A	C	203.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.303;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=0.870;SB=-5.300e+01;SOR=1.826;VQSLOD=7.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,8:21:99:232,0,383
3	4722956	rs4684438	A	G	644.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.325;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=9.832;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-0.483;SB=-8.500e+01;SOR=2.336;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,22:49:99:673,0,738
3	4725619	rs3215005	CA	C	486.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.65;RPA=2,1;RU=A;SB=-1.205e+02;SOR=1.981;STR;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:13:36:524,36,0
3	4726947	rs733018	T	G	476.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.769;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=1.220;SB=-3.500e+01;SOR=1.051;VQSLOD=10.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:505,0,351
3	4735533	rs6793265	C	T	272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.228;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.982;SB=-1.765e+00;SOR=1.609;VQSLOD=9.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:301,0,315
3	4738774	rs3749382	A	G	651.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.077;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=-1.266;SB=-2.620e+02;SOR=0.350;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,25:37:99:680,0,301
3	4748193	rs34548572	G	A	347.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.688;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.702;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-0.144;SB=-5.150e-01;SOR=2.049;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,12:34:99:376,0,680
3	4767262	rs7613447	T	C	4071.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-2.315e+03;SOR=1.011;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4100,307,0
3	4774659	rs112777249	C	T	822.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.714;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=5.293;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.948;SB=-2.130e+02;SOR=0.207;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,31:64:99:851,0,1075
3	4776784	rs11920001	A	G	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.840;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.585;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=0.315;SB=-1.380e+02;SOR=0.385;VQSLOD=7.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,11:29:99:309,0,497
3	4808290	rs143093165	T	G	522.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.768;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.479;SB=-1.730e+02;SOR=0.770;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,18:35:99:551,0,494
3	4810573	rs13086334	T	G	156.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=-0.217;SB=0.00;SOR=0.340;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:185,0,343
3	4817057	rs6442905	T	C	2608.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.67;SB=-1.410e+03;SOR=1.130;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2637,199,0
3	4824131	rs6442907	T	C	842.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-3.876e+01;SOR=4.804;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:871,66,0
3	4829732	rs13079522	A	G	606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.222;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.008;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-0.464;SB=-3.250e+02;SOR=0.859;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,24:56:99:635,0,860
3	4829872	.	T	C	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.281;DP=20;Dels=0.00;ExcessHet=3.0103;FS=9.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.29;ReadPosRankSum=0.232;SB=-1.583e+02;SOR=0.039;VQSLOD=4.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:394,0,261
3	4842231	rs2291862	C	T	977.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.014;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.905;SB=-6.040e+02;SOR=0.783;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,40:76:99:1006,0,900
3	4856180	rs711631	T	C	594.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.458;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.299;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=0.056;SB=-2.890e+02;SOR=1.166;VQSLOD=7.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,26:75:99:623,0,1300
3	4856234	rs901854	G	A	269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.912;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.355;HaplotypeScore=11.1557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.82;ReadPosRankSum=-0.899;SB=-5.800e+01;SOR=1.147;VQSLOD=6.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,12:56:99:298,0,1148
3	4856285	rs76604555	G	A	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.7184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=1.963;SB=-1.781e+02;SOR=1.127;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,17:27:52:454,0,52
3	4856993	rs6442911	C	G	826.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-3.876e+01;SOR=4.804;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:63:855,63,0
3	4859725	rs9844268	G	A	1174.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-3.810e+02;SOR=2.012;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1203,90,0
3	4927308	rs6794077	A	G	552.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.64;SB=-2.341e+02;SOR=1.721;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:45:581,45,0
3	4940288	rs11363851	AG	A	435.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;RPA=2,1;RU=G;SB=-4.576e+01;SOR=3.442;STR;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:473,33,0
3	4940658	rs72170014	CAGAG	C	310.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.13;RPA=14,12;RU=AG;ReadPosRankSum=-0.619;SB=0.00;SOR=1.863;STR;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,6:12:57:348,0,57
3	4942432	rs724135	C	G	371.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.397;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=-0.750;SB=-3.876e+01;SOR=0.551;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:400,0,196
3	5025514	rs72131734	G	GGTGT	966.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;RPA=13,15;RU=GT;SB=-1.845e+02;SOR=2.833;STR;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:31:50:1004,50,0
3	5241223	rs377120	C	T	1849.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-1.000e+03;SOR=0.836;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1878,141,0
3	5241309	rs410509	C	A	1489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-4.770e+02;SOR=2.110;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1518,108,0
3	6814988	rs6781770	C	T	553.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;SB=-3.780e+02;SOR=0.693;VQSLOD=5.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:42:582,42,0
3	6903297	rs3749380	C	T	3597.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-1.154e+03;SOR=2.049;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3626,271,0
3	6903601	rs342034	A	G	2894.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-8.690e+02;SOR=2.250;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2923,214,0
3	7603194	rs1965222	C	T	1264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.034;SB=-8.240e+02;SOR=0.653;VQSLOD=9.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,51:101:99:1293,0,1163
3	7603216	rs73809212	T	G	1081.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.982;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.640;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-0.194;SB=-5.980e+02;SOR=0.871;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,48:96:99:1110,0,1272
3	7620168	rs34373930	A	G	1265.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.260;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=4.526;HaplotypeScore=3.4046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.557;SB=-5.740e+02;SOR=0.336;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,46:84:99:1294,0,1090
3	7620382	rs7614915	C	T	2337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=2.904;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-0.510;SB=-1.091e+03;SOR=0.969;VQSLOD=7.89;culprit=DP	GT:AD:DP:GQ:PL	0/1:71,79:150:99:2366,0,2133
3	7620789	rs1485175	T	C	3567.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-1.819e+03;SOR=0.984;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3596,271,0
3	7620828	rs1485174	G	A	2008.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=2.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=-0.491;SB=-1.076e+03;SOR=0.849;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,69:117:99:2037,0,1289
3	7621093	rs1485173	T	A	412.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=-0.034;SB=0.00;SOR=1.085;VQSLOD=10.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:441,0,283
3	7633044	rs143732933	GA	G	191.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;RPA=7,6;RU=A;ReadPosRankSum=0.578;SB=0.00;SOR=0.914;STR;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:229,0,192
3	7633455	rs77377244	C	T	619.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-0.525;SB=-3.040e+02;SOR=0.818;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:648,0,607
3	7649591	rs2139187	C	A	486.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=-7.697e+01;SOR=2.985;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:515,39,0
3	7649747	rs368321313	A	AT	646.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.44;SB=-1.535e+02;SOR=2.303;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:684,42,0
3	7678010	rs7611935	G	A	1176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=3.933;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.234;SB=-5.830e+02;SOR=0.810;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,45:92:99:1205,0,1256
3	7678090	rs7612048	G	A	1046.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.128;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.006;HaplotypeScore=3.5997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.103;SB=-5.610e+02;SOR=0.422;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1075,0,844
3	7678134	rs17047754	C	T	729.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.561;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.566;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-0.089;SB=-3.370e+02;SOR=0.371;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,29:54:99:758,0,613
3	7781858	rs62233907	C	G	148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.484;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=1.094;SB=-3.777e+01;SOR=0.169;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:177,0,206
3	8543713	.	G	GT	2117.73	PASS	AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.41;RPA=2,3;RU=T;SB=-8.550e+02;SOR=1.199;STR;VQSLOD=4.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:57:99:2155,169,0
3	8543757	rs2324625	A	C	614.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.093;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=1.744;SB=-3.540e+02;SOR=0.310;VQSLOD=7.90;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,23:49:99:643,0,692
3	8556617	rs12715649	A	G	807.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.436;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.292;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=0.235;SB=-4.960e+02;SOR=0.448;VQSLOD=7.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:53,33:86:99:836,0,1577
3	8556784	rs12715650	A	C	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.341;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.39;ReadPosRankSum=0.359;SB=-9.200e+01;SOR=0.437;VQSLOD=7.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,12:45:99:271,0,1079
3	8578748	rs17049237	C	T	549.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.397;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=9.416;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=0.486;SB=-2.650e+02;SOR=0.125;VQSLOD=6.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,22:59:99:578,0,1192
3	8579290	rs6784343	G	A	890.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.647;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.140;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-2.034;SB=-2.830e+02;SOR=1.093;VQSLOD=7.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:39,30:69:99:919,0,1097
3	8590313	rs3088339	T	C	1238.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=5.331;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.220;SB=-7.970e+02;SOR=0.704;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,51:91:99:1267,0,996
3	8591469	rs73020399	G	A	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=0.091;SB=-4.076e+01;SOR=0.399;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:207,0,129
3	8591476	rs66485711	C	G	192.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=0.542;SB=-4.276e+01;SOR=0.399;VQSLOD=9.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:221,0,134
3	8608920	rs171408	G	A	874.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-3.677e+01;SOR=4.977;VQSLOD=6.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:69:903,69,0
3	8609071	rs3774212	G	A	1540.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=1.447;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=1.404;SB=-7.550e+02;SOR=0.853;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,59:122:99:1569,0,1615
3	8667670	rs355056	G	C	402.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-2.411e+02;SOR=0.836;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:431,33,0
3	8667735	rs355057	C	A	993.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-7.797e+01;SOR=4.332;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1022,81,0
3	8667896	rs355058	T	C	3796.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-2.300e+03;SOR=0.814;VQSLOD=5.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3825,274,0
3	8669367	rs5846608	TG	T	2195.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;RPA=4,3;RU=G;SB=-1.020e+03;SOR=0.841;STR;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2233,169,0
3	8675539	rs2276800	G	A	881.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.010;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.570;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.363;SB=-5.020e+02;SOR=0.362;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,31:60:99:910,0,819
3	8675778	rs11131140	T	C	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.096;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.223;SB=-1.010e+02;SOR=0.476;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,12:31:99:363,0,633
3	8676204	rs3774210	A	G	3227.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-1.926e+03;SOR=0.754;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3255,235,0
3	8676945	rs3816911	T	C	2347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.30;SB=-9.330e+02;SOR=1.771;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2376,175,0
3	8701374	rs80210627	T	C	805.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.410;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.203;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.380;SB=-3.840e+02;SOR=1.026;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,31:59:99:834,0,684
3	8701430	rs371133	T	C	1070.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.348;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.294;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=-0.812;SB=-5.720e+02;SOR=0.377;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,38:72:99:1099,0,1073
3	8701689	rs760358	G	C	686.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=9.087;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=-0.188;SB=-2.641e+02;SOR=0.088;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,23:37:99:715,0,440
3	8730260	rs6770204	G	A	282.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.648;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=1.757;SB=-1.570e+02;SOR=0.654;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:311,0,320
3	8730289	rs164450	C	G	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.785;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.980;SB=-1.410e+02;SOR=0.551;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:251,0,287
3	8757311	rs17049469	G	C	330.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.207;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.19;ReadPosRankSum=-1.454;SB=-1.510e+02;SOR=0.892;VQSLOD=6.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,16:46:99:359,0,845
3	8775457	CAV3	G	A	486.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=1.082;SB=0.00;SOR=0.638;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:515,0,547
3	8784046	.	C	CA	124.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.471;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.60;RPA=14,15;RU=A;ReadPosRankSum=-0.693;SB=0.00;SOR=2.833;STR;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,11:13:2:160,2,0
3	8809184	rs237902	G	A	3233.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.937;DB;DP=195;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=-0.901;SB=-1.446e+03;SOR=0.683;VQSLOD=6.85;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,114:195:99:3262,0,2327
3	8809703	rs2228485	G	A	1453.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-2.401e+02;SOR=3.312;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1482,111,0
3	8923308	rs45519434	A	C	183.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.204;SB=0.00;SOR=1.085;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:212,0,125
3	8931984	rs656626	A	C	1204.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-2.021e+02;SOR=3.383;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1233,90,0
3	8932189	rs607531	C	T	1526.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-4.530e+02;SOR=2.352;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1555,117,0
3	8955389	rs373572	C	T	803.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.72;SB=-5.200e+02;SOR=0.906;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:60:832,60,0
3	9005078	rs615967	C	T	1502.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-8.930e+02;SOR=0.952;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1531,111,0
3	9034558	rs511815	C	T	639.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-0.503;SB=-2.130e+02;SOR=0.738;VQSLOD=9.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,24:63:99:668,0,1182
3	9036010	rs637172	T	G	1284.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.297;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=0.096;SB=-5.540e+02;SOR=0.753;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,47:108:99:1313,0,1621
3	9051790	rs341787	G	C	54.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.21;ReadPosRankSum=0.000;SB=0.00;SOR=0.124;VQSLOD=9.33;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:83:83,0,372
3	9055293	rs35295033	G	T	889.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.574;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=-1.939;SB=-2.520e+02;SOR=0.687;VQSLOD=8.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,30:53:99:918,0,765
3	9066853	rs421041	T	C	1229.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-5.550e+02;SOR=1.236;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1258,93,0
3	9069747	rs416685	A	G	1476.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-9.180e+02;SOR=0.776;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1505,111,0
3	9069873	rs10510396	A	G	374.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.309;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.000;SB=-1.790e+02;SOR=0.941;VQSLOD=10.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:403,0,272
3	9074617	rs9839715	C	T	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-0.204;SB=-3.577e+01;SOR=0.307;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:94:141,0,94
3	9090905	rs611406	C	T	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.56;ReadPosRankSum=0.327;SB=0.00;SOR=0.269;VQSLOD=9.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:99:119,0,280
3	9122948	rs2664089	A	G	2071.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-9.830e+02;SOR=1.352;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2100,150,0
3	9166281	rs735253	G	C	199.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.685;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=7.060;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.69;ReadPosRankSum=-1.449;SB=-5.000e+01;SOR=2.043;VQSLOD=6.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,9:23:99:228,0,370
3	9390345	rs2728938	T	C	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=1.275;SB=-3.200e+01;SOR=0.818;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:201,0,283
3	9406661	rs2728949	G	A	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-0.880;SB=0.00;SOR=0.859;VQSLOD=10.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:201,0,173
3	9406836	rs1054975	T	C	768.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.960;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.915;SB=-3.840e+02;SOR=0.551;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,30:63:99:797,0,806
3	9407022	rs2648536	T	C	1309.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.435;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=6.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=0.783;SB=-6.630e+02;SOR=0.861;VQSLOD=7.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,45:76:99:1338,0,890
3	9422210	rs2596916	T	C	853.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.189;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-1.267;SB=-5.240e+02;SOR=0.749;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,33:65:99:882,0,744
3	9425911	rs1129170	G	A	494.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.021;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.805;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-1.216;SB=-1.010e+02;SOR=0.368;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:523,0,631
3	9425944	rs1046788	G	C	620.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=1.693;SB=-1.680e+02;SOR=0.836;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,23:47:99:649,0,695
3	9426224	rs1129174	G	A	683.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-0.149;SB=-3.370e+02;SOR=0.639;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,22:47:99:712,0,761
3	9483315	rs17050347	G	A	580.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.001;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=6.465;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-0.840;SB=-1.440e+02;SOR=1.739;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:609,0,685
3	9489767	rs2258735	T	C	723.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.47;SB=-1.075e+02;SOR=3.160;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:752,54,0
3	9495308	.	G	A	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-2.176;SB=0.00;SOR=0.368;VQSLOD=7.38;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:154,0,291
3	9495385	rs2648580	A	G	1389.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-3.910e+02;SOR=2.093;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1418,105,0
3	9547950	rs2625890	G	C	1471.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.25;SB=-8.350e+02;SOR=1.118;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1500,108,0
3	9547959	rs2625889	C	T	1441.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=-8.150e+02;SOR=1.157;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1470,105,0
3	9730284	rs41278545	A	G	688.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.208;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.091;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=-0.352;SB=-1.320e+02;SOR=1.312;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,23:45:99:717,0,643
3	9730868	rs159142	G	C	59.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.98;ReadPosRankSum=-0.210;SB=0.00;SOR=0.223;VQSLOD=9.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:88:88,0,252
3	9743398	rs144534173	TGGAG	T	1431.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DB;DP=66;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.90;RPA=3,2;RU=GGAG;ReadPosRankSum=0.705;SB=-5.880e+02;SOR=0.928;STR;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,25:66:99:1469,0,2121
3	9757086	rs697820	C	G	1151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.579;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.868;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=0.010;SB=-6.220e+02;SOR=0.713;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,38:76:99:1180,0,1024
3	9757511	rs3914774	T	C	141.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.000;SB=0.00;SOR=0.446;VQSLOD=9.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:170,0,228
3	9757754	rs708571	G	A	877.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.788;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.137;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=-0.997;SB=-4.240e+02;SOR=1.027;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,32:62:99:906,0,741
3	9768336	rs3868893	C	G	1697.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.891;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=1.324;HaplotypeScore=2.5779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.591;SB=-1.011e+03;SOR=0.856;VQSLOD=7.03;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,66:143:99:1726,0,1894
3	9769008	rs3891072	A	T	1005.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.186;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=-0.940;SB=-5.770e+02;SOR=0.448;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,38:57:99:1034,0,547
3	9788168	rs2269112	C	T	337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.905;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=4.141;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=-1.632;SB=-2.203e+01;SOR=1.651;VQSLOD=7.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,13:36:99:366,0,670
3	9798140	rs2072668	C	G	1304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.587;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=11.996;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.572;SB=-4.170e+02;SOR=1.749;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1333,0,1374
3	9798773	rs1052133	C	G	433.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-2.418;SB=-1.700e+02;SOR=0.791;VQSLOD=7.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,18:41:99:462,0,626
3	9801080	rs2304277	G	A	1242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.163;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.382;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=-1.762;SB=-5.100e+02;SOR=1.140;VQSLOD=7.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,39:66:99:1271,0,801
3	9821914	rs14204	C	T	271.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.000;SB=-4.176e+01;SOR=0.184;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:300,0,312
3	9823302	rs6443264	T	G	685.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.413;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.237;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.345;SB=-3.400e+02;SOR=0.431;VQSLOD=8.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,24:62:99:714,0,1038
3	9828676	rs7621556	G	C	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.980;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=0.354;SB=-9.732e-01;SOR=2.746;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:460,0,340
3	9829171	rs2290309	G	A	798.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.626;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.257;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=-0.241;SB=-1.650e+02;SOR=1.402;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,25:41:99:827,0,439
3	9829226	rs293786	A	C	1186.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.213;DB;DP=66;Dels=0.02;ExcessHet=3.0103;FS=4.080;HaplotypeScore=3.7990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=-0.453;SB=-2.690e+02;SOR=1.455;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,38:65:99:1215,0,730
3	9834905	rs2276797	C	T	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.04;ReadPosRankSum=0.489;SB=-5.900e+01;SOR=0.941;VQSLOD=9.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:20:99:162,0,281
3	9841989	rs6443266	A	G	1335.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-4.970e+02;SOR=1.662;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1364,99,0
3	9847673	rs7637785	A	C	439.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.091;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.999;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.674;SB=-1.500e+02;SOR=0.352;VQSLOD=7.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,16:24:99:468,0,219
3	9859198	rs11131190	G	A	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=0.204;SB=0.00;SOR=1.085;VQSLOD=10.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:198,0,130
3	9859456	rs3806672	C	G	955.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.933;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-0.913;SB=-4.700e+02;SOR=1.096;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,40:82:99:984,0,1039
3	9859460	rs3806671	C	T	987.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.926;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=2.936;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=0.684;SB=-6.640e+02;SOR=0.436;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1016,0,959
3	9860623	rs3806668	T	G	823.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.974;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.440;SB=-3.320e+02;SOR=0.941;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,31:65:99:852,0,861
3	9867625	rs3732527	C	T	1160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=7.407;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-0.688;SB=-3.560e+02;SOR=1.550;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,42:87:99:1189,0,1310
3	9868577	rs12490900	A	G	68.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.05;ReadPosRankSum=1.078;SB=0.00;SOR=0.120;VQSLOD=9.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,4:17:97:97,0,463
3	9870414	rs17050593	C	T	784.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.446;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=0.418;SB=-2.570e+02;SOR=1.170;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,26:53:99:813,0,769
3	9870857	rs2290303	G	A	2585.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.988;DB;DP=195;Dels=0.00;ExcessHet=3.0103;FS=0.537;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-1.066;SB=-1.330e+03;SOR=0.598;VQSLOD=5.76;culprit=DP	GT:AD:DP:GQ:PL	0/1:98,97:195:99:2614,0,2854
3	9871030	rs2290305	T	G	1163.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=5.976;HaplotypeScore=2.9571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-1.340;SB=-2.810e+02;SOR=1.420;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,39:92:99:1192,0,1551
3	9874670	rs7622954	G	A	435.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.299;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=-0.093;SB=-3.300e+01;SOR=2.179;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,14:19:99:464,0,134
3	9876295	rs35783864	G	A	717.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=-0.202;SB=-3.280e+02;SOR=0.829;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,25:45:99:746,0,544
3	9876301	rs13088594	G	T	1642.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;SB=-7.870e+02;SOR=1.022;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1671,126,0
3	9896351	rs279563	A	G	3543.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-1.386e+03;SOR=1.786;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3572,256,0
3	9911388	rs375759886	C	T	349.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.531;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-1.716;SB=-1.320e+02;SOR=0.350;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:378,0,616
3	9912097	rs73118319	G	A	1005.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.987;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=-1.693;SB=-2.270e+02;SOR=0.638;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,33:63:99:1034,0,854
3	9918776	rs79419480	A	G	146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.027;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=-0.103;SB=-9.000e+01;SOR=0.859;VQSLOD=8.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,8:22:99:175,0,340
3	9919802	rs375015077	C	T	135.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-1.188;SB=0.00;SOR=0.446;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:164,0,253
3	9920041	rs56111543	A	T	1500.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.262;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=4.311;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-1.437;SB=-9.060e+02;SOR=0.392;VQSLOD=6.96;culprit=DP	GT:AD:DP:GQ:PL	0/1:69,64:133:99:1529,0,1885
3	9920138	rs17851444	G	C	1518.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=3.076;HaplotypeScore=3.7209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=0.237;SB=-9.480e+02;SOR=0.475;VQSLOD=6.98;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,62:139:99:1547,0,2163
3	9920247	rs62247501	C	A	682.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.082;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.661;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-0.009;SB=-5.800e+01;SOR=1.095;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,23:52:99:711,0,890
3	9920270	rs370106080	C	A	597.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.037;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-0.175;SB=-6.801e+01;SOR=0.487;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,20:36:99:626,0,483
3	9932337	rs279558	G	C	498.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.84;SB=0.00;SOR=3.912;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:527,39,0
3	9932427	rs138937423	G	C	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.344;SB=-1.360e+02;SOR=0.941;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,18:33:99:564,0,341
3	9934428	rs2279795	T	C	152.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=0.549;SB=-7.997e+01;SOR=0.223;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:97:181,0,97
3	9934605	rs279553	T	C	2572.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-1.153e+03;SOR=1.387;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2601,193,0
3	9944937	rs279588	G	T	714.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.611;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.932;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=0.873;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=-0.771;SB=-3.350e+02;SOR=0.957;VQSLOD=0.021;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,30:72:99:743,0,1148
3	9947971	rs58936976	T	G	357.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.568;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.318;SB=-9.800e+01;SOR=1.402;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,12:27:99:386,0,402
3	9947972	rs56111233	A	T	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.558;SB=-9.400e+01;SOR=1.262;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:361,0,393
3	9947997	rs279581	C	T	448.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.160;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-1.338;SB=-2.280e+02;SOR=0.616;VQSLOD=9.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:477,0,539
3	9948847	rs367864144	A	G	692.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.260;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.74;ReadPosRankSum=-0.032;SB=-2.880e+02;SOR=0.411;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,27:48:99:721,0,562
3	9949659	rs432815	T	A	164.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.573;SB=0.00;SOR=0.399;VQSLOD=9.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:193,0,311
3	9952788	rs279571	T	C	1222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.617;SB=-6.780e+02;SOR=0.693;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,47:94:99:1251,0,1256
3	9958947	.	T	TG	311.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=22;ExcessHet=3.0103;FS=6.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.59;RPA=9,10;RU=G;ReadPosRankSum=-1.070;SB=-1.203e+02;SOR=0.061;STR;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:22:99:349,0,174
3	9959632	rs148170215	G	A	1710.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.733;HaplotypeScore=1.9329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.914;SB=-9.110e+02;SOR=0.852;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,62:108:99:1739,0,1240
3	9962816	rs376511	A	G	1137.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-3.230e+02;SOR=2.115;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1166,87,0
3	9966060	rs377435226	C	G	452.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.106;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-1.311;SB=-1.310e+02;SOR=1.002;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:481,0,552
3	9969932	rs57179462	TGG	T	1009.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.55;RPA=4,2;RU=G;ReadPosRankSum=0.936;SB=-3.350e+02;SOR=0.693;STR;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,22:32:99:1047,0,419
3	9970031	rs279549	A	G	1503.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-9.130e+02;SOR=0.818;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1532,114,0
3	9970442	rs279547	C	T	243.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.605;SB=-6.700e+01;SOR=1.201;VQSLOD=10.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:272,0,249
3	9975139	rs189013166	G	A	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.302;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.054;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=0.971;SB=-3.440e+02;SOR=0.941;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,25:53:99:559,0,838
3	9975247	rs183956	C	G	915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-2.401e+02;SOR=2.468;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:944,69,0
3	9976159	rs279552	A	G	841.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;SB=-1.473e+02;SOR=2.925;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:870,63,0
3	9979660	rs2302786	A	G	1073.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-6.270e+02;SOR=0.749;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1102,81,0
3	9984130	rs56125067	T	G	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.733;SB=0.00;SOR=0.330;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:132,0,242
3	9985656	rs3774207	C	T	1324.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-7.470e+02;SOR=0.941;VQSLOD=7.47;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1353,99,0
3	9985673	rs73118372	T	C	430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.041;SB=-2.300e+02;SOR=0.960;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,17:40:99:459,0,647
3	9988868	rs200215469	C	G	1032.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.109;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.240;SB=-4.050e+02;SOR=1.075;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,37:67:99:1061,0,850
3	9990800	rs59465469	G	C	985.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.54;SB=-5.150e+02;SOR=0.765;VQSLOD=4.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:1014,75,0
3	9991101	rs55847233	C	G	1816.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-1.066e+03;SOR=0.906;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1845,132,0
3	9991163	rs55847610	A	G	1867.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-9.400e+02;SOR=0.941;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1896,141,0
3	9991388	rs279601	G	C	3164.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-1.789e+03;SOR=0.914;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3193,232,0
3	10005741	rs80142883	C	T	868.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.030;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.748;SB=-3.020e+02;SOR=1.005;VQSLOD=7.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,32:74:99:897,0,1193
3	10015437	rs3732967	T	C	601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=-2.790e+02;SOR=1.230;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:630,45,0
3	10044457	rs55962400	C	T	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.063;SB=-1.080e+02;SOR=0.223;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:220,0,172
3	10044626	rs13088350	T	C	559.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-2.960e+02;SOR=0.693;VQSLOD=6.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:588,45,0
3	10045030	rs13066757	C	A	715.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.819;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.433;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-1.345;SB=-3.300e+02;SOR=0.260;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,28:51:99:744,0,635
3	10048502	rs7627372	C	T	505.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-1.951e+02;SOR=1.371;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:534,39,0
3	10048601	rs7638846	A	G	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.496;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.187;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.55;ReadPosRankSum=0.217;SB=-7.000e+01;SOR=0.269;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:133,0,303
3	10048839	rs3732964	C	G	447.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.44;SB=-3.876e+01;SOR=3.767;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:476,39,0
3	10048885	rs3732963	G	T	865.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-1.991e+02;SOR=2.670;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:894,66,0
3	10048951	rs3732962	T	C	1224.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-6.920e+02;SOR=1.127;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:90:1253,90,0
3	10049287	rs2272118	T	C	1963.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.54;SB=-1.050e+03;SOR=1.394;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1992,150,0
3	10049352	rs2272119	A	G	1257.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=-7.897e+01;SOR=4.804;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:96:1286,96,0
3	10049861	rs9837307	G	A	398.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=0.00;SOR=4.977;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:427,33,0
3	10049922	rs9837460	G	C	1048.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SB=-2.361e+02;SOR=2.694;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1077,78,0
3	10059664	rs73017232	T	C	119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=-0.967;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=1.940;SB=-6.200e+01;SOR=1.329;VQSLOD=3.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:148,0,105
3	10065144	rs6775725	G	A	411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.947;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-0.653;SB=-2.270e+02;SOR=0.569;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:440,0,499
3	10065426	rs6803517	C	T	994.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.176;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=-1.000;SB=-4.000e+02;SOR=1.139;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,34:63:99:1023,0,797
3	10065528	rs9834980	G	A	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.263;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-1.148;SB=-2.801e+01;SOR=1.460;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,10:23:99:276,0,425
3	10067794	rs35993975	A	G	546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=7.545;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.170;SB=-3.260e+02;SOR=0.105;VQSLOD=6.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:575,0,559
3	10067797	rs33917318	T	C	568.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.238;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=9.995;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.078;SB=-3.210e+02;SOR=0.105;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:597,0,578
3	10067972	rs17032268	C	T	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=7.375;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-1.023;SB=-8.297e+01;SOR=0.044;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:231,0,344
3	10073824	rs6414438	G	C	1460.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-5.180e+02;SOR=1.714;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1489,108,0
3	10076842	rs55973240	CTT	C	1113.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.89;RPA=10,8;RU=T;ReadPosRankSum=0.144;SB=-2.650e+02;SOR=0.558;STR;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,35:57:99:1151,0,668
3	10076975	rs17032276	A	C	1555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.911;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=3.941;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=-0.153;SB=-5.690e+02;SOR=1.112;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,56:100:99:1584,0,1078
3	10077023	rs17032277	T	C	1014.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.295;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=-0.545;SB=-2.800e+02;SOR=0.653;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,34:65:99:1043,0,833
3	10077955	rs17032278	A	G	388.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.049;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=10.099;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-0.702;SB=-2.820e+02;SOR=0.105;VQSLOD=6.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,17:41:99:417,0,658
3	10081411	rs34936017	A	G	1591.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-0.404;SB=-1.026e+03;SOR=0.709;VQSLOD=7.89;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,65:144:99:1620,0,1994
3	10081545	rs17032283	G	C	933.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=9.197;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.093;SB=-1.830e+02;SOR=1.828;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,31:71:99:962,0,1249
3	10081676	rs56238688	TA	T	248.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;DB;DP=23;ExcessHet=3.0103;FS=5.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;RPA=10,9;RU=A;ReadPosRankSum=1.704;SB=-8.251e+01;SOR=0.089;STR;VQSLOD=6.94;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,13:23:99:286,0,173
3	10082335	rs56219631	A	G	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.678;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-1.041;SB=-1.340e+02;SOR=0.667;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,19:47:99:501,0,748
3	10083526	rs201603399	CTT	C	108.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=0.842;QD=7.25;RPA=15,13;RU=T;ReadPosRankSum=1.277;SB=-1.765e+00;SOR=1.230;STR;VQSLOD=1.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:21:99:146,0,210
3	10084224	rs9879080	C	T	587.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.283;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.124;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.803;SB=-2.690e+02;SOR=0.437;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,23:55:99:616,0,842
3	10085035	rs803335	G	T	987.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-4.150e+02;SOR=1.255;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:75:1016,75,0
3	10085130	rs9809061	C	G	426.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.287;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.808;SB=-1.780e+02;SOR=1.133;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:455,0,573
3	10085624	rs145762470	G	T	42.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.51;MQ0=0;MQRankSum=-1.207;POSITIVE_TRAIN_SITE;QD=2.38;ReadPosRankSum=0.712;SB=-9.732e-01;SOR=0.551;VQSLOD=2.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,3:18:71:71,0,461
3	10089773	rs7615646	A	C	905.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.409;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=8.219;HaplotypeScore=2.4328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=-0.026;SB=-6.410e+02;SOR=0.266;VQSLOD=6.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:53,43:96:99:934,0,1505
3	10091035	rs10222446	T	C	1562.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=2;POSITIVE_TRAIN_SITE;QD=29.49;SB=-5.370e+02;SOR=2.004;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1591,117,0
3	10094206	.	A	AT	73.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.92;RPA=13,14;RU=T;ReadPosRankSum=0.393;SB=0.00;SOR=0.582;STR;VQSLOD=7.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,7:18:99:111,0,145
3	10114802	rs9824585	T	C	258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=1.986;SB=-6.900e+01;SOR=0.859;VQSLOD=9.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:287,0,191
3	10119917	rs6805869	T	C	684.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=0.789;SB=-3.690e+02;SOR=0.910;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,29:73:99:713,0,1181
3	10122719	rs56224827	C	T	385.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.120;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.84;ReadPosRankSum=-0.052;SB=-1.030e+02;SOR=0.299;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:414,0,337
3	10133710	rs9849434	G	A	120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.701;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=0.844;SB=0.00;SOR=0.193;VQSLOD=8.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:99:149,0,443
3	10133949	rs9811771	A	G	2293.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-9.820e+02;SOR=1.516;VQSLOD=5.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2322,166,0
3	10134766	rs12374115	C	T	212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=-0.546;SB=0.00;SOR=1.270;VQSLOD=10.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:241,0,132
3	10136150	rs7610821	C	T	257.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.876;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=0.423;SB=-9.400e+01;SOR=1.276;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:286,0,250
3	10138069	rs2272125	T	G	740.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.422;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.751;SB=-4.200e+02;SOR=0.536;VQSLOD=8.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,31:76:99:769,0,1063
3	10138189	rs2272124	T	C	429.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.865;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-0.675;SB=-5.900e+01;SOR=0.770;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,15:45:99:458,0,898
3	10140671	rs7626117	G	A	2930.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-9.940e+02;SOR=2.007;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2959,217,0
3	10140696	rs7647987	A	G	1151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.307;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.304;SB=-2.640e+02;SOR=0.793;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,41:79:99:1180,0,1070
3	10142749	rs147278790	TA	T	138.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.82;RPA=14,13;RU=A;ReadPosRankSum=1.645;SB=0.00;SOR=3.258;STR;VQSLOD=4.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,9:10:4:174,4,0
3	10144778	rs200508989	TAA	TA,T	360.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;QD=24.05;RPA=13,12,11;RU=A;SB=-7.894e+00;SOR=5.549;STR;VQSLOD=5.48;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,7,8:16:99:398,183,142,166,0,158
3	10146616	rs113292025	ATTATT	A	663.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.52;RPA=4,3;RU=TTATT;SB=-6.976e+01;SOR=3.442;STR;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:12:33:701,33,0
3	10157205	rs67852463	G	C	276.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=1.237;SB=-9.400e+01;SOR=0.760;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,11:29:99:305,0,515
3	10157337	rs7645667	C	A	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.638;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.492;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=-0.126;SB=-8.500e+01;SOR=1.445;VQSLOD=7.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:27:99:288,0,471
3	10157368	rs7645759	C	T	849.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-3.340e+02;SOR=1.358;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:66:878,66,0
3	10167264	rs67667957	G	C	1670.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-6.070e+02;SOR=1.609;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1699,123,0
3	10183876	rs61758376	G	C	523.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.433;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=4.076;HaplotypeScore=1.9066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.19;ReadPosRankSum=-0.967;SB=-1.490e+02;SOR=1.292;VQSLOD=7.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,22:57:99:552,0,935
3	10186216	rs34232505	T	A	419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.494;HaplotypeScore=9.7847;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-1.350;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.054;SB=-1.350e+02;SOR=1.429;VQSLOD=9.300e-03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,17:33:99:448,0,390
3	10188428	rs1678607	T	G	529.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-4.176e+01;SOR=4.047;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:558,42,0
3	10189929	rs1681660	T	C	642.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-2.011e+02;SOR=1.931;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:671,48,0
3	10241987	rs263410	A	C	577.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-8.097e+01;SOR=3.258;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:606,45,0
3	10242070	rs55898544	A	G	323.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.448;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.254;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=0.190;SB=-2.310e+02;SOR=0.255;VQSLOD=7.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,14:32:99:352,0,506
3	10242243	rs263411	G	A	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.694;SB=-2.601e+01;SOR=0.551;VQSLOD=10.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:201,0,172
3	10251196	rs459864	A	G	566.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.375;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.974;SB=-2.700e+02;SOR=1.426;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,23:43:99:595,0,591
3	10251288	rs56053222	G	C	414.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.356;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=0.163;SB=-2.330e+02;SOR=0.660;VQSLOD=7.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:443,0,613
3	10251489	rs181746881	A	G	422.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=1.358;SB=-1.380e+02;SOR=0.990;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:451,0,425
3	10254797	rs11465897	C	A	529.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.977;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.345;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.571;SB=-1.520e+02;SOR=1.358;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,21:43:99:558,0,632
3	10258493	rs2302862	T	C	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.132;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=0.784;SB=0.00;SOR=0.250;VQSLOD=9.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,7:21:99:224,0,424
3	10258514	rs2302861	T	C	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.555;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=8.468;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-0.252;SB=-7.697e+01;SOR=0.031;VQSLOD=6.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,9:23:99:230,0,486
3	10258579	rs11465901	C	T	479.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.376;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-0.427;SB=-2.180e+02;SOR=0.727;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,19:53:99:508,0,881
3	10258762	rs2302860	G	C	1062.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-1.015;SB=-3.930e+02;SOR=0.682;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,41:69:99:1091,0,679
3	10261237	rs3895949	A	C	306.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.902;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=-0.212;SB=-3.876e+01;SOR=0.693;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:335,0,112
3	10261248	rs3895948	T	C	375.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.258;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=-0.736;SB=-6.997e+01;SOR=0.495;VQSLOD=9.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,13:17:99:404,0,120
3	10261294	rs3895947	A	G	399.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=1.106;SB=-1.820e+02;SOR=0.929;VQSLOD=9.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,17:26:99:428,0,200
3	10264299	rs813591	C	T	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=1.421;SB=-8.600e+01;SOR=0.892;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:405,0,556
3	10276163	rs708035	T	A	2345.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-1.110e+03;SOR=1.226;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2374,175,0
3	10276196	rs56197044	G	A	645.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.995;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=-0.281;SB=-3.040e+02;SOR=1.106;VQSLOD=7.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,26:72:99:674,0,1293
3	10283716	rs796552	A	G	568.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-3.876e+01;SOR=4.047;VQSLOD=5.44;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:45:597,45,0
3	10290952	rs148376271	G	A	1425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=1.468;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-0.297;SB=-5.760e+02;SOR=0.884;VQSLOD=7.15;culprit=DP	GT:AD:DP:GQ:PL	0/1:73,58:131:99:1454,0,1850
3	10301595	rs77634477	C	A	209.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=2.438;SB=0.00;SOR=1.179;VQSLOD=9.05;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:238,0,163
3	10302045	rs2241313	C	T	673.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.318;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.962;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=0.824;SB=-3.400e+02;SOR=0.393;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,28:71:99:702,0,1166
3	10302056	rs2241314	A	G	2179.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-1.331e+03;SOR=0.869;VQSLOD=4.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2208,166,0
3	10302172	rs394558	G	A	2380.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-1.195e+03;SOR=1.002;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2409,181,0
3	10302369	rs451952	T	C	1396.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-5.310e+02;SOR=1.775;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1425,102,0
3	10302395	rs439483	G	C	1099.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-4.080e+02;SOR=1.819;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1128,81,0
3	10318230	.	A	AT	1514.73	PASS	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.97;RPA=1,2;RU=T;SB=-3.250e+02;SOR=2.584;STR;VQSLOD=4.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:36:99:1552,102,0
3	10328250	rs35683	A	C	2113.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-7.340e+02;SOR=2.070;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2142,154,0
3	10342876	rs696221	C	T	948.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-4.000e+02;SOR=1.681;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:977,72,0
3	10345527	rs697232	G	A	768.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=7.360;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-1.222;SB=-1.690e+02;SOR=1.931;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,29:68:99:797,0,1140
3	10345921	rs40515	C	T	880.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.448;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.02;ReadPosRankSum=0.329;SB=0.00;SOR=1.364;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,28:44:99:909,0,518
3	10347546	rs3835090	CAACAGT	C	2381.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.426;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=0.704;SB=-8.780e+02;SOR=0.675;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,27:50:99:2419,0,2001
3	10353550	rs35670	T	C	465.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.311;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.774;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-0.211;SB=-2.940e+02;SOR=0.346;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:494,0,559
3	10353626	rs35671	C	T	406.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=1.500;SB=-2.260e+02;SOR=0.846;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,16:40:99:435,0,691
3	10359462	rs28349	A	G	101.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.480;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.83;ReadPosRankSum=-1.755;SB=-2.601e+01;SOR=1.981;VQSLOD=6.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,5:13:99:130,0,247
3	10359628	rs1642977	T	A	259.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-1.025;SB=-1.260e+02;SOR=0.534;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:288,0,444
3	10377760	rs150074749	C	T	411.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.322;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=1.884;SB=0.00;SOR=2.049;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,12:16:99:440,0,112
3	10379923	rs35678	C	T	687.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.966;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.240;SB=-4.220e+02;SOR=0.631;VQSLOD=9.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,26:53:99:716,0,591
3	10382111	rs171337	T	C	1404.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;SB=-7.330e+02;SOR=0.902;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1433,105,0
3	10382148	rs154242	G	A	1701.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-7.670e+02;SOR=1.085;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1730,129,0
3	10382537	rs709640	T	G	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.06;ReadPosRankSum=-0.847;SB=0.00;SOR=0.124;VQSLOD=9.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:81:81,0,355
3	10387059	rs241509	C	A	1119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.686;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=6.849;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-2.182;SB=-5.010e+02;SOR=0.224;VQSLOD=6.52;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1148,0,1172
3	10396754	rs703907	A	G	308.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.845;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=-1.560;SB=-1.570e+02;SOR=0.846;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,13:34:99:337,0,536
3	10400643	rs28113	G	A	773.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-3.480e+02;SOR=1.445;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:802,57,0
3	10401856	rs2278554	G	T	336.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.983;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=-0.695;SB=-4.076e+01;SOR=0.368;VQSLOD=9.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:365,0,273
3	10413601	rs2289273	G	A	860.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=3.697;HaplotypeScore=3.4379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.83;ReadPosRankSum=-3.098;SB=-5.680e+02;SOR=0.578;VQSLOD=6.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:70,40:110:99:889,0,1839
3	10413715	rs2289274	G	A	1833.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.11;SB=-5.810e+02;SOR=2.194;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1862,138,0
3	10420087	rs751122	T	C	729.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-4.480e+02;SOR=0.859;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:758,54,0
3	10421107	rs7616000	A	G	80.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.081;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.85;ReadPosRankSum=-1.883;SB=-2.302e+01;SOR=0.616;VQSLOD=7.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:21:99:109,0,467
3	10427190	rs725027	C	T	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-4.276e+01;SOR=3.442;VQSLOD=7.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:402,30,0
3	10436016	rs9858979	C	T	490.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=0.00;SOR=5.283;VQSLOD=7.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:519,39,0
3	10442539	rs17032820	A	G	333.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.132;SB=-6.500e+01;SOR=0.495;VQSLOD=9.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:362,0,486
3	10885787	rs2304724	G	A	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-0.177;SB=0.00;SOR=0.859;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:206,0,152
3	10885920	rs2304725	T	C	1950.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-6.610e+02;SOR=1.773;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1979,147,0
3	10975745	rs2272399	C	T	893.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.743;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.811;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=1.431;SB=-5.160e+02;SOR=0.821;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,38:86:99:922,0,1173
3	10975994	rs4434127	G	C	172.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-0.525;SB=0.00;SOR=0.859;VQSLOD=9.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:201,0,173
3	10976876	rs2245532	A	G	565.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.544;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=0.127;SB=-2.351e+02;SOR=0.132;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,21:31:99:594,0,277
3	11059996	rs1728803	A	G	373.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=4.977;VQSLOD=7.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:402,33,0
3	11062062	rs3774070	C	T	2064.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-6.540e+02;SOR=2.267;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2093,156,0
3	11064091	rs6344	G	T	1635.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-5.030e+02;SOR=2.030;VQSLOD=6.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1664,120,0
3	11075503	rs2246543	T	C	1132.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4543;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-3.080e+02;SOR=2.368;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1161,84,0
3	11300707	rs901865	T	C	1324.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-4.390e+02;SOR=1.954;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:96:1353,96,0
3	11350553	rs2305686	C	T	1718.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-5.550e+02;SOR=1.958;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1747,129,0
3	11487891	rs2442798	G	A	325.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=0.00;SOR=4.804;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:27:354,27,0
3	11596348	rs14016	C	T	3678.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-2.131e+03;SOR=1.010;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,121:122:99:3707,268,0
3	11643465	rs2276749	T	C	2231.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-3.300e+02;SOR=3.575;VQSLOD=5.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2260,166,0
3	11667602	rs2574712	G	A	336.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=0.724;SB=-7.397e+01;SOR=1.329;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,11:12:8:364,0,8
3	11667714	rs3856802	C	T	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.265;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.74;ReadPosRankSum=0.812;SB=-1.041e+01;SOR=1.721;VQSLOD=6.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,6:28:99:133,0,677
3	11744544	.	G	GA	409.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DP=33;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;RPA=6,7;RU=A;ReadPosRankSum=1.622;SB=-1.020e+02;SOR=1.085;STR;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:447,0,371
3	11831953	rs9267	C	T	389.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=0.327;SB=-4.076e+01;SOR=0.420;VQSLOD=9.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,13:21:99:418,0,259
3	11848874	rs3796330	G	C	371.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.987;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.731;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-0.332;SB=-8.000e+01;SOR=2.147;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,13:33:99:400,0,546
3	11880760	rs7641243	T	C	835.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.969;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.137;HaplotypeScore=4.6521;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=-1.016;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.006;SB=-2.010e+02;SOR=1.112;VQSLOD=0.288;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,32:67:99:864,0,1061
3	11880816	rs303862	C	A	729.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.086;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=8.667;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=1.055;SB=-1.951e+02;SOR=0.042;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,24:39:99:758,0,434
3	11933184	rs2470576	G	T	361.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-3.677e+01;SOR=3.442;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:390,30,0
3	11947579	rs2470571	T	C	342.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-1.165e+02;SOR=1.802;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:371,27,0
3	11947803	rs59064362	TC	T	547.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-9.297e+01;SOR=2.833;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:14:39:585,39,0
3	11947805	rs56306272	A	G	463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.20;SB=-8.297e+01;SOR=2.833;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:492,36,0
3	11947825	rs60480446	TC	T	590.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-9.397e+01;SOR=2.833;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:628,39,0
3	12045836	rs77116964	C	G	76.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.98;ReadPosRankSum=0.456;SB=0.00;SOR=0.330;VQSLOD=9.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:11:99:105,0,246
3	12045850	rs62240360	G	C	327.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;SB=0.00;SOR=4.977;VQSLOD=7.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:356,27,0
3	12045864	rs80251534	A	T	386.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-4.076e+01;SOR=3.767;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:33:415,33,0
3	12045891	rs79624759	T	C	712.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1695;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-6.997e+01;SOR=3.816;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:741,54,0
3	12045899	rs77368781	C	T	733.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1350;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-4.076e+01;SOR=4.804;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:23:60:762,60,0
3	12045923	rs73135622	A	C	1000.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.13;SB=-1.553e+02;SOR=3.258;VQSLOD=4.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:1029,75,0
3	12045986	rs67270413	G	A	1377.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-8.540e+02;SOR=0.693;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1406,102,0
3	12046013	rs72624441	A	C	1489.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;SB=-9.480e+02;SOR=0.859;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1518,108,0
3	12046076	rs2618395	T	C	1207.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-3.560e+02;SOR=2.362;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:90:1236,90,0
3	12046124	rs76272937	A	G	591.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-4.276e+01;SOR=4.174;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:620,45,0
3	12046125	rs74800608	G	C	572.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.35;SB=-4.276e+01;SOR=4.174;VQSLOD=5.67;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:45:601,45,0
3	12046131	rs74213196	A	C	496.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-4.276e+01;SOR=3.912;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:39:525,39,0
3	12046148	rs2623874	C	T	364.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.46;SB=0.00;SOR=4.804;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:393,30,0
3	12112010	rs598747	G	A	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=1.834;SB=-2.203e+01;SOR=1.609;VQSLOD=7.25;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:133,0,113
3	12112053	rs598704	G	A	190.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=6.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=-1.017;SB=-6.300e+01;SOR=1.447;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:97:219,0,97
3	12112259	.	G	A	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;DP=18;Dels=0.00;ExcessHet=3.0103;FS=8.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.43;ReadPosRankSum=-0.453;SB=-9.600e+01;SOR=1.670;VQSLOD=5.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:360,0,155
3	12195622	rs308952	A	G	171.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.903;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=-0.293;SB=0.00;SOR=0.425;VQSLOD=10.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:200,0,342
3	12202866	rs308950	C	G	362.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.076;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=1.444;SB=-2.901e+01;SOR=2.147;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:391,0,267
3	12208652	rs795008	A	G	1055.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-2.830e+02;SOR=2.226;VQSLOD=6.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,29:29:81:1084,81,0
3	12208671	rs795009	G	T	547.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.371;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.594;HaplotypeScore=1.7675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=1.169;SB=-1.720e+02;SOR=0.297;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:576,0,637
3	12208995	rs795010	T	A	99.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.56;ReadPosRankSum=0.180;SB=-5.150e-01;SOR=0.836;VQSLOD=8.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,5:28:99:128,0,697
3	12211046	rs795011	G	T	535.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.148;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=4.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-0.559;SB=-2.402e+01;SOR=1.721;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,18:42:99:564,0,716
3	12229015	rs794999	A	G	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=1.737;SB=-5.900e+01;SOR=1.022;VQSLOD=9.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:174,0,181
3	12232074	.	A	G	1494.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.795;DP=146;Dels=0.00;ExcessHet=3.0103;FS=1.332;HaplotypeScore=3.2994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.31;ReadPosRankSum=1.349;SB=-8.060e+02;SOR=0.583;VQSLOD=5.20;culprit=DP	GT:AD:DP:GQ:PL	0/1:84,61:146:99:1523,0,2148
3	12232208	rs310765	T	G	606.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.946;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=9.379;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.717;SB=-1.245e+02;SOR=0.045;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:40:99:635,0,647
3	12299313	rs9853146	A	G	639.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.010;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=1.160;SB=-4.160e+02;SOR=0.880;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,30:57:99:668,0,619
3	12299345	rs62242085	G	T	672.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.075;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.417;SB=-3.920e+02;SOR=0.737;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,30:52:99:701,0,555
3	12475557	rs3856806	C	T	1383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=3.448;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-0.040;SB=-8.180e+02;SOR=0.420;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,54:114:99:1412,0,1625
3	12490256	rs146172896	G	A	46.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7984;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=-1.150;POSITIVE_TRAIN_SITE;QD=3.90;ReadPosRankSum=-0.086;SB=0.00;SOR=0.148;VQSLOD=3.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:75:75,0,317
3	12531421	.	G	A	1115.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.202;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.88;ReadPosRankSum=0.400;SB=-6.120e+02;SOR=1.154;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,45:75:99:1144,0,678
3	12531461	rs78685815	G	A	1237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.268;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=6.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=-0.005;SB=-8.210e+02;SOR=0.406;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,48:79:99:1266,0,682
3	12533505	rs74685105	C	A	598.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.420;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.330;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=0.888;SB=-1.350e+02;SOR=1.560;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,21:40:99:627,0,527
3	12533753	rs144898008	TA	T	699.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.99;RPA=2,1;RU=A;ReadPosRankSum=-0.860;SB=-8.497e+01;SOR=0.551;STR;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,19:26:99:737,0,198
3	12537924	rs17036841	T	C	321.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.993;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=1.477;SB=-1.330e+02;SOR=0.102;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:350,0,332
3	12538111	rs41293387	A	G	275.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.351;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.57;ReadPosRankSum=-0.122;SB=-7.900e+01;SOR=1.127;VQSLOD=6.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,13:42:99:304,0,790
3	12544779	rs77899976	G	A	551.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.636;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.186;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.885;SB=-3.040e+02;SOR=0.399;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,22:47:99:580,0,720
3	12544841	rs142211875	A	C	715.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.540;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-1.128;SB=-4.670e+02;SOR=0.324;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,30:62:99:744,0,1027
3	12545091	rs3796329	T	C	1395.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=4.860;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-0.320;SB=-7.120e+02;SOR=0.521;VQSLOD=7.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,50:103:99:1424,0,1620
3	12545493	rs76776919	A	G	207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=0.361;SB=0.00;SOR=1.270;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:236,0,115
3	12557945	rs72007282	ATGTG	A	240.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.703;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.59;RPA=21,19;RU=TG;ReadPosRankSum=-1.150;SB=0.00;SOR=1.179;STR;VQSLOD=10.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:3,5:10:5:277,5,0
3	12560560	rs17036879	G	A	956.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.995;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.100;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-1.163;SB=-1.480e+02;SOR=0.901;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:56,35:91:99:985,0,1768
3	12616533	rs3773341	G	A	1131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.753;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=0.432;SB=-4.180e+02;SOR=0.825;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:73,45:118:99:1160,0,2258
3	12633424	.	A	AT	60.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.20;RPA=16,17;RU=T;ReadPosRankSum=0.930;SB=0.00;SOR=0.321;STR;VQSLOD=7.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:24:98:98,0,194
3	12650482	rs2454440	T	A	1980.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.01;SB=-5.600e+02;SOR=2.381;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2009,150,0
3	12660291	rs3729926	C	T	1264.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-2.750e+02;SOR=2.891;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1293,99,0
3	12779409	rs2271209	A	G	1686.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.42;SB=-6.810e+02;SOR=1.473;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1715,126,0
3	12941094	rs3773308	G	A	1087.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-2.341e+02;SOR=2.765;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:87:1116,87,0
3	12942850	rs56387830	GC	G	2194.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;RPA=2,1;RU=C;SB=-6.200e+02;SOR=1.848;STR;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,51:52:99:2232,153,0
3	13114408	rs463268	A	C	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=-0.468;SB=-6.200e+01;SOR=1.179;VQSLOD=9.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:416,0,258
3	13114691	rs74753289	G	A	331.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=1.542;SB=-4.076e+01;SOR=0.610;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:360,0,155
3	13359433	rs354477	G	A	816.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SB=-2.001e+02;SOR=2.494;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:63:845,63,0
3	13360513	rs184930	C	T	334.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=-1.143;SB=-7.597e+01;SOR=0.191;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:363,0,227
3	13361040	rs71918947	A	AGAG	2279.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.02;RPA=1,2;RU=GAG;SB=-1.047e+03;SOR=0.914;STR;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:39:99:2317,114,0
3	13361238	rs2276748	C	T	1451.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=-7.720e+02;SOR=0.741;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1480,111,0
3	13361287	rs354478	C	T	1500.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-8.280e+02;SOR=0.874;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1529,114,0
3	13361391	rs354479	A	G	1162.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-4.730e+02;SOR=1.371;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1191,87,0
3	13364876	rs514084	G	T	2133.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-1.218e+03;SOR=0.776;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2162,160,0
3	13367406	rs665064	C	T	1273.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-5.770e+02;SOR=1.445;VQSLOD=6.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1302,96,0
3	13373893	rs11918212	G	C	947.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.693;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.905;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-0.740;SB=-3.650e+02;SOR=0.913;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,35:79:99:976,0,1355
3	13383540	rs2271504	A	G	593.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.292;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.999;SB=-2.310e+02;SOR=0.793;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,22:51:99:622,0,834
3	13390953	rs114154179	C	T	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.291;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=-0.712;SB=0.00;SOR=0.307;VQSLOD=9.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:99:141,0,318
3	13391121	.	C	T	241.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.541;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.625;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.634;SB=-8.600e+01;SOR=1.112;VQSLOD=4.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,14:51:99:270,0,1107
3	13395579	rs2280084	C	A	889.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.683;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.021;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.000;SB=-5.570e+02;SOR=0.672;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,34:67:99:918,0,908
3	13407556	rs3732671	T	C	304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.536;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.208;SB=-2.510e+02;SOR=0.280;VQSLOD=8.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:333,0,319
3	13432581	rs6442382	A	G	138.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.421;SB=0.00;SOR=0.368;VQSLOD=10.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:167,0,267
3	13523010	rs2655218	T	C	244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.211;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=8.038;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.723;SB=-2.302e+01;SOR=2.765;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:273,0,380
3	13523057	rs3732670	C	T	168.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.711;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-2.376;SB=-4.176e+01;SOR=0.175;VQSLOD=9.38;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:197,0,245
3	13538363	.	T	TG	611.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DP=54;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.02;RPA=7,8;RU=G;ReadPosRankSum=-0.224;SB=-2.770e+02;SOR=0.815;STR;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,22:54:99:649,0,731
3	13539850	rs75944917	C	G	538.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.549;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.426;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-0.161;SB=-2.160e+02;SOR=0.252;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:567,0,535
3	13574068	rs35913726	AC	A	362.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;RPA=7,6;RU=C;ReadPosRankSum=1.671;SB=-1.260e+02;SOR=0.446;STR;VQSLOD=9.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:25:99:400,0,261
3	13611850	rs3732668	T	C	461.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.251;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.883;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.503;SB=-3.000e+02;SOR=0.577;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,20:37:99:490,0,398
3	13612020	rs3732667	T	C	211.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=3.091;SB=-1.270e+02;SOR=0.693;VQSLOD=8.70;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:240,0,189
3	13612936	rs3732666	A	G	1930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=3.081;HaplotypeScore=3.5662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=1.791;SB=-1.040e+03;SOR=1.039;VQSLOD=6.98;culprit=DP	GT:AD:DP:GQ:PL	0/1:62,79:141:99:1959,0,1577
3	13649339	rs6442403	A	G	353.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.684;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=1.905;SB=-1.765e+00;SOR=1.911;VQSLOD=6.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,11:21:99:382,0,304
3	13649762	rs2276747	G	A	375.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.805;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-1.602;SB=0.00;SOR=0.460;VQSLOD=9.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:404,0,539
3	13659897	rs4596126	A	C	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=0.184;SB=-8.197e+01;SOR=0.223;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:292,0,158
3	13667818	rs6801891	C	T	952.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=0.00;SOR=6.439;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:981,72,0
3	13669537	rs1966825	T	G	636.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-1.245e+02;SOR=2.948;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:665,48,0
3	13670481	rs2242023	A	G	2837.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-1.420e+03;SOR=1.280;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2866,217,0
3	13670536	rs9843344	A	G	3098.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-1.525e+03;SOR=1.154;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3127,229,0
3	13670776	rs4684968	T	C	1831.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-7.240e+02;SOR=1.888;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1860,141,0
3	13670837	rs4684969	T	G	1027.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-4.176e+01;SOR=5.211;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:78:1056,78,0
3	13671183	rs877432	T	A	365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-4.276e+01;SOR=3.442;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:30:394,30,0
3	13672392	rs3773258	G	C	1348.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-3.290e+02;SOR=2.613;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1377,102,0
3	13672732	rs3773255	C	T	1711.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-1.881e+02;SOR=3.611;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1740,129,0
3	13673043	rs2290191	G	A	655.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-7.597e+01;SOR=3.500;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:51:684,51,0
3	13860957	rs79020924	A	G	367.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.047;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=0.745;SB=0.00;SOR=1.022;VQSLOD=9.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:396,0,246
3	13916407	rs3749319	G	T	1743.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-2.321e+02;SOR=3.657;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1772,129,0
3	13977703	rs6773180	A	C	406.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-4.176e+01;SOR=3.442;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:435,33,0
3	13978801	rs2009781	A	G	1233.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-7.430e+02;SOR=0.793;VQSLOD=5.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1262,96,0
3	13978803	rs6776709	A	G	1258.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-6.990e+02;SOR=0.843;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,41:41:93:1287,93,0
3	14105607	.	C	T	280.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.796;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.461;SB=-1.590e+02;SOR=0.732;VQSLOD=7.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,13:33:99:309,0,562
3	14106310	.	T	TCCAGCACCAGCAGTC	2575.73	PASS	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.74;MQ0=0;QD=28.62;RPA=1,2;RU=CCAGCACCAGCAGTC;SB=-1.668e+02;SOR=4.407;STR;VQSLOD=2.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:2613,54,0
3	14106499	rs2607779	G	A	831.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-2.690e+02;SOR=1.981;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:860,63,0
3	14154231	rs2731316	T	G	372.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.297;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=0.812;SB=-3.400e+01;SOR=1.179;VQSLOD=9.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:401,0,225
3	14157890	rs2607747	C	G	338.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.720;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-2.063;SB=-6.300e+01;SOR=1.214;VQSLOD=7.21;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,13:29:99:367,0,453
3	14157913	rs2731314	A	G	456.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.405;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.591;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.157;SB=-9.500e+01;SOR=1.179;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,16:34:99:485,0,453
3	14158220	rs2731313	G	A	509.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=0.572;SB=-7.897e+01;SOR=0.368;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,17:24:99:538,0,215
3	14166835	rs2733579	C	T	272.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=-1.636;SB=0.00;SOR=0.941;VQSLOD=9.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:301,0,240
3	14175149	rs2733585	G	A	455.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.556;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-1.092;SB=-3.400e+01;SOR=1.051;VQSLOD=9.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:484,0,333
3	14177194	rs2607765	T	C	547.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.23;SB=-4.376e+01;SOR=4.047;VQSLOD=6.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:42:576,42,0
3	14180552	rs2607767	A	G	445.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=0.00;SOR=5.283;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:474,39,0
3	14187449	rs2228001	G	T	536.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-2.730e+02;SOR=0.941;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:17:42:565,42,0
3	14188700	rs2733533	C	A	475.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.460;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.028;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=0.399;SB=-1.905e+01;SOR=1.831;VQSLOD=7.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,17:48:99:504,0,962
3	14188762	rs2733534	G	C	1288.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.871;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=8.946;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.598;SB=-3.190e+02;SOR=1.581;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:53,44:97:99:1317,0,1366
3	14189340	rs2607749	A	G	292.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.995;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.525;SB=-6.800e+01;SOR=0.693;VQSLOD=9.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,11:22:99:321,0,346
3	14190237	rs2279017	T	G	1915.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-1.014e+03;SOR=1.034;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1944,141,0
3	14190268	rs2470353	G	C	705.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.949;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=0.325;SB=-3.930e+02;SOR=0.839;VQSLOD=7.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,29:62:99:734,0,889
3	14193889	rs2227998	C	T	1843.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=3.817;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.220;SB=-1.046e+03;SOR=0.544;VQSLOD=6.99;culprit=DP	GT:AD:DP:GQ:PL	0/1:85,68:153:99:1872,0,2318
3	14197987	rs2958057	A	T	4146.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-2.346e+03;SOR=0.892;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4175,307,0
3	14201352	rs3731125	T	C	519.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.416;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=16.196;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-0.176;SB=-6.829e-02;SOR=4.158;VQSLOD=5.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:548,0,486
3	14208625	rs3729587	G	C	557.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.777;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.859;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.841;SB=-3.340e+02;SOR=0.295;VQSLOD=7.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,26:64:99:586,0,1153
3	14220095	rs2607775	C	G	2545.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.824;DB;DP=197;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=2.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.069;SB=-1.038e+03;SOR=0.948;VQSLOD=6.26;culprit=DP	GT:AD:DP:GQ:PL	0/1:107,90:197:99:2574,0,3035
3	14444243	rs67046817	CT	C	1276.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.27;SB=-5.890e+02;SOR=0.997;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:31:84:1314,84,0
3	14444249	rs66528743	CT	C	1244.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-5.910e+02;SOR=0.922;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1282,81,0
3	14444276	rs66873458	GC	G	938.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;RPA=2,1;RU=C;SB=-3.000e+02;SOR=1.708;STR;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:24:69:976,69,0
3	14444285	rs66774122	GC	G	970.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;RPA=2,1;RU=C;SB=-2.751e+02;SOR=1.931;STR;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:23:66:1008,66,0
3	14444308	rs68047955	CT	C	856.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.97;SB=-1.773e+02;SOR=2.531;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:894,60,0
3	14444318	rs67637606	CT	C	717.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.85;SB=-1.455e+02;SOR=2.584;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:18:48:755,48,0
3	14444326	rs66654032	AT	A	676.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-1.425e+02;SOR=2.448;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:714,45,0
3	14444329	rs67559364	CT	C	670.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.44;SB=-1.485e+02;SOR=2.448;VQSLOD=4.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:708,45,0
3	14485484	.	C	A	1428.77	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.02;SB=-4.750e+02;SOR=1.900;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1457,111,0
3	14486392	rs3773189	A	G	1572.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;SB=-1.393e+02;SOR=3.516;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1601,117,0
3	14519885	rs2241781	A	T	926.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-4.076e+01;SOR=4.255;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:955,72,0
3	14520164	rs2241780	A	G	924.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;SB=-1.553e+02;SOR=3.098;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:69:953,69,0
3	14520560	rs2304510	G	C	707.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.355;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.628;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=0.477;SB=-4.410e+02;SOR=0.356;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,28:47:99:736,0,560
3	14526538	rs1062540	G	A	1301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.152;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=2.650;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-0.387;SB=-7.120e+02;SOR=0.458;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,50:101:99:1330,0,1332
3	14526612	rs35363110	AT	ATT,A	727.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.775;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.66;RPA=13,14,12;RU=T;ReadPosRankSum=-0.255;SB=-2.430e+02;SOR=0.446;STR;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,11,26:52:99:765,566,764,257,0,360
3	14526656	rs1126666	A	G	537.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.983;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-1.255;SB=-2.492e+02;SOR=0.330;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,21:28:99:566,0,170
3	14537867	rs11918344	A	G	1030.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-5.080e+02;SOR=1.002;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1059,78,0
3	14538072	rs11333211	CA	C	4422.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.73;RPA=2,1;RU=A;SB=-1.755e+03;SOR=1.179;STR;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,98:98:99:4460,295,0
3	14538339	rs7638680	A	C	1088.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-3.500e+02;SOR=2.049;VQSLOD=7.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1117,81,0
3	14548494	rs2276755	A	G	959.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.698;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=-1.162;SB=-5.670e+02;SOR=0.958;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,42:93:99:988,0,1373
3	14548899	rs6786611	C	A	445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.517;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.584;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;